724 results on '"Pickering, Amy J."'
Search Results
2. Response to “Comment on ‘Adoption of Point-of-Use Chlorination for Household Drinking Water Treatment: A Systematic Review’”
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Crider, Yoshika S, Ray, Isha, and Pickering, Amy J
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Biomedical and Clinical Sciences ,Environmental Sciences ,Health Sciences ,Drinking Water ,Halogenation ,Medical and Health Sciences ,Toxicology ,Biomedical and clinical sciences ,Environmental sciences ,Health sciences - Published
- 2023
3. Geographic pair matching in large-scale cluster randomized trials
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Arnold, Benjamin F., Rerolle, Francois, Tedijanto, Christine, Njenga, Sammy M., Rahman, Mahbubur, Ercumen, Ayse, Mertens, Andrew, Pickering, Amy J., Lin, Audrie, Arnold, Charles D., Das, Kishor, Stewart, Christine P., Null, Clair, Luby, Stephen P., Colford, Jr, John M., Hubbard, Alan E., and Benjamin-Chung, Jade
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- 2024
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4. Effects of High Temperature and Heavy Precipitation on Drinking Water Quality and Child Hand Contamination Levels in Rural Kenya
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Powers, Julie E, Mureithi, Maryanne, Mboya, John, Campolo, Jake, Swarthout, Jenna M, Pajka, Joseph, Null, Clair, and Pickering, Amy J
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Foodborne Illness ,Prevention ,Pediatric ,Aetiology ,2.2 Factors relating to the physical environment ,Humans ,Child ,Child ,Preschool ,Water Quality ,Escherichia coli ,Drinking Water ,Temperature ,Kenya ,Diarrhea ,Drinking water quality ,hands ,weather ,climate change ,pathogens ,E ,coli ,low income ,E. coli ,Environmental Sciences - Abstract
Climate change may impact human health through the influence of weather on environmental transmission of diarrhea. Previous studies have found that high temperatures and heavy precipitation are associated with increased diarrhea prevalence, but the underlying causal mechanisms have not been tested and validated. We linked measurements of Escherichia coli in source water (n = 1673), stored drinking water (n = 9692), and hand rinses from children
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- 2023
5. Evaluating the hidden costs of drinking water treatment technologies
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Cherukumilli, Katya, Ray, Isha, and Pickering, Amy J
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Clean Water and Sanitation - Published
- 2023
6. Effects of water, sanitation, and hygiene interventions on detection of enteropathogens and host-specific faecal markers in the environment: a systematic review and individual participant data meta-analysis.
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Mertens, Andrew, Arnold, Benjamin F, Benjamin-Chung, Jade, Boehm, Alexandria B, Brown, Joe, Capone, Drew, Clasen, Thomas, Fuhrmeister, Erica, Grembi, Jessica A, Holcomb, David, Knee, Jackie, Kwong, Laura H, Lin, Audrie, Luby, Stephen P, Nala, Rassul, Nelson, Kara, Njenga, Sammy M, Null, Clair, Pickering, Amy J, Rahman, Mahbubur, Reese, Heather E, Steinbaum, Lauren, Stewart, Jill, Thilakaratne, Ruwan, Cumming, Oliver, Colford, John M, and Ercumen, Ayse
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Animals ,Humans ,Diarrhea ,Hygiene ,Prospective Studies ,Sanitation ,Child ,Drinking Water ,Prevention ,Aetiology ,2.2 Factors relating to the physical environment ,Infection ,Clean Water and Sanitation - Abstract
BackgroundWater, sanitation, and hygiene (WASH) improvements are promoted to reduce diarrhoea in low-income countries. However, trials from the past 5 years have found mixed effects of household-level and community-level WASH interventions on child health. Measuring pathogens and host-specific faecal markers in the environment can help investigate causal pathways between WASH and health by quantifying whether and by how much interventions reduce environmental exposure to enteric pathogens and faecal contamination from human and different animal sources. We aimed to assess the effects of WASH interventions on enteropathogens and microbial source tracking (MST) markers in environmental samples.MethodsWe did a systematic review and individual participant data meta-analysis, which included searches from Jan 1, 2000, to Jan 5, 2023, from PubMed, Embase, CAB Direct Global Health, Agricultural and Environmental Science Database, Web of Science, and Scopus, of prospective studies with water, sanitation, or hygiene interventions and concurrent control group that measured pathogens or MST markers in environmental samples and measured child anthropometry, diarrhoea, or pathogen-specific infections. We used covariate-adjusted regression models with robust standard errors to estimate study-specific intervention effects and pooled effect estimates across studies using random-effects models.FindingsFew trials have measured the effect of sanitation interventions on pathogens and MST markers in the environment and they mostly focused on onsite sanitation. We extracted individual participant data on nine environmental assessments from five eligible trials. Environmental sampling included drinking water, hand rinses, soil, and flies. Interventions were consistently associated with reduced pathogen detection in the environment but effect estimates in most individual studies could not be distinguished from chance. Pooled across studies, we found a small reduction in the prevalence of any pathogen in any sample type (pooled prevalence ratio [PR] 0·94 [95% CI 0·90-0·99]). Interventions had no effect on the prevalence of MST markers from humans (pooled PR 1·00 [95% CI 0·88-1·13]) or animals (pooled PR 1·00 [95% CI 0·97-1·03]).InterpretationThe small effect of these sanitation interventions on pathogen detection and absence of effects on human or animal faecal markers are consistent with the small or null health effects previously reported in these trials. Our findings suggest that the basic sanitation interventions implemented in these studies did not contain human waste and did not adequately reduce exposure to enteropathogens in the environment.FundingBill and Melinda Gates Foundation and the UK Foreign and Commonwealth Development Office.
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- 2023
7. Learning and STEM identity gains from an online module on sequencing-based surveillance of antimicrobial resistance in the environment: An analysis of the PARE-Seq curriculum
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Bliss, Scarlet S, Abraha, Eve A, Fuhrmeister, Erica R, Pickering, Amy J, and Bascom-Slack, Carol A
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Education ,Specialist Studies In Education ,Stem Cell Research ,Humans ,Male ,Female ,Anti-Bacterial Agents ,COVID-19 ,Drug Resistance ,Bacterial ,Technology ,Curriculum ,General Science & Technology - Abstract
COVID-19 necessitated the rapid transition to online learning, challenging the ability of Science, Technology, Engineering, and Math (STEM) professors to offer laboratory experiences to their students. As a result, many instructors sought online alternatives. In addition, recent literature supports the capacity of online curricula to empower students of historically underrepresented identities in STEM fields. Here, we present PARE-Seq, a virtual bioinformatics activity highlighting approaches to antimicrobial resistance (AMR) research. Following curricular development and assessment tool validation, pre- and post-assessments of 101 undergraduates from 4 institutions revealed that students experienced both significant learning gains and increases in STEM identity, but with small effect sizes. Learning gains were marginally modified by gender, race/ethnicity, and number of extracurricular work hours per week. Students with more extracurricular work hours had significantly lower increase in STEM identity score after course completion. Female-identifying students saw greater learning gains than male-identifying, and though not statistically significant, students identifying as an underrepresented minority reported larger increases in STEM identity score. These findings demonstrate that even short course-based interventions have potential to yield learning gains and improve STEM identity. Online curricula like PARE-Seq can equip STEM instructors to utilize research-driven resources that improve outcomes for all students, but support must be prioritized for students working outside of school.
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- 2023
8. Adoption of Point-of-Use Chlorination for Household Drinking Water Treatment: A Systematic Review
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Crider, Yoshika S, Tsuchiya, Miki, Mukundwa, Magnifique, Ray, Isha, and Pickering, Amy J
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Clinical Research ,Clinical Trials and Supportive Activities ,Vaccine Related ,Prevention ,Rare Diseases ,Good Health and Well Being ,Humans ,Drinking Water ,Halogenation ,Chlorine ,Water Purification ,Water Quality ,Water Supply ,Environmental Sciences ,Medical and Health Sciences ,Toxicology - Abstract
BackgroundCentralized chlorination of urban piped water supplies has historically contributed to major reductions in waterborne illness. In locations without effective centralized water treatment, point-of-use (POU) chlorination for households is widely promoted to improve drinking water quality and health. Realizing these health benefits requires correct, consistent, and sustained product use, but real-world evaluations have often observed low levels of use. To our knowledge, no prior reviews exist on adoption of chlorine POU products.ObjectivesOur objectives were to identify which indicators of adoption are most often used in chlorine POU studies, summarize levels of adoption observed, understand how adoption changes over time, and determine how adoption is affected by frequency of contact between participants and study staff.MethodsWe conducted a systematic review of household POU chlorination interventions or programs from 1990 through 2021 that reported a quantitative measure of adoption, were conducted in low- and middle-income countries, included data collection at households, and reported the intervention start date.ResultsWe identified 36 studies of household drinking water chlorination products that met prespecified eligibility criteria and extracted data from 46 chlorine intervention groups with a variety of chlorine POU products and locations. There was no consensus definition of adoption of household water treatment; the most common indicator was the proportion of household stored water samples with free chlorine residual >0.1 or 0.2mg/L. Among studies that reported either free or total chlorine-confirmed adoption of chlorine POU products, use was highly variable (across all chlorine intervention groups at the last time point measured in each study; range: 1.5%-100%; sample size-weighted median=47%; unweighted median=58%). The median follow-up duration among intervention groups was 3 months. On average, adoption declined over time and was positively associated with frequency of contact between respondents and study staff.DiscussionAlthough prior research has shown that POU chlorine products improve health when correctly and consistently used, a reliance on individual adoption for effective treatment is unlikely to lead to the widespread public health benefits historically associated with pressurized, centralized treatment of piped water supplies. https://doi.org/10.1289/EHP10839.
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- 2023
9. StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities
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van Dijk, Lucas R, Walker, Bruce J, Straub, Timothy J, Worby, Colin J, Grote, Alexandra, Schreiber, Henry L, Anyansi, Christine, Pickering, Amy J, Hultgren, Scott J, Manson, Abigail L, Abeel, Thomas, and Earl, Ashlee M
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Human Genome ,Genetics ,Infection ,Bacteria ,Humans ,Metagenome ,Metagenomics ,Microbiota ,Microbiome ,Strain-tracking ,Environmental Sciences ,Biological Sciences ,Information and Computing Sciences ,Bioinformatics - Abstract
Human-associated microbial communities comprise not only complex mixtures of bacterial species, but also mixtures of conspecific strains, the implications of which are mostly unknown since strain level dynamics are underexplored due to the difficulties of studying them. We introduce the Strain Genome Explorer (StrainGE) toolkit, which deconvolves strain mixtures and characterizes component strains at the nucleotide level from short-read metagenomic sequencing with higher sensitivity and resolution than other tools. StrainGE is able to identify strains at 0.1x coverage and detect variants for multiple conspecific strains within a sample from coverages as low as 0.5x.
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- 2022
10. Preventive small-quantity lipid-based nutrient supplements reduce severe wasting and severe stunting among young children: an individual participant data meta-analysis of randomized controlled trials.
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Dewey, Kathryn G, Arnold, Charles D, Wessells, K Ryan, Prado, Elizabeth L, Abbeddou, Souheila, Adu-Afarwuah, Seth, Ali, Hasmot, Arnold, Benjamin F, Ashorn, Per, Ashorn, Ulla, Ashraf, Sania, Becquey, Elodie, Brown, Kenneth H, Christian, Parul, Colford, John M, Dulience, Sherlie Jl, Fernald, Lia Ch, Galasso, Emanuela, Hallamaa, Lotta, Hess, Sonja Y, Humphrey, Jean H, Huybregts, Lieven, Iannotti, Lora L, Jannat, Kaniz, Lartey, Anna, Le Port, Agnes, Leroy, Jef L, Luby, Stephen P, Maleta, Kenneth, Matias, Susana L, Mbuya, Mduduzi Nn, Mridha, Malay K, Nkhoma, Minyanga, Null, Clair, Paul, Rina R, Okronipa, Harriet, Ouédraogo, Jean-Bosco, Pickering, Amy J, Prendergast, Andrew J, Ruel, Marie, Shaikh, Saijuddin, Weber, Ann M, Wolff, Patricia, Zongrone, Amanda, and Stewart, Christine P
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Humans ,Growth Disorders ,Cachexia ,Lipids ,Dietary Supplements ,Child ,Child ,Preschool ,Infant ,Randomized Controlled Trials as Topic ,Nutrients ,child undernutrition ,complementary feeding ,home fortification ,severe malnutrition ,stunting ,wasting ,Prevention ,Clinical Research ,Nutrition ,Clinical Trials and Supportive Activities ,Pediatric ,Zero Hunger ,Engineering ,Medical and Health Sciences ,Nutrition & Dietetics - Abstract
BackgroundMeta-analyses show that small-quantity lipid-based nutrient supplements (SQ-LNSs) reduce child wasting and stunting. There is little information regarding effects on severe wasting or stunting.ObjectivesWe aimed to identify the effect of SQ-LNSs on prevalence of severe wasting (weight-for-length z score < -3) and severe stunting (length-for-age z score < -3).MethodsWe conducted a 2-stage meta-analysis of individual participant data from 14 randomized controlled trials of SQ-LNSs provided to children 6-24 mo of age. We generated study-specific and subgroup estimates of SQ-LNS compared with control and pooled the estimates using fixed-effects models. We used random-effects meta-regression to examine study-level effect modifiers. In sensitivity analyses, we examined whether results differed depending on study arm inclusion criteria and types of comparisons.ResultsSQ-LNS provision led to a relative reduction of 31% in severe wasting [prevalence ratio (PR): 0.69; 95% CI: 0.55, 0.86; n = 34,373] and 17% in severe stunting (PR: 0.83; 95% CI: 0.78, 0.90; n = 36,795) at endline. Results were similar in most of the sensitivity analyses but somewhat attenuated when comparisons using passive control arms were excluded (PR: 0.74; 95% CI: 0.57, 0.96; n = 26,327 for severe wasting and PR: 0.88; 95% CI: 0.81, 0.95; n = 28,742 for severe stunting). Study-level characteristics generally did not significantly modify the effects of SQ-LNSs, but results suggested greater effects of SQ-LNSs in sites with greater burdens of wasting or stunting, or with poorer water quality or sanitation.ConclusionsIncluding SQ-LNSs in preventive interventions to promote healthy child growth and development is likely to reduce rates of severe wasting and stunting. This meta-analysis was registered at www.crd.york.ac.uk/PROSPERO as CRD42019146592.
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- 2022
11. Influence of community-level sanitation coverage and population density on environmental fecal contamination and child health in a longitudinal cohort in rural Bangladesh.
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Contreras, Jesse D, Islam, Mahfuza, Mertens, Andrew, Pickering, Amy J, Kwong, Laura H, Arnold, Benjamin F, Benjamin-Chung, Jade, Hubbard, Alan E, Alam, Mahfuja, Sen, Debashis, Islam, Sharmin, Rahman, Mahbubur, Unicomb, Leanne, Luby, Stephen P, Colford, John M, and Ercumen, Ayse
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Feces ,Humans ,Escherichia coli ,Diarrhea ,Sanitation ,Population Density ,Toilet Facilities ,Child ,Rural Population ,Bangladesh ,Child Health ,Diarrheal disease ,Fecal contamination ,Latrine coverage ,Sanitation coverage ,WASH ,Clinical Research ,Good Health and Well Being ,Clean Water and Sanitation ,Public Health and Health Services ,Epidemiology ,Toxicology - Abstract
BackgroundHousehold-level sanitation interventions have had limited effects on child health or environmental contamination, potentially due to low community coverage. Higher community-level coverage with safely managed sanitation can reduce opportunities for disease transmission.MethodsWe estimated associations between community sanitation coverage, environmental fecal contamination, and child health among 360 compounds in the control arm of the WASH Benefits trial in rural Bangladesh (NCT01590095). In each compound, we enumerated E. coli in environmental samples and recorded the 7-day prevalence of caregiver-reported diarrheal disease and acute respiratory infections (ARI) in children under five. We observed indicators of latrine access and quality among all neighboring compounds within 100 m of study compounds. We defined community coverage as the proportion of neighboring compounds with (1) at least one latrine, and (2) exclusively hygienic latrines (improved facility observed to safely contain feces), within both 50 m and 100 m of study compounds. We assessed effect modification by population density and season.ResultsAdjusted for confounders, study compounds surrounded by 100% coverage of at least one latrine per compound within 50 m had slightly lower log10E. coli counts in stored water (Δlog = -0.13, 95% CI -0.26, -0.01), child hand rinses (Δlog = -0.13, 95% CI -0.24, -0.02), and caregiver hand rinses (Δlog = -0.16, 95% CI -0.29, -0.03) and marginally lower prevalence of diarrheal disease (prevalence ratio [PR] = 0.82, 95% CI 0.64, 1.04) and ARI (PR = 0.84, 95% CI 0.69, 1.03) compared to compounds surrounded by
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- 2022
12. Differential Overlap in Human and Animal Fecal Microbiomes and Resistomes in Rural versus Urban Bangladesh
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Swarthout, Jenna M, Fuhrmeister, Erica R, Hamzah, Latifah, Harris, Angela R, Ahmed, Mir A, Gurley, Emily S, Satter, Syed M, Boehm, Alexandria B, and Pickering, Amy J
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Genetics ,Clinical Research ,Behavioral and Social Science ,Infectious Diseases ,Basic Behavioral and Social Science ,Aetiology ,2.2 Factors relating to the physical environment ,Infection ,Animals ,Anti-Bacterial Agents ,Bacteria ,Bangladesh ,Chickens ,Escherichia coli ,Genes ,Bacterial ,Humans ,Microbiota ,RNA ,Ribosomal ,16S ,Rural Population ,antibiotic resistance ,metagenomics ,microbiome ,one health ,public health ,resistome ,Microbiology - Abstract
Low- and middle-income countries (LMICs) bear the largest mortality burden of antibiotic-resistant infections. Small-scale animal production and free-roaming domestic animals are common in many LMICs, yet data on zoonotic exchange of gut bacteria and antibiotic resistance genes (ARGs) in low-income communities are sparse. Differences between rural and urban communities with regard to population density, antibiotic use, and cohabitation with animals likely influence the frequency of transmission of gut bacterial communities and ARGs between humans and animals. Here, we determined the similarity in gut microbiomes, using 16S rRNA gene amplicon sequencing, and resistomes, using long-read metagenomics, between humans, chickens, and goats in a rural community compared to an urban community in Bangladesh. Gut microbiomes were more similar between humans and chickens in the rural (where cohabitation is more common) than the urban community, but there was no difference for humans and goats in the rural versus the urban community. Human and goat resistomes were more similar in the urban community, and ARG abundance was higher in urban animals than rural animals. We identified substantial overlap of ARG alleles in humans and animals in both settings. Humans and chickens had more overlapping ARG alleles than humans and goats. All fecal hosts from the urban community and rural humans carried ARGs on chromosomal contigs classified as potentially pathogenic bacteria, including Escherichia coli, Campylobacter jejuni, Clostridioides difficile, and Klebsiella pneumoniae. These findings provide insight into the breadth of ARGs circulating within human and animal populations in a rural compared to urban community in Bangladesh. IMPORTANCE While the development of antibiotic resistance in animal gut microbiomes and subsequent transmission to humans has been demonstrated in intensive farming environments and high-income countries, evidence of zoonotic exchange of antibiotic resistance in LMIC communities is lacking. This research provides genomic evidence of overlap of antibiotic resistance genes between humans and animals, especially in urban communities, and highlights chickens as important reservoirs of antibiotic resistance. Chicken and human gut microbiomes were more similar in rural Bangladesh, where cohabitation is more common. Incorporation of long-read metagenomics enabled characterization of bacterial hosts of resistance genes, which has not been possible in previous culture-independent studies using only short-read sequencing. These findings highlight the importance of developing strategies for combatting antibiotic resistance that account for chickens being reservoirs of ARGs in community environments, especially in urban areas.
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- 2022
13. Passive In-Line Chlorination for Drinking Water Disinfection: A Critical Review
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Lindmark, Megan, Cherukumilli, Katya, Crider, Yoshika S, Marcenac, Perrine, Lozier, Matthew, Voth-Gaeddert, Lee, Lantagne, Daniele S, Mihelcic, James R, Zhang, Qianjin Marina, Just, Craig, and Pickering, Amy J
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Prevention ,Rare Diseases ,Chlorine ,Disinfection ,Drinking Water ,Halogenation ,Water Purification ,Water Supply ,passive in-line chlorination ,drinking water treatment ,chlorine disinfection ,resource-constrained settings ,low- and middle-income countries ,safely managed water supply ,Environmental Sciences - Abstract
The world is not on track to meet Sustainable Development Goal 6.1 to provide universal access to safely managed drinking water by 2030. Removal of priority microbial contaminants by disinfection is one aspect of ensuring water is safely managed. Passive chlorination (also called in-line chlorination) represents one approach to disinfecting drinking water before or at the point of collection (POC), without requiring daily user input or electricity. In contrast to manual household chlorination methods typically implemented at the point of use (POU), passive chlorinators can reduce the user burden for chlorine dosing and enable treatment at scales ranging from communities to small municipalities. In this review, we synthesized evidence from 27 evaluations of passive chlorinators (in 19 articles, 3 NGO reports, and 5 theses) conducted across 16 countries in communities, schools, health care facilities, and refugee camps. Of the 27 passive chlorinators we identified, the majority (22/27) were solid tablet or granular chlorine dosers, and the remaining devices were liquid chlorine dosers. We identified the following research priorities to address existing barriers to scaled deployment of passive chlorinators: (i) strengthening local chlorine supply chains through decentralized liquid chlorine production, (ii) validating context-specific business models and financial sustainability, (iii) leveraging remote monitoring and sensing tools to monitor real-time chlorine levels and potential system failures, and (iv) designing handpump-compatible passive chlorinators to serve the many communities reliant on handpumps as a primary drinking water source. We also propose a set of reporting indicators for future studies to facilitate standardized evaluations of the technical performance and financial sustainability of passive chlorinators. In addition, we discuss the limitations of chlorine-based disinfection and recognize the importance of addressing chemical contamination in drinking water supplies. Passive chlorinators deployed and managed at-scale have the potential to elevate the quality of existing accessible and available water services to meet "safely managed" requirements.
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- 2022
14. Elevated Fecal Mitochondrial DNA from Symptomatic Norovirus Infections Suggests Potential Health Relevance of Human Mitochondrial DNA in Fecal Source Tracking
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Zhu, Kevin J, Suttner, Brittany, Knee, Jackie, Capone, Drew, Moe, Christine L, Stauber, Christine E, Konstantinidis, Kostas T, Wallach, Thomas E, Pickering, Amy J, and Brown, Joe
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Genetics ,Infectious Diseases ,Foodborne Illness ,Digestive Diseases ,Clinical Research ,fecal source tracking ,human mtDNA ,enteric infection ,diarrhea ,biomarker of gastrointestinal inflammation ,Environmental Science and Management ,Environmental Engineering ,Environmental Biotechnology - Abstract
An end goal of fecal source tracking (FST) is to provide information on risk of transmission of waterborne illnesses associated with fecal contamination. Ideally, concentrations of FST markers in ambient waters would reflect exposure risk. Human mtDNA is an FST marker that is exclusively human in origin and may be elevated in feces of individuals experiencing gastrointestinal inflammation. In this study, we examined whether human mtDNA is elevated in fecal samples from individuals with symptomatic norovirus infections using samples from the United States (US), Mozambique, and Bangladesh. We quantified hCYTB484 (human mtDNA) and HF183/BacR287 (human-associated Bacteroides) FST markers using droplet digital polymerase chain reaction. We observed the greatest difference in concentrations of hCYTB484 when comparing samples from individuals with symptomatic norovirus infections versus individuals without norovirus infections or diarrhea symptoms: log10 increase of 1.42 in US samples (3,820% increase, p-value = 0.062), 0.49 in Mozambique (308% increase, p-value = 0.061), and 0.86 in Bangladesh (648% increase, p-value = 0.035). We did not observe any trends in concentrations of HF183/BacR287 in the same samples. These results suggest concentrations of fecal mtDNA may increase during symptomatic norovirus infection and that mtDNA in environmental samples may represent an unambiguously human source-tracking marker that correlates with enteric pathogen exposure risk.
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- 2022
15. Drinking water chlorination has minor effects on the intestinal flora and resistomes of Bangladeshi children
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Nadimpalli, Maya L, Lanza, Val F, Montealegre, Maria Camila, Sultana, Sonia, Fuhrmeister, Erica R, Worby, Colin J, Teichmann, Lisa, Caduff, Lea, Swarthout, Jenna M, Crider, Yoshika S, Earl, Ashlee M, Brown, Joe, Luby, Stephen P, Islam, Mohammad Aminul, Julian, Timothy R, and Pickering, Amy J
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Clinical Research ,Digestive Diseases ,Infectious Diseases ,Pediatric ,Infection ,Oral and gastrointestinal ,Good Health and Well Being ,Clean Water and Sanitation ,Bangladesh ,Child ,Diarrhea ,Drinking Water ,Gastrointestinal Microbiome ,Halogenation ,Humans ,Water Purification ,Microbiology ,Medical Microbiology - Abstract
Healthy development of the gut microbiome provides long-term health benefits. Children raised in countries with high infectious disease burdens are frequently exposed to diarrhoeal pathogens and antibiotics, which perturb gut microbiome assembly. A recent cluster-randomized trial leveraging >4,000 child observations in Dhaka, Bangladesh, found that automated water chlorination of shared taps effectively reduced child diarrhoea and antibiotic use. In this substudy, we leveraged stool samples collected from 130 children 1 year after chlorine doser installation to examine differences between treatment and control children's gut microbiota. Water chlorination was associated with increased abundance of several bacterial genera previously linked to improved gut health; however, we observed no effects on the overall richness or diversity of taxa. Several clinically relevant antibiotic resistance genes were relatively more abundant in the gut microbiome of treatment children, possibly due to increases in Enterobacteriaceae. While further studies on the long-term health impacts of drinking chlorinated water would be valuable, we conclude that access to chlorinated water did not substantially impact child gut microbiome development in this setting, supporting the use of chlorination to increase global access to safe drinking water.
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- 2022
16. Leveraging the COVID-19 pandemic as a natural experiment to assess changes in antibiotic use and antibiotic-resistant E. coli carriage in semi-rural Ecuador
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Amato, Heather K., Loayza, Fernanda, Salinas, Liseth, Paredes, Diana, García, Daniela, Sarzosa, Soledad, Saraiva-Garcia, Carlos, Johnson, Timothy J., Pickering, Amy J., Riley, Lee W., Trueba, Gabriel, and Graham, Jay P.
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- 2023
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17. Evaluation of an on-site sanitation intervention against childhood diarrhea and acute respiratory infection 1 to 3.5 years after implementation: Extended follow-up of a cluster-randomized controlled trial in rural Bangladesh
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Contreras, Jesse D, Islam, Mahfuza, Mertens, Andrew, Pickering, Amy J, Arnold, Benjamin F, Benjamin-Chung, Jade, Hubbard, Alan E, Rahman, Mahbubur, Unicomb, Leanne, Luby, Stephen P, Colford, John M, and Ercumen, Ayse
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Biomedical and Clinical Sciences ,Health Services and Systems ,Public Health ,Clinical Sciences ,Health Sciences ,Clinical Trials and Supportive Activities ,Pediatric ,Prevention ,Clinical Research ,Prevention of disease and conditions ,and promotion of well-being ,3.1 Primary prevention interventions to modify behaviours or promote wellbeing ,Clean Water and Sanitation ,Animals ,Bangladesh ,Diarrhea ,Follow-Up Studies ,Hand Disinfection ,Humans ,Respiratory Tract Infections ,Rural Population ,Sanitation ,Medical and Health Sciences ,General & Internal Medicine ,Biomedical and clinical sciences ,Health sciences - Abstract
BackgroundDiarrhea and acute respiratory infection (ARI) are leading causes of death in children. The WASH Benefits Bangladesh trial implemented a multicomponent sanitation intervention that led to a 39% reduction in the prevalence of diarrhea among children and a 25% reduction for ARI, measured 1 to 2 years after intervention implementation. We measured longer-term intervention effects on these outcomes between 1 to 3.5 years after intervention implementation, including periods with differing intensity of behavioral promotion.Methods and findingsWASH Benefits Bangladesh was a cluster-randomized controlled trial of water, sanitation, hygiene, and nutrition interventions (NCT01590095). The sanitation intervention included provision of or upgrades to improved latrines, sani-scoops for feces removal, children's potties, and in-person behavioral promotion. Promotion was intensive up to 2 years after intervention initiation, decreased in intensity between years 2 to 3, and stopped after 3 years. Access to and reported use of latrines was high in both arms, and latrine quality was significantly improved by the intervention, while use of child feces management tools was low. We enrolled a random subset of households from the sanitation and control arms into a longitudinal substudy, which measured child health with quarterly visits between 1 to 3.5 years after intervention implementation. The study period therefore included approximately 1 year of high-intensity promotion, 1 year of low-intensity promotion, and 6 months with no promotion. We assessed intervention effects on diarrhea and ARI prevalence among children
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- 2022
18. Characteristics that modify the effect of small-quantity lipid-based nutrient supplementation on child growth: an individual participant data meta-analysis of randomized controlled trials.
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Dewey, Kathryn G, Wessells, K Ryan, Arnold, Charles D, Prado, Elizabeth L, Abbeddou, Souheila, Adu-Afarwuah, Seth, Ali, Hasmot, Arnold, Benjamin F, Ashorn, Per, Ashorn, Ulla, Ashraf, Sania, Becquey, Elodie, Bendabenda, Jaden, Brown, Kenneth H, Christian, Parul, Colford, John M, Dulience, Sherlie JL, Fernald, Lia CH, Galasso, Emanuela, Hallamaa, Lotta, Hess, Sonja Y, Humphrey, Jean H, Huybregts, Lieven, Iannotti, Lora L, Jannat, Kaniz, Lartey, Anna, Le Port, Agnes, Leroy, Jef L, Luby, Stephen P, Maleta, Kenneth, Matias, Susana L, Mbuya, Mduduzi NN, Mridha, Malay K, Nkhoma, Minyanga, Null, Clair, Paul, Rina R, Okronipa, Harriet, Ouédraogo, Jean-Bosco, Pickering, Amy J, Prendergast, Andrew J, Ruel, Marie, Shaikh, Saijuddin, Weber, Ann M, Wolff, Patricia, Zongrone, Amanda, and Stewart, Christine P
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Humans ,Child Nutrition Disorders ,Lipids ,Child Development ,Nutritional Status ,Dietary Supplements ,Child ,Preschool ,Infant ,Africa South of the Sahara ,Haiti ,Bangladesh ,Female ,Male ,Randomized Controlled Trials as Topic ,Infant Nutritional Physiological Phenomena ,Effect Modifier ,Epidemiologic ,child undernutrition ,complementary feeding ,home fortification ,nutrient supplements ,stunting ,wasting ,Clinical Trials and Supportive Activities ,Clinical Research ,Nutrition ,Pediatric ,Prevention ,Zero Hunger ,Good Health and Well Being ,Engineering ,Medical and Health Sciences ,Nutrition & Dietetics - Abstract
BackgroundMeta-analyses show that small-quantity lipid-based nutrient supplements (SQ-LNSs) reduce child stunting and wasting. Identification of subgroups who benefit most from SQ-LNSs may facilitate program design.ObjectivesWe aimed to identify study-level and individual-level modifiers of the effect of SQ-LNSs on child growth outcomes.MethodsWe conducted a 2-stage meta-analysis of individual participant data from 14 randomized controlled trials of SQ-LNSs provided to children 6-24 mo of age (n = 37,066). We generated study-specific and subgroup estimates of SQ-LNS compared with control and pooled the estimates using fixed-effects models. We used random-effects meta-regression to examine study-level effect modifiers. In sensitivity analyses, we examined whether results differed depending on study arm inclusion criteria and types of comparisons.ResultsSQ-LNS provision decreased stunting (length-for-age z score < -2) by 12% (relative reduction), wasting [weight-for-length (WLZ) z score < -2] by 14%, low midupper arm circumference (MUAC) (
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- 2021
19. Small-quantity lipid-based nutrient supplements for children age 6-24 months: a systematic review and individual participant data meta-analysis of effects on developmental outcomes and effect modifiers.
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Prado, Elizabeth L, Arnold, Charles D, Wessells, K Ryan, Stewart, Christine P, Abbeddou, Souheila, Adu-Afarwuah, Seth, Arnold, Benjamin F, Ashorn, Ulla, Ashorn, Per, Becquey, Elodie, Brown, Kenneth H, Chandna, Jaya, Christian, Parul, Dentz, Holly N, Dulience, Sherlie JL, Fernald, Lia CH, Galasso, Emanuela, Hallamaa, Lotta, Hess, Sonja Y, Huybregts, Lieven, Iannotti, Lora L, Jimenez, Elizabeth Y, Kohl, Patricia, Lartey, Anna, Le Port, Agnes, Luby, Stephen P, Maleta, Kenneth, Matchado, Andrew, Matias, Susana L, Mridha, Malay K, Ntozini, Robert, Null, Clair, Ocansey, Maku E, Parvez, Sarker M, Phuka, John, Pickering, Amy J, Prendergast, Andrew J, Shamim, Abu A, Siddiqui, Zakia, Tofail, Fahmida, Weber, Ann M, Wu, Lee SF, and Dewey, Kathryn G
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Humans ,Lipids ,Child Development ,Language Development ,Motor Skills ,Socioeconomic Factors ,Dietary Supplements ,Child ,Preschool ,Infant ,Africa South of the Sahara ,Haiti ,Bangladesh ,Female ,Male ,Randomized Controlled Trials as Topic ,Infant Nutritional Physiological Phenomena ,Effect Modifier ,Epidemiologic ,child undernutrition ,complementary feeding ,executive function ,language development ,motor development ,nutrient supplements ,social-emotional development ,Pediatric ,Clinical Research ,Clinical Trials and Supportive Activities ,Zero Hunger ,Engineering ,Medical and Health Sciences ,Nutrition & Dietetics - Abstract
BackgroundSmall-quantity (SQ) lipid-based nutrient supplements (LNSs) provide many nutrients needed for brain development.ObjectivesWe aimed to generate pooled estimates of the effect of SQ-LNSs on developmental outcomes (language, social-emotional, motor, and executive function), and to identify study-level and individual-level modifiers of these effects.MethodsWe conducted a 2-stage meta-analysis of individual participant data from 14 intervention against control group comparisons in 13 randomized trials of SQ-LNSs provided to children age 6-24 mo (total n = 30,024).ResultsIn 11-13 intervention against control group comparisons (n = 23,588-24,561), SQ-LNSs increased mean language (mean difference: 0.07 SD; 95% CI: 0.04, 0.10 SD), social-emotional (0.08; 0.05, 0.11 SD), and motor scores (0.08; 95% CI: 0.05, 0.11 SD) and reduced the prevalence of children in the lowest decile of these scores by 16% (prevalence ratio: 0.84; 95% CI: 0.76, 0.92), 19% (0.81; 95% CI: 0.74, 0.89), and 16% (0.84; 95% CI: 0.76, 0.92), respectively. SQ-LNSs also increased the prevalence of children walking without support at 12 mo by 9% (1.09; 95% CI: 1.05, 1.14). Effects of SQ-LNSs on language, social-emotional, and motor outcomes were larger among study populations with a higher stunting burden (≥35%) (mean difference: 0.11-0.13 SD; 8-9 comparisons). At the individual level, greater effects of SQ-LNSs were found on language among children who were acutely malnourished (mean difference: 0.31) at baseline; on language (0.12), motor (0.11), and executive function (0.06) among children in households with lower socioeconomic status; and on motor development among later-born children (0.11), children of older mothers (0.10), and children of mothers with lower education (0.11).ConclusionsChild SQ-LNSs can be expected to result in modest developmental gains, which would be analogous to 1-1.5 IQ points on an IQ test, particularly in populations with a high child stunting burden. Certain groups of children who experience higher-risk environments have greater potential to benefit from SQ-LNSs in developmental outcomes.This trial was registered at www.crd.york.ac.uk/PROSPERO as CRD42020159971.
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- 2021
20. Characteristics that modify the effect of small-quantity lipid-based nutrient supplementation on child anemia and micronutrient status: an individual participant data meta-analysis of randomized controlled trials.
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Wessells, K Ryan, Arnold, Charles D, Stewart, Christine P, Prado, Elizabeth L, Abbeddou, Souheila, Adu-Afarwuah, Seth, Arnold, Benjamin F, Ashorn, Per, Ashorn, Ulla, Becquey, Elodie, Brown, Kenneth H, Byrd, Kendra A, Campbell, Rebecca K, Christian, Parul, Fernald, Lia CH, Fan, Yue-Mei, Galasso, Emanuela, Hess, Sonja Y, Huybregts, Lieven, Jorgensen, Josh M, Kiprotich, Marion, Kortekangas, Emma, Lartey, Anna, Le Port, Agnes, Leroy, Jef L, Lin, Audrie, Maleta, Kenneth, Matias, Susana L, Mbuya, Mduduzi NN, Mridha, Malay K, Mutasa, Kuda, Naser, Abu M, Paul, Rina R, Okronipa, Harriet, Ouédraogo, Jean-Bosco, Pickering, Amy J, Rahman, Mahbubur, Schulze, Kerry, Smith, Laura E, Weber, Ann M, Zongrone, Amanda, and Dewey, Kathryn G
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Humans ,Anemia ,Anemia ,Iron-Deficiency ,Lipids ,Micronutrients ,Nutritional Status ,Dietary Supplements ,Child ,Preschool ,Infant ,Africa South of the Sahara ,Bangladesh ,Female ,Male ,Randomized Controlled Trials as Topic ,Infant Nutritional Physiological Phenomena ,Effect Modifier ,Epidemiologic ,anemia ,child undernutrition ,complementary feeding ,home fortification ,iron deficiency ,micronutrient status ,nutrient supplements ,Pediatric ,Clinical Research ,Clinical Trials and Supportive Activities ,Nutrition ,Prevention ,Hematology ,3.3 Nutrition and chemoprevention ,Prevention of disease and conditions ,and promotion of well-being ,Zero Hunger ,Engineering ,Medical and Health Sciences ,Nutrition & Dietetics - Abstract
BackgroundSmall-quantity lipid-based nutrient supplements (SQ-LNSs) have been shown to reduce the prevalence of child anemia and iron deficiency, but effects on other micronutrients are less well known. Identifying subgroups who benefit most from SQ-LNSs could support improved program design.ObjectivesWe aimed to identify study-level and individual-level modifiers of the effect of SQ-LNSs on child hemoglobin (Hb), anemia, and inflammation-adjusted micronutrient status outcomes.MethodsWe conducted a 2-stage meta-analysis of individual participant data from 13 randomized controlled trials of SQ-LNSs provided to children 6-24 mo of age (n = 15,946). We generated study-specific and subgroup estimates of SQ-LNSs compared with control, and pooled the estimates using fixed-effects models. We used random-effects meta-regression to examine potential study-level effect modifiers.ResultsSQ-LNS provision decreased the prevalence of anemia (Hb < 110 g/L) by 16% (relative reduction), iron deficiency (plasma ferritin < 12 µg/L) by 56%, and iron deficiency anemia (IDA; Hb < 110 g/L and plasma ferritin 12 mo and provided 9 (as opposed to
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- 2021
21. Social Desirability Bias in a Randomized Controlled Trial That Included Breastfeeding Promotion in Western Kenya
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Stewart, Christine P, Arnold, Charles D, Williams, Anne M, Arnold, Benjamin F, Pickering, Amy J, Dentz, Holly, Kiprotich, Marion, Lin, Audrie, Null, Clair, Colford, John M, Jr., and Dewey, Kathryn G
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- 2024
- Full Text
- View/download PDF
22. Longitudinal Effects of a Sanitation Intervention on Environmental Fecal Contamination in a Cluster-Randomized Controlled Trial in Rural Bangladesh
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Contreras, Jesse D, Islam, Mahfuza, Mertens, Andrew, Pickering, Amy J, Kwong, Laura H, Arnold, Benjamin F, Benjamin-Chung, Jade, Hubbard, Alan E, Alam, Mahfuja, Sen, Debashis, Islam, Sharmin, Rahman, Mahbubur, Unicomb, Leanne, Luby, Stephen P, Colford, John M, and Ercumen, Ayse
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Clinical Research ,Pediatric ,Clinical Trials and Supportive Activities ,Prevention ,Clean Water and Sanitation ,Animals ,Bangladesh ,Child ,Escherichia coli ,Feces ,Humans ,Rural Population ,Sanitation ,Toilet Facilities ,latrine ,potty ,child feces management ,WASH ,fecal indicator bacteria ,E. coli ,disease transmission pathways ,environmental sampling ,Environmental Sciences - Abstract
Household latrine access generally is not associated with reduced fecal contamination in the environment, but its long-term effectiveness has not been measured. We conducted an environmental assessment nested within the WASH Benefits Bangladesh randomized controlled trial (NCT01590095). We quantified E. coli and fecal coliforms in samples of stored drinking water, child hands, mother hands, soil, and food among a random sample of households from the sanitation and control arms of the trial. Samples were collected during eight quarterly visits approximately 1-3.5 years after intervention initiation. Overall, there were no substantial differences in environmental fecal contamination between households enrolled in the sanitation and control arms. Statistically significant reductions were found in stored water and child hands after pooling across sampling rounds, but the effects were small and not consistent across rounds. In addition, we assessed potential effect modification of intervention effects by follow-up time, season, wealth, community-level latrine density and coverage, population density, and domestic animal ownership. While the intervention had statistically significant effects within some subgroups, there were no consistent patterns of effect modification. Our findings support a growing consensus that on-site latrines are insufficient to prevent fecal contamination in the rural household environment.
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- 2021
23. Household finished flooring and soil-transmitted helminth and Giardia infections among children in rural Bangladesh and Kenya: a prospective cohort study
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Benjamin-Chung, Jade, Crider, Yoshika S, Mertens, Andrew, Ercumen, Ayse, Pickering, Amy J, Lin, Audrie, Steinbaum, Lauren, Swarthout, Jenna, Rahman, Mahbubur, Parvez, Sarker M, Haque, Rashidul, Njenga, Sammy M, Kihara, Jimmy, Null, Clair, Luby, Stephen P, Colford, John M, and Arnold, Benjamin F
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Clinical Research ,Digestive Diseases ,Infection ,Good Health and Well Being ,Adolescent ,Bangladesh ,Child ,Child ,Preschool ,Developing Countries ,Enzyme-Linked Immunosorbent Assay ,Feces ,Female ,Floors and Floorcoverings ,Giardiasis ,Helminthiasis ,Housing ,Humans ,Kenya ,Male ,Prevalence ,Prospective Studies ,Real-Time Polymerase Chain Reaction ,Rural Population ,Soil ,Microbiology ,Public Health and Health Services - Abstract
BackgroundSoil-transmitted helminths and Giardia duodenalis are responsible for a large burden of disease globally. In low-resource settings, household finished floors (eg, concrete floors) might reduce transmission of soil-transmitted helminths and G duodenalis.MethodsIn a prospective cohort of children nested within two randomised trials in rural Bangladesh and Kenya, we estimated associations between household finished flooring and soil-transmitted helminths and G duodenalis prevalence. In 2015-16, we collected stool samples from children aged 2-16 years in rural Bangladesh and Kenya. We detected soil-transmitted helminth infection using quantitative PCR (qPCR; Bangladesh n=2800; Kenya n=3094), and G duodenalis using qPCR in Bangladesh (n=6894) and ELISA in Kenya (n=8899). We estimated adjusted prevalence ratios (aPRs) using log-linear models adjusted for potential confounders.Findings7187 (92·2%) of 7795 children in Bangladesh and 9077 (93·7%) of 9686 children in Kenya provided stool specimens that were analysed by qPCR. At enrolment, 691 (10%) households in Bangladesh and 471 (5%) households in Kenya had finished floors. In both countries, household finished flooring was associated with lower Ascaris lumbricoides prevalence (Bangladesh aPR 0·33, 95% CI 0·14-0·78; Kenya 0·62, 0·39-0·98) and any soil-transmitted helminths (Bangladesh 0·73, 0·52-1·01; Kenya 0·57, 0·37-0·88). Household finished floors were also associated with lower Necator americanus prevalence in Bangladesh (0·52, 0·29-0·94) and G duodenalis prevalence in both countries (Bangladesh 0·78, 0·64-0·95; Kenya 0·82, 0·70-0·97).InterpretationIn low-resource settings, living in households with finished floors over a 2-year period was associated with lower prevalence of G duodenalis and some soil-transmitted helminths in children.FundingBill & Melinda Gates Foundation and Task Force for Global Health.
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- 2021
24. Longitudinal Monitoring of SARS-CoV‑2 RNA on High-Touch Surfaces in a Community Setting
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Harvey, Abigail P, Fuhrmeister, Erica R, Cantrell, Molly E, Pitol, Ana K, Swarthout, Jenna M, Powers, Julie E, Nadimpalli, Maya L, Julian, Timothy R, and Pickering, Amy J
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Climate Change Impacts and Adaptation ,Environmental Sciences ,Prevention ,Infectious Diseases ,Emerging Infectious Diseases ,Vaccine Related ,Biodefense ,Lung ,Infection ,Good Health and Well Being ,Environmental Science and Management ,Environmental Engineering ,Environmental Biotechnology ,Chemical engineering ,Pollution and contamination - Abstract
Environmental surveillance of surface contamination is an unexplored tool for understanding transmission of SARS-CoV-2 in community settings. We conducted longitudinal swab sampling of high-touch non-porous surfaces in a Massachusetts town during a COVID-19 outbreak from April to June 2020. Twenty-nine of 348 (8.3%) surface samples were positive for SARS-CoV-2 RNA, including crosswalk buttons, trash can handles, and door handles of essential business entrances (grocery store, liquor store, bank, and gas station). The estimated risk of infection from touching a contaminated surface was low (less than 5 in 10,000) by quantitative microbial risk assessment, suggesting fomites play a minimal role in SARS-CoV-2 community transmission. The weekly percentage of positive samples (out of n = 33 unique surfaces per week) best predicted variation in city-level COVID-19 cases with a 7-day lead time. Environmental surveillance of SARS-CoV-2 RNA on high-touch surfaces may be a useful tool to provide early warning of COVID-19 case trends.
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- 2021
25. Soil ingestion among young children in rural Bangladesh.
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Kwong, Laura H, Ercumen, Ayse, Pickering, Amy J, Unicomb, Leanne, Davis, Jennifer, Leckie, James O, and Luby, Stephen P
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Mouth ,Humans ,Soil ,Environmental Exposure ,Eating ,Child ,Child ,Preschool ,Infant ,Bangladesh ,Dust ,Extraction efficiency ,Geophagia ,Pediatric ,Chemical Sciences ,Environmental Sciences ,Medical and Health Sciences ,Epidemiology - Abstract
Ingestion of soil and dust is a pathway of children's exposure to several environmental contaminants, including lead, pesticides, and fecal contamination. Empirically based estimates of central tendency for soil consumption by children in high-income countries range from 9 to 135 dry mg/day. Using a Monte Carlo simulation, we modeled the mass of soil directly and indirectly ingested per day by rural Bangladeshi children and identified the parameters that influence the mass ingested. We combined data from observations of direct and indirect ingestion among children with measurements of soil mass on the children's hands, mother's hands, and objects to quantify soil ingestion/day. Estimated geometric mean soil ingestion was 162 dry mg/day for children 3-5 months, 224 dry mg/day for children 6-11 months, 234 dry mg/day for children 12-23 months, 168 dry mg/day for children 24-35 months, and 178 dry mg/day for children 36-47 months old. Across all age groups, children placing their hands in their mouths accounted for 46-78% of total ingestion and mouthing objects contributed 8-12%. Direct ingestion of soil accounted for nearly 40% of soil ingested among children 6-23 months old. Sensitivity analyses identified that the parameters most affecting the estimates were the load of soil on the child's hand, the frequency of hand-to-mouth contacts while not eating, and, for children 6-23 months old, the frequency of direct soil ingestion. In a rural, low-income setting, children's soil consumption was substantially more than the estimates for children in high-income countries. Further characterizing soil ingestion of children in low-income contexts would improve assessments of the risks they face from soil-associated contaminants.
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- 2021
26. Combating Antimicrobial Resistance Through Student-Driven Research and Environmental Surveillance.
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Fuhrmeister, Erica R, Larson, Jennifer R, Kleinschmit, Adam J, Kirby, James E, Pickering, Amy J, and Bascom-Slack, Carol A
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CURE ,One Health ,antibiotic resistance ,antimicrobial resistance ,citizen science ,environmental surveillance ,science education ,Environmental Science and Management ,Soil Sciences ,Microbiology - Abstract
Emerging resistance to all classes of antimicrobials is one of the defining crises of the 21st century. Many advances in modern medicine, such as routine surgeries, are predicated on sustaining patients with antimicrobials during a period when their immune systems alone cannot clear infection. The development of new antimicrobials has not kept pace with the antimicrobial resistance (AR) threat. AR bacteria have been documented in various environments, such as drinking and surface water, food, sewage, and soil, yet surveillance and sampling has largely been from infected patients. The prevalence and diversity of AR bacteria in the environment, and the risks they pose to humans are not well understood. There is consensus that environmental surveillance is an important first step in forecasting and targeting efforts to prevent spread and transmission of AR microbes. However, efforts to date have been limited. The Prevalence of Antibiotic Resistance in the Environment (PARE) is a classroom-based project that engages students around the globe in systematic environmental AR surveillance with the goal of identifying areas where prevalence is high. The format of PARE, designed as short classroom research modules, lowers common barriers for institutional participation in course-based research. PARE brings real-world microbiology into the classroom by educating students about the pressing public health issue of AR, while empowering them to be partners in the solution. In turn, the PARE project provides impactful data to inform our understanding of the spread of AR in the environment through global real-time surveillance.
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- 2021
27. Can breastfeeding protect against antimicrobial resistance?
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Nadimpalli, Maya L, Bourke, Claire D, Robertson, Ruairi C, Delarocque-Astagneau, Elisabeth, Manges, Amee R, and Pickering, Amy J
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Milk ,Human ,Humans ,Drug Resistance ,Bacterial ,Breast Feeding ,Infant ,Newborn ,Female ,Male ,Gastrointestinal Microbiome ,Antimicrobial resistance ,Breastfeeding ,Child health ,Human milk ,Low- and middle-income countries ,Microbiome ,General & Internal Medicine ,Medical and Health Sciences - Abstract
BackgroundThe proportion of infections among young children that are antimicrobial-resistant is increasing across the globe. Newborns may be colonized with enteric antimicrobial-resistant pathogens early in life, which is a risk factor for infection-related morbidity and mortality. Breastfeeding is actively promoted worldwide for its beneficial impacts on newborn health and gut health. However, the role of breastfeeding and human milk components in mitigating young children's carriage of antimicrobial-resistant pathogens and antibiotic resistance genes has not been comprehensively explored.Main bodyHere, we review how the act of breastfeeding, early breastfeeding, and/or human milk components, such as the milk microbiota, secretory IgA, human milk oligosaccharides, antimicrobial peptides, and microRNA -bearing extracellular vesicles, could play a role in preventing the establishment of antimicrobial-resistant pathogens in young children's developing gut microbiomes. We describe findings from recent human studies that support this concept.ConclusionGiven the projected rise in global morbidity and mortality that will stem from antimicrobial-resistant infections, identifying behavioral or nutritional interventions that could decrease children's susceptibility to colonization with antimicrobial-resistant pathogens may be one strategy for protecting their health. We suggest that breastfeeding and human milk supplements deserve greater attention as potential preventive measures in the global effort to combat antimicrobial resistance, particularly in low- and middle-income settings.
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- 2020
28. Shared bacterial communities between soil, stored drinking water, and hands in rural Bangladeshi households
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Fuhrmeister, Erica R, Ercumen, Ayse, Grembi, Jessica A, Islam, Mahfuza, Pickering, Amy J, and Nelson, Kara L
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Pediatric ,2.2 Factors relating to the physical environment ,Aetiology ,Infection ,16S rRNA gene sequencing ,SourceTracker ,Low-and middle-income countries ,Pathogen transmission ,Fecal contamination - Abstract
Understanding household-level transmission pathways of fecal pathogens can provide insight for developing effective strategies to reduce diarrheal illness in low- and middle-income countries. We applied whole bacterial community analysis to investigate pathways of bacterial transmission in 50 rural Bangladeshi households. SourceTracker was used to quantify the shared microbial community in household reservoirs (stored drinking water, soil, and hands) and estimate the percentage of fecal-associated bacteria from child and mothers' feces in these reservoirs. Among the reservoirs studied, most bacterial transfer occurred between mothers' and children's hands and between mothers' hands and stored water. The relative percentage of human fecal-associated bacteria in all household reservoirs was low. We also quantified the number of identical amplicon sequence variants within and between individual households to assess bacterial community exchange in the domestic environment. Intra-household sharing of bacteria between mothers' and children's hands and between hands and soil was significantly greater than inter-household sharing.
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- 2020
29. Ingestion of Fecal Bacteria along Multiple Pathways by Young Children in Rural Bangladesh Participating in a Cluster-Randomized Trial of Water, Sanitation, and Hygiene Interventions (WASH Benefits)
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Kwong, Laura H, Ercumen, Ayse, Pickering, Amy J, Arsenault, Joanne E, Islam, Mahfuza, Parvez, Sarker M, Unicomb, Leanne, Rahman, Mahbubur, Davis, Jennifer, and Luby, Stephen P
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Digestive Diseases ,Nutrition ,Foodborne Illness ,Pediatric ,Clinical Research ,Clean Water and Sanitation ,Animals ,Bangladesh ,Child ,Child ,Preschool ,Eating ,Escherichia coli ,Feces ,Humans ,Hygiene ,Infant ,Rural Population ,Sanitation ,Water ,diarrhea ,environmental enteropathy ,fecal contamination ,E. coli ,multiple pathways ,child health ,exposure ,Environmental Sciences - Abstract
Quantifying the contribution of individual exposure pathways to a child's total ingestion of fecal matter could help prioritize interventions to reduce environmental enteropathy and diarrhea. This study used data on fecal contamination of drinking water, food, soil, hands, and objects and second-by-second data on children's contacts with these environmental reservoirs in rural Bangladesh to assess the relative contribution of different pathways to children's ingestion of fecal indicator bacteria and if ingestion decreased with the water, sanitation, and hygiene interventions implemented in the WASH Benefits Trial. Our model estimated that rural Bangladeshi children
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- 2020
30. Biosecurity and water, sanitation, and hygiene (WASH) interventions in animal agricultural settings for reducing infection burden, antibiotic use, and antibiotic resistance: a One Health systematic review
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Pinto Jimenez, Chris E, Keestra, Sarai, Tandon, Pranav, Cumming, Oliver, Pickering, Amy J, Moodley, Arshnee, and Chandler, Clare I R
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- 2023
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31. Measuring Environmental Exposure to Enteric Pathogens in Low-Income Settings: Review and Recommendations of an Interdisciplinary Working Group
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Goddard, Frederick GB, Ban, Radu, Barr, Dana Boyd, Brown, Joe, Cannon, Jennifer, Colford, John M, Eisenberg, Joseph NS, Ercumen, Ayse, Petach, Helen, Freeman, Matthew C, Levy, Karen, Luby, Stephen P, Moe, Christine, Pickering, Amy J, Sarnat, Jeremy A, Stewart, Jill, Thomas, Evan, Taniuchi, Mami, and Clasen, Thomas
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Foodborne Illness ,Prevention ,Infectious Diseases ,Pediatric ,2.2 Factors relating to the physical environment ,Aetiology ,Infection ,Good Health and Well Being ,Clean Water and Sanitation ,Child ,Child ,Preschool ,Environmental Exposure ,Feces ,Humans ,Hygiene ,Poverty ,Sanitation ,Environmental Sciences - Abstract
Infections with enteric pathogens impose a heavy disease burden, especially among young children in low-income countries. Recent findings from randomized controlled trials of water, sanitation, and hygiene interventions have raised questions about current methods for assessing environmental exposure to enteric pathogens. Approaches for estimating sources and doses of exposure suffer from a number of shortcomings, including reliance on imperfect indicators of fecal contamination instead of actual pathogens and estimating exposure indirectly from imprecise measurements of pathogens in the environment and human interaction therewith. These shortcomings limit the potential for effective surveillance of exposures, identification of important sources and modes of transmission, and evaluation of the effectiveness of interventions. In this review, we summarize current and emerging approaches used to characterize enteric pathogen hazards in different environmental media as well as human interaction with those media (external measures of exposure), and review methods that measure human infection with enteric pathogens as a proxy for past exposure (internal measures of exposure). We draw from lessons learned in other areas of environmental health to highlight how external and internal measures of exposure can be used to more comprehensively assess exposure. We conclude by recommending strategies for advancing enteric pathogen exposure assessments.
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- 2020
32. Wastewater-Based Epidemiology: Global Collaborative to Maximize Contributions in the Fight Against COVID-19
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Bivins, Aaron, North, Devin, Ahmad, Arslan, Ahmed, Warish, Alm, Eric, Been, Frederic, Bhattacharya, Prosun, Bijlsma, Lubertus, Boehm, Alexandria B, Brown, Joe, Buttiglieri, Gianluigi, Calabro, Vincenza, Carducci, Annalaura, Castiglioni, Sara, Gurol, Zeynep Cetecioglu, Chakraborty, Sudip, Costa, Federico, Curcio, Stefano, de los Reyes, Francis L, Vela, Jeseth Delgado, Farkas, Kata, Fernandez-Casi, Xavier, Gerba, Charles, Gerrity, Daniel, Girones, Rosina, Gonzalez, Raul, Haramoto, Eiji, Harris, Angela, Holden, Patricia A, Islam, Tahmidul, Jones, Davey L, Kasprzyk-Hordern, Barbara, Kitajima, Masaaki, Kotlarz, Nadine, Kumar, Manish, Kuroda, Keisuke, La Rosa, Giuseppina, Malpei, Francesca, Mautus, Mariana, McLellan, Sandra L, Medema, Gertjan, Meschke, John Scott, Mueller, Jochen, Newton, Ryan J, Nilsson, David, Noble, Rachel T, van Nuijs, Alexander, Peccia, Jordan, Perkins, T Alex, Pickering, Amy J, Rose, Joan, Sanchez, Gloria, Smith, Adam, Stadler, Lauren, Stauber, Christine, Thomas, Kevin, van der Voorn, Tom, Wigginton, Krista, Zhu, Kevin, and Bibby, Kyle
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Environmental Sciences - Published
- 2020
33. Household finished flooring and soil-transmitted helminth and Giardia infections among children in rural Bangladesh and Kenya: a prospective cohort study
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Benjamin-Chung, Jade, Crider, Yoshika S, Mertens, Andrew, Ercumen, Ayse, Pickering, Amy J, Lin, Audrie, Steinbaum, Lauren, Swarthout, Jenna, Rahman, Mahbubur, Parvez, Sarker M, Haque, Rashidul, Njenga, Sammy M, Kihara, Jimmy, Null, Clair, Luby, Stephen P, Colford, John M, and Arnold, Benjamin F
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Digestive Diseases ,Clinical Research - Abstract
AbstractBackgroundSoil-transmitted helminths (STH) and Giardia duodenalis are responsible for a large burden of disease globally. In low-resource settings, household finished floors (e.g., concrete floors) may reduce transmission of STH and G. duodenalis.MethodsIn a prospective cohort of children nested within two randomised trials in rural Bangladesh and Kenya, we estimated associations between household finished flooring and STH and G. duodenalis prevalence. In 2015-2016, we collected stool samples from children aged 2-16 years in rural Bangladesh and Kenya. We detected STH infection using qPCR (Bangladesh N=2,800; Kenya N=3,094) and detected G. duodenalis using qPCR in Bangladesh (N=6,894) and ELISA in Kenya (N=8,899). We estimated adjusted prevalence ratios (aPRs) using log-linear models adjusted for potential confounders.FindingsAt enrolment, 10% of households in Bangladesh and 5% in Kenya had finished floors. In both countries, household finished flooring was associated with lower Ascaris lumbricoides prevalence (Bangladesh aPR: 0.33, 95% CI 0.14, 0.78; Kenya aPR: 0.62, 95% CI 0.39, 0.98) and any STH (Bangladesh aPR: 0.73, 95% CI 0.52, 1.01; Kenya aPR: 0.57, 95% CI 0.37, 0.88). Household finished floors were also associated with lower Necator americanus prevalence in Bangladesh (aPR: 0.52, 95% CI 0.29, 0.94) and G. duodenalis prevalence in both countries (Bangladesh aPR: 0.78, 95% CI 0.64, 0.95; Kenya: aPR: 0.82, 95% CI 0.70, 0.97).InterpretationIn low-resource settings, living in households with finished floors over a two-year period was associated with lower prevalence of G. duodenalis and certain STH in children.FundingBill & Melinda Gates Foundation grant OPPGD759
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- 2020
34. Effects of Individual and Combined Water, Sanitation, Handwashing, and Nutritional Interventions on Child Respiratory Infections in Rural Kenya: A Cluster-Randomized Controlled Trial
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Swarthout, Jenna, Ram, Pavani K, Arnold, Charles D, Dentz, Holly N, Arnold, Benjamin F, Kalungu, Stephen, Lin, Audrie, Njenga, Sammy M, Stewart, Christine P, Colford, John M, Null, Clair, and Pickering, Amy J
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Biomedical and Clinical Sciences ,Public Health ,Health Sciences ,Clinical Trials and Supportive Activities ,Pediatric ,Clinical Research ,Nutrition ,Lung ,Infectious Diseases ,Prevention ,3.1 Primary prevention interventions to modify behaviours or promote wellbeing ,Prevention of disease and conditions ,and promotion of well-being ,Clean Water and Sanitation ,Adult ,Child ,Child Development ,Child Nutritional Physiological Phenomena ,Child ,Preschool ,Cluster Analysis ,Female ,Hand Disinfection ,Humans ,Kenya ,Male ,Nutritional Status ,Respiratory Tract Infections ,Sanitation ,Water Purification ,Water Quality ,Water Supply ,Young Adult ,Medical and Health Sciences ,Tropical Medicine ,Biomedical and clinical sciences ,Health sciences - Abstract
Poor nutrition and hand hygiene are risk factors for acute respiratory infections (ARIs). Safe drinking water and sanitation can reduce exposure to pathogens and encourage healthy immune responses, reducing the risk of ARIs. Within a trial assessing impacts of water, sanitation, and handwashing (WASH), and nutritional interventions, we evaluated effects on ARIs. The WASH Benefits cluster-randomized trial enrolled pregnant women from Kenyan villages and evaluated health outcomes in children born to enrolled mothers 1 and 2 years after intervention delivery. Geographically adjacent clusters were block-randomized into a passive control (no promotional visits), a double-sized active control (monthly visits to measure mid-upper arm circumference), and six intervention groups: chlorinated drinking water (W), improved sanitation (S), handwashing with soap (H), combined WSH, improved nutrition (N) through counseling and lipid-based nutrient supplementation (LNS), and combined WSHN. The main outcome was the prevalence of ARI symptoms (cough, panting, wheezing, or difficulty breathing) in children younger than 3 years. Masking participants was not possible. Analyses were intention-to-treat. Between November 2012 and May 2014, 702 clusters were enrolled, including 6,960 (year 1) and 7,088 (year 2) children with ARI data. The cluster-level intra-cluster correlation coefficient for ARIs was 0.026 across both years. Water, sanitation, and handwashing interventions with behavior change messaging did not reduce ARIs. Nutrition counseling and LNS modestly reduced ARI symptoms compared with controls in year 1 [prevalence ratio (PR): 0.87, 95% confidence interval (CI): 0.77-0.99], but no effect in the combined WSHN group weakens this finding.
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- 2020
35. Effect of Sanitation Improvements on Pathogens and Microbial Source Tracking Markers in the Rural Bangladeshi Household Environment
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Fuhrmeister, Erica R, Ercumen, Ayse, Pickering, Amy J, Jeanis, Kaitlyn M, Crider, Yoshika, Ahmed, Mahaa, Brown, Sara, Alam, Mahfuja, Sen, Debashis, Islam, Sharmin, Kabir, Mir Himayet, Islam, Mahfuza, Rahman, Mahbubur, Kwong, Laura H, Arnold, Benjamin F, Luby, Stephen P, Colford, John M, and Nelson, Kara L
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Clinical Research ,Clinical Trials and Supportive Activities ,Foodborne Illness ,Prevention ,Digestive Diseases ,Vaccine Related ,Pediatric ,Biodefense ,Emerging Infectious Diseases ,2.2 Factors relating to the physical environment ,Aetiology ,Infection ,Clean Water and Sanitation ,Animals ,Child ,Escherichia coli ,Family Characteristics ,Feces ,Humans ,Sanitation ,Toilet Facilities ,Environmental Sciences - Abstract
Diarrheal illnesses from enteric pathogens are a leading cause of death in children under five in low- and middle-income countries (LMICs). Sanitation is one way to reduce the spread of enteric pathogens in the environment; however, few studies have investigated the effectiveness of sanitation in rural LMICs in reducing pathogens in the environment. In this study, we measured the impact of a sanitation intervention (dual-pit latrines, sani-scoops, child potties delivered as part of a randomized control trial, WASH Benefits) in rural Bangladeshi household compounds by assessing prevalence ratios, differences, and changes in the concentration of pathogen genes and host-specific fecal markers. We found no difference in the prevalence of pathogenic Escherichia coli, norovirus, or Giardia genes in the domestic environment in the sanitation and control arms. The prevalence of the human fecal marker was lower on child hands and the concentration of animal fecal marker was lower on mother hands in the sanitation arm in adjusted models, but these associations were not significant after correcting for multiple comparisons. In the subset of households with ≥10 individuals per compound, the prevalence of enterotoxigenic E. coli genes on child hands was lower in the sanitation arm. Incomplete removal of child and animal feces or the compound (versus community-wide) scale of intervention could explain the limited impacts of improved sanitation.
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- 2020
36. Associations between enteric pathogen carriage and height-for-age, weight-for-age and weight-for-height in children under 5 years old in urban Dhaka, Bangladesh.
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Berendes, David, Capone, Drew, Knee, Jackie, Holcomb, David, Sultana, Sonia, Pickering, Amy J, and Brown, Joe
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Feces ,Animals ,Humans ,Parasites ,Bacteria ,Communicable Diseases ,Gastrointestinal Diseases ,Body Weight ,Anthropometry ,Body Height ,Prevalence ,Cross-Sectional Studies ,Developmental Disabilities ,Carrier State ,Child ,Preschool ,Infant ,Infant ,Newborn ,Urban Population ,Bangladesh ,Female ,Male ,Diarrhoea ,Giardia ,enteric infection ,stunting ,Epidemiology ,Public Health and Health Services - Abstract
Nutritional factors and infectious agents may contribute to paediatric growth deficits in low- and middle-income countries; however, the contribution of enteric pathogens is only beginning to be understood. We analysed the stool from children
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- 2020
37. Correction to Predictors of Enteric Pathogens in the Domestic Environment from Human and Animal Sources in Rural Bangladesh
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Fuhrmeister, Erica R, Ercumen, Ayse, Pickering, Amy J, Jeanis, Kaitlyn M, Ahmed, Mahaa, Brown, Sara, Arnold, Benjamin F, Hubbard, Alan E, Alam, Mahfuja, Sen, Debashis, Islam, Sharmin, Kabir, Mir Himayet, Kwong, Laura H, Islam, Mahfuza, Unicomb, Leanne, Rahman, Mahbubur, Boehm, Alexandria B, Luby, Stephen P, Colford, John M, and Nelson, Kara L
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Environmental Sciences - Abstract
The authors identified an entry error in Table 1 of this manuscript.1 The number of samples below the limit of detection and limit of quantification for BacCow were switched for mother and child hands. This has been updated in the corrected Table 1 below. The results, conclusions, and discussion are not affected by this correction.
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- 2020
38. Association between Malaria Infection and Early Childhood Development Mediated by Anemia in Rural Kenya.
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Milner, Erin M, Kariger, Patricia, Pickering, Amy J, Stewart, Christine P, Byrd, Kendra, Lin, Audrie, Rao, Gouthami, Achando, Beryl, Dentz, Holly N, Null, Clair, and Fernald, Lia CH
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Humans ,Malaria ,Anemia ,Child Development ,Developmental Disabilities ,Child ,Preschool ,Infant ,Rural Population ,Kenya ,Female ,Male ,anemia ,early childhood development ,malaria ,rural Kenya ,Toxicology - Abstract
Malaria is a leading cause of morbidity and mortality among children under five years of age, with most cases occurring in Sub-Saharan Africa. Children in this age group in Africa are at greatest risk worldwide for developmental deficits. There are research gaps in quantifying the risks of mild malaria cases, understanding the pathways linking malaria infection and poor child development, and evaluating the impact of malaria on the development of children under five years. We analyzed the association between malaria infection and gross motor, communication, and personal social development in 592 children age 24 months in rural, western Kenya as part of the WASH Benefits environmental enteric dysfunction sub-study. Eighteen percent of children had malaria, 20% were at risk for gross motor delay, 21% were at risk for communication delay, and 23% were at risk for personal social delay. Having a positive malaria test was associated with increased risk for gross motor, communication, and personal social delay while adjusting for child characteristics, household demographics, study cluster, and intervention treatment arm. Mediation analyses suggested that anemia was a significant mediator in the pathway between malaria infection and risk for gross motor, communication, and personal social development delays. The proportion of the total effect of malaria on the risk of developmental delay that is mediated by anemia across the subscales was small (ranging from 9% of the effect on gross motor development to 16% of the effect on communication development mediated by anemia). Overall, malaria may be associated with short-term developmental delays during a vulnerable period of early life. Therefore, preventative malaria measures and immediate treatment are imperative for children's optimal development, particularly in light of projections of continued high malaria transmission in Kenya and Africa.
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- 2020
39. Ruminant Fecal Contamination of Drinking Water Introduced Post-Collection in Rural Kenyan Households
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Hamzah, Latifah, Boehm, Alexandria B, Davis, Jennifer, Pickering, Amy J, Wolfe, Marlene, Mureithi, Maryanne, and Harris, Angela
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Clinical Research ,Animals ,Cattle ,Drinking Water ,Enterococcus ,Escherichia coli ,Feces ,Goats ,Kenya ,Livestock ,Sheep ,fecal bacteria ,fuzzy set qualitative comparative analysis ,microbial source tracking ,ruminant contamination ,source water ,stored water ,Toxicology - Abstract
In sub-Saharan Africa, many families travel to collect water and store it in their homes for daily use, presenting an opportunity for the introduction of fecal contamination. One stored and one source water sample were each collected from 45 households in rural Kenya. All 90 samples were analyzed for fecal indicator bacteria (E. coli and enterococci) and species-specific contamination using molecular microbial source tracking assays. Human (HF183), avian (GFD), and ruminant (BacR) contamination were detected in 52, two, and four samples, respectively. Stored water samples had elevated enterococci concentrations (p < 0.01, Wilcoxon matched pairs test) and more frequent BacR detection (89% versus 27%, p < 0.01, McNemar's exact test) relative to source water samples. fsQCA (fuzzy set qualitative comparative analysis) was conducted on the subset of households with no source water BacR contamination to highlight combinations of factors associated with the introduction of BacR contamination to stored water supplies. Three combinations were identified: (i) ruminants in the compound, safe water extraction methods, and long storage time, (ii) ruminants, unsafe water extraction methods, and no soap at the household handwashing station, and (iii) long storage time and no soap. This suggests that multiple pathways contribute to the transmission of ruminant fecal contamination in this context, which would have been missed if data were analyzed using standard regression techniques.
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- 2020
40. Child defecation and feces management practices in rural Bangladesh: Associations with fecal contamination, observed hand cleanliness and child diarrhea
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Islam, Mahfuza, Rahman, Mahbubur, Unicomb, Leanne, Kafi, Mohammad Abdullah Heel, Rahman, Mostafizur, Alam, Mahfuja, Sen, Debashis, Islam, Sharmin, Pickering, Amy J, Hubbard, Alan E, Luby, Stephen P, Arnold, Benjamin F, Colford, John M, and Ercumen, Ayse
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Biomedical and Clinical Sciences ,Clinical Sciences ,Foodborne Illness ,Pediatric ,Clinical Research ,Bangladesh ,Child ,Child ,Preschool ,Defecation ,Diarrhea ,Drinking Water ,Feces ,Female ,Hand Hygiene ,Housing ,Humans ,Male ,Pregnancy ,Rural Population ,Sanitation ,Seasons ,Water Pollution ,General Science & Technology - Abstract
Child open defecation is common in low-income countries and can lead to fecal exposure in the domestic environment. We assessed associations between child feces management practices vs. measures of contamination and child diarrhea among households with children
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- 2020
41. Effect of an equipment-behavior change intervention on handwashing behavior among primary school children in Kenya: the Povu Poa school pilot study
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Wichaidit, Wit, Steinacher, Rachel, Okal, Jemima Akinyi, Whinnery, Jaynie, Null, Clair, Kordas, Katarzyna, Yu, Jihnhee, Pickering, Amy J, and Ram, Pavani K
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Public Health ,Health Sciences ,Clinical Research ,Clinical Trials and Supportive Activities ,Behavioral and Social Science ,Prevention ,Child ,Disgust ,Female ,Hand Disinfection ,Humans ,Kenya ,Male ,Pilot Projects ,Program Evaluation ,School Health Services ,Schools ,Soaps ,Social Norms ,Students ,Water Supply ,Behavioral intervention ,Compliance ,Hand hygiene ,Implementation research ,Soapy water ,Public Health and Health Services ,Epidemiology ,Health services and systems ,Public health - Abstract
BackgroundHandwashing prevalence in schools in Kenya is low due to lack of access to water and soap and lack of drive for handwashing. Soapy water made from detergent powder is an inexpensive alternative to bar soap and disgust and social norms change can be powerful drivers of handwashing, but their effectiveness has not been assessed in school setting. In Kenyan public schools, we evaluated an equipment-behavior change intervention's effect on handwashing outcomes. We also monitored functionality of the Povu Poa prototypes to identify design improvements necessary for continued high usage in institutional settings.MethodsThe intervention included the "Povu Poa", a new type of handwashing station that dispensed foaming soap and rinse water, combined with school-wide behavior change promotion based on disgust and social norms. In this stepped-wedge cluster-randomized trial, we randomly selected 30 schools and divided them into 3 groups of 10. Following baseline data collection, we delivered the intervention sequentially (Group 1: 3-5 weeks after baseline; Group 2: 6-8 weeks; Group 3: 19-24 weeks). We observed outcomes [1] availability of handwashing materials at handwashing places, and; 2) observed handwashing behavior after toilet use among schoolchildren) at baseline and in three follow-up rounds. We compared the outcomes between schools that had received the intervention and schools that had not yet received the intervention.ResultsWater and soap/soapy water were available at 2% of school visits before intervention, and at 42% of school visits after intervention.. Before intervention, we observed handwashing with water after 11% of 461 toilet use events; no one was observed to wash hands with soap/soapy water. After intervention, we observed handwashing after 62% of 383 toilet use events (PR = 5.96, 95% CI = 3.02, 11.76) and handwashing with soap/soapy water after 26% of events (PR incalculable). Foaming soap dispenser caps were cracked in 31% of all observations, but were typically still functional.ConclusionsOur combined equipment-behavior intervention increased availability of handwashing materials and improved the compliance with handwashing after using the toilet, but handwashing with soap was still rare. Equipment durability must be improved for deployment in schools at scale. American Economic Association's Registry for Randomized Controlled Trials; Trial Registry Number (TRN): AEARCTR-0000662; Date of Registry: April 14, 2015.
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- 2019
42. The role of water, sanitation and hygiene interventions in reducing soil-transmitted helminths: interpreting the evidence and identifying next steps
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Vaz Nery, Susana, Pickering, Amy J, Abate, Ebba, Asmare, Abraham, Barrett, Laura, Benjamin-Chung, Jade, Bundy, Donald AP, Clasen, Thomas, Clements, Archie CA, Colford, John M, Ercumen, Ayse, Crowley, Siobhan, Cumming, Oliver, Freeman, Matthew C, Haque, Rashidul, Mengistu, Birhan, Oswald, William E, Pullan, Rachel L, Oliveira, Rita G, Einterz Owen, Katey, Walson, Judd L, Youya, Ashrafedin, and Brooker, Simon J
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Biomedical and Clinical Sciences ,Clinical Sciences ,Prevention ,Clean Water and Sanitation ,Animals ,Clinical Trials as Topic ,Communicable Disease Control ,Feces ,Helminthiasis ,Helminths ,Humans ,Hygiene ,Sanitation ,Schools ,Soil ,Water ,Soil-transmitted helminths ,WASH ,Medical Microbiology ,Public Health and Health Services ,Mycology & Parasitology ,Tropical Medicine ,Microbiology ,Medical microbiology - Abstract
The transmission soil transmitted helminths (STH) occurs via ingestion of or contact with infective stages present in soil contaminated with human faeces. It follows therefore that efforts to reduce faecal contamination of the environment should help to reduce risk of parasite exposure and improvements in water, sanitation and hygiene (WASH) are seen as essential for the long-term, sustainable control of STH. However, the link between WASH and STH is not always supported by the available evidence from randomised controlled trials, which report mixed effects of WASH intervention on infection risk. This review critically summarises the available trial evidence and offers an interpretation of the observed heterogeneity in findings. The review also discusses the implications of findings for control programmes and highlights three main issues which merit further consideration: intervention design, exposure assessment, and intervention fidelity assessment.
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- 2019
43. Moving towards transformational WASH – Authors' reply
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Pickering, Amy J, Arnold, Benjamin F, Prendergast, Andrew J, Null, Clair, Winch, Peter J, Njenga, Sammy M, Rahman, Mahbubur, Ntozini, Robert, Benjamin-Chung, Jade, Stewart, Christine P, Colford, John M, Luby, Stephen, and Humphrey, Jean H
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Epidemiology ,Health Services and Systems ,Public Health ,Health Sciences ,Diarrhea ,Humans ,Microbiology ,Public Health and Health Services ,Health services and systems ,Public health - Published
- 2019
44. Evaluating the relationship between community water and sanitation access and the global burden of antibiotic resistance: an ecological study
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Fuhrmeister, Erica R, Harvey, Abigail P, Nadimpalli, Maya L, Gallandat, Karin, Ambelu, Argaw, Arnold, Benjamin F, Brown, Joe, Cumming, Oliver, Earl, Ashlee M, Kang, Gagandeep, Kariuki, Samuel, Levy, Karen, Pinto Jimenez, Chris E, Swarthout, Jenna M, Trueba, Gabriel, Tsukayama, Pablo, Worby, Colin J, and Pickering, Amy J
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- 2023
- Full Text
- View/download PDF
45. Risk factors for extended-spectrum beta-lactamase (ESBL)-producing E. coli carriage among children in a food animal-producing region of Ecuador: A repeated measures observational study
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Amato, Heather K., Loayza, Fernanda, Salinas, Liseth, Paredes, Diana, Garcia, Daniela, Sarzosa, Soledad, Saraiva-Garcia, Carlos, Johnson, Timothy J., Pickering, Amy J., Riley, Lee W., Trueba, Gabriel, and Graham, Jay P.
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United States. National Institutes of Health ,Tetracycline -- Waste management ,Medical research ,Imipenem -- Waste management ,Refuse and refuse disposal ,Children ,Cephaloridine ,Pets ,Moxalactam ,Medicine, Experimental ,Bacteria ,Beta lactamases ,Drug resistance in microorganisms -- Risk factors ,Cephalosporins ,Tetracyclines -- Waste management ,Escherichia coli ,Biological sciences - Abstract
Background The spread of antibiotic-resistant bacteria may be driven by human-animal-environment interactions, especially in regions with limited restrictions on antibiotic use, widespread food animal production, and free-roaming domestic animals. In this study, we aimed to identify risk factors related to commercial food animal production, small-scale or 'backyard' food animal production, domestic animal ownership, and practices related to animal handling, waste disposal, and antibiotic use in Ecuadorian communities. Methods and findings We conducted a repeated measures study from 2018 to 2021 in 7 semirural parishes of Quito, Ecuador to identify determinants of third-generation cephalosporin-resistant E. coli (3GCR-EC) and extended-spectrum beta-lactamase E. coli (ESBL-EC) in children. We collected 1,699 fecal samples from 600 children and 1,871 domestic animal fecal samples from 376 of the same households at up to 5 time points per household over the 3-year study period. We used multivariable log-binomial regression models to estimate relative risks (RR) of 3GCR-EC and ESBL-EC carriage, adjusting for child sex and age, caregiver education, household wealth, and recent child antibiotic use. Risk factors for 3GCR-EC included living within 5 km of more than 5 commercial food animal operations (RR: 1.26; 95% confidence interval (CI): 1.10, 1.45; p-value: 0.001), household pig ownership (RR: 1.23; 95% CI: 1.02, 1.48; p-value: 0.030) and child pet contact (RR: 1.23; 95% CI: 1.09, 1.39; p-value: 0.001). Risk factors for ESBL-EC were dog ownership (RR: 1.35; 95% CI: 1.00, 1.83; p-value: 0.053), child pet contact (RR: 1.54; 95% CI: 1.10, 2.16; p-value: 0.012), and placing animal feces on household land/crops (RR: 1.63; 95% CI: 1.09, 2.46; p-value: 0.019). The primary limitations of this study are the use of proxy and self-reported exposure measures and the use of a single beta-lactamase drug (ceftazidime with clavulanic acid) in combination disk diffusion tests for ESBL confirmation, potentially underestimating phenotypic ESBL production among cephalosporin-resistant E. coli isolates. To improve ESBL determination, it is recommended to use 2 combination disk diffusion tests (ceftazidime with clavulanic acid and cefotaxime with clavulanic acid) for ESBL confirmatory testing. Future studies should also characterize transmission pathways by assessing antibiotic resistance in commercial food animals and environmental reservoirs. Conclusions In this study, we observed an increase in enteric colonization of antibiotic-resistant bacteria among children with exposures to domestic animals and their waste in the household environment and children living in areas with a higher density of commercial food animal production operations., Author(s): Heather K. Amato 1,*, Fernanda Loayza 2, Liseth Salinas 2, Diana Paredes 2, Daniela Garcia 2, Soledad Sarzosa 2, Carlos Saraiva-Garcia 2, Timothy J. Johnson 3,4, Amy J. Pickering [...]
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- 2023
- Full Text
- View/download PDF
46. Predictors of Enteric Pathogens in the Domestic Environment from Human and Animal Sources in Rural Bangladesh
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Fuhrmeister, Erica R, Ercumen, Ayse, Pickering, Amy J, Jeanis, Kaitlyn M, Ahmed, Mahaa, Brown, Sara, Arnold, Benjamin F, Hubbard, Alan E, Alam, Mahfuja, Sen, Debashis, Islam, Sharmin, Kabir, Mir Himayet, Kwong, Laura H, Islam, Mahfuza, Unicomb, Leanne, Rahman, Mahbubur, Boehm, Alexandria B, Luby, Stephen P, Colford, John M, and Nelson, Kara L
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Vaccine Related ,Foodborne Illness ,Infectious Diseases ,Emerging Infectious Diseases ,Genetics ,Digestive Diseases ,2.2 Factors relating to the physical environment ,Aetiology ,Infection ,Clean Water and Sanitation ,Animals ,Bangladesh ,Child ,Escherichia coli ,Feces ,Humans ,Hygiene ,Sanitation ,Water Microbiology ,Environmental Sciences - Abstract
Fecal indicator organisms are measured to indicate the presence of fecal pollution, yet the association between indicators and pathogens varies by context. The goal of this study was to empirically evaluate the relationships between indicator Escherichia coli, microbial source tracking markers, select enteric pathogen genes, and potential sources of enteric pathogens in 600 rural Bangladeshi households. We measured indicators and pathogen genes in stored drinking water, soil, and on mother and child hands. Additionally, survey and observational data on sanitation and domestic hygiene practices were collected. Log10 concentrations of indicator E. coli were positively associated with the prevalence of pathogenic E. coli genes in all sample types. Given the current need to rely on indicators to assess fecal contamination in the field, it is significant that in this study context indicator E. coli concentrations, measured by IDEXX Colilert-18, provided quantitative information on the presence of pathogenic E. coli in different sample types. There were no significant associations between the human fecal marker (HumM2) and human-specific pathogens in any environmental sample type. There was an increase in the prevalence of Giardia lamblia genes, any E. coli virulence gene, and the specific E. coli virulence genes stx1/2 with every log10 increase in the concentration of the animal fecal marker (BacCow) on mothers' hands. Thus, domestic animals were important contributors to enteric pathogens in these households.
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- 2019
47. The implications of three major new trials for the effect of water, sanitation and hygiene on childhood diarrhea and stunting: a consensus statement.
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Cumming, Oliver, Arnold, Benjamin F, Ban, Radu, Clasen, Thomas, Esteves Mills, Joanna, Freeman, Matthew C, Gordon, Bruce, Guiteras, Raymond, Howard, Guy, Hunter, Paul R, Johnston, Richard B, Pickering, Amy J, Prendergast, Andrew J, Prüss-Ustün, Annette, Rosenboom, Jan Willem, Spears, Dean, Sundberg, Shelly, Wolf, Jennyfer, Null, Clair, Luby, Stephen P, Humphrey, Jean H, and Colford, John M
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Humans ,Growth Disorders ,Diarrhea ,Water ,Hygiene ,Sanitation ,Public Health ,Poverty ,Child ,Rural Population ,Randomized Controlled Trials as Topic ,Child Health ,Stunting ,Undernutrition ,Nutrition ,Prevention ,Pediatric ,General & Internal Medicine ,Medical and Health Sciences - Abstract
BackgroundThree large new trials of unprecedented scale and cost, which included novel factorial designs, have found no effect of basic water, sanitation and hygiene (WASH) interventions on childhood stunting, and only mixed effects on childhood diarrhea. Arriving at the inception of the United Nations' Sustainable Development Goals, and the bold new target of safely managed water, sanitation and hygiene for all by 2030, these results warrant the attention of researchers, policy-makers and practitioners.Main bodyHere we report the conclusions of an expert meeting convened by the World Health Organization and the Bill and Melinda Gates Foundation to discuss these findings, and present five key consensus messages as a basis for wider discussion and debate in the WASH and nutrition sectors. We judge these trials to have high internal validity, constituting good evidence that these specific interventions had no effect on childhood linear growth, and mixed effects on childhood diarrhea. These results suggest that, in settings such as these, more comprehensive or ambitious WASH interventions may be needed to achieve a major impact on child health.ConclusionThese results are important because such basic interventions are often deployed in low-income rural settings with the expectation of improving child health, although this is rarely the sole justification. Our view is that these three new trials do not show that WASH in general cannot influence child linear growth, but they do demonstrate that these specific interventions had no influence in settings where stunting remains an important public health challenge. We support a call for transformative WASH, in so much as it encapsulates the guiding principle that - in any context - a comprehensive package of WASH interventions is needed that is tailored to address the local exposure landscape and enteric disease burden.
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- 2019
48. The WASH Benefits and SHINE trials: interpretation of WASH intervention effects on linear growth and diarrhoea.
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Pickering, Amy J, Null, Clair, Winch, Peter J, Mangwadu, Goldberg, Arnold, Benjamin F, Prendergast, Andrew J, Njenga, Sammy M, Rahman, Mahbubur, Ntozini, Robert, Benjamin-Chung, Jade, Stewart, Christine P, Huda, Tarique MN, Moulton, Lawrence H, Colford, John M, Luby, Stephen P, and Humphrey, Jean H
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Humans ,Growth Disorders ,Diarrhea ,Hygiene ,Sanitation ,Child ,Preschool ,Infant ,Rural Population ,Health Promotion ,Kenya ,Zimbabwe ,Bangladesh ,Randomized Controlled Trials as Topic ,Water Quality ,Hand Disinfection ,Clinical Trials and Supportive Activities ,Prevention ,Pediatric ,Clinical Research ,Nutrition ,Clean Water and Sanitation ,Microbiology ,Public Health and Health Services - Abstract
Child stunting is a global problem and is only modestly responsive to dietary interventions. Numerous observational studies have shown that water quality, sanitation, and handwashing (WASH) in a household are strongly associated with linear growth of children living in the same household. We have completed three randomised efficacy trials testing improved household-level WASH with and without improved infant and young child feeding (IYCF) on stunting and diarrhoea in Bangladesh, Kenya, and Zimbabwe. In all trials, improved IYCF had a statistically significant benefit, but WASH had no effect on linear growth. In observational analyses of data from the control groups of the three trials, baseline sanitation was a strong risk factor for stunting in the study populations, suggesting this frequently reported association might be confounded by unmeasured factors of household wellbeing. WASH interventions reduced diarrhoea in Bangladesh, but not in Kenya or Zimbabwe. Intervention promoters visited participants six times per month in Bangladesh compared with monthly in Kenya and Zimbabwe; a review of the literature shows that virtually all published studies that have reported an effect on diarrhoea through home-based water treatment and handwashing promotion achieved high adherence by visiting participants at daily to fortnightly intervals. Despite achieving substantial behavioural change and significant reduction in infection prevalence for some enteric pathogens, detection of enteropathogens among children in the WASH groups of the trials was typically at ten times higher prevalence compared with high-income countries. Considering these results, we recommend that future research in the WASH sector focus on developing and evaluating interventions that are radically more effective in reducing faecal contamination in the domestic environment than the interventions implemented in these trials.
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- 2019
49. Effects of single and integrated water, sanitation, handwashing, and nutrition interventions on child soil-transmitted helminth and Giardia infections: A cluster-randomized controlled trial in rural Kenya.
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Pickering, Amy J, Njenga, Sammy M, Steinbaum, Lauren, Swarthout, Jenna, Lin, Audrie, Arnold, Benjamin F, Stewart, Christine P, Dentz, Holly N, Mureithi, MaryAnne, Chieng, Benard, Wolfe, Marlene, Mahoney, Ryan, Kihara, Jimmy, Byrd, Kendra, Rao, Gouthami, Meerkerk, Theodora, Cheruiyot, Priscah, Papaiakovou, Marina, Pilotte, Nils, Williams, Steven A, Colford, John M, and Null, Clair
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Animals ,Humans ,Helminths ,Giardia ,Giardiasis ,Soil ,Treatment Outcome ,Nutrition Assessment ,Sanitation ,Water Purification ,Adolescent ,Child ,Child ,Preschool ,Rural Population ,Female ,Male ,Hand Disinfection ,General & Internal Medicine ,Medical and Health Sciences - Abstract
BackgroundHelminth and protozoan infections affect more than 1 billion children globally. Improving water quality, sanitation, handwashing, and nutrition could be more sustainable control strategies for parasite infections than mass drug administration, while providing other quality of life benefits.Methods and findingsWe enrolled geographic clusters of pregnant women in rural western Kenya into a cluster-randomized controlled trial (ClinicalTrials.gov NCT01704105) that tested 6 interventions: water treatment, improved sanitation, handwashing with soap, combined water treatment, sanitation, and handwashing (WSH), improved nutrition, and combined WSH and nutrition (WSHN). We assessed intervention effects on parasite infections by measuring Ascaris lumbricoides, Trichuris trichiura, hookworm, and Giardia duodenalis among children born to the enrolled pregnant women (index children) and their older siblings. After 2 years of intervention exposure, we collected stool specimens from 9,077 total children aged 2 to 15 years in 622 clusters, including 2,346 children in an active control group (received household visits but no interventions), 1,117 in the water treatment arm, 1,160 in the sanitation arm, 1,141 in the handwashing arm, 1,064 in the WSH arm, 1,072 in the nutrition arm, and 1,177 in the WSHN arm. In the control group, 23% of children were infected with A. lumbricoides, 1% with T. trichiura, 2% with hookworm, and 39% with G. duodenalis. The analysis included 4,928 index children (median age in years: 2) and 4,149 older siblings (median age in years: 5); study households had an average of 5 people, 90% had dirt floors. Compared to the control group, Ascaris infection prevalence was lower in the water treatment arm (prevalence ratio [PR]: 0.82 [95% CI 0.67, 1.00], p = 0.056), the WSH arm (PR: 0.78 [95% CI 0.63, 0.96], p = 0.021), and the WSHN arm (PR: 0.78 [95% CI 0.64, 0.96], p = 0.017). We did not observe differences in Ascaris infection prevalence between the control group and the arms with the individual interventions sanitation (PR: 0.89 [95% CI 0.73, 1.08], p = 0.228), handwashing (PR: 0.89 [95% CI 0.73, 1.09], p = 0.277), or nutrition (PR: 86 [95% CI 0.71, 1.05], p = 0.148). Integrating nutrition with WSH did not provide additional benefit. Trichuris and hookworm were rarely detected, resulting in imprecise effect estimates. No intervention reduced Giardia. Reanalysis of stool samples by quantitative polymerase chain reaction confirmed the reductions in Ascaris infections measured by microscopy in the WSH and WSHN groups. Trial limitations included imperfect uptake of targeted intervention behaviors, limited power to detect effects on rare parasite infections, and that it was not feasible to blind participants and sample collectors to treatment status. However, lab technicians and data analysts were blinded to treatment status. The trial was funded by the Bill & Melinda Gates Foundation and the United States Agency for International Development.ConclusionsIntegration of improved water quality, sanitation, and handwashing could contribute to sustainable control strategies for Ascaris infections, particularly in similar settings with recent or ongoing deworming programs. Combining nutrition with WSH did not provide further benefits, and water treatment alone was similarly effective to integrated WSH. Our findings provide new evidence that drinking water should be given increased attention as a transmission pathway for Ascaris.Trial registrationClinicalTrials.gov NCT01704105.
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- 2019
50. Effect of Neighborhood Sanitation Coverage on Fecal Contamination of the Household Environment in Rural Bangladesh.
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Huda, Tarique Md Nurul, Schmidt, Wolf-Peter, Pickering, Amy J, Unicomb, Leanne, Mahmud, Zahid Hayat, Luby, Stephen P, and Biran, Adam
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Biomedical and Clinical Sciences ,Clinical Sciences ,Health Sciences ,Clinical Research ,Animals ,Child ,Preschool ,Cross-Sectional Studies ,Enterobacteriaceae ,Family Characteristics ,Feces ,Hand Disinfection ,Housing ,Humans ,Infant ,Livestock ,Multivariate Analysis ,Residence Characteristics ,Rural Population ,Sanitation ,Medical and Health Sciences ,Tropical Medicine ,Biomedical and clinical sciences ,Health sciences - Abstract
Enteric pathogens can be transmitted within the household and the surrounding neighborhood. The objective of this study was to understand the effect of neighborhood-level sanitation coverage on contamination of the household environment with levels of fecal indicator bacteria in rural Bangladesh. We conducted spot-check observations of sanitation facilities in neighboring households (NHs) within a 20-m radius of target households with children aged 6-24 months. Sanitation facilities were defined as improved (a private pit latrine with a slab or better) or unimproved. Fecal coliforms (FCs) on children's hands and sentinel toy balls were measured and used as indicators of household-level fecal contamination. We visited 1,784 NHs surrounding 428 target households. On average, sentinel toy balls had 2.11(standard deviation [SD] = 1.37) log10 colony-forming units (CFUs) of FCs/toy ball and children's hands had 2.23 (SD = 1.15) log10 CFU of FCs/two hands. Access to 100% private improved sanitation coverage in the neighborhood was associated with a small and statistically insignificant difference in contamination of sentinel toy balls (difference in means = -0.13 log10 CFU/toy ball; 95% confidence intervals [CI]: -0.64, 0.39; P = 0.63) and children's hands (difference in means = -0.11 log10 CFU/two hands; 95% CI: -0.53, 0.32; P = 0.62). Improved sanitation coverage in the neighborhood had limited measurable effect on FCs in the target household environment. Other factors such as access to improved sanitation in the household, absence of cow dung, presence of appropriate water drainage, and optimal handwashing practice may be more important in reducing FCs in the household environment.
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- 2019
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