233 results on '"Pil Joo Kim"'
Search Results
2. Reducing ammonia volatilization in rice paddy: the importance of lower fertilizer rates and soil incorporation
- Author
-
Ronley C. Canatoy, Song Rae Cho, Snowie Jane C. Galgo, Pil Joo Kim, and Gil Won Kim
- Subjects
urea ,ammonia emission intensity ,ammonia emission factor ,fertilizer incorporation ,rice paddy ,Environmental sciences ,GE1-350 - Abstract
In rice paddies, which exhibit higher ammonia (NH₃) emission factors than upland soils, identifying key drivers of NH₃ flux intensity is crucial. Contrary to the commonly held view that NH₃ flux is primarily governed by soil ammonium (NH₄⁺) concentrations, we found no significant relationship between NH₃ flux and NH₄⁺ levels in the soil during rice cultivation. To pinpoint a primary factor influencing NH₃ flux intensity under conventional rice cropping practices, we conducted a 2-year field study applying four nitrogen (N) fertilization rates (0, 45, 90, and 180 kg N ha⁻¹) using urea [(NH₂)₂CO], the most common N fertilizer. NH₃ emissions were tracked using the ventilation method. Following N application, NH₃ flux sharply increased but rapidly returned to baseline. Half of the N applied as a basal fertilizer was incorporated within the soil, contributing only 10% of total NH₃ emissions. In contrast, top-dressed applications—20% of total N at the tillering stage and 30% at panicle initiation—accounted for approximately 90% of NH₃ loss. Seasonal NH₃ flux increased quadratically with rising N application rates, correlating strongly with NH₄⁺ concentrations in floodwater rather than soil. Grain yield responded quadratically to N levels, peaking at 120 kg N ha⁻¹ with a 37% increase over control yields. NH₃ flux intensity, defined as seasonal NH₃ flux per unit of grain yield, showed a quadratic response to N fertilization, decreasing with initial fertilizer additions (up to 38 kg N ha⁻¹) but then sharply increased with further N fertilization increase. Hence, reducing NH₄⁺ concentrations in floodwater through moderated N application and deeper fertilizer placement could be essential for minimizing NH₃ volatilization in rice systems.
- Published
- 2024
- Full Text
- View/download PDF
3. Biochar manure decreases ammonia volatilization loss and sustains crop productivity in rice paddy
- Author
-
Ronley C. Canatoy, Song Rae Cho, Snowie Jane C. Galgo, So Yeong Park, and Pil Joo Kim
- Subjects
ammonia emission intensity ,compost ,swine manure ,grain yield ,biochar ,Environmental sciences ,GE1-350 - Abstract
Manure application is a recommended method to improve soil quality and mitigate global warming via soil carbon (C) sequestration. However, such application can significantly increase ammonia (NH3) volatilization loss and cause secondary environmental problems, such as acidification, eutrophication, and particulate matter formation. To investigate the potential of reducing NH3 emissions in flooded rice paddies, three types of stabilized swine manure amendments (fresh, composted, and biochar) were applied at a rate of 12 Mg ha−1 (dry weight) under standard fertilization (N–P2O5–K2O = 90–45–57 kg ha−1), and NH3 emission was characterized using the static chamber method. Regardless of manure management practices, NH3 fluxes increased significantly immediately after application of an inorganic nitrogen (N) fertilizer (urea). The manure was applied completely as the basal fertilizer before rice transplanting, but the NH3 emission rates increased more dramatically following urea application in the manure treatments. Fresh and composted manure applications significantly increased seasonal NH3 volatilization losses compared to the control but the biochar did not. Compost manure significantly increased rice grain productivity owing to the higher N content, while fresh and biochar manures did not increase rice productivity because of fewer panicles per hill and fewer grains per panicle. Consequently, biochar application resulted in lower NH3 flux intensity and seasonal NH3 flux per grain yield, whereas fresh and compost manures substantially increased this intensity. Therefore, biochar manure may be a more reasonable organic amendment than fresh and composted manures for reducing NH3 emission impacts on rice paddies.
- Published
- 2024
- Full Text
- View/download PDF
4. Rice breeding for low methane and high yields
- Author
-
Suvendu Das and Pil Joo Kim
- Subjects
Botany ,QK1-989 - Published
- 2024
- Full Text
- View/download PDF
5. A potential of iron slag-based soil amendment as a suppressor of greenhouse gas (CH4 and N2O) emissions in rice paddy
- Author
-
Snowie Jane C. Galgo, Ronley C. Canatoy, Ji Yeon Lim, Hyon Chol Park, and Pil Joo Kim
- Subjects
silicate fertilizer ,methane ,nitrous oxide ,electron transfer ,iron ,Environmental sciences ,GE1-350 - Abstract
Iron slag-based silicate fertilizer (SF) has been utilized as a soil amendment in rice paddy fields for over 50 years. SF, which contains electron acceptors such as oxidized iron (Fe3+) compounds, is known to reduce methane (CH4) emissions, which have a global warming potential (GWP) of 23, higher than that of carbon dioxide (CO2). However, the dynamics of nitrous oxide (N2O), which has a GWP of 265, were questionable. Since the reduced Fe (Fe2+) can react as an electron donor, SF application might suppress N2O emissions by progressing N2O into nitrogen gas (N2) during the denitrification process. To verify the influence of SF application on two major greenhouse gas (GHG) dynamics during rice cultivation, three different kinds of SF were prepared by mixing iron rust (>99%, Fe2O3) as an electron acceptor with different ratios (0, 2.5, and 5%) and applied at the recommended level (1.5 Mg ha−1) for rice cultivation. SF application was effective in decreasing CH4 emissions in the earlier rice cropping season, and seasonal CH4 flux was more highly decreased with increasing the mixing ratio of iron rust from an average of 19% to 38%. Different from CH4 emissions, approximately 70% of seasonal N2O flux was released after drainage for rice harvesting. However, SF incorporation was very effective in decreasing N2O emissions by approximately 40% over the control. Reduced Fe2+ can be simultaneously oxidized into Fe3+ by releasing free electrons. The increased electron availability might develop more denitrification processes into N2 gas rather than NO and N2O and then decrease N2O emissions in the late rice cultivation season. We could find evidence of a more suppressed N2O flux by applying the electron acceptor-added SFs (SF2.5 and SF5.0) to a 49%–56% decrease over the control. The SF application was effective in increasing rice productivity, which showed a negative-quadratic response to the available silicate (SiO2) concentration in the soil at the harvesting stage. Grain yield was maximized at approximately 183 mg kg−1 of the available SiO2 concentration in the Korean rice paddy, with a 16% increase over no-SF application. Consequently, SF has an attractive potential as a soil amendment in rice paddy to decrease GHG emission impacts and increase rice productivity.
- Published
- 2024
- Full Text
- View/download PDF
6. Synergistic Release of Crop Nutrients and Stimulants from Hydroxyapatite Nanoparticles Functionalized with Humic Substances: Toward a Multifunctional Nanofertilizer
- Author
-
Ho Young Yoon, Jeong Gu Lee, Lorenzo Degli Esposti, Michele Iafisco, Pil Joo Kim, Seung Gu Shin, Jong-Rok Jeon, and Alessio Adamiano
- Subjects
Chemistry ,QD1-999 - Published
- 2020
- Full Text
- View/download PDF
7. A New Approach for Improving the Nutritional Quality of Soybean (Glycine max L.) with Iron Slag Coating
- Author
-
Song Yeob Kim, Ji Su Ha, Pil Joo Kim, Suvendu Das, Jessie Gutierreze-Suson, and Gil Won Kim
- Subjects
magnesium ,manganese ,iron seed coating ,n fixation ,Agriculture - Abstract
Iron slag, a byproduct of the steel manufacturing process with a high amount of iron (Fe), magnesium (Mg), manganese (Mn) and zinc (Zn), was used as a seed coating material to improve soybean nutrient quality and maintain yield during cultivation. Soybean yield (grain, aboveground, roots) did not differ significantly from the non-coated seeds, but nutrient concentration in soybeans, such as nitrogen, magnesium and manganese, were significantly increased in the iron-coated treatment, by 6%, 20% and 17%, respectively, than in the non-coated seeds. The application of iron slag as a protective seedcoat improved the nutrient concentrations of soybean seeds after harvest and maintained a good yield, implying that the material could be applied worldwide to improve the nutritional quality of soybeans in large scale production.
- Published
- 2022
- Full Text
- View/download PDF
8. Taxonomic and functional responses of soil microbial communities to slag-based fertilizer amendment in rice cropping systems
- Author
-
Suvendu Das, Hyo Suk Gwon, Muhammad Israr Khan, Joy D. Van Nostrand, Muhammad Ashraful Alam, and Pil Joo Kim
- Subjects
Environmental sciences ,GE1-350 - Abstract
The effective utilization of slag-based Silicon fertilizer (silicate fertilizer) in agriculture to improve crop productivity and to mitigate environmental consequences turns it into a high value added product in sustainable agriculture. Despite the integral role of soil microbiome in agricultural production and virtually all ecosystem processes, our understanding of the microbial role in ecosystem functions and agricultural productivity in response to the silicate fertilizer amendment is, however, elusive. In this study, using 16S rRNA gene and ITS amplicon illumina sequencing and a functional gene microarray, i.e., GeoChip 5, we report for the first time the responses of soil microbes and their functions to the silicate fertilizer amendment in two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice). The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity, but decreased N availability and CH4 and N2O emissions. Moreover, the silicate fertilizer application significantly altered soil bacterial and fungal community composition and increased abundance of functional genes involved in labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxification, whereas those involve in CH4 production and denitrification were decreased. The changes in the taxonomic and functional structure of microbial communities by the silicate fertilizer were mostly regulated by soil pH, plant photosynthesis, and nutrient availability. This study provides novel insights into our understanding of microbial functional processes in response to the silicate fertilizer amendment in rice cropping systems and has important implications for sustainable rice production. Keywords: Microbial responses/feedbacks, Silicate fertilization, GeoChip, Functional genes, Illumina sequencing
- Published
- 2019
- Full Text
- View/download PDF
9. Uncertainty of methane emissions coming from the physical volume of plant biomass inside the closed chamber was negligible during cropping period.
- Author
-
Ji Yeon Lim, Song Rae Cho, Gil Won Kim, Pil Joo Kim, and Seung Tak Jeong
- Subjects
Medicine ,Science - Abstract
In rice paddy, the closed chamber method is broadly used to estimate methane (CH4) emission rate. Since rice plants can significantly affect CH4 production, oxidation and emission, rice plantation inside the chamber is standardized in IPCC guidelines. Methane emission rate is calculated using the increased concentration inside the headspace. Biomass growth might decrease the headspace volume, and thus CH4 emission rates might be overestimated. To evaluate the influence of chamber headspace decreased by rice plant development on CH4 emission rates, five Korean rice cultivars were cultivated in a typical rice paddy, and physical volume changes in rice biomass were assayed using water displacement method. The recommended acrylic closed chambers (H. 1.2 m x W. 0.6 m x L. 0.6 m) were installed, and eight rice plants were transplanted inside the chamber with the same space interval with the outside. Biomass growth significantly decreased the headspace volume of the chamber. However, this volume covered only 0.48-0.55% of the closed chamber volume at the maximum growth stage. During the whole cropping period, mean 0.24-0.28% of chamber headspace was allocated by plant biomass, and thus this level of total CH4 emissions was overestimated. However, this overestimation was much smaller than the errors coming from other investigation processes (i.e., chamber closing hour, temperature recording, inconstant flooding level, different soil environments, etc.) and rice physiological changes. In conclusion, the influence of physical biomass volume inside the closed chamber was negligible to make the error in total CH4 emission assessment in rice paddies.
- Published
- 2021
- Full Text
- View/download PDF
10. Silicate Fertilizer Amendment Alters Fungal Communities and Accelerates Soil Organic Matter Decomposition
- Author
-
Suvendu Das, Jeong Gu Lee, Song Rae Cho, Hyeon Ji Song, and Pil Joo Kim
- Subjects
slag silicate fertilization ,fungal communities ,soil enzyme activities ,illumina sequencing ,rice paddy ,Microbiology ,QR1-502 - Abstract
Soil microorganisms play a crucial role in organic matter decomposition and nutrient cycling in cropping systems. Compared to bacteria, fungal community composition and the role of fungi in organic matter decomposition and nutrient cycling in agro-systems are, however, elusive. Silicon (Si) fertilization is essential to improve agronomic performance of rice. The effects of the Si fertilizer application on the soil fungal community composition and their contribution in soil organic matter (SOM) decomposition are not yet studied. We investigated the short-term (120 days) slag silicate fertilizer (SSF) amendment impacts on plant photosynthesis and soil biochemical changes, soil fungal communities (assessed by ITS amplicon illumina sequencing), hydrolytic and oxidase enzyme activities, CO2 emissions, and bacterial and fungal respiration in diverse eco-geographic races of rice (Oryza sativa L.), i.e., Japonica rice (O. sativa japonica) and Indica rice (O. sativa indica). The short-term SSF amendment significantly increased the relative abundance of saprotrophic fungi and accelerated organic matter decomposition. The increase in saprotrophic fungi was mostly attributed to greater labile C availability and Si availability. Higher organic matter decomposition was accompanied by an increase in both hydrolytic and oxidative enzyme activities in response to the SSF amendment. The stimulation of oxidative enzyme activities was explained by an increase in root oxidase activities and iron redox cycling, whereas stimulation of hydrolytic enzyme activities was explained by the greater labile C availability under SSF fertilization. We conclude that the short-term SSF amendment increases saprotrophic fungal communities and soil hydrolytic and oxidative enzyme activities, which in turn stimulates SOM mineralization and thus could have negative feedback impacts on soil C storage in submerged rice paddies.
- Published
- 2019
- Full Text
- View/download PDF
11. Editorial: Role of Microbes in Climate Smart Agriculture
- Author
-
Suvendu Das, Adrian Ho, and Pil Joo Kim
- Subjects
sustainable agriculture ,greenhouse gas emissions and mitigation ,C transformation and stability ,extreme weather events ,elevated CO2 and O3 ,Microbiology ,QR1-502 - Published
- 2019
- Full Text
- View/download PDF
12. Cropping With Slag to Address Soil, Environment, and Food Security
- Author
-
Suvendu Das, Gil Won Kim, Hyun Young Hwang, Pankaj Prakash Verma, and Pil Joo Kim
- Subjects
microbial dynamics ,silicate fertilization ,slag ,greenhouse gas emissions ,carbon sequestration ,Microbiology ,QR1-502 - Abstract
The effective utilization of slag fertilizer in agriculture to neutralize soil acidity, improve crop productivity, mitigate greenhouse gas emissions, and stabilize heavy metals in contaminated soils turns it into a high value added product in sustainable agriculture. These effects could be due to the shift in microbial metabolism and/or modification of microbial habitats. At the system level, soil microorganisms play an integral role in virtually all ecosystem processes. There is a growing interest to reveal the underlying mechanisms of slag-microbe interactions and the contribution of soil biota to ecosystem functioning. In this perspective, we discuss the possible driving mechanisms of slag-microbe interactions in soil and how these slag-microbe interactions can affect crop yield, greenhouse gas emissions, soil carbon sequestration, and heavy metal stabilization in contaminated soils. In addition, we discuss the problems and environmental concerns in using slag in agriculture. Emphasis has been given for further research to validate the proposed mechanisms associated with slag-microbe interactions for increasing soil quality, crop productivity, and mitigating environmental consequences. While evaluating the slag amendment, effects on agriculture and environment, the potential risks, socio-economics, techno-economics, and ethics should be assessed.
- Published
- 2019
- Full Text
- View/download PDF
13. Effect of Rice Planting on Nitrous Oxide (N2O) Emission under Different Levels of Nitrogen Fertilization
- Author
-
Gil Won Kim, Pil Joo Kim, Muhammad Israr Khan, and Sung-Jae Lee
- Subjects
static chamber method ,nitrogen fertilization ,N2O emission ,rice paddy ,Agriculture - Abstract
Nitrogen (N) fertilization is one of the most effective practices to increase productivity, and has therefore had a fast global increase. Consequently, the effects of the application of N fertilizer on emissions of N2O have been widely studied, but the effect of rice planting on N2O emission was not adequately quantified. To evaluate the effect of rice cultivation on N2O emissions, different levels of N were applied in a typical temperate rice field, and the N2O fluxes were compared in rice-planted and non-planted soils. Seasonal N2O fluxes responded differently with respect to N fertilization in the two different soil conditions. In non-planted soils, seasonal N2O fluxes ranged within 0.31–0.34 kg N2O ha−1 under 0 kg N ha−1 fertilization, and significantly increased by increasing N fertilization rates, with an average rate of 0.0024 kg N2O kg−1 N for 3 years. In rice-planted soils, seasonal N2O fluxes were also increased by N fertilization but showed large negative N2O fluxes, irrespective of the N fertilization level. This study confirms that the rice reacted as a reducer of N2O emissions, not an emission source, in paddy fields, suggesting that N2O fluxes should be estimated by the static chamber planted with rice to obtain a more precise field environment. The differences of N2O fluxes between the rice-planted and non-planted soils might have been caused by the rice plant’s rhizospheric activities, which may have influenced the N2O consumption potential in the rice plants’ rhizosphere. The N2O consumption potential was significantly increased with increasing N fertilization rates and was highly correlated with rice biomass yields. Therefore, the decrease in N2O fluxes by N fertilization in rice-planted soils might have been caused by a decreasing denitrification potential in paddy soils.
- Published
- 2021
- Full Text
- View/download PDF
14. Composted Cattle Manure Increases Microbial Activity and Soil Fertility More Than Composted Swine Manure in a Submerged Rice Paddy
- Author
-
Suvendu Das, Seung Tak Jeong, Subhasis Das, and Pil Joo Kim
- Subjects
livestock waste compost ,soil enzyme ,bacterial community ,MiSeq ,APIZYM ,Microbiology ,QR1-502 - Abstract
Livestock waste composts with minimum inorganic fertilizer as a soil amendment in low-input intensive farming are a feasible agricultural practice to improve soil fertility and productivity and to mitigate soil degradation. The key benefits of the practice rely on the activities of soil microorganisms. However, the role of different livestock composts [composted cattle manure (CCM) vs. composted swine manure (CSM)] on soil microbes, their activities and the overall impact on soil fertility and productivity in a flooded paddy remains elusive. This study compares the effectiveness of CCM and CSM amendment on bacterial communities, activities, nutrient availability, and crop yield in a flooded rice cropping system. We used deep 16S amplicon sequencing and soil enzyme activities to decipher bacterial communities and activities, respectively. Both CCM and CSM amendment significantly increased soil pH, nutrient availability (C, N, and P), microbial biomass, soil enzyme activities indicative for C and N cycles, aboveground plant biomass and grain yield. And the increase in above-mentioned parameters was more prominent in the CCM treatment compared to the CSM treatment. The CCM amendment increased species richness and stimulated copiotrophic microbial groups (Alphaproteobacteria, Betaproteobacteria, and Firmicutes) which are often involved in degradation of complex organic compounds. Moreover, some dominant species (e.g., Azospirillum zeae, Azospirillum halopraeferens, Azospirillum rugosum, Clostridium alkalicellulosi, Clostridium caenicola, Clostridium termitidis, Clostridium cellulolyticum, Magnetospirillum magnetotacticum, Pleomorphomonas oryzae, Variovorax boronicumulans, Pseudomonas xanthomarina, Pseudomonas stutzeri, and Bacillus niacini) which have key roles in plant growth promotion and/or lignocellulose degradation were enhanced under CCM treatment compared to CSM treatment. Multivariate analysis revealed that soil pH and available carbon (C) and nitrogen (N) were the major, while total organic carbon (TOC), total nitrogen (TN), and available phosphorus (P) were the minor drivers of variation in bacterial communities. Overall, our observations suggest that CCM amendment is better than CSM amendment to improve soil fertility and crop yield in a submerged rice cropping system.
- Published
- 2017
- Full Text
- View/download PDF
15. Effective Suppression of Methane Emission by 2-Bromoethanesulfonate during Rice Cultivation.
- Author
-
Tatoba R Waghmode, Md Mozammel Haque, Sang Yoon Kim, and Pil Joo Kim
- Subjects
Medicine ,Science - Abstract
2-bromoethanesulfonate (BES) is a structural analogue of coenzyme M (Co-M) and potent inhibitor of methanogenesis. Several studies confirmed, BES can inhibit CH4 prodcution in rice soil, but the suppressing effectiveness of BES application on CH4 emission under rice cultivation has not been studied. In this pot experiment, different levels of BES (0, 20, 40 and 80 mg kg-1) were applied to study its effect on CH4 emission and plant growth during rice cultivation. Application of BES effectively suppressed CH4 emission when compared with control soil during rice cultivation. The CH4 emission rates were significantly (P
- Published
- 2015
- Full Text
- View/download PDF
16. Cattle Manure Enhances Methanogens Diversity and Methane Emissions Compared to Swine Manure under Rice Paddy.
- Author
-
Sang Yoon Kim, Prabhat Pramanik, Paul L E Bodelier, and Pil Joo Kim
- Subjects
Medicine ,Science - Abstract
Livestock manures are broadly used in agriculture to improve soil quality. However, manure application can increase the availability of organic carbon, thereby facilitating methane (CH4) production. Cattle and swine manures are expected to have different CH4 emission characteristics in rice paddy soil due to the inherent differences in composition as a result of contrasting diets and digestive physiology between the two livestock types. To compare the effect of ruminant and non-ruminant animal manure applications on CH4 emissions and methanogenic archaeal diversity during rice cultivation (June to September, 2009), fresh cattle and swine manures were applied into experimental pots at 0, 20 and 40 Mg fresh weight (FW) ha-1 in a greenhouse. Applications of manures significantly enhanced total CH4 emissions as compared to chemical fertilization, with cattle manure leading to higher emissions than swine manure. Total organic C contents in cattle (466 g kg-1) and swine (460 g kg-1) manures were of comparable results. Soil organic C (SOC) contents were also similar between the two manure treatments, but dissolved organic C (DOC) was significantly higher in cattle than swine manure. The mcrA gene copy numbers were significantly higher in cattle than swine manure. Diverse groups of methanogens which belong to Methanomicrobiaceae were detected only in cattle-manured but not in swine-manured soil. Methanogens were transferred from cattle manure to rice paddy soils through fresh excrement. In conclusion, cattle manure application can significantly increase CH4 emissions in rice paddy soil during cultivation, and its pretreatment to suppress methanogenic activity without decreasing rice productivity should be considered.
- Published
- 2014
- Full Text
- View/download PDF
17. Biochar manure decreases ammonia volatilization loss and sustains crop productivity in rice paddy.
- Author
-
Canatoy, Ronley C., Song Rae Cho, Galgo, Snowie Jane C., So Yeong Park, and Pil Joo Kim
- Subjects
SWINE manure ,PADDY fields ,BIOCHAR ,PARTICULATE matter ,GRAIN yields ,UREA as fertilizer ,MANURES - Abstract
Manure application is a recommended method to improve soil quality and mitigate global warming via soil carbon (C) sequestration. However, such application can significantly increase ammonia (NH3) volatilization loss and cause secondary environmental problems, such as acidification, eutrophication, and particulate matter formation. To investigate the potential of reducing NH3 emissions in flooded rice paddies, three types of stabilized swine manure amendments (fresh, composted, and biochar) were applied at a rate of 12 Mg ha-1 (dry weight) under standard fertilization (N-P2O5-K2O = 90-45-57 kg ha-1), and NH3 emission was characterized using the static chamber method. Regardless of manure management practices, NH3 fluxes increased significantly immediately after application of an inorganic nitrogen (N) fertilizer (urea). The manure was applied completely as the basal fertilizer before rice transplanting, but the NH3 emission rates increased more dramatically following urea application in the manure treatments. Fresh and composted manure applications significantly increased seasonal NH3 volatilization losses compared to the control but the biochar did not. Compost manure significantly increased rice grain productivity owing to the higher N content, while fresh and biochar manures did not increase rice productivity because of fewer panicles per hill and fewer grains per panicle. Consequently, biochar application resulted in lower NH3 flux intensity and seasonal NH3 flux per grain yield, whereas fresh and compost manures substantially increased this intensity. Therefore, biochar manure may be a more reasonable organic amendment than fresh and composted manures for reducing NH3 emission impacts on rice paddies. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
18. Sources and intensity of CH4 production in paddy soils depend on iron oxides and microbial biomass
- Author
-
Yuhong Li, Zhenke Zhu, Xiaomeng Wei, Yakov Kuzyakov, Baozhen Li, Pil Joo Kim, Jinshui Wu, Shoulong Liu, and Tida Ge
- Subjects
Soil Science ,Agronomy and Crop Science ,Microbiology - Published
- 2022
- Full Text
- View/download PDF
19. Loss-of-function gs3 allele decreases methane emission and increases grain yield in rice
- Author
-
Yongho Kwon, Ji-Yoon Lee, Jisu Choi, So-Myeong Lee, Dajeong Kim, Pil Joo Kim, Ho Gyeong Chae, Jin-Kyung Cha, Hyeonjin Park, Ju-Won Kang, Tae Hee Kim, NKULU ROLLY KABANGE, Ki-Won Oh, Youn-Sig Kwak, Jong-Hee Lee, and Choong-Min Ryu
- Abstract
Rice paddies are a major source of methane emission. To meet the food demand of the growing population and to cope with global warming, reducing greenhouse gases and enhancing yield are critical. Here, we demonstrate for the first time that a novel loss-of-function rice allele, gs3, mitigates methane emission from methanogens by allocating more photosynthates to the grain and less to the root, and increases yield by enlarging grain size and weight.
- Published
- 2023
- Full Text
- View/download PDF
20. Effect of Biochar Manure on Reducing Ammonia (Nh3) Volatilization Loss in Rice Paddy
- Author
-
Ronley Canatoy, Song Rae Cho, Snowie Jane Galgo, Jisoo Ha, Pil Joo Kim, and Jeong Gu Lee
- Published
- 2023
- Full Text
- View/download PDF
21. Aerobic Methanotrophy and Co-occurrence Networks of a Tropical Rainforest and Oil Palm Plantations in Malaysia
- Author
-
Pil Joo Kim, Lucas William Mendes, Marcus A. Horn, Hyo Jung Lee, Hester van Dijk, Adrian Ho, Zufarzaana Zulkeflee, and Ali Tan Kee Zuan
- Subjects
Dewey Decimal Classification::500 | Naturwissenschaften::570 | Biowissenschaften, Biologie ,Ecology ,business.industry ,Soil Science ,Agriculture ,Biology ,Methanotrophs ,Microbial population biology ,Microbial ecology ,ddc:570 ,Greenhouse gas ,Oil palm ,Soil water ,Anaerobic oxidation of methane ,Respectively ,Tropical soil ,business ,Methane ,Relative species abundance ,pmoA ,Ecology, Evolution, Behavior and Systematics ,Tropical rainforest - Abstract
Abstract Oil palm (OP) plantations are gradually replacing tropical rainforest in Malaysia, one of the largest palm oil producers globally. Conversion of lands to OP plantations has been associated with compositional shifts of the microbial community, with consequences on the greenhouse gas (GHG) emissions. While the impact of the change in land use has recently been investigated for microorganisms involved in N2O emission, the response of the aerobic methanotrophs to OP agriculture remains to be determined. Here, we monitored the bacterial community composition, focusing on the aerobic methanotrophs, in OP agricultural soils since 2012, 2006, and 1993, as well as in a tropical rainforest, in 2019 and 2020. High-affinity methane uptake was confirmed, showing significantly lower rates in the OP plantations than in the tropical rainforest, but values increased with continuous OP agriculture. The bacterial, including the methanotrophic community composition, was modified with ongoing OP agriculture. The methanotrophic community composition was predominantly composed of unclassified methanotrophs, with the canonical (Methylocystis) and putative methanotrophs thought to catalyze high-affinity methane oxidation present at higher relative abundance in the oldest OP plantation. Results suggest that the methanotrophic community was relatively more stable within each site, exhibiting less temporal variations than the total bacterial community. Uncharacteristically, a 16S rRNA gene-based co-occurrence network analysis revealed a more complex and connected community in the OP agricultural soil, which may influence the resilience of the bacterial community to disturbances. Overall, we provide a first insight into the ecology and role of the aerobic methanotrophs as a methane sink in OP agricultural soils.
- Published
- 2021
- Full Text
- View/download PDF
22. Cover crops offset recalcitrant soil organic carbon losses under plastic-film mulching by altering microbial functional genes
- Author
-
Jeong Gu Lee, Ho Gyeong Chae, Suvendu Das, Gil Won Kim, and Pil Joo Kim
- Subjects
Soil Science ,Agronomy and Crop Science ,Microbiology - Published
- 2022
- Full Text
- View/download PDF
23. Subsurface fertilization boosts crop yields and lowers greenhouse gas emissions: A global meta-analysis
- Author
-
Mohammad Saiful Islam Bhuiyan, Azizur Rahman, Irakli Loladze, Suvendu Das, and Pil Joo Kim
- Subjects
Environmental Engineering ,Environmental Chemistry ,Pollution ,Waste Management and Disposal - Published
- 2023
- Full Text
- View/download PDF
24. Importance of biochar as a key amendment to convert rice paddy into carbon negative
- Author
-
Ronley C. Canatoy, Seung Tak Jeong, Song Rae Cho, Snowie Jane C. Galgo, and Pil Joo Kim
- Subjects
Environmental Engineering ,Environmental Chemistry ,Pollution ,Waste Management and Disposal - Published
- 2023
- Full Text
- View/download PDF
25. Recycling of ferrous slag in agriculture: Potentials and challenges
- Author
-
Jeong Gu Lee, Pil Joo Kim, Suvendu Das, Hyun Young Hwang, Muhammad Ashraful Alam, Chang Hoon Lee, and Snowie Jane C. Galgo
- Subjects
Environmental Engineering ,Waste management ,business.industry ,0208 environmental biotechnology ,Slag ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,02 engineering and technology ,010501 environmental sciences ,01 natural sciences ,Pollution ,Industrial waste ,020801 environmental engineering ,Ferrous ,Economic sustainability ,Agriculture ,visual_art ,Steel mill ,visual_art.visual_art_medium ,Environmental science ,business ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Water Science and Technology - Abstract
A large volume of slag is generated as a by-product during steel manufacturing. In order to ensure environmental and economic sustainability, it is imperative to find innovative solutions for the e...
- Published
- 2020
- Full Text
- View/download PDF
26. The Effects of Ethephon Application on Suppressing Methane Emission and Stimulating Rice Productivity in a Rice Paddy Soil: A Pot Experiment
- Author
-
Juhee Lee, Yo-Sup Rim, Sang Yoon Kim, Pil Joo Kim, Ju-Sik Cho, Yeomyeong Lee, Yong Hwa Cheong, and Seongwoo Choi
- Subjects
chemistry.chemical_compound ,chemistry ,Agronomy ,Greenhouse gas ,Environmental science ,Paddy field ,Nitrous oxide ,Productivity ,Methane ,Ethephon - Published
- 2020
- Full Text
- View/download PDF
27. Steel slag amendment impacts on soil microbial communities and activities of rice (Oryza sativa L.)
- Author
-
Pil Joo Kim, Suvendu Das, Hyo Suk Gwon, Muhammad Israr Khan, and Seung Tak Jeong
- Subjects
0301 basic medicine ,Deltaproteobacteria ,lcsh:Medicine ,Plant Roots ,Soil ,Nutrient ,Soil pH ,RNA, Ribosomal, 16S ,Photosynthesis ,lcsh:Science ,Soil Microbiology ,Multidisciplinary ,Slag ,Betaproteobacteria ,food and beverages ,Phosphorus ,04 agricultural and veterinary sciences ,Hydrogen-Ion Concentration ,Nitrogen Cycle ,Actinobacteria ,visual_art ,Metallurgy ,visual_art.visual_art_medium ,Fertilizer ,Gammaproteobacteria ,Silicon ,Iron ,Microbial Consortia ,Amendment ,Firmicutes ,engineering.material ,complex mixtures ,Article ,Carbon Cycle ,03 medical and health sciences ,Element cycles ,Humans ,Fertilizers ,Alphaproteobacteria ,Waste Products ,Oryza sativa ,Crop yield ,fungi ,lcsh:R ,Oryza ,Soil quality ,030104 developmental biology ,Agronomy ,Steel ,040103 agronomy & agriculture ,engineering ,0401 agriculture, forestry, and fisheries ,Environmental science ,lcsh:Q - Abstract
With the increase in iron/steel production, the higher volume of by-products (slag) generated necessitates its efficient recycling. Because the Linz-Donawitz (LD) slag is rich in silicon (Si) and other fertilizer components, we aim to evaluate the impact of the LD slag amendment on soil quality (by measuring soil physicochemical and biological properties), plant nutrient uptake, and strengthens correlations between nutrient uptake and soil bacterial communities. We used 16 S rRNA illumine sequencing to study soil bacterial community and APIZYM assay to study soil enzymes involved in C, N, and P cycling. The LD slag was applied at 2 Mg ha−1 to Japonica and Indica rice cultivated under flooded conditions. The LD slag amendment significantly improved soil pH, plant photosynthesis, soil nutrient availability, and the crop yield, irrespective of cultivars. It significantly increased N, P, and Si uptake of rice straw. The slag amendment enhanced soil microbial biomass, soil enzyme activities and enriched certain bacterial taxa featuring copiotrophic lifestyles and having the potential role for ecosystem services provided to the benefit of the plant. The study evidenced that the short-term LD slag amendment in rice cropping systems is useful to improve soil physicochemical and biological status, and the crop yield.
- Published
- 2020
- Full Text
- View/download PDF
28. Synergistic Release of Crop Nutrients and Stimulants from Hydroxyapatite Nanoparticles Functionalized with Humic Substances: Toward a Multifunctional Nanofertilizer
- Author
-
Jeong Gu Lee, Pil Joo Kim, Ho Young Yoon, Seung Gu Shin, Lorenzo Degli Esposti, Jong-Rok Jeon, Alessio Adamiano, and Michele Iafisco
- Subjects
Biocompatibility ,General Chemical Engineering ,Salt (chemistry) ,Nanoparticle ,Crops ,02 engineering and technology ,010501 environmental sciences ,complex mixtures ,01 natural sciences ,Article ,Hydroxyapatite ,Nanomaterials ,chemistry.chemical_compound ,Adsorption ,QD1-999 ,Dissolution ,0105 earth and related environmental sciences ,2. Zero hunger ,chemistry.chemical_classification ,Rhizosphere ,food and beverages ,General Chemistry ,Plants ,021001 nanoscience & nanotechnology ,Phosphate ,Chemistry ,chemistry ,Chemical engineering ,Soils ,Nanoparticles ,0210 nano-technology - Abstract
The use of salt- or macro-sized NPK fertilizers is typically associated with low nutrient use efficiency and water eutrophication. Nanotechnology can overcome such drawbacks, but its practical application on a large scale is limited by (i) high costs and difficult scale-up of nanoparticle synthesis, (ii) questionable advantages over traditional methods, and (iii) health hazards related to nanomaterial introduction in the food stream and the environment. Here, we report on a novel biocompatible and multifunctional P nanofertilizer obtained by self-assembling natural or synthetic humic substances and hydroxyapatite nanoparticles using a simple and straightforward dipping process, exploiting the interaction between the polyphenolic groups of humic substances and the surface of nanohydroxyapatite. Pot tests using the as-prepared materials were performed on Zea mays as a model crop, and the results were compared to those obtained using commercial fused superphosphate and bare nanohydroxyapatites. A significant improvement, in terms of early plant growth, corn productivity, rhizosphere bacteria, and the resistance to NaCl-induced abiotic stresses, was achieved using hydroxyapatite nanoparticles assembled with humic substances. These effects were ascribed to the synergistic co-release of phosphate ions and humic substances, which are two types of plant-beneficial agents for crop nutrition and stimulation, respectively. The release patterns were proven to be tunable with the amount of humic substances adsorbed on the nanoparticles, inducing competition between humic-substance-driven phosphorous dissolution and block of water contact. Such positive effects on plant growth in association with its intrinsic biocompatibility, simple synthesis, and multifunctionality qualify this novel nanofertilizer as a promising material for large-scale use in the agronomic field.
- Published
- 2020
- Full Text
- View/download PDF
29. Improving Methane Mitigating Functionality of Blast Furnace Slag by Adding Electron Acceptor
- Author
-
Snowie Jane C. Galgo, Ji Yeon Lim, Ronley C. Canatoy, Ji Su Ha, Keon Mok Sohn, and Pil Joo Kim
- Subjects
Soil ,Environmental Engineering ,Iron ,Silicates ,Nitrous Oxide ,Environmental Chemistry ,Agriculture ,Electrons ,Oryza ,Fertilizers ,Pollution ,Waste Management and Disposal ,Methane - Abstract
Blast furnace slag (BFS), a byproduct of iron-producing process, has been applied as silicate fertilizer in rice paddy. Silicate fertilizer contains lime and silicate as main components and iron and manganese as electron acceptors. This amendment improves soil productivity and mitigates methane (CH
- Published
- 2022
- Full Text
- View/download PDF
30. Mechanism of slag-based silicate fertilizer suppressing methane emissions from paddies
- Author
-
Suvendu Das, Satya Narayan Jena, Mohammad Saiful Islam Bhuiyan, Gil Won Kim, and Pil Joo Kim
- Subjects
Renewable Energy, Sustainability and the Environment ,Strategy and Management ,Building and Construction ,Industrial and Manufacturing Engineering ,General Environmental Science - Published
- 2022
- Full Text
- View/download PDF
31. A new approach to suppress methane emissions from rice cropping systems using ethephon
- Author
-
Suvendu Das, Pil Joo Kim, Pankaj Prakash Verma, Ji Yeon Lim, Song Rae Cho, and Gil Won Kim
- Subjects
education.field_of_study ,Irrigation ,Environmental Engineering ,Methanogenesis ,Crop yield ,Population ,Amendment ,Nitrous Oxide ,Agriculture ,Oryza ,Pollution ,Tillage ,chemistry.chemical_compound ,Soil ,Organophosphorus Compounds ,chemistry ,Agronomy ,Environmental Chemistry ,Paddy field ,Environmental science ,Prospective Studies ,education ,Waste Management and Disposal ,Methane ,Ethephon - Abstract
Rice is the main staple food for more than half of the world's population. Yet, rice cultivation is subjected to criticism because of its important role in methane (CH4) emissions. Although several agronomic practices such as controlled irrigation and conservation tillage have been widely adopted to mitigate CH4 emissions from rice cultivation, the benefits gained by these practices are highly dependent on site-specific soil and climate conditions, and often offset by yield reduction. The use of plant growth regulating compounds having the potential to increase the crop yield and mitigate CH4 emissions may be an innovative approach to sustainable agriculture. Ethylene (C2H4), a plant growth regulator is known to have a strong inhibitory effect on methanogenesis. However, due to gaseous form and low water solubility, C2H4 has not been used to suppress methanogenesis in paddy fields. To develop C2H4 as a prospective soil amendment for reducing methane (CH4) emissions, ethephon (2-Chloroethylphosphonic acid), a precursor of C2H4 was tested. We found that ethephon reduced CH4 formation by 43%, similar to other well known methanogenic inhibitors (2-Bromoethanesulfonate, 2-Chlomoethanesulfonate, 2-Mercaptoethanesulfonate). However, ethephon rapidly hydrolyzed to C2H4 and methanogenic activity recuperated completely after C2H4 removal. To slow down the release of C2H4, ethephon was mixed with bio-degradable polymers such as cellulose acetate and applied to paddy soils. We found that compared with the control, the C2H4 release of ethephon slowed down to 90 days, and the CH4 emissions were reduced by 90%. The application of ethephon at lower concentrations did not significantly alter bacterial communities, their relative abundance, and the abundance of methanotrophs, but it significantly reduced archaeal communities and the relative abundance and expression level of methanogens in paddy soils. Results suggest that cellulose acetate-mixed ethephon has great promise to suppress CH4 emissions in rice paddies while ensuring sustainable yields.
- Published
- 2021
32. Green manure application accelerates soil organic carbon stock loss under plastic film mulching
- Author
-
Jennifer Cuello, Pil Joo Kim, Jeong Gu Lee, Sang Yoon Kim, and Hyun Young Hwang
- Subjects
Crop residue ,Chemistry ,Plastic film ,Soil Science ,04 agricultural and veterinary sciences ,Soil carbon ,010501 environmental sciences ,engineering.material ,01 natural sciences ,Green manure ,Animal science ,040103 agronomy & agriculture ,engineering ,0401 agriculture, forestry, and fisheries ,Fertilizer ,Agronomy and Crop Science ,Water content ,Stover ,Mulch ,0105 earth and related environmental sciences - Abstract
This study investigated the offset effect between green manure (GM) application and plastic film mulching (PFM) on soil organic carbon (SOC) stock change during maize cultivation. Within PFM and no-mulching treatments, three different fertilization sub-treatments were applied: (a) chemical fertilizer, (b) barley and (c) hairy vetch. The SOC balance were evaluated by analyzing the net ecosystem carbon budget (NECB). The results showed that the NECB value was negative during maize cultivation regardless of mulching or fertilization condition, indicated SOC loss. The PFM increased maize yield (P
- Published
- 2019
- Full Text
- View/download PDF
33. Annual net carbon budget in rice soil
- Author
-
Hyun Young Hwang, M. M. Haque, Jatish Chandra Biswas, and Pil-Joo Kim
- Subjects
Crop residue ,business.industry ,food and beverages ,Soil Science ,Biomass ,Growing season ,04 agricultural and veterinary sciences ,010501 environmental sciences ,01 natural sciences ,Agronomy ,Agriculture ,040103 agronomy & agriculture ,0401 agriculture, forestry, and fisheries ,Environmental science ,Paddy field ,Ecosystem ,Cropping system ,Cover crop ,business ,Agronomy and Crop Science ,0105 earth and related environmental sciences - Abstract
Crop residue or biomass is generally removed from the field as animal feed and fuel in many Asian countries. The impact of this practice on sustaining soil annual net carbon balance (ANCB) has not received much attention for cover crop-rice cropping systems in paddy soil. The influence of cover crop cultivation and biomass incorporation rates on ANCB needs to be evaluated in a rice-based cropping system. Above-ground biomass was harvested and incorporated at 3.0, 6.0 and 12.0 Mg ha−1 (dry weight) 1 week before rice transplanting and carbon (C) inputs and losses were compared with a control treatment i.e. 0 Mg biomass ha−1. The annual net C inputs and outputs significantly increased with the increased biomass incorporation rates. Applied organic C was lost mainly as CO2-C during cover crop cultivation, and as CH4-C and CO2-C during the rice growing season. About 81–90% of total organic C output was lost as CO2-C and 10–19% as CH4-C during the rice growing season. The net ecosystem C balance was negative (− 1402 to − 1523 kg C ha−1) with cover crop cultivation, but it was mostly positive (1071–2652 kg C ha−1) in the rice growing season depending on biomass incorporation rates. About 5.2 Mg ha−1 (43% of total harvest) cover crop biomass needs to be recycled for sustaining soil organic C stocks in paddy field.
- Published
- 2019
- Full Text
- View/download PDF
34. Unexpected higher decomposition of soil organic matter during cold fallow season in temperate rice paddy
- Author
-
Pil Joo Kim, Yong Bok Lee, Muhammad Israr Khan, Hyun Young Hwang, Young Eun Yoon, and Hyo Suk Gwon
- Subjects
Nutrient management ,Soil organic matter ,food and beverages ,Soil Science ,04 agricultural and veterinary sciences ,Soil carbon ,engineering.material ,Soil management ,Green manure ,Agronomy ,040103 agronomy & agriculture ,engineering ,0401 agriculture, forestry, and fisheries ,Environmental science ,Paddy field ,Fertilizer ,Cover crop ,Agronomy and Crop Science ,Earth-Surface Processes - Abstract
In temperate paddy fields, rice is generally cultivated under flooding for 100–140 days during summer season, and thereafter, the soil is left without management under dried soil condition during cold fallow season. In this area rice straw is mostly removed for cattle feeding. Therefore, soil organic carbon (SOC) stock could be decreased with conventional practices, but the seasonal changes of SOC stock have not been evaluated well. To investigate SOC stock changes in temperate rice paddy, two seasonal C balances during rice cropping and fallow season were compared by the net ecosystem C budget (NECB) in the chemical fertilizer (control) and two different green manure treatments for three years. In the control treatment only chemical fertilizer was conventionally fertilized for rice cropping, but maintained without human control during the fallow season. In two green manure treatments, barley and hairy vetch (hereafter, vetch) were cultivated during the fallow season, and their whole biomasses were incorporated before rice transplanting. The conventional soil management with only chemical fertilization decreased small level of SOC stock (minus 0.70–0.84 Mg C ha−1 y−1 of NECB), which was attributed by high harvest removal (approximately 70% of total C input) and mineralized C loss (30%). Cover cropping and its biomass recycling as green manure was effective to increase SOC stock. High C/N ratio of non-leguminous barley produced high biomass yield, and its biomass incorporation significantly increased SOC stock with 1.21–3.43 Mg C ha−1 y−1 of annual NECB. In comparison low C/N ratio of leguminous vetch application increased slightly SOC stock (0.17–1.34 Mg C ha−1 y−1 of NECB), due to low biomass productivity and high mineralized C loss. However, irrespective with fertilization background, approximately 70% of mineralized C loss were occurred during the cold fallow season. Rice grain yields were similar between the control and hairy vetch treatment, but around 10% lower in barley treatment. Conclusively, high C/N ratio of cover crop cultivation during the fallow season could be better to increase SOC stock in mono-rice paddy, but additional nutrient management to increase rice productivity should be developed for barley utilization as green manure.
- Published
- 2019
- Full Text
- View/download PDF
35. Importance of annual monitoring for evaluating the direct nitrous oxide emission factor in temperate mono-rice paddy fields
- Author
-
Jeong Gu Lee, Seung Tak Jung, Jessie Gutierrez-Suson, Muhammad Israr Khan, Pil Joo Kim, and Gil Won Kim
- Subjects
0106 biological sciences ,Ecology ,Field experiment ,Soil Science ,chemistry.chemical_element ,04 agricultural and veterinary sciences ,Nitrous oxide ,engineering.material ,01 natural sciences ,Agricultural and Biological Sciences (miscellaneous) ,Nitrogen ,chemistry.chemical_compound ,chemistry ,Agronomy ,040103 agronomy & agriculture ,engineering ,Temperate climate ,0401 agriculture, forestry, and fisheries ,Paddy field ,Environmental science ,Nitrification ,Fertilizer ,Cropping ,010606 plant biology & botany - Abstract
In temperate mono-rice paddy fields, rice is cultivated for 100–140 days under submerged conditions during the summer period, and thereafter, the field remains under dry conditions during the winter and spring seasons. However, the early developed nitrous oxide (N2O) emission factor (EF) was only based on seasonal (rice cropping period) N2O fluxes, which resulted in lower N2O EF than the default value (0.3%) used by the Intergovernmental Panel on Climate Change (IPCC). Furthermore, the long fallow season may be favorable for nitrification and substantially result in increased N2O emissions. A two-year field experiment was conducted to evaluate the effect of N2O emissions during the dry fallow season on the annual N2O EF. The N2O emission rates were sequentially characterized during the rice cropping and the fallow season under four different levels of nitrogen (N) fertilizer for rice cultivation. The urea was applied at four different (0, 45, 90 and 180 kg N ha−1) levels, and rice was cultivated under submerged conditions during late May to early October. The seasonal N2O fluxes during the rice cropping and fallow seasons clearly increased with increasing N application rates. In the N fertilized plots, the mean N2O emission rates were higher during the fertilized cropping season than the fallow season, but the seasonal fluxes were much higher during the unfertilized fallow season, due to the long dry period. The seasonal N2O EF, which was estimated by the increased N2O flux with N fertilizer, was only 0.0015–0.0017 kg N2O-N kg−1 N during rice cropping. However, the annual N2O EF combining the two seasonal N2O fluxes markedly increased to 0.0028–0.0031 kg N2O-N kg−1 N, which was very close to the N2O EF of the IPCC. Conclusively, the N2O EF in mono-rice paddy fields should be developed using the annual N2O fluxes and not only the cropping seasonal N2O fluxes.
- Published
- 2019
- Full Text
- View/download PDF
36. Taxonomic and functional responses of soil microbial communities to slag-based fertilizer amendment in rice cropping systems
- Author
-
Pil Joo Kim, Suvendu Das, Muhammad Ashraful Alam, Joy D. Van Nostrand, Muhammad Israr Khan, and Hyo Suk Gwon
- Subjects
010504 meteorology & atmospheric sciences ,Amendment ,010501 environmental sciences ,engineering.material ,Biology ,01 natural sciences ,Soil ,Nutrient ,RNA, Ribosomal, 16S ,Soil pH ,Sustainable agriculture ,Ecosystem ,Fertilizers ,lcsh:Environmental sciences ,Soil Microbiology ,0105 earth and related environmental sciences ,General Environmental Science ,lcsh:GE1-350 ,Oryza sativa ,Bacteria ,Microbiota ,food and beverages ,Agriculture ,Oryza ,Agronomy ,engineering ,Fertilizer ,Phosphorus utilization - Abstract
The effective utilization of slag-based Silicon fertilizer (silicate fertilizer) in agriculture to improve crop productivity and to mitigate environmental consequences turns it into a high value added product in sustainable agriculture. Despite the integral role of soil microbiome in agricultural production and virtually all ecosystem processes, our understanding of the microbial role in ecosystem functions and agricultural productivity in response to the silicate fertilizer amendment is, however, elusive. In this study, using 16S rRNA gene and ITS amplicon illumina sequencing and a functional gene microarray, i.e., GeoChip 5, we report for the first time the responses of soil microbes and their functions to the silicate fertilizer amendment in two different geographic races of Oryza sativa var. Japonica (Japonica rice) and var. Indica (Indica rice). The silicate fertilizer significantly increased soil pH, photosynthesis rate, nutrient (i.e., C, Si, Fe, P) availability and crop productivity, but decreased N availability and CH4 and N2O emissions. Moreover, the silicate fertilizer application significantly altered soil bacterial and fungal community composition and increased abundance of functional genes involved in labile C degradation, C and N fixation, phosphorus utilization, CH4 oxidation, and metal detoxification, whereas those involve in CH4 production and denitrification were decreased. The changes in the taxonomic and functional structure of microbial communities by the silicate fertilizer were mostly regulated by soil pH, plant photosynthesis, and nutrient availability. This study provides novel insights into our understanding of microbial functional processes in response to the silicate fertilizer amendment in rice cropping systems and has important implications for sustainable rice production. Keywords: Microbial responses/feedbacks, Silicate fertilization, GeoChip, Functional genes, Illumina sequencing
- Published
- 2019
- Full Text
- View/download PDF
37. Optimum N rate for grain yield coincides with minimum greenhouse gas intensity in flooded rice fields
- Author
-
Pil Joo Kim, Jessie Gutierrez-Suson, and Gil Won Kim
- Subjects
Soil Science ,Flux ,Nitrous oxide ,Methane ,chemistry.chemical_compound ,Agronomy ,chemistry ,Yield (chemistry) ,Greenhouse gas ,Environmental science ,Paddy field ,Grain yield ,Agronomy and Crop Science ,Intensity (heat transfer) - Abstract
Excessive application of N fertilizer to rice results in water and atmospheric pollution including greenhouse gas (GHG) emissions. Therefore, N fertilizer management needs to be optimized taking into account grain yield, global warming potential (GWP, Mg CO2 eq. ha−1) and GHG intensity (GHGI, kg CO2 eq. kg−1 grain). However, the tradeoffs between the effects of N rate on rice grain yield, GWP and GHGI have not been adequately evaluated. Therefore, field experiments to determine the effect of N rate (as urea) on yield, GWP and GHGI were conducted in a typical flooded, transplanted rice paddy in a temperate environment. Methane (CH4) and nitrous oxide (N2O) emission rates were determined throughout the entire year (both during growing and fallow seasons) over two years. Rice grain yield showed a quadratic response to N rate, and the maximum yield (6.7–6.8 t ha−1) was achieved at 112–119 kg N ha−1, 50% higher than the yield of the control (0 kg N ha−1). Increasing N rate increased the seasonal N2O flux by 4.56–7.11 g N2O kg−1 N, but N2O flux contributed less than 7% of the total GWP. The GWP was mainly determined by the CH4 flux, which showed a relatively flat quadratic response to N rate, peaking at 124–138 kg N ha−1. Thus, GWP also showed a quadratic response to N rate, peaking at 122–130 kg N ha−1. The GHGI decreased as N rate increased and was the lowest (1.10–1.28 kg CO2-eq. kg−1 grain yield) at 104–112 kg N ha−1, approximately 20% lower than GHGI in the 0 N treatment. In conclusion, the N rate for maximum yield was similar to the N rate for minimum GHGI, mainly because of the small effect of N rate on CH4 emissions and the low magnitude of N2O emissions. Thus, GHGI was largely driven by grain yield, so the N rate for maximum grain yield was similar to the N rate for maximum GHGI. Proper N fertilization is essential in rice farming systems to increase crop productivity and reduce the global warming impact (GWP and GHGI).
- Published
- 2019
- Full Text
- View/download PDF
38. Source partitioning and emission factor of nitrous oxide during warm and cold cropping seasons from an upland soil in South Korea
- Author
-
Pil Joo Kim, Muhammad Israr Khan, Song Rae Cho, Ji Yeon Lim, Hyun Ji Song, Suvendu Das, and Muhammad Ashraful Alam
- Subjects
Environmental Engineering ,010504 meteorology & atmospheric sciences ,business.industry ,chemistry.chemical_element ,Nitrous oxide ,010501 environmental sciences ,engineering.material ,01 natural sciences ,Pollution ,Nitrogen ,chemistry.chemical_compound ,Flux (metallurgy) ,Agronomy ,chemistry ,Agriculture ,Greenhouse gas ,Urea ,engineering ,Environmental Chemistry ,Environmental science ,Fertilizer ,business ,Waste Management and Disposal ,Cropping ,0105 earth and related environmental sciences - Abstract
Nitrous oxide (N2O) is a major greenhouse gas (GHG) with high global warming potential. A majority of the N2O flux comes from agricultural sources, mainly due to nitrogen (N) fertilization. The soil N2O flux, induced by N fertilization, mainly originated from two different sources, i.e., fertilizer and soil organic nitrogen (SON). It is essential to know the individual contribution of these two different sources in total N2O flux for planning necessary mitigation strategies. It is also indispensable to know the seasonal difference of emission factors (EF) for having more accurate N2O inventory. Therefore, an experiment was conducted in a South Korean upland soil during summer and winter seasons using 15N labeled urea as an artificial N source and source specific N2O emissions were distinguished under different environmental conditions. To characterize the N2O emissions from urea, 0, 50, 100 and 200% of the Korean N recommendation rate was selected for specified crops. The Korean N recommendation rate for red pepper (Capsicum annuum) and garlic (Allium sativum) was 190 and 250 kg N ha−1, respectively. Direct emissions from urea were estimated from the difference of 15N2O flux emitted from 15N-urea treated soil and the natural abundance of 15N2O. From total N2O fluxes, urea originated N2O flux was 0.87% and 0.13% of the applied N in warm and cold seasons, respectively and the rest comes from SON. Nitrous oxide EF in the warm season was 2.69% of applied N and in the cold season that was 0.25%. Nitrous oxide fluxes showed a significant exponential relationship with soil temperature. The results show the necessity of considering the different N2O EF for warm and cold cropping seasons to reduce uncertainty in N2O inventory. The findings of this research may help better understand N2O source partitioning and the emission budget from warm and cold cropping seasons.
- Published
- 2019
- Full Text
- View/download PDF
39. Evaluation of the carbon dioxide (CO2) emission factor from lime applied in temperate upland soil
- Author
-
Song Rae Cho, Jeong Gu Lee, Gil Won Kim, Pil Joo Kim, Gun Yeob Kim, and Seung Tak Jeong
- Subjects
Dolomite ,Soil Science ,04 agricultural and veterinary sciences ,010501 environmental sciences ,engineering.material ,01 natural sciences ,Atmosphere ,chemistry.chemical_compound ,chemistry ,Soil pH ,Environmental chemistry ,Carbon dioxide ,Soil water ,040103 agronomy & agriculture ,Temperate climate ,engineering ,0401 agriculture, forestry, and fisheries ,Environmental science ,Carbonate ,0105 earth and related environmental sciences ,Lime - Abstract
Agricultural liming materials are broadly utilized in the world to ameliorate soil acidity. Crushed limestone (CaCO3) and dolomite (MgCO3·CaCO3) are most common liming materials. The CO2 emission coefficient was proposed as 0.12 Mg C per Mg for CaCO3 by the Intergovernmental Panel on Climate Change (IPCC), which indicates that 100% of C in CaCO3 is eventually released to the atmosphere in the form of CO2. However, this assumption appears unlikely based on current knowledge of the very low solubility of CaCO3 and carbonate transport through soil. To develop the direct CO2 emission factor from the C-containing liming materials applied in moderately acidic soil, CaCO3 was applied in a typical temperate upland soil at different levels (0–2 Mg ha−1 yr−1), and the CO2 emission rates were determined using the closed chamber method for two years. The direct CO2 emission factor from CaCO3 was estimated using 13CO2 fluxes from 13C-CaCO3 applied soils. Approximately 0.026 Mg C per Mg of CaCO3 was emitted as CO2 from CaCO3 in cropping lands. This value was much lower than the IPCC default value (0.12 Mg C per Mg of CaCO3). The current CO2 emission coefficient was comparable with the United States Environmental Protection Agency (EPA) emission factor (0.046 Mg C per Mg of CaCO3) from the agricultural field. If the EPA emission factor from the ocean (0.013 Mg C per Mg of CaCO3) is added to the currently developed CO2 emission factor of the inner agricultural field, the total CO2 emission factor from lime may be close to 0.039 Mg C per Mg of CaCO3 in the selected upland soil. Therefore, we propose that the current IPCC guideline value of the CO2 emission factor from lime should be revised as 0.039 Mg C per Mg of CaCO3 for Korean upland soils.
- Published
- 2019
- Full Text
- View/download PDF
40. Composting and compost application: Trade-off between greenhouse gas emission and soil carbon sequestration in whole rice cropping system
- Author
-
Gil Won Kim, Seung Tak Jeong, Song Rae Cho, Pil Joo Kim, and Jeong Gu Lee
- Subjects
Renewable Energy, Sustainability and the Environment ,Compost ,020209 energy ,Strategy and Management ,05 social sciences ,02 engineering and technology ,Building and Construction ,Soil carbon ,engineering.material ,Manure ,Soil quality ,Industrial and Manufacturing Engineering ,Soil management ,Agronomy ,Greenhouse gas ,050501 criminology ,0202 electrical engineering, electronic engineering, information engineering ,engineering ,Environmental science ,Cropping system ,Life-cycle assessment ,0505 law ,General Environmental Science - Abstract
Manure application showed contrasting effects on soil quality and greenhouse gas (GHG) emissions, in particular methane (CH4) emissions in a rice cropping system. Therefore, to mitigate CH4 emissions, stabilized manure like compost is recommended without considering the additional GHG emissions during the industrial processes and soil organic carbon (SOC) stock changes. To determine the integrated effect of compost utilization on the net global warming potential (GWP) of a rice cropping system, the fluxes of GHGs during the whole process were computed using a life cycle assessment (LCA) method. The model framework was composed of GHG fluxes from two compartments: the industrial activities, and the composting and rice cropping processes. Since manure application can increase SOC stock, the annual SOC stock changes were analyzed by the net ecosystem C budget (NECB). Manure applications significantly increased rice productivity and the net primary production (NPP) as a C input source without difference between fresh and composted manures. NPK+fresh manure application significantly increased CH4 and N2O emissions by 81% and 37% over the NPK treatment in rice cropping system, respectively, and depleted SOC stock with 1.3 Mg C ha−1 year−1, due to priming effect. As a result, NPK+fresh manure application increased the net GWP by 80% over the NPK treatment. In comparison, NPK+compost utilization decreased the net GWP by 30% over that of the NPK+fresh manure during the whole process. Manure composting increased the GWP of the industrial processes by 7%, but the 20% reduction of CH4 flux and 0.5 Mg C ha−1 year−1 of SOC stock increase significantly decreased the net GWP during the whole rice cropping process. As a result, the GHG intensity which means the net GWP per gain yield was not different between the NPK+composted manure and the NPK treatments. In conclusion compost application can be a reasonable soil management strategy to reduce GHG emission impact and to increase crop productivity in rice cropping systems.
- Published
- 2019
- Full Text
- View/download PDF
41. Depletion of soil organic carbon stocks are larger under plastic film mulching for maize
- Author
-
Pil Joo Kim, Chang Hoon Lee, Hyun Young Hwang, Mun Hyeong Park, and Jeong Gu Lee
- Subjects
Agronomy ,Soil organic carbon stocks ,Plastic film ,Soil Science ,Primary production ,Environmental science ,Cover crop ,Mulch - Published
- 2019
- Full Text
- View/download PDF
42. Unexpected high suppression of ammonia volatilization loss by plastic film mulching in Korean maize cropping system
- Author
-
Ho Gyeong Chae, Hyeon Ji Song, Mohammad Saiful Islam Bhuiyan, Pil Joo Kim, and Jeong Gu Lee
- Subjects
Ecology ,Animal Science and Zoology ,Agronomy and Crop Science - Published
- 2022
- Full Text
- View/download PDF
43. Environmental impacts of agricultural plastic film mulch: Fate, consequences, and solutions
- Author
-
Fan Ding, Davey L. Jones, David R. Chadwick, Pil Joo Kim, Rui Jiang, and Markus Flury
- Subjects
Environmental Engineering ,Environmental Chemistry ,Pollution ,Waste Management and Disposal - Published
- 2022
- Full Text
- View/download PDF
44. Biochar as soil amendment: Syngas recycling system is essential to create positive carbon credit
- Author
-
Ronley C. Canatoy, Song Rae Cho, Snowie Jane C. Galgo, Seung Tak Jeong, and Pil Joo Kim
- Subjects
Environmental Engineering ,Swine ,Global warming ,Environmental engineering ,Nitrous Oxide ,Agriculture ,Combustion ,Pollution ,Manure ,Carbon ,Soil ,Greenhouse gas ,Charcoal ,Soil water ,Biochar ,Environmental Chemistry ,Environmental science ,Animals ,Waste Management and Disposal ,Pyrolysis ,Syngas - Abstract
Biochar utilization is accepted as the most cost-effective practice to mitigate global warming via increase in soil C stock. However, its utilization effect on greenhouse gas (GHG) fluxes was evaluated only within land application without considering industrial processes. To evaluate the net effect of biochar utilization on global warming within whole system boundary, swine manure-saw dust mixture was pyrolyzed under four different temperatures, and GHG fluxes were characterized under with/without syngas recycling systems. To determine GHG fluxes from biochar amended soil, 40 Mg ha‐1 of biochar was mixed with soil and incubated under flooded and dried soil conditions. Finally, the effect of biochar utilization was generalized using net global warming potential (GWP) from industrial process to land application. Under without syngas recycling system, huge amounts of GHGs were emitted during pyrolysis, and GHG fluxes highly increased with increasing pyrolysis temperature, due to direct and indirect GHG emissions from feedstock combustion and electricity, respectively. However, syngas recycling system removed most of GHGs, except for direct N2O and indirect GHG emissions from electricity. Biochar application was very effective to mitigate GHG emissions within soil system boundary, and biochar produced at higher pyrolysis temperature showed higher effectivity in decreasing GHG fluxes. Within the whole system boundary from pyrolysis to soil application, without the installation of syngas recycling system, fresh manure application was more effective than biochar to reduce GHG emissions, regardless of soil water conditions. However, with the installation of syngas recycling system, biochar application was much more effective than fresh manure to decrease GHG fluxes. Biochar produced at higher temperature had higher effectivity to mitigate global warming impacts. In conclusion, to functionally mitigate global warming in soils, biochar should be produced in pyrolysis reactors equipped with syngas recycling system under higher temperature.
- Published
- 2021
45. Cover cropping and its biomass incorporation: Not enough to compensate the negative impact of plastic film mulching on global warming
- Author
-
Jeong Gu Lee, Pil Joo Kim, Song Rae Cho, Gil Won Kim, and Ho Gyeong Chae
- Subjects
Environmental Engineering ,Plastic film ,Primary production ,Biomass ,Pollution ,Global Warming ,Green manure ,Productivity (ecology) ,Agronomy ,Greenhouse gas ,Environmental Chemistry ,Environmental science ,Cover crop ,Waste Management and Disposal ,Mulch ,Plastics - Abstract
Plastic film mulching (FM) became a general practice to enhance crop productivity and its net primary production (NPP), but it can increase greenhouse gas (GHG) emissions. The proper addition of organic amendments might effectively decrease the impact of FM on global warming. To evaluate the feasibility of biomass addition on decreasing this negative influence, cover crop biomass as a green manure was incorporated with different recycling levels (0–100% of aboveground biomass) under FM and no-mulching. The net global warming potential (GWP) which integrated with soil C stock change and GHG (N2O and CH4) fluxes with CO2-equivalent was evaluated during maize cultivation. Under the same biomass incorporation, FM significantly enhanced the grain productivity and NPP of maize by 22–61 and 18–58% over no-mulching, respectively. In contrast, FM also highly increased the respired C loss, which was 11–95% higher than NPP increase, over no-mulching. Irrespective with biomass recycling ratio and mulching system, negative NECB which indicates the decrease of soil C stock was observed, mainly due to big harvest removal. FM decreased more soil C stock by 57–158% over no-mulching, but its C stock was clearly increased with increasing biomass addition. FM significantly increased total N2O and CH4 fluxes by 4–61 and 140–600% over no-mulching, respectively. Soil C stock changes mainly decided net GWP scale, but N2O and CH4 fluxes negligibly influenced. As a result, FM highly increased net GWP over no-mulching, while this net GWP was clearly decreased with increasing biomass application. However, cover cropping, and its biomass recycling was not enough to compensate the negative impact of FM on global warming. Therefore, more biomass incorporation might be essential to compensate this negative effect of FM.
- Published
- 2021
46. High organic carbon input can accelerate global warming in rice paddy soil: increase unprotected soil organic carbon and CH4 emission
- Author
-
Hyeonji Song, Ronley C. Canatoy, Snowie Jane C. Galgo, Pil Joo Kim, and Hogyeong Chae
- Subjects
Total organic carbon ,Environmental chemistry ,Global warming ,Environmental science ,Paddy field ,Soil carbon - Abstract
Soil C sequestration is widely regarded as the most reasonable way to mitigate global warming. Traditionally, a high amount of organic carbon (OC) input is strongly recommended to increase soil organic carbon (SOC) stocks in croplands. However, according to the whole-soil saturation theory, stable SOC (mineral-associated SOC) accumulation can be limited at a certain point, relying on silt and clay contents. Most studies based on the theory were conducted in aerobic soil condition. This relationship is still uncertain in a rice paddy that makes up 10.8% of total arable land and has an anaerobic soil environment. In this study, we investigated high OC addition can enhance soil C sequestration in a rice paddy. We added different OC levels (0.5, 2.0, 2.9, and 4.6 Mg C ha-1 yr-1) in rice paddy by incorporating cover crop biomass for nine years. SOC stock and soil saturation degree were determined. Unprotected, sand-associated, silt-associated, and clay-associated SOC were separated via density and size fractionation. Respired C losses (CO2-C and CH4-C) were monitored using the static closed chamber method. SOC stock did not linearly increase with higher amount of OC input. The carbon sequestration efficiency (i.e. the increase of SOC per unit of OC input) decreases with the amount OC added. Higher OM input significantly increased unprotected labile SOC content. Unprotected SOC (-3) exponentially increased as the SOC saturation degree was higher. On the other hand, stable SOC content did not exhibit a linear relationship with the SOC saturation degree. The higher OC addition level exponentially increased respired C loss. In particular, C loss via CH4 was more sensitive to high OC addition. We conclude that higher OC addition in rice paddy without consideration in terms of SOC stock saturation point can accelerate global warming by increasing labile SOC accumulation and CH4 emission.
- Published
- 2021
- Full Text
- View/download PDF
47. Agricultural nitrogen and phosphorus balances of Korea and Japan: Highest nutrient surplus among OECD member countries
- Author
-
Mohammad Saiful Islam Bhuiyan, Ji Yeon Lim, Jeong Gu Lee, Seul Bi Lee, and Pil Joo Kim
- Subjects
010504 meteorology & atmospheric sciences ,Nitrogen ,Health, Toxicology and Mutagenesis ,chemistry.chemical_element ,Environmental pollution ,010501 environmental sciences ,engineering.material ,Toxicology ,01 natural sciences ,Agricultural science ,Nutrient ,Japan ,Republic of Korea ,Agricultural productivity ,Fertilizers ,Organisation for Economic Co-Operation and Development ,0105 earth and related environmental sciences ,Soil health ,business.industry ,Phosphorus ,Agriculture ,General Medicine ,Nutrients ,Pollution ,Manure ,chemistry ,engineering ,Environmental science ,Fertilizer ,business ,Environmental Monitoring - Abstract
Excessive nutrient balance is a very crucial issue for environmental hazards. The constant addition of high-amounts of nutrient sources in agricultural production generates negative environmental conditions in Korea and Japan yet to be resolved. Therefore, it is obligatory to comprehend the nutrient (nitrogen (N) and phosphorus (P)) balance that is assessed by the difference between nutrient input and output in the soil surface in Korea and Japan. Among 34 Economic Co-operation and Development (OECD) countries, Korea and Japan had the highest N and P balances and thus both countries are primarily responsible for severe environmental pollution via nutrient release. The cultivable land area in both countries has constantly decreased during 1990–2017 at approximately 20 and 15% in Korea and Japan, respectively. Even N and P use efficiency sharply decreased with increasing N and P balance in both targeted countries. Japanese P balance, Korean N and P balances were decreased after the mid-1990s whereas, Japanese N balance almost unchanged for the last 28 years. Unlike chemical fertilizer input, Korean manure input level significantly increased from 78 kg N ha−1 in 1990 to 157 kg N ha−1 in 2017. Japanese manure input level was higher than that of chemical fertilizer without any big change for the last 28 years. The lion share of high N and P balance in both countries could generate from manure inputs, therefore, the number of livestock and their produced debris need to be used with more cautious for the reduction of national N and P surpluses at a benchmark level. These findings ensure to make a more environment friendly policy that can further reduce nutrient balance as well as improve soil health.
- Published
- 2021
48. Effect of plastic film mulching on maize productivity and nitrogen use efficiency under organic farming in South Korea
- Author
-
Jeong Gu Lee, Pil Joo Kim, Hyun Young Hwang, Song Rae Cho, and Ho Gyeong Chae
- Subjects
Environmental Engineering ,010504 meteorology & atmospheric sciences ,Nitrogen ,Biomass ,010501 environmental sciences ,01 natural sciences ,Zea mays ,Green manure ,Soil ,Nutrient ,Republic of Korea ,Environmental Chemistry ,Cover crop ,Fertilizers ,Waste Management and Disposal ,0105 earth and related environmental sciences ,Organic Agriculture ,Nutrient management ,Agriculture ,Pollution ,Agronomy ,Productivity (ecology) ,Organic farming ,Environmental science ,Mulch ,Plastics - Abstract
Winter cover crop cultivation and its biomass recycling as green manure (GM) were accepted as an ideal nutrient management practice in temperate organic farming fields. Since its biomass growth was boosted with air temperature rising from late Spring to early Summer, this stage overlapped with cash crops' seeding or transplanting. Thus, organic farmers were suffering from low crop productivity, due to delayed mineralization of incorporated biomass. To accelerate the mineralization of biomass nutrients and control weeds, plastic film mulching (PM) was broadly utilized in organic farming fields of temperate-monsoon climate region. However, the effect of PM on increasing nutrient use efficiency was not properly quantified in GM amended soil. To determine the effect of PM on crop productivity and nutrient use efficiency in GM amended soils, PM and no-mulching treatments were installed under different levels of GM biomass amended soils (0, 25, 50 and 100% of harvested aboveground biomass). The biomass productivity of barley and hairy vetch mixture as cover crop and biomass nitrogen productivity were dramatically increased from the mid May to the early June. PM significantly improved soil temperature and moisture regimes during maize cropping seasons, and then increased inorganic N (NH4+ and NO3-) contents in soils. These improved soil properties under PM highly increased maize productivity and nitrogen use efficiency (NUE). Comparing with no-mulching, as GM application level was increased, the effect of PM on increasing maize productivity became greater, but its effect on increasing NUE became smaller. In conclusion, PM could be very useful tool to improve productivity and NUE of cash crop maize in organic cropping fields, in which the harvesting time of GM biomass might be sustained to increase GM biomass productivity.
- Published
- 2021
49. Uncertainty of methane emissions coming from the physical volume of plant biomass inside the closed chamber was negligible during cropping period
- Author
-
Gil Won Kim, Song Rae Cho, Seung Tak Jeong, Pil Joo Kim, and Ji Yeon Lim
- Subjects
Methane emissions ,Atmospheric Science ,Biomass ,Plant Science ,Closed chamber ,Methane ,chemistry.chemical_compound ,Soil ,Flooding ,Agricultural Soil Science ,Cultivar ,Plant Growth and Development ,Multidisciplinary ,Ecology ,Geography ,Uncertainty ,Eukaryota ,food and beverages ,Agriculture ,Plants ,Chemistry ,Experimental Organism Systems ,Physical Sciences ,Medicine ,Research Article ,Ecological Metrics ,Science ,Soil Science ,Crops ,Research and Analysis Methods ,Greenhouse Gases ,Ecological Productivity ,Plant and Algal Models ,Republic of Korea ,Grasses ,Atmosphere ,Ecology and Environmental Sciences ,Organisms ,Chemical Compounds ,Water ,Biology and Life Sciences ,Oryza ,Agronomy ,Volume (thermodynamics) ,chemistry ,Physical Geography ,Animal Studies ,Earth Sciences ,Paddy field ,Environmental science ,Rice ,Hydrology ,Cropping ,Crop Science ,Cereal Crops ,Developmental Biology - Abstract
In rice paddy, the closed chamber method is broadly used to estimate methane (CH4) emission rate. Since rice plants can significantly affect CH4 production, oxidation and emission, rice plantation inside the chamber is standardized in IPCC guidelines. Methane emission rate is calculated using the increased concentration inside the headspace. Biomass growth might decrease the headspace volume, and thus CH4 emission rates might be overestimated. To evaluate the influence of chamber headspace decreased by rice plant development on CH4 emission rates, five Korean rice cultivars were cultivated in a typical rice paddy, and physical volume changes in rice biomass were assayed using water displacement method. The recommended acrylic closed chambers (H. 1.2 m x W. 0.6 m x L. 0.6 m) were installed, and eight rice plants were transplanted inside the chamber with the same space interval with the outside. Biomass growth significantly decreased the headspace volume of the chamber. However, this volume covered only 0.48–0.55% of the closed chamber volume at the maximum growth stage. During the whole cropping period, mean 0.24–0.28% of chamber headspace was allocated by plant biomass, and thus this level of total CH4 emissions was overestimated. However, this overestimation was much smaller than the errors coming from other investigation processes (i.e., chamber closing hour, temperature recording, inconstant flooding level, different soil environments, etc.) and rice physiological changes. In conclusion, the influence of physical biomass volume inside the closed chamber was negligible to make the error in total CH4 emission assessment in rice paddies.
- Published
- 2021
50. Aerobic methanotrophy and co-occurrence networks of a tropical rainforest and oil palm plantations in Malaysia
- Author
-
Ho, Adrian, Tan, Ali Kee Zuan, Mendes, Lucas W., Hyo, Jung Lee, Zulkeflee, Zufarzaana, van Dijk, Hester, Pil, Joo Kim, Horn, Marcus A., Ho, Adrian, Tan, Ali Kee Zuan, Mendes, Lucas W., Hyo, Jung Lee, Zulkeflee, Zufarzaana, van Dijk, Hester, Pil, Joo Kim, and Horn, Marcus A.
- Abstract
Oil palm (OP) plantations are gradually replacing tropical rainforest in Malaysia, one of the largest palm oil producers globally. Conversion of lands to OP plantations has been associated with compositional shifts of the microbial community, with consequences on the greenhouse gas (GHG) emissions. While the impact of the change in land use has recently been investigated for microorganisms involved in N2O emission, the response of the aerobic methanotrophs to OP agriculture remains to be determined. Here, we monitored the bacterial community composition, focusing on the aerobic methanotrophs, in OP agricultural soils since 2012, 2006, and 1993, as well as in a tropical rainforest, in 2019 and 2020. High-affinity methane uptake was confirmed, showing significantly lower rates in the OP plantations than in the tropical rainforest, but values increased with continuous OP agriculture. The bacterial, including the methanotrophic community composition, was modified with ongoing OP agriculture. The methanotrophic community composition was predominantly composed of unclassified methanotrophs, with the canonical (Methylocystis) and putative methanotrophs thought to catalyze high-affinity methane oxidation present at higher relative abundance in the oldest OP plantation. Results suggest that the methanotrophic community was relatively more stable within each site, exhibiting less temporal variations than the total bacterial community. Uncharacteristically, a 16S rRNA gene-based co-occurrence network analysis revealed a more complex and connected community in the OP agricultural soil, which may influence the resilience of the bacterial community to disturbances. Overall, we provide a first insight into the ecology and role of the aerobic methanotrophs as a methane sink in OP agricultural soils.
- Published
- 2021
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.