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We characterized 549 new human leukocyte antigen (HLA) class I and class II alleles found in newly registered stem cell donors as a result of high-throughput HLA typing. New alleles include 101 HLA-A, 132 HLA-B, 105 HLA-C, 2 HLA-DRB1, 89 HLA-DQB1 and 120 HLA-DPB1 alleles. Mainly, new alleles comprised single nucleotide variations when compared with homologous sequences. We identified nonsynonymous nucleotide mutations in 70.7% of all new alleles, synonymous variations in 26.4% and nonsense substitutions in 2.9% (null alleles). Some new alleles (55, 10.0%) were found multiple times, HLA-DPB1 alleles being the most frequent among these. Furthermore, as several new alleles were identified in individuals from ethnic minority groups, the relevance of recruiting donors belonging to such groups and the importance of ethnicity data collection in donor centers and registries is highlighted. [ABSTRACT FROM AUTHOR]

The theory of island biogeography has been used widely since its formulation, most recently finding importance in conservation biology. However, there is a paucity of applications to the marine realm, although marine ecosystems are extremely suitable to the model. In marine systems, where soft sediment bottoms are common, hard substrates represent islands, supporting a variety of obligate epiphytic and epizoic taxa (encrusters). Recruitment of individuals onto surrounding hard substrates, in this study mollusc shells, should reflect the islandbiogeographic paradigm. Therefore, hard substrates closer to the source island should have both a higher abundance of encrusters and a higher diversity of encrusters. In addition, the diversity of encrusting organisms on shells proximal to larger source areas should be higher than that observed for shells proximal to smaller source areas. To test predictions of the island-biogeographic model, we identified hard substrate islands in soft sediment habitats within the Gulf of Mexico. Because source areas differed by orders of magnitude in size, we set distance increments for sampling along each transect that were proportional to source size. The results of this study, and those of existing datasets from the Bahamas, Florida, and Mexico, indicate that the presence and size of source islands are important predictors of encrustor diversity and abundance on hard substrates in subtidal environments dominated by soft sediments.

This project has the goal to validate bioinformatics methods and tools for HLA haplotype frequency analysis specifically addressing unique issues of haematopoietic stem cell registry data sets. In addition to generating new methods and tools for the analysis of registry data sets, the intent is to produce a comprehensive analysis of HLA data from 20 million donors from the Bone Marrow Donors Worldwide ( BMDW) database. This report summarizes the activity on this project as of the 16 IHIW meeting in Liverpool. [ABSTRACT FROM AUTHOR]

Abstract Background Limb immobilization causes a rapid loss of muscle mass and strength that requires appropriate rehabilitation to ensure restoration of normal function. Whereas the knowledge of muscle mass signaling with immobilization has increased in recent years, the molecular regulation in the rehabilitation of immobilization-induced muscle atrophy is only sparsely studied. To investigate the phosphorylation and expression of candidate key molecular muscle mass regulators after immobilization and subsequent rehabilitation we performed two separate studies. Methods We immobilized the lower limb for 2 weeks followed by the in-house hospital standard physiotherapy rehabilitation (Study 1). Secondly, we conducted an intervention study using the same 2 weeks immobilization protocol during which protein/carbohydrate supplementation was given. This was followed by 6 weeks of rehabilitation in the form of resistance training and continued protein/carbohydrate supplementation (Study 2). We obtained muscle biopsies from the medial gastrocnemius prior to immobilization (PRE), post-immobilization (IMMO) and post-rehabilitation (REHAB) and measured protein expression and phosphorylation of Akt, mTOR, S6k, 4E-BP1, GSK3β, ubiquitin and MURF1 and mRNA expression of Atrogin-1, MURF1, FOXO1, 3 and 4 as well as appropriate housekeeping genes. Results In both studies, no changes in protein expression or phosphorylation for any measured protein were observed. In Study 1, FOXO3 and FOXO4 mRNA expression decreased after IMMO and REHAB compared to PRE, whereas other mRNAs remained unchanged. Interestingly, we found significant changes in expression of the putative housekeeping genes GAPDH, HADHA and S26 with immobilization in both studies. Conclusions In neither study, the changes in muscle mass associated with immobilization and rehabilitation were accompanied by expected changes in expression of atrophy-related genes or phosphorylation along the Akt axis. Unexpectedly, we observed significant changes in several of the so-called housekeeping genes GAPDH, HADHA and S26 with immobilization in both studies, thereby questioning the usefulness of these genes for normalization of RNA data purposes in muscle immobilization studies.