35 results on '"Pilar M. Dominguez"'
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2. DNA Methylation Dynamics of Germinal Center B Cells Are Mediated by AID
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Pilar M. Dominguez, Matt Teater, Nyasha Chambwe, Matthias Kormaksson, David Redmond, Jennifer Ishii, Bao Vuong, Jayanta Chaudhuri, Ari Melnick, Aparna Vasanthakumar, Lucy A. Godley, F. Nina Papavasiliou, Olivier Elemento, and Rita Shaknovich
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Biology (General) ,QH301-705.5 - Abstract
Changes in DNA methylation are required for the formation of germinal centers (GCs), but the mechanisms of such changes are poorly understood. Activation-induced cytidine deaminase (AID) has been recently implicated in DNA demethylation through its deaminase activity coupled with DNA repair. We investigated the epigenetic function of AID in vivo in germinal center B cells (GCBs) isolated from wild-type (WT) and AID-deficient (Aicda−/−) mice. We determined that the transit of B cells through the GC is associated with marked locus-specific loss of methylation and increased methylation diversity, both of which are lost in Aicda−/− animals. Differentially methylated cytosines (DMCs) between GCBs and naive B cells (NBs) are enriched in genes that are targeted for somatic hypermutation (SHM) by AID, and these genes form networks required for B cell development and proliferation. Finally, we observed significant conservation of AID-dependent epigenetic reprogramming between mouse and human B cells.
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- 2015
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3. Supplementary Table from Epigenetic Activation of Plasmacytoid DCs Drives IFNAR-Dependent Therapeutic Differentiation of AML
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Ricky W. Johnstone, Pilar M. Dominguez, Andrew H. Wei, Andrew C. Perkins, Steven W. Lane, Benjamin T. Kile, Sammy Bedoui, Stefanie Scheu, Daniel D. De Carvalho, Stephin J. Vervoort, Lev M. Kats, Paul J. Hertzog, Simon J. Hogg, Madison J. Kelly, Jens Lichte, Nicole A. de Weerd, Elise Gressier, Antony Y. Matthews, Kate McArthur, Eva Vidacs, Veronique Litalien, Peter J. Fraser, Leonie A. Cluse, Stefan Bjelosevic, Michael Bots, Magnus Zethoven, Gisela Mir Arnau, Timothy Semple, Fernando Rossello, Luciano G. Martelotto, Conor J. Kearney, Claudia Bruedigam, Kym L. Stanley, Izabela Todorovski, and Jessica M. Salmon
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Supplementary Table from Epigenetic Activation of Plasmacytoid DCs Drives IFNAR-Dependent Therapeutic Differentiation of AML
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- 2023
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4. Supplementary Figure from Epigenetic Activation of Plasmacytoid DCs Drives IFNAR-Dependent Therapeutic Differentiation of AML
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Ricky W. Johnstone, Pilar M. Dominguez, Andrew H. Wei, Andrew C. Perkins, Steven W. Lane, Benjamin T. Kile, Sammy Bedoui, Stefanie Scheu, Daniel D. De Carvalho, Stephin J. Vervoort, Lev M. Kats, Paul J. Hertzog, Simon J. Hogg, Madison J. Kelly, Jens Lichte, Nicole A. de Weerd, Elise Gressier, Antony Y. Matthews, Kate McArthur, Eva Vidacs, Veronique Litalien, Peter J. Fraser, Leonie A. Cluse, Stefan Bjelosevic, Michael Bots, Magnus Zethoven, Gisela Mir Arnau, Timothy Semple, Fernando Rossello, Luciano G. Martelotto, Conor J. Kearney, Claudia Bruedigam, Kym L. Stanley, Izabela Todorovski, and Jessica M. Salmon
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Supplementary Figure from Epigenetic Activation of Plasmacytoid DCs Drives IFNAR-Dependent Therapeutic Differentiation of AML
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- 2023
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5. TableS1.xlsx from CDK4/6 Inhibition Promotes Antitumor Immunity through the Induction of T-cell Memory
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Stephin J. Vervoort, Conor J. Kearney, Karen E. Sheppard, Jane Oliaro, Ricky W. Johnstone, Ian A. Parish, Grant A. McArthur, Edwin D. Hawkins, Paul J. Neeson, Paul A. Beavis, Nicole M. Haynes, Izabela Todorovski, Pilar M. Dominguez, Lydia Lim, Jarrod J. Sandow, Laura Kirby, Matteo Costacurta, Joe Jiang Zhu, Deborah Meyran, Luciano G. Martelotto, Kelly M. Ramsbottom, Magnus Zethoven, Isabella Y. Kong, and Emily J. Lelliott
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Supplementary Table S1
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- 2023
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6. Supplementary Figures from CDK4/6 Inhibition Promotes Antitumor Immunity through the Induction of T-cell Memory
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Stephin J. Vervoort, Conor J. Kearney, Karen E. Sheppard, Jane Oliaro, Ricky W. Johnstone, Ian A. Parish, Grant A. McArthur, Edwin D. Hawkins, Paul J. Neeson, Paul A. Beavis, Nicole M. Haynes, Izabela Todorovski, Pilar M. Dominguez, Lydia Lim, Jarrod J. Sandow, Laura Kirby, Matteo Costacurta, Joe Jiang Zhu, Deborah Meyran, Luciano G. Martelotto, Kelly M. Ramsbottom, Magnus Zethoven, Isabella Y. Kong, and Emily J. Lelliott
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Supplementary Figures 1-12
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- 2023
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7. Supplementary Figure 3 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 3. Pano induced pancreatic tumor cell apoptosis.
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- 2023
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8. Supplementary Figure 2 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 2. Pancreatic cells are resistant to VV-gp100 oncolysis but sensitive to CAR T cell-mediated cytotoxicity.
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- 2023
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9. Supplementary Figure 4 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 4. Pano did not enhance the cytotoxicity of CARaMEL cells nor oncolysis of VV-gp100.
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- 2023
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10. Supplementary Figure 1 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 1. Panc02-Her2, KPC-Her2 and 24JK-Her2 cells express comparable levels of Her2.
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- 2023
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11. Supplementary Figure 5 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 5. Pano did not alter Her2 or H2-Db expression on Panc02-Her2 tumor cells in vivo and CARaMEL cells were detectable over 100 days in ACTIV+ Pano treated mice.
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- 2023
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12. Supplementary Figure 8 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 8. Proposed mechanisms and clinical application for the ACTIV+Pano treatment.
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- 2023
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13. Supplementary Figure 7 from A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Clare Y. Slaney, Michael H. Kershaw, Phillip K. Darcy, Ricky W. Johnstone, Belinda Lee, Yuchen Bai, Xin Du, Jack D. Chan, Amanda J. Oliver, Jian Kang, Daniela G.M. Tantalo, Aaron J. Harrison, Pilar M. Dominguez, Bianca von Scheidt, Minyu Wang, and Aesha I. Ali
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Supplementary Figure 7. No cytokine storm was observed in WAP- and MMTV-Her2 mice post the ACTIV+Pano treatment.
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- 2023
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14. CDK4/6 Inhibition Promotes Antitumor Immunity through the Induction of T-cell Memory
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Matteo Costacurta, Edwin D. Hawkins, Ricky W. Johnstone, Grant A. McArthur, Jane Oliaro, Paul J Neeson, Paul A. Beavis, Stephin J. Vervoort, Joe Jiang Zhu, Deborah Meyran, Conor J. Kearney, Emily J. Lelliott, Ian A. Parish, Pilar M. Dominguez, Laura Kirby, Nicole M. Haynes, Lydia Lim, Luciano G. Martelotto, Kelly M Ramsbottom, Magnus Zethoven, Isabella Y. Kong, Karen E. Sheppard, Jarrod J. Sandow, and Izabela Todorovski
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0301 basic medicine ,Pyridines ,medicine.medical_treatment ,T cell ,Antineoplastic Agents ,Breast Neoplasms ,Piperazines ,Memory T Cells ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Immunity ,Cell Line, Tumor ,PD-L1 ,medicine ,Animals ,Humans ,Protein Kinase Inhibitors ,biology ,business.industry ,Cyclin-Dependent Kinase 4 ,Cancer ,Cyclin-Dependent Kinase 6 ,Immunotherapy ,medicine.disease ,Xenograft Model Antitumor Assays ,Immune checkpoint ,Chimeric antigen receptor ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Female ,CDK4/6 Inhibition ,business - Abstract
Pharmacologic inhibitors of cyclin-dependent kinases 4 and 6 (CDK4/6) are an approved treatment for hormone receptor–positive breast cancer and are currently under evaluation across hundreds of clinical trials for other cancer types. The clinical success of these inhibitors is largely attributed to well-defined tumor-intrinsic cytostatic mechanisms, whereas their emerging role as immunomodulatory agents is less understood. Using integrated epigenomic, transcriptomic, and proteomic analyses, we demonstrated a novel action of CDK4/6 inhibitors in promoting the phenotypic and functional acquisition of immunologic T-cell memory. Short-term priming with a CDK4/6 inhibitor promoted long-term endogenous antitumor T-cell immunity in mice, enhanced the persistence and therapeutic efficacy of chimeric antigen receptor T cells, and induced a retinoblastoma-dependent T-cell phenotype supportive of favorable responses to immune checkpoint blockade in patients with melanoma. Together, these mechanistic insights significantly broaden the prospective utility of CDK4/6 inhibitors as clinical tools to boost antitumor T-cell immunity. Significance: Immunologic memory is critical for sustained antitumor immunity. Our discovery that CDK4/6 inhibitors drive T-cell memory fate commitment sheds new light on their clinical activity, which is essential for the design of clinical trial protocols incorporating these agents, particularly in combination with immunotherapy, for the treatment of cancer. This article is highlighted in the In This Issue feature, p. 2355
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- 2021
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15. Inhibition of pyrimidine biosynthesis targets protein translation in AML
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Lorey K. Smith, Gabrielle McDonald, Joan So, Lev Kats, Simon J. Hogg, Alexander C Lewis, Lizzy Pijpers, Kym Stanley, Stephin J. Vervoort, Danielle Ulanet, Pilar M. Dominguez, Emily Gruber, Ricky W. Johnstone, and Josh Murtie
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Chemistry ,YY1 ,hemic and lymphatic diseases ,Cyclin-dependent kinase 5 ,Pyrimidine metabolism ,Dihydroorotate dehydrogenase ,Cancer research ,Myeloid leukemia ,Stem cell ,Gene ,Transcription factor - Abstract
The mitochondrial enzyme dihydroorotate dehydrogenase (DHODH) catalyzes one of the rate-limiting steps in de novo pyrimidine biosynthesis, a pathway that provides essential metabolic precursors for nucleic acids, glycoproteins and phospholipids. DHODH inhibitors (DHODHi) are clinically used for autoimmune diseases and are emerging as a novel class of anti-cancer agents, especially in acute myeloid leukemia (AML) where pyrimidine starvation was recently shown to reverse the characteristic differentiation block in AML cells. Herein we show that DHODH blockade rapidly shuts down protein translation in leukemic stem cells (LSCs) by down-regulation of the multi-functional transcription factor YY1, has potent activity against AML in vivo and is well tolerated with minimal impact on normal blood development. Moreover, we find that ablation of CDK5, a gene that is recurrently deleted in AML and related disorders, increases the sensitivity of AML cells to DHODHi. Our studies provide important molecular insights and identify a potential biomarker for an emerging strategy to target AML.
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- 2021
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16. Abstract A29: A selective HDAC3 inhibitor synergizes with 5-azacytidine in diffuse large B-cell lymphoma
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Pilar M Dominguez, Leonie A Cluse, Noura Tawfic, Peter J Fraser, Sophia Rutaquio, Rachel Lim, Giorgio Inghirami, Gareth Gregory, Michael Dickinson, Ari M Melnick, and Ricky W Johnstone
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General Medicine - Abstract
Diffuse large B-cell lymphoma (DLBCL) is an aggressive lymphoma, with 40% of patients relapsing or refractory to the conventional chemotherapy treatment, usually with fatal consequences. Therefore, more targeted therapies are needed. DLBCL are characterized by profound alterations in the epigenome (histone modifications and DNA methylation) that are correlated with poor survival. While epigenetic drugs are used as anti-cancer treatments, their full potential has not been achieved. One limitation for the implementation of epigenetic-based therapies in the clinic has been its use as single agents; therefore, we explored new combinatorial therapies with the goal to increase efficacy. Our previous studies showed that lymphoma epigenetic programming involves repression of BCL6 target genes. This BCL6-mediated gene silencing in DLBCL is driven by 1) reduced H3K27 acetylation through recruitment of histone deacetylase 3 (HDAC3) and 2) reduced 5-hydroxymethylcytosine (5hmC). We thus tested a therapy consisting of the hypomethylating agent 5-azacytidine (5-Aza) and a specific HDAC3 inhibitor (HDAC3i). DLBCL cell line MD901 was treated with 200nM 5-Aza or vehicle daily for 5 days, with 10uM HDAC3i or vehicle added at days 3 and 5. Analysis at day 8 showed that whereas single agent did not induce cell death based on propidium iodide (PI) staining (vehicle=13.5%, 5-Aza=18%, HDAC3i=14.8% PI+ cells), the combination induced significantly higher cell death (5-Aza+HDAC3i=43.6% PI+ cells). We observed similar increased efficacy of 5-Aza+HDAC3i in OCI-Ly7 and SUDHL-4 cells. We also demonstrated that 5-Aza+HDAC3i acted synergistically in MD901, OCI-Ly7 and SUDHL-4 (combination index (CI) Citation Format: Pilar M Dominguez, Leonie A Cluse, Noura Tawfic, Peter J Fraser, Sophia Rutaquio, Rachel Lim, Giorgio Inghirami, Gareth Gregory, Michael Dickinson, Ari M Melnick, Ricky W Johnstone. A selective HDAC3 inhibitor synergizes with 5-azacytidine in diffuse large B-cell lymphoma [abstract]. In: Proceedings of the Third AACR International Meeting: Advances in Malignant Lymphoma: Maximizing the Basic-Translational Interface for Clinical Application; 2022 Jun 23-26; Boston, MA. Philadelphia (PA): AACR; Blood Cancer Discov 2022;3(5_Suppl):Abstract nr A29.
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- 2022
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17. Epigenetic function of Activation-Induced Cytidine Deaminase (AID) and its link to lymphomagenesis
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Pilar M Dominguez and Rita eShaknovich
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DNA Methylation ,epigenetics ,B cells ,activation-induced cytidine deaminase (AID) ,Lymphomagenesis ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Activation-induced cytidine deaminase (AID) is essential for somatic hypermutation (SHM) and class switch recombination (CSR) of immunoglobulin (Ig) genes during B cell maturation and immune response. Expression of AID is tightly regulated due to its mutagenic and recombinogenic potential, which is known to target not only Ig genes, but also non-Ig genes, contributing to lymphomagenesis. In recent years a new epigenetic function of AID and its link to DNA demethylation came to light in several developmental systems. In this review, we summarize existing evidence linking deamination of unmodified and modified cytidine by AID to base-excision repair (BER) and mismatch repair (MMR) machinery resulting in passive or active removal of DNA methylation mark, with the focus on B cell biology. We also discuss potential contribution of AID-dependent DNA hypomethylation to lymphomagenesis.
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- 2014
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18. A Histone Deacetylase Inhibitor, Panobinostat, Enhances Chimeric Antigen Receptor T-cell Antitumor Effect Against Pancreatic Cancer
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Daniela Gm Tantalo, Clare Y Slaney, Amanda J Oliver, Jack D Chan, Aaron J Harrison, Belinda Lee, Minyu Wang, Jian Kang, Bianca von Scheidt, Aesha I. Ali, Michael H. Kershaw, Phillip K. Darcy, Yuchen Bai, Ricky W. Johnstone, Pilar M. Dominguez, and Xin Du
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Cancer Research ,medicine.drug_class ,T cell ,T-Lymphocytes ,Receptors, Antigen, T-Cell ,Biology ,Immunotherapy, Adoptive ,chemistry.chemical_compound ,Mice ,Pancreatic cancer ,Panobinostat ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Receptors, Chimeric Antigen ,Histone deacetylase inhibitor ,T-cell receptor ,Cancer ,medicine.disease ,Xenograft Model Antitumor Assays ,Tumor antigen ,Chimeric antigen receptor ,Histone Deacetylase Inhibitors ,Pancreatic Neoplasms ,medicine.anatomical_structure ,Oncology ,chemistry ,Cancer research - Abstract
Purpose: In this article, we describe a combination chimeric antigen receptor (CAR) T-cell therapy that eradicated the majority of tumors in two immunocompetent murine pancreatic cancer models and a human pancreatic cancer xenograft model. Experimental Design: We used a dual-specific murine CAR T cell that expresses a CAR against the Her2 tumor antigen, and a T-cell receptor (TCR) specific for gp100. As gp100 is also known as pMEL, the dual-specific CAR T cells are thus denoted as CARaMEL cells. A vaccine containing live vaccinia virus coding a gp100 minigene (VV-gp100) was administered to the recipient mice to stimulate CARaMEL cells. The treatment also included the histone deacetylase inhibitor panobinostat (Pano). Results: The combination treatment enabled significant suppression of Her2+ pancreatic cancers leading to the eradication of the majority of the tumors. Besides inducing cancer cell apoptosis, Pano enhanced CAR T-cell gene accessibility and promoted CAR T-cell differentiation into central memory cells. To test the translational potential of this approach, we established a method to transduce human T cells with an anti-Her2 CAR and a gp100-TCR. The exposure of the human T cells to Pano promoted a T-cell central memory phenotype and the combination treatment of human CARaMEL cells and Pano eradicated human pancreatic cancer xenografts in mice. Conclusions: We propose that patients with pancreatic cancer could be treated using a scheme that contains dual-specific CAR T cells, a vaccine that activates the dual-specific CAR T cells through their TCR, and the administration of Pano.
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- 2021
19. Epigenetic reprogramming of plasmacytoid dendritic cells drives type I interferon-dependent differentiation of acute myeloid leukemias for therapeutic benefit
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Conor J. Kearney, Madison J. Kelly, Paul J. Hertzog, Andrew H. Wei, Luciano G. Martelotto, Gisela Mir-Arnau, Magnus Zethoven, Elise Gressier, Michael Bots, Leonie A. Cluse, Kate McArthur, Jessica M. Salmon, Daniel D. De Carvalho, Jens Lichte, Izabela Todorovski, Stefanie Scheu, Sammy Bedoui, Tim Semple, Lev Kats, Simon J. Hogg, Fernando J. Rossello, Pilar M. Dominguez, Nicky de Weerd, Eva Vidacs, Benjamin T. Kile, Kym Stanley, Stephin J. Vervoort, and Ricky W. Johnstone
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Cell type ,medicine.medical_treatment ,Cellular differentiation ,Immunotherapy ,Biology ,Pediatric cancer ,chemistry.chemical_compound ,Immune system ,chemistry ,Interferon ,Panobinostat ,Cancer research ,medicine ,Epigenetics ,medicine.drug - Abstract
Pharmacological inhibition of epigenetic enzymes can have therapeutic benefit, particularly against hematological malignancies. While these agents can affect tumor cell growth and proliferation, recent studies have demonstrated that pharmacological de-regulation of epigenetic modifiers may additionally mediate anti-tumor immune responses. Here we discovered a novel mechanism of immune regulation through the inhibition of histone deacetylases (HDACs). In a genetically engineered model of t(8;21) AML, leukemia cell differentiation and therapeutic benefit mediated by the HDAC inhibitor panobinostat required activation of the type I interferon (IFN) signaling pathway. Plasmacytoid dendritic cells (pDCs) were identified as the cells producing type I IFN in response to panobinostat, through transcriptional activation of IFN genes concomitant with increased H3K27 acetylation at these loci. Depletion of pDCs abrogated panobinostat-mediated activation of type I IFN signaling in leukemia cells and impaired therapeutic efficacy, while combined treatment of panobinostat and recombinant IFNα improved therapeutic outcomes. These discoveries offer a new therapeutic approach for t(8;21) AML and demonstrate that epigenetic rewiring of pDCs enhances anti-tumor immunity, opening the possibility of exploiting this cell type as a new target for immunotherapy.
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- 2020
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20. Epigenetic Activation of Plasmacytoid DCs Drives IFNAR-Dependent Therapeutic Differentiation of AML
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Jessica M. Salmon, Izabela Todorovski, Kym L. Stanley, Claudia Bruedigam, Conor J. Kearney, Luciano G. Martelotto, Fernando Rossello, Timothy Semple, Gisela Mir Arnau, Magnus Zethoven, Michael Bots, Stefan Bjelosevic, Leonie A. Cluse, Peter J. Fraser, Veronique Litalien, Eva Vidacs, Kate McArthur, Antony Y. Matthews, Elise Gressier, Nicole A. de Weerd, Jens Lichte, Madison J. Kelly, Simon J. Hogg, Paul J. Hertzog, Lev M. Kats, Stephin J. Vervoort, Daniel D. De Carvalho, Stefanie Scheu, Sammy Bedoui, Benjamin T. Kile, Steven W. Lane, Andrew C. Perkins, Andrew H. Wei, Pilar M. Dominguez, and Ricky W. Johnstone
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Histone Deacetylase Inhibitors ,Leukemia, Myeloid, Acute ,Oncology ,Panobinostat ,Humans ,Cell Differentiation ,Dendritic Cells ,Histone Deacetylases ,Epigenesis, Genetic - Abstract
Pharmacologic inhibition of epigenetic enzymes can have therapeutic benefit against hematologic malignancies. In addition to affecting tumor cell growth and proliferation, these epigenetic agents may induce antitumor immunity. Here, we discovered a novel immunoregulatory mechanism through inhibition of histone deacetylases (HDAC). In models of acute myeloid leukemia (AML), leukemia cell differentiation and therapeutic benefit mediated by the HDAC inhibitor (HDACi) panobinostat required activation of the type I interferon (IFN) pathway. Plasmacytoid dendritic cells (pDC) produced type I IFN after panobinostat treatment, through transcriptional activation of IFN genes concomitant with increased H3K27 acetylation at these loci. Depletion of pDCs abrogated panobinostat-mediated induction of type I IFN signaling in leukemia cells and impaired therapeutic efficacy, whereas combined treatment with panobinostat and IFNα improved outcomes in preclinical models. These discoveries offer a new therapeutic approach for AML and demonstrate that epigenetic rewiring of pDCs enhances antitumor immunity, opening the possibility of exploiting this approach for immunotherapies. Significance: We demonstrate that HDACis induce terminal differentiation of AML through epigenetic remodeling of pDCs, resulting in production of type I IFN that is important for the therapeutic effects of HDACis. The study demonstrates the important functional interplay between the immune system and leukemias in response to HDAC inhibition. This article is highlighted in the In This Issue feature, p. 1397
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- 2020
21. TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis
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Olivier A. Bernard, Ari Melnick, Xiaowen Chen, Hussein Ghamlouch, Sheng Li, Pilar M. Dominguez, Wojciech Rosikiewicz, and Said Aoufouchi
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0303 health sciences ,Multidisciplinary ,CD40 ,Somatic cell ,B-cell receptor ,SciAdv r-articles ,Germinal center ,Somatic hypermutation ,Cell Biology ,Biology ,Cell biology ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,DNA methylation ,medicine ,biology.protein ,Epigenetics ,Research Articles ,B cell ,Research Article ,Cancer ,030304 developmental biology - Abstract
TET2 deficiency reprograms B cell epigenome linked to lymphomagenesis., The TET2 DNA hydroxymethyltransferase is frequently disrupted by somatic mutations in diffuse large B cell lymphomas (DLBCLs), a tumor that originates from germinal center (GC) B cells. Here, we show that TET2 deficiency leads to DNA hypermethylation of regulatory elements in GC B cells, associated with silencing of the respective genes. This hypermethylation affects the binding of transcription factors including those involved in exit from the GC reaction and involves pathways such as B cell receptor, antigen presentation, CD40, and others. Normal GC B cells manifest a typical hypomethylation signature, which is caused by AID, the enzyme that mediates somatic hypermutation. However, AID-induced demethylation is markedly impaired in TET2-deficient GC B cells, suggesting that AID epigenetic effects are partially dependent on TET2. Last, we find that TET2 mutant DLBCLs also manifest the aberrant TET2-deficient GC DNA methylation signature, suggesting that this epigenetic pattern is maintained during and contributes to lymphomagenesis.
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- 2020
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22. AICDA drives epigenetic heterogeneity and accelerates germinal center-derived lymphomagenesis
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Paola Ghione, Iannis Aifantis, David Redmond, Zhengming Chen, Rita Shaknovich, Daisuke Ennishi, Randy D. Gascoyne, David W. Scott, Giorgio Inghirami, Luisa Cimmino, Matt Teater, Ari Melnick, Jayanta Chaudhuri, Olivier Elemento, and Pilar M. Dominguez
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0301 basic medicine ,Science ,General Physics and Astronomy ,Mice, Transgenic ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Epigenesis, Genetic ,03 medical and health sciences ,chemistry.chemical_compound ,immune system diseases ,Cytidine Deaminase ,hemic and lymphatic diseases ,Activation-induced (cytidine) deaminase ,Animals ,Humans ,Epigenetics ,lcsh:Science ,Epigenomics ,Mice, Knockout ,B-Lymphocytes ,Mice, Inbred BALB C ,Multidisciplinary ,Gene Expression Profiling ,Germinal center ,Cytidine ,General Chemistry ,Cytidine deaminase ,Germinal Center ,Gene Expression Regulation, Neoplastic ,Mice, Inbred C57BL ,030104 developmental biology ,DNA demethylation ,chemistry ,Mutation ,DNA methylation ,biology.protein ,Cancer research ,lcsh:Q ,Lymphoma, Large B-Cell, Diffuse - Abstract
Epigenetic heterogeneity is emerging as a feature of tumors. In diffuse large B-cell lymphoma (DLBCL), increased cytosine methylation heterogeneity is associated with poor clinical outcome, yet the underlying mechanisms remain unclear. Activation-induced cytidine deaminase (AICDA), an enzyme that mediates affinity maturation and facilitates DNA demethylation in germinal center (GC) B cells, is required for DLBCL pathogenesis and linked to inferior outcome. Here we show that AICDA overexpression causes more aggressive disease in BCL2-driven murine lymphomas. This phenotype is associated with increased cytosine methylation heterogeneity, but not with increased AICDA-mediated somatic mutation burden. Reciprocally, the cytosine methylation heterogeneity characteristic of normal GC B cells is lost upon AICDA depletion. These observations are relevant to human patients, since DLBCLs with high AICDA expression manifest increased methylation heterogeneity vs. AICDA-low DLBCLs. Our results identify AICDA as a driver of epigenetic heterogeneity in B-cell lymphomas with potential significance for other tumors with aberrant expression of cytidine deaminases., In diffuse large B-cell lymphoma (DLBCL) increased epigenetic heterogeneity in the form of cytosine methylation is known to link to a poor clinical outcome. Here, the authors show that AICDA, an enzyme required for DLBCL pathogenesis, increases cytosine methylation heterogeneity.
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- 2018
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23. The new frontier of epigenetic heterogeneity in B-cell neoplasms
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Pilar M. Dominguez, Rita Shaknovich, and Matt Teater
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0301 basic medicine ,Lymphoma, B-Cell ,Computational biology ,Biology ,Epigenesis, Genetic ,Genetic Heterogeneity ,03 medical and health sciences ,0302 clinical medicine ,Leukemia, B-Cell ,medicine ,Animals ,Humans ,Epigenetics ,B cell ,Genetic heterogeneity ,Germinal center ,Hematology ,Epigenome ,DNA Methylation ,Germinal Center ,Gene Expression Regulation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,Feature (computer vision) ,030220 oncology & carcinogenesis ,DNA methylation ,Signal Transduction - Abstract
There is mounting evidence that heterogeneity of the epigenome is a feature of many cancers, including B-cell lymphomas, and presents important clinical implications. The purpose of this review is to explain the biological and clinical relevance of this epigenetic phenomenon in B-cell neoplasms.Here, we summarize new findings demonstrating that B-cell lymphomas display increased DNA methylation heterogeneity compared to their normal counterparts. This plasticity of cytosine methylation manifests both as intertumor and intratumor heterogeneity and is associated with worse prognosis and poor clinical outcome in lymphoma patients. Recent studies of different subtypes of B-cell lymphomas have revealed that epigenetic aberrations and heterogeneous cytosine methylation patterning are common features of all neoplasms derived from B-lymphocytes, irrespective of maturation stage. With regard to mechanisms driving this process, recent reports suggest that cytosine methylation heterogeneity arises through passive and active processes. One factor implicated in active generation of cytosine methylation heterogeneity is activation-induced cytidine deaminase, which mediates DNA methylation changes and introduces epigenetic heterogeneity in normal germinal center B cells, the cells of origin of mature B-cell neoplasms such as diffuse large B-cell lymphoma and follicular lymphoma.Understanding the scope and mechanism of epigenetic heterogeneity in cancer is of paramount importance to our understanding of clonal plasticity and treatment responses in B-cell lymphomas.
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- 2017
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24. The many layers of epigenetic dysfunction in B-cell lymphomas
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Ari Melnick, Yanwen Jiang, and Pilar M. Dominguez
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0301 basic medicine ,Lymphoma, B-Cell ,Follicular lymphoma ,Biology ,Somatic evolution in cancer ,Dioxygenases ,Epigenesis, Genetic ,Clonal Evolution ,Cytosine ,03 medical and health sciences ,immune system diseases ,Proto-Oncogene Proteins ,hemic and lymphatic diseases ,medicine ,Humans ,Genes, Tumor Suppressor ,Gene Silencing ,Epigenetics ,Promoter Regions, Genetic ,Lymphoma, Follicular ,B cell ,Epigenesis ,Germinal center ,Histone-Lysine N-Methyltransferase ,Hematology ,Epigenome ,DNA Methylation ,Germinal Center ,Prognosis ,medicine.disease ,Chromatin ,Lymphoma ,DNA-Binding Proteins ,Gene Expression Regulation, Neoplastic ,Cell Transformation, Neoplastic ,Enhancer Elements, Genetic ,030104 developmental biology ,medicine.anatomical_structure ,Mutation ,Histone Methyltransferases ,Cancer research ,Lymphoma, Large B-Cell, Diffuse ,Signal Transduction - Abstract
Perturbation of the epigenome is emerging as a central driving force in the pathogenesis of diffuse large B-cell lymphomas (DLBCL) and follicular lymphoma. The purpose of this review is to explain how alteration of different layers of the epigenome contributes to the biology and clinical features of these tumors.Key new findings implicate DNA methylation heterogeneity as a core feature of DLBCL. Epigenetic diversity is linked to unfavorable clinical outcomes, clonal selection at relapse, and is driven at least in part because of the actions of activation-induced cytosine deaminase, which is a unique feature of B-cell lymphomas. Somatic mutations in histone modifier genes drive lymphomagenesis through the establishment of aberrant gene-specific histone modification signatures. For example, EZH2 somatic mutations drive silencing of bivalent gene promoters through histone 3 lysine 27 trimethylation, whereas KMT2D (MLL2) mutations disrupt specific sets of enhancers through depletion of histone 3 lysine 4 mono and dimethylation (H3K4me1/me2).Appreciation of the epigenome in determining lymphoma clonal heterogeneity and in driving lymphoma phenotypes through altered promoter and enhancer histone modification profiles is leading to a paradigm shift in how we understand and design therapies for DLBCL and follicular lymphoma.
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- 2016
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25. Abstract PO-05: TET2 deficiency alters the epigenome of germinal center B cells, contributing to lymphoma formation
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Olivier A. Bernard, Wojciech Rosikiewicz, Xiaowen Chen, Pilar M. Dominguez, Ari Melnick, Ricky W. Johnstone, Said Aoufouchi, Hussein Ghamlouch, and Sheng Li
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Chemistry ,Germinal center ,General Medicine ,medicine.disease ,BCL6 ,Molecular biology ,Lymphoma ,Malignant transformation ,Haematopoiesis ,hemic and lymphatic diseases ,DNA methylation ,medicine ,Epigenetics ,Stem cell - Abstract
Diffuse large B-cell lymphomas (DLBCLs) are aggressive tumors derived from germinal center (GC) B cells. Despite progress in the treatment of DLBCL, approximately 40% of patients relapse or are refractory to the treatment, which usually leads to fatality. DLBCLs are characterized by aberrant DNA methylation and this feature correlates with poor clinical outcome. We and others have shown that deregulated epigenetic mechanisms contribute to lymphoma formation. Particularly, we have demonstrated that TET2, an enzyme that converts methylcytosine (mC) into hydroxymethylcytosine (hmC) and is mutated in ~10% of DLBCLs, is a B-cell tumor suppressor. GC-specific deletion of TET2 (Cg1Cre/Tet2-/-) resulted in accelerated lymphomagenesis in DLBCL mouse models driven by BCL6 overexpression, with 100% Cg1Cre/Tet2-/-;ImBcl6 mice developing lymphoma at 7 months compared to only 50% in ImBcl6 control mice. In addition, TET2 deletion in hematopoietic stem cells (VavCre/Tet2-/-) induced GC B-cell hyperplasia (B220+GL7+CD95+ cells; 10% VavCre/Tet2-/- vs 5% VavCre/Tet2+/+), promoting malignant transformation. Further analysis of the GC reaction revealed that TET2-deficient GC B cells displayed anomalous patterns of DNA methylation. GC B cells from VavCre/Tet2-/- mice presented 1) focal loss of hmC—using hMeDIPseq—with 25,000 differentially hydroxymethylated regions (DHMR) lost compared to VavCre/Tet2+/+ GC B cells and 2) increased mC—using RRBS—with almost 11,000 differentially methylated cytosines (DMCs), 84% hypermethylated, compared to VavCre/Tet2+/+ GC B cells. TET2-mediated reduction of hmC and hypermethylation affected enhancers and promoters, respectively, of genes mediating GC exit and terminal differentiation of GC B cells, especially those regulated at enhancers by the opposing functions of CREBBP and HDAC3. We are currently investigating the potential cooperative role between TET2-mediated hmC and CREBBP-mediated H3K27Ac, supported by reduced H3K27Ac at enhancers activated by CREBBP in VavCre/Tet2-/- GC B cells and mutual exclusion between TET2-mutant and CREBBP-mutant primary DLBCL. RNA sequencing analysis revealed that the genes epigenetically regulated by TET2 were aberrantly repressed in VavCre/Tet2+/+ GC B cells, explaining the observed GC hyperplasia in TET2-deficient GC B cells since these genes control the differentiation of GC B cells into plasma cells. Importantly, TET2-mutant DLBCL primary samples display a similar repressive transcriptional signature associated with GC B-cell terminal differentiation. Our data show how TET2-induced epigenetic changes contribute to lymphoma development and highlight the multilayered nature of the epigenome, which can be therapeutically exploited. We are evaluating the therapeutic potential in TET2-mutant DLBCL of a combinatorial therapy consisting of DNA methylation inhibitors (DNMTi), to revert hypermethylation at promoters, plus specific HDAC3 inhibitors, to compensate for the loss of hmC at enhancers. Citation Format: Pilar M. Dominguez, Wojciech Rosikiewicz, Xiaowen Chen, Hussein Ghamlouch, Said Aoufouchi, Olivier A. Bernard, Ari M. Melnick, Sheng Li, Ricky W. Johnstone. TET2 deficiency alters the epigenome of germinal center B cells, contributing to lymphoma formation [abstract]. In: Proceedings of the AACR Virtual Meeting: Advances in Malignant Lymphoma; 2020 Aug 17-19. Philadelphia (PA): AACR; Blood Cancer Discov 2020;1(3_Suppl):Abstract nr PO-05.
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- 2020
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26. Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations
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Ashlesha Muley, Ashish Saxena, Sarah C. Rutherford, Doron Betel, Jennifer Ishii, Xabier Agirre, Angela A. Fachel, Seema Sawh, Pilar M. Dominguez, Eloisi Caldas Lopes, Fabian Correa, Kristy L. Richards, Nyasha Chambwe, Rita Shaknovich, Sheng Li, and Yanwen Jiang
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0301 basic medicine ,Stromal cell ,Immunology ,Biology ,Biochemistry ,03 medical and health sciences ,Extracellular Vesicles ,0302 clinical medicine ,Cell Line, Tumor ,medicine ,TSG101 ,Humans ,RNA, Neoplasm ,Liquid biopsy ,Lymphoid Neoplasia ,RNA ,Cell Biology ,Hematology ,medicine.disease ,Cell biology ,Neoplasm Proteins ,030104 developmental biology ,Cell culture ,030220 oncology & carcinogenesis ,Mutation testing ,Lymphoma, Large B-Cell, Diffuse ,Diffuse large B-cell lymphoma ,CD81 - Abstract
The biological role of extracellular vesicles (EVs) in diffuse large B-cell lymphoma (DLBCL) initiation and progression remains largely unknown. We characterized EVs secreted by 5 DLBCL cell lines, a primary DLBCL tumor, and a normal control B-cell sample, optimized their purification, and analyzed their content. We found that DLBCLs secreted large quantities of CD63, Alix, TSG101, and CD81 EVs, which can be extracted using an ultracentrifugation-based method and traced by their cell of origin surface markers. We also showed that tumor-derived EVs can be exchanged between lymphoma cells, normal tonsillar cells, and HK stromal cells. We then examined the content of EVs, focusing on isolation of high-quality total RNA. We sequenced the total RNA and analyzed the nature of RNA species, including coding and noncoding RNAs. We compared whole-cell and EV-derived RNA composition in benign and malignant B cells and discovered that transcripts from EVs were involved in many critical cellular functions. Finally, we performed mutational analysis and found that mutations detected in EVs exquisitely represented mutations in the cell of origin. These results enhance our understanding and enable future studies of the role that EVs may play in the pathogenesis of DLBCL, particularly with regards to the exchange of genomic information. Current findings open a new strategy for liquid biopsy approaches in disease monitoring.
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- 2018
27. TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis
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Olivier A. Bernard, Wojciech Rosikiewicz, Rita Shaknovich, Michael R. Green, María Fernández, Iannis Aifantis, Enguerran Mouly, Miguel Torres-Martin, Alan H. Shih, Saber Tadros, Ross L. Levine, Véronique Della-Valle, Ari Melnick, Luisa Cimmino, Matt Durant, Pilar M. Dominguez, Nathalie Droin, Patrycja Pawlikowska, Said Aoufouchi, Parveen Kumar, Matt Teater, Wayne Tam, Wendy Béguelin, Marine Armand, Martín A. Rivas, Hussein Ghamlouch, Giorgio Inghirami, Mark A. Rubin, Lorena Fontan, Olivier Elemento, Ashley S. Doane, Samaneh Motanagh, Maria E. Figueroa, and Sheng Li
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0301 basic medicine ,Somatic cell ,Plasma Cells ,Mice, Transgenic ,Biology ,medicine.disease_cause ,Dioxygenases ,Epigenesis, Genetic ,03 medical and health sciences ,0302 clinical medicine ,Germline mutation ,Proto-Oncogene Proteins ,PRDM1 ,Plasma cell differentiation ,medicine ,Animals ,Humans ,Loss function ,B cell ,Mice, Knockout ,Mutation ,Hyperplasia ,Gene Expression Profiling ,Germinal center ,Cell Differentiation ,Germinal Center ,Hematopoietic Stem Cells ,CREB-Binding Protein ,DNA-Binding Proteins ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Cancer research ,Lymphoma, Large B-Cell, Diffuse ,Positive Regulatory Domain I-Binding Factor 1 ,030215 immunology - Abstract
TET2 somatic mutations occur in ∼10% of diffuse large B-cell lymphomas (DLBCL) but are of unknown significance. Herein, we show that TET2 is required for the humoral immune response and is a DLBCL tumor suppressor. TET2 loss of function disrupts transit of B cells through germinal centers (GC), causing GC hyperplasia, impaired class switch recombination, blockade of plasma cell differentiation, and a preneoplastic phenotype. TET2 loss was linked to focal loss of enhancer hydroxymethylation and transcriptional repression of genes that mediate GC exit, such as PRDM1. Notably, these enhancers and genes are also repressed in CREBBP-mutant DLBCLs. Accordingly, TET2 mutation in patients yields a CREBBP-mutant gene-expression signature, CREBBP and TET2 mutations are generally mutually exclusive, and hydroxymethylation loss caused by TET2 deficiency impairs enhancer H3K27 acetylation. Hence, TET2 plays a critical role in the GC reaction, and its loss of function results in lymphomagenesis through failure to activate genes linked to GC exit signals. Significance: We show that TET2 is required for exit of the GC, B-cell differentiation, and is a tumor suppressor for mature B cells. Loss of TET2 phenocopies CREBBP somatic mutation. These results advocate for sequencing TET2 in patients with lymphoma and for the testing of epigenetic therapies to treat these tumors. See related commentary by Shingleton and Dave, p. 1515. This article is highlighted in the In This Issue feature, p. 1494
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- 2018
28. Liver X Receptor Nuclear Receptors Are Transcriptional Regulators of Dendritic Cell Chemotaxis
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Jonathan Matalonga, Susana Beceiro, Peter Tontonoz, Félix A. López, Santiago Partida-Sanchez, Noelia A-Gonzalez, Laszlo Nagy, José Ángel Guillén, Carlos Ardavín, Tamer Sallam, Cristina Delgado-Martin, Attila Pap, Mercedes Diaz, Antonio Castrillo, Cynthia Hong, Carlos Tabraue, Pilar M. Dominguez, Zsolt Czimmerer, Annabel F. Valledor, Germán Gallardo, and José Luis Rodríguez-Fernández
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0301 basic medicine ,Leukocyte migration ,Receptors, Cytoplasmic and Nuclear ,Inflammation ,Biology ,Mice ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Animals ,Liver X receptor ,Molecular Biology ,Cells, Cultured ,Liver X Receptors ,Mice, Knockout ,Regulation of gene expression ,Chemotaxis ,Macrophages ,Dendritic Cells ,Cell Biology ,Lipid Metabolism ,Orphan Nuclear Receptors ,ADP-ribosyl Cyclase 1 ,Cell biology ,Mice, Inbred C57BL ,030104 developmental biology ,Nuclear receptor ,lipids (amino acids, peptides, and proteins) ,medicine.symptom ,Signal transduction ,Dendritic cell chemotaxis ,Signal Transduction ,Research Article ,030215 immunology - Abstract
The liver X receptors (LXRs) are ligand-activated nuclear receptors with established roles in the maintenance of lipid homeostasis in multiple tissues. LXRs exert additional biological functions as negative regulators of inflammation, particularly in macrophages. However, the transcriptional responses controlled by LXRs in other myeloid cells, such as dendritic cells (DCs), are still poorly understood. Here we used gain- and loss-of-function models to characterize the impact of LXR deficiency on DC activation programs. Our results identified an LXR-dependent pathway that is important for DC chemotaxis. LXR-deficient mature DCs are defective in stimulus-induced migration in vitro and in vivo. Mechanistically, we show that LXRs facilitate DC chemotactic signaling by regulating the expression of CD38, an ectoenzyme important for leukocyte trafficking. Pharmacological or genetic inactivation of CD38 activity abolished the LXR-dependent induction of DC chemotaxis. Using the low-density lipoprotein receptor-deficient (LDLR−/−) LDLR−/− mouse model of atherosclerosis, we also demonstrated that hematopoietic CD38 expression is important for the accumulation of lipid-laden myeloid cells in lesions, suggesting that CD38 is a key factor in leukocyte migration during atherogenesis. Collectively, our results demonstrate that LXRs are required for the efficient emigration of DCs in response to chemotactic signals during inflammation.
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- 2018
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29. DNA Methylation Dynamics of Germinal Center B Cells Are Mediated by AID
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Aparna Vasanthakumar, Nyasha Chambwe, Lucy A. Godley, F. Nina Papavasiliou, Jennifer Ishii, Rita Shaknovich, Olivier Elemento, Bao Q. Vuong, Matthias Kormaksson, David Redmond, Ari Melnick, Jayanta Chaudhuri, Matt Teater, and Pilar M. Dominguez
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Somatic hypermutation ,Biology ,Lymphocyte Activation ,Article ,General Biochemistry, Genetics and Molecular Biology ,Epigenesis, Genetic ,Cytosine ,Mice ,Cell Movement ,Cytidine Deaminase ,Activation-induced (cytidine) deaminase ,Animals ,Humans ,Epigenetics ,lcsh:QH301-705.5 ,Conserved Sequence ,Cell Proliferation ,Mice, Knockout ,Genetics ,B-Lymphocytes ,Mice, Inbred BALB C ,Germinal center ,Cell Differentiation ,Cytidine deaminase ,DNA Methylation ,Germinal Center ,Molecular biology ,DNA demethylation ,lcsh:Biology (General) ,DNA methylation ,biology.protein ,Reprogramming - Abstract
SummaryChanges in DNA methylation are required for the formation of germinal centers (GCs), but the mechanisms of such changes are poorly understood. Activation-induced cytidine deaminase (AID) has been recently implicated in DNA demethylation through its deaminase activity coupled with DNA repair. We investigated the epigenetic function of AID in vivo in germinal center B cells (GCBs) isolated from wild-type (WT) and AID-deficient (Aicda−/−) mice. We determined that the transit of B cells through the GC is associated with marked locus-specific loss of methylation and increased methylation diversity, both of which are lost in Aicda−/− animals. Differentially methylated cytosines (DMCs) between GCBs and naive B cells (NBs) are enriched in genes that are targeted for somatic hypermutation (SHM) by AID, and these genes form networks required for B cell development and proliferation. Finally, we observed significant conservation of AID-dependent epigenetic reprogramming between mouse and human B cells.
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- 2015
30. Epigenetic Function of Activation-Induced Cytidine Deaminase and Its Link to Lymphomagenesis
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Pilar M Dominguez and Rita eShaknovich
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lcsh:Immunologic diseases. Allergy ,Genetics ,B cells ,DNA methylation ,biology ,epigenetics ,activation-induced cytidine deaminase (AID) ,activation-induced cytidine deaminase ,Immunology ,Somatic hypermutation ,Cytidine ,Cytidine deaminase ,Review Article ,chemistry.chemical_compound ,DNA demethylation ,lymphomagenesis ,chemistry ,Activation-induced (cytidine) deaminase ,biology.protein ,Immunology and Allergy ,DNA mismatch repair ,Epigenetics ,lcsh:RC581-607 - Abstract
Activation-induced cytidine deaminase (AID) is essential for somatic hypermutation (SHM) and class switch recombination (CSR) of immunoglobulin (Ig) genes during B cell maturation and immune response. Expression of AID is tightly regulated due to its mutagenic and recombinogenic potential, which is known to target not only Ig genes, but also non-Ig genes, contributing to lymphomagenesis. In recent years a new epigenetic function of AID and its link to DNA demethylation came to light in several developmental systems. In this review, we summarize existing evidence linking deamination of unmodified and modified cytidine by AID to base-excision repair (BER) and mismatch repair (MMR) machinery resulting in passive or active removal of DNA methylation mark, with the focus on B cell biology. We also discuss potential contribution of AID-dependent DNA hypomethylation to lymphomagenesis.
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- 2014
31. IL-4 blocks TH1-polarizing/inflammatory cytokine gene expression during monocyte-derived dendritic cell differentiation through histone hypoacetylation
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Pilar Martín, Carlos Ardavín, Leticia González-Cintado, María Minguito de la Escalera, Gloria Martínez del Hoyo, Pilar M. Dominguez, María López-Bravo, and Carlos del Fresno
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medicine.medical_treatment ,Immunology ,Dendritic cell differentiation ,Biology ,Basophil ,Lymphocyte Activation ,Monocytes ,Histones ,Mice ,Th2 Cells ,medicine ,Hypersensitivity ,Immunology and Allergy ,Cytotoxic T cell ,Animals ,Antigens, Dermatophagoides ,Promoter Regions, Genetic ,Interleukin 4 ,Cells, Cultured ,Mice, Knockout ,Toll-like receptor ,Gene Expression Profiling ,Pyroglyphidae ,Acetylation ,Cell Differentiation ,Dendritic cell ,Dendritic Cells ,Th1 Cells ,Molecular biology ,Mice, Inbred C57BL ,Cytokine ,Trichostatin A ,medicine.anatomical_structure ,Gene Expression Regulation ,Cytokines ,Interleukin-4 ,Inflammation Mediators ,medicine.drug - Abstract
Background Whereas recent research has characterized the mechanism by which dendritic cells (DCs) induce T H 1/T H 17 responses, the functional specialization enabling DCs to polarize T H 2 responses remains undefined. Because IL-4 is essential during T H 2 responses not only by acting on CD4 + T cells through the activation of GATA-3 but also by regulating IgE class-switching, epithelial cell permeability, and muscle contractility, we hypothesized that IL-4 could also have a role in the conditioning of DCs during T H 2 responses. Objective We sought to analyze whether IL-4 exerts an immunomodulatory function on DCs during their differentiation, leading to their functional specialization for the induction of T H 2 responses. Methods Monocyte-derived DCs (moDCs) conditioned by IL-4 during their differentiation (IL-4–conditioned moDCs [IL-4–moDCs]) were analyzed for T H 1-polarizing/inflammatory cytokine production in response to Toll-like receptor stimulation. The acetylation level of the promoters of the genes encoding these cytokines was analyzed by using chromatin immunoprecipitation. Gene expression profiling of IL-4–moDCs was defined by using mouse genome microarrays. IL-4–moDCs were tested for their capacity to induce house dust mite–mediated allergic reactions. Results Our data suggest that IL-4 inhibits T H 1-polarizing/inflammatory cytokine gene expression on IL-4–moDCs through the deacetylation of the promoters of these genes, leading to their transcriptional repression. Microarray analyses confirmed that IL-4 upregulated T H 2-related genes as eosinophil-associated ribonucleases, eosinophil/basophil chemokines, and M2 genes. IL-4 licensed moDCs for the induction of T H 2 responses, causing house dust mite–mediated allergic airway inflammation. Conclusion This study describes a new role for IL-4 by demonstrating that moDCs are conditioned by IL-4 for the induction of T H 2 responses by blocking T H 1-polarizing/inflammatory cytokine production through histone hypoacetylation and upregulating T H 2-related genes.
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- 2013
32. Statins inhibit iNOS-mediated microbicidal potential of activated monocyte-derived dendritic cells by an IFN-β-dependent mechanism
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María López-Bravo, Carlos Ardavín, Ulrich Kalinke, and Pilar M. Dominguez
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p38 mitogen-activated protein kinases ,Immunology ,Blotting, Western ,Nitric Oxide Synthase Type II ,Enzyme-Linked Immunosorbent Assay ,Cell Separation ,Biology ,Polymerase Chain Reaction ,Monocytes ,Proinflammatory cytokine ,Mice ,Immune system ,Immunity ,medicine ,Immunology and Allergy ,Animals ,Listeriosis ,Lovastatin ,Autocrine signalling ,Receptor ,Microscopy, Confocal ,Cell Differentiation ,Dendritic Cells ,Interferon-beta ,Flow Cytometry ,Mice, Inbred C57BL ,Monocyte differentiation ,lipids (amino acids, peptides, and proteins) ,Female ,Hydroxymethylglutaryl-CoA Reductase Inhibitors ,medicine.drug ,Signal Transduction - Abstract
Statins are prescribed to 25 million people worldwide for treating hypercholesterolemia and reducing the risk of cardiovascular diseases. However, the side effects of statins on immunity, and particularly on DC immunobiology, have not been analyzed in-depth. Here, we have investigated the impact of lovastatin treatment during monocyte differentiation into DCs on the responsiveness of the resulting monocyte-derived DCs (moDCs) to TLR-mediated activation. Lovastatin positively regulated TLR4 signaling in LPS-stimulated moDCs, leading to strong activation of p38 MAP-kinase paralleled by increased proinflammatory cytokine and IFN-β production. In contrast, lovastatin promoted negative regulation of IFN-β-mediated autocrine signaling through the IFN-αβ receptor, paralleled by low expression of the transcription factor IRF-1, leading to the inhibition of the enzymes iNOS and HO-1. Defective activation of iNOS/HO-1 resulted in limited cytoprotective capacity against ROS and reduced microbicidal potential. These data were validated using an in vivo model of Listeria monocytogenes infection, which revealed that iNOS activation by splenic inflammatory moDCs, specialized in NO and TNF-α production, was strongly reduced in lovastatin-treated, Listeria-infected mice. Statin treatment could have severe implications in immunity against pathogens due to defective iNOS/HO-1 metabolism activation in inflammatory moDCs that might lead to immune failure.
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- 2011
33. Differentiation and function of mouse monocyte-derived dendritic cells in steady state and inflammation
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Pilar M. Dominguez and Carlos Ardavín
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CD4-Positive T-Lymphocytes ,Immunology ,Nitric Oxide Synthase Type II ,Inflammation ,Biology ,Adaptive Immunity ,CD8-Positive T-Lymphocytes ,Communicable Diseases ,Monocytes ,Mice ,medicine ,Immunology and Allergy ,Macrophage ,Animals ,Antigens, Ly ,Antigen-presenting cell ,Innate immune system ,Tumor Necrosis Factor-alpha ,Monocyte ,Cell Differentiation ,Dendritic cell ,Dendritic Cells ,Acquired immune system ,Immunity, Innate ,medicine.anatomical_structure ,Monocyte differentiation ,medicine.symptom - Abstract
Although monocytes were originally described as precursors to all the different subpopulations of macrophages found in the steady state and formed under inflammatory and infectious conditions, recent data have demonstrated conclusively that monocytes can also differentiate into dendritic cells (DCs). Monocytes are the precursors to different subsets of DCs, such as Langerhans cells and DCs found in the lamina propria of the gastrointestinal, respiratory, and urogenital tracts. In addition, monocyte-derived DCs (moDCs), newly formed during inflammatory reactions, appear to fulfill an essential role in defense mechanisms against pathogens by participating in the induction of both adaptive and innate immune responses. In this regard, moDCs have the capacity to activate antigen-specific CD4(+) T-cell responses and to cross-prime CD8(+) T cells, during viral, bacterial, and parasitic infections. In addition, monocytes have been recently described as the precursors to a subset of DCs specialized in innate immunity against pathogens, named TipDCs [for TNF-alpha (tumor necrosis factor-alpha)-iNOS (inducible nitric oxide synthase)-producing DCs] that display a remarkable microbicidal activity and also provide iNOS-dependent help for antibody production by B cells. Importantly, in contrast to DCs developing in the steady state, moDCs formed during inflammatory and infectious processes are subjected to diverse soluble mediators that determine the multiple functional specificities displayed by moDCs, as a result of the remarkable developmental plasticity of monocytes. In this review, we discuss recent findings dealing with the differentiation and functional relevance of moDCs that have widened the frontiers of DC immunobiology in relation to innate and adaptive immunity and the etiology of chronic inflammatory diseases.
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- 2010
34. Abstract LB-235: IL10 autoregulatory loop in DLBCLs: New biomarker and a therapeutic target
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Wendy Béguelin, Nyasha Chambwe, Yanwen Jiang, Rita Shaknovich, Huimin Geng, Seema Sawh, Wayne Tam, and Pilar M. Dominguez
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Cancer Research ,Cell growth ,medicine.medical_treatment ,Germinal center ,Cell cycle ,Biology ,medicine.disease ,Interleukin 10 receptor, alpha subunit ,Interleukin 10 ,Cytokine ,Oncology ,hemic and lymphatic diseases ,Immunology ,medicine ,Cancer research ,Autocrine signalling ,Diffuse large B-cell lymphoma - Abstract
Diffuse Large B cell Lymphoma (DLBCL) is a common aggressive lymphoma that represents 30-40% of newly diagnosed cases of non-Hodgkin Lymphomas, but accounts for up to 80% of lymphoma-related mortality. It is biologically and clinically heterogeneous disease with variable response to conventional R-CHOP chemotherapy. R-CHOP remains the standard first line therapy after decades of investigation, but is associated with frequent lack of response. It has been reported that more clinically aggressive cases of DLBCLs have constitutive activation of NF-kB and STAT3 and have higher level of circulating IL10 cytokine in patient's peripheral. We further investigated the role of IL10 and its surface receptor in supporting the neoplastic phenotype of DLBCL. We measured and analyzed copy number changes using SNP array on a subset of 91 primary DLBCLs and identified broad regions of genomic amplification and deletion in this cohort using the GISTIC algorithm and determined that Il10RA is amplified in 17% and IL10RB in 8 % of primary DLBCLs. Gene expression for all 3 genes is markedly elevated, as determined using Affymetrix HG U133 plus 2.0 array data on 59 primary DLBCLs: up to 3 fold for IL10RA, and more than 10 fold for IL10RB and IL10 cytokine as compared to normal Germinal center B cells (NGCB)(all t-test, p We thus hypothesized that DLBCLs are dependent on the feed-forward autostimulatory loop that starts from autocrine IL10 stimulation through overexpressed receptor leading to cell proliferation and that bliocking the receptor will lead to cell death. We tested the effect of blocking the receptor using anti-IL10R Ab in a panel of 12 cell lines and 5 primary DLBCLs cultured ex-vivo. The Ab effect was dose-dependent and cell death ensued after 1-3 days of treatment. Within 3 days of treatment with 1 ug/ml most cell lines had reduced viability by more than 50%, and after treatment with 10 ug/ml all cell lines were more than 90% dead. On day 3 massive induction of apoptosis was detected in all DLBCLs using standard approaches: measuring Annexin V/ DAPI by flow cytometry and PARP-1 cleavage by western blot. We determined that blocking IL10R results in specific inhibition of signaling through JAK1/2 and loss of phosphorylation at STAT3Y705 immediately after treatment and inhibition of signaling through MAPK and phosphorylation of STAT3S727 at later treatment time points. The inhibition of signaling is sustained for days with only one drug treatment leading to induction of apoptosis. We observed downregulation of the known transcriptional targets of STAT3 that are crucial for maintaining cell cycle and proliferation like CCND1, CCND2, CMYC, JUNB. Anti-IL10R treatment resulted in significant downregulation of IL10 and IL10RA transcription, thus leading to interruption of IL10-IL10R autostimulatory loop. We thus propose that IL10R is a novel therapeutic target in DLBCLs that allows easy detection and targeting. Our findings warranty further animal studies and development of humanized antibody for clinical use in patients. Citation Format: Wendy Beguelin, Seema Sawh, Nyasha Chambwe, Huimin Geng, Yanwen Jiang, Pilar M. Dominguez, Wayne Tam, Rita Shaknovich. IL10 autoregulatory loop in DLBCLs: New biomarker and a therapeutic target. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr LB-235. doi:10.1158/1538-7445.AM2014-LB-235
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- 2014
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35. Evaluación del efecto de un programa de arteterapia aplicado a personas con enfermedad de Alzhéimer u otras demencias seniles
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Pilar M. Domínguez-Toscano, Juan R. Román-Benticuaga, and M. del Aire Montero-Domínguez
- Subjects
Arteterapia ,mayores ,alzhéimer ,demencia senil ,depresión ,Fine Arts ,Visual arts ,N1-9211 - Abstract
Se presenta un estudio experimental con grupo control, de metodología mixta (cuantitativa y cualitativa) que evalúa un programa de arteterapia para personas mayores con alzhéimer u otras demencias seniles. Tras 4 meses de intervención, más una segunda fase de 16 meses objeto de evaluación cognitiva de seguimiento, los resultados son: utilizando T de Student para dos muestras independientes, con un nivel de confianza del 0.95 (α=.05), 26 g.l., los tests sobre desarrollo cognitivo (MMSE) constatan una mejora comparativa en el grupo de intervención en la evaluación de seguimiento (-3.25), mejora no significativa tras la primera fase de intervención (-0.73). Del contraste de medidas post de depresión obtenidas con el BDI-II resulta un T=-3.47, valor significativo. Las medidas de estado funcional y calidad de vida, obtenidas mediante COOP/WONCA (9 escalas), arrojan como resultado: no se aprecian cambios significativos en dos escalas; mejora significativa pero moderada en 4 escalas; el grupo intervenido con arteterapia ha obtenido una mejora significativa y alta en Sentimientos (T=-3.22) y Actividades Sociales (-5.05). Se añade cálculo de T para muestras dependientes (experimental) en dos medidas (pre y post) o tres (pre, post y seguimiento en Estado Cognitivo). Se añade una visión de los contrastes de medidas en el grupo control, también utilizando el estadístico T para muestras dependientes. Para la evaluación cualitativa se utilizan la observación directa y entrevistas semiestructuradas. Respecto a la autoestima, fortalecimiento emocional, motivacional, actitudinal y relaciones interpersonales, los resultados muestran incrementos en las personas participantes en el programa. Palabras clave: arteterapia, mayores, alzhéimer, demencia senil, depresión.
- Published
- 2017
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