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Simple Summary: Small ruminant lentiviruses (SRLVs) are responsible for a disease complex that includes a variety of clinical forms with a large degree of severity. The virus is highly variable, and 5 genotypes with 34 subgenotypes have been described so far. However, the application of different protocols for genotyping generated contradictory results with potential misclassification of some strains and/or identification of redundant new subgenotypes. To the best of our knowledge, no systematic review on the molecular characterization of SRLVs in sheep and goats is available. The present systematic review aims to provide an updated, in-depth, comprehensive overview of the phylogenesis of SRLVs. The systematic review was developed according to the PRISMA-P statement. Small ruminant lentiviruses (SRLVs) are responsible for chronic and progressive multisystemic clinical forms, which significantly reduce flocks' productivity and have a considerable economic impact on the small ruminant industry. Due to the increase in genetic analysis studies and the potential for misclassification of certain strains, owing to the high genetic variability of these viruses, a systematic review was deemed necessary. This review explores the types of matrices used for molecular detection and phylogenetic studies, the genomic regions selected as targets, and the software utilized for phylogenetic analysis, assessing the geographical distribution of identified genotypes and subgenotypes over time. A thorough comparison of the diagnostic approaches highlights the strengths and limitations of each method, identifying gaps that need to be addressed. Additionally, recombination events and compartmentalization are examined to provide an updated, detailed, and comprehensive overview of SRLV phylogenesis. [ABSTRACT FROM AUTHOR]

Abstract Lagoviruses are viruses of the Caliciviridae family affecting lagomorphs. Both pathogenic and non-pathogenic lagoviruses affect the European rabbit (Oryctolagus cuniculus), and they are phylogenetically distinguished. Rabbit Hemorrhagic Disease Virus (RHDV/GI.1) and Rabbit Hemorrhagic Disease Virus-2 (RHDV-2/GI.2) belong to the first group, while in the second group, several genotypes of Rabbit Calicivirus (RCV/GI.3-GI.4) are present. The first RCV strain was described in Italy in 1996, and since then, several RCV strains have been characterised in Europe and Australia. RCVs, different from the pathogenic hepatotropic RHDVs, have an enteric tropism and could be identified from the duodenum/intestine and faeces. This study aimed firstly to indirectly show through a seroepidemiological survey from 1998 to 2008 the circulation of RCVs strains in rabbit farms and then to genetically characterise RCV strains diagnosed in Italy in faecal and intestinal samples of wild and farmed rabbits collected in various regions in the following years (2000–2022). Of 262 analysed samples, 69 resulted in RT-PCR positive for lagovirus but negative for RHDV. Eleven RCV strains were characterised by complete vp60 sequencing. Phylogenetic analysis showed that the Italian RCV strains are grouped in European (RCV_E1/GI.3) and Australian (RCV_E2/GI.4) RCV clusters, with an estimated country prevalence of 26%. Based on the proposed genotype classification, considering the nucleotide differences of vp60 higher than 15%, we can hypothesise that two other genotypes, GI.5 and GI.6, might exist within the cluster of non-pathogenic viruses.

The molecular classification of Acanthamoeba is currently based on the analysis of 18S rDNA sequences, delimiting around twenty genotypes (T1–T23). In some cases, however, the resolution of 18S is limited, and other genetic markers could be useful for unravelling poorly resolved lineages. In this study, the partial large subunit (LSU) of rDNA and ITS were used to re-examine the Acanthamoeba palestinensis group (T2/T6 lineage), which consists of various poorly defined lineages, including the T2 and T6 genotypes. New sequences overlapping 18S, ITS, and LSU were recovered. The analysis placed previously identified partial ITS-LSU sequences as T2/T6 and further confirmed the separation of the OX1 lineage from T2. In addition, analysis of the second internal transcribed spacer (ITS-2) suggests that multiple species may be present within the T6 and OX1 lineages. The results obtained from the T2/T6 lineage analysis confirm the utility of partial LSU and ITS for the study of Acanthamoeba, suggesting their advantage for disentangling complex lineages. [ABSTRACT FROM AUTHOR]

Candida auris is an emerging yeast considered a serious threat to global health. We report the first case of C. auris candidemia in Southern Italy, characterized using whole genome sequencing (WGS), and compared with a second strain isolated from a patient who presented as C. auris-colonized following screening. The C. auris strain was isolated from clinical samples, identified via MALDI-TOF, and subjected to WGS. Antifungal susceptibility testing was performed using commercial broth microdilution plates, and resistance protein sequences were evaluated with TBLASTN-2.15.0. Following the initial C. auris isolation from patient A, active surveillance and environmental investigations were implemented for all ICU patients. Of the 26 ICU surfaces sampled, 46.1% tested positive for C. auris via real-time PCR. Screening identified a second patient (patient B) as C. auris-colonized. The phylogenetic characterization of strains from patients A and B, based on the D1/D2 region of the 28s rDNA and the internal transcribed spacer (ITS) region, showed high similarity with strains from Lebanon. SNP analysis revealed high clonality, assigning both strains to clade I, indicating a significant similarity with Lebanese strains. This case confirms the alarming spread of C. auris infections and highlights the need for stringent infection control measures to manage outbreaks. [ABSTRACT FROM AUTHOR]

This article presents an overview of experimental studies addressing the nature of neurovisceral interactions by analysis of heart rate variability at different stages of individual development and in members of different species. Analysis of heart rate variability is one of the most common and accessible methods for observing and assessing aspects of neurovisceral (specifically, neurocardiac) interactions in experiments. Non-stationary, non-linear components in the dynamics of RR intervals (the time intervals between adjacent heartbeats) reflect the processes coordinating cardiac activity with changes in the organization of neural activity supporting the ongoing relationship of an individual with the environment. Mathematically, these aspects of heart rate dynamics are expressed as estimates of the complexity, irregularity, entropy, and unpredictability of the time sequence of interbeat intervals. The dynamics of neurocardiac interactions described in this way are different in different species and become more complex during phylogenesis. Similarly, during individual development, heart rate dynamics become more complex and reflect, among other things, the degree of maturation of certain neural structures at different stages of ontogenesis. We address the dynamics of neurovisceral interactions during individual and phylogenetic development within the framework of the systems-evolutionary approach and interpret them in relation to changes in the structure of individual experience, i.e., the characteristics of a set of functional systems actualized as behavior, i.e., increases in the level of differentiation of the individual's relationships with the environment. [ABSTRACT FROM AUTHOR]

This report on the proceedings of the "Rank Horror" symposium, convened in May 2024 to reconsider Otto Rank's life, work, and enduring contributions to psychoanalytic theory and practice, includes a brief historical survey of Rank's relationship to Sigmund Freud and other original members of the International Psychoanalytic Association's Central Committee, and an account of the symposium's wider intellectual and political context. It outlines the reasons for returning to Rank now, and a summary of the papers presented. Particular focus is afforded to Rank's 1924 book, The Trauma of Birth. [ABSTRACT FROM AUTHOR]

Starting from simple clinical statistics, the spectrum of methods used in epilepsy research in the Institute of Physiology of the Czechoslovak (now Czech) Academy of Sciences progressively increased. Professor Servít used electrophysiological methods for study of brain activity in lower vertebrates, neuropathology was focused on electronmicroscopic study of cortical epileptic focus and ion-sensitive microelectrodes were used for studies of cortical direct current potentials. Developmental studies used electrophysiological methods (activity and projection of cortical epileptic foci, EEG under the influence of convulsant drugs, hippocampal, thalamic and cortical electrical stimulation for induction of epileptic afterdischarges and postictal period). Extensive pharmacological studies used seizures elicited by convulsant drugs (at first pentylenetetrazol but also other GABA antagonists as well as agonists of glutamate receptors). Motor performance and behavior were also studied during brain maturation. The last but not least molecular biology was included into the spectrum of methods. Many original data were published making a background of position of our laboratory in the first line of laboratories interested in brain development. [ABSTRACT FROM AUTHOR]

Enteroviruses (EVs) are ubiquitous viruses that circulate worldwide, causing sporadic or epidemic infections, typically during the summer and fall. They cause a broad spectrum of illnesses, ranging from an unspecified febrile clinical presentation to a severe illness. EVs are recognized to be the most frequent etiological agents of aseptic meningitis in children. However, as the infection is usually mild and self-limiting, it remains underestimated, and the epidemiology of EVs is poorly understood. To date, no vaccine or effective therapy for all types of enteroviruses is available, and EVs constitute a public health concern. Here, we investigated the molecular epidemiology of EV strains circulating in the Lazio region over a 10-year time span (2012–2023) by using a sequence-typing approach and phylogenetic analysis. The epidemiological trend of EV infection has undergone changes during the SARS-CoV-2 pandemic (2020–2021), which resulted in a modification in terms of the number of diagnosed cases and seasonality. From 2022, the circulation of EVs showed a behavior typical of the pre-pandemic period, although changes in predominantly circulating strains have been noted. Both epidemic and sporadic circulation events have been characterized in the Lazio region. Further analyses are needed to better characterize any strain with higher potential pathogenic power and to identify possible recombinant strains. [ABSTRACT FROM AUTHOR]

Rice root-knot caused by Meloidogyne graminicola is a major yield-limiting factor in all rice growing countries around the world, which is often ignored in Bangladesh due to its subtle and obscure above ground symptoms. The current study proposes a comprehensive diagnosis of rice root-knot nematode at the molecular level and analyzes the pathogenic diversity of M. graminicola population of different AEZs. Rice seedlings of a popular variety (BRRI Dhan28) showing galls in the roots were collected from thirty Agro-Ecological-Zones (AEZs) of Bangladesh. For molecular identification, nuclear DNA was collected from single second-stage juvenile and internal transcribed spacer (ITS) was used as a universal primer. Molecular identification and phylogenetic analyses revealed that all nematode populations of galled rice seedlings from different locations belong to M. graminicola. The nematode populations constitute six phylogenetic clades. Nematode population of phylogenetic clade II showed the highest no. of galls (178 ± 1.67), although galling index was higher and similar in clade I, clade-II, clade-III and clade-VI. The highest percent reduction in both vegetative and yield-contributing traits were recorded in clade-II. A negative correlation was found in galling incidence and all growth and yield parameters. Comparative hatching of M. graminicola from different locations reveals that the pathogenicity of M. graminicola depends on the genetic variability of the nematode population, but not on the hatched juveniles. It might be concluded that the rice root-knot nematodes (M. graminicola) are prevalent in all agro-ecological zones of Bangladesh, despite the most pathogenic groups being frequent in AEZ- 1, 6, 7, 10, 18, 19, 21 and appropriate management initiatives are therefore crucial for maximizing rice yield.

AbstractSchröder trees are biological models of evolution, with internal nodes having two or three children. We generalize the model to grow from an arbitrary stochastic process of independent nonnegative integers (not necessarily identically distributed). We call such a process the building sequence. We study the depth of leaves and the Sackin index for some specific building sequences, such as constant additions, Bernoulli, and Poisson-like models. We include an example that shows that the methods can be extended to exchangeable sequences. [ABSTRACT FROM AUTHOR]

Equine hepacivirus (EqHV, Flaviviridae, hepacivirus) is a small, enveloped RNA virus generally causing sub-clinical hepatitis with occasional fatalities. EqHV is reported in equids worldwide, but for Italy data are limited. To address this, a survey study was set up to estimate prevalence at a national level and among different production categories (equestrian; competition; work and meat; reproduction) and national macro-regions (North, Central, South, and Islands). Data obtained testing 1801 horse serum samples by Real-Time RT PCR were compared within the categories and regions. The NS3 fragment of the PCR-positive samples was sequenced by Sanger protocol for phylogenetic and mutational analysis. The tertiary structure of the NS3 protein was also assessed. The estimated national prevalence was 4.27% [1.97–6.59, 95% CI] and no statistical differences were detected among production categories and macro-regions. The phylogenesis confirmed the distribution in Italy of the three known EqHV subtypes, also suggesting a possible fourth sub-type that, however, requires further confirmation. Mutational profiles that could also affect the NS3 binding affinity to the viral RNA were detected. The present paper demonstrates that EqHV should be included in diagnostic protocols when investigating causes of hepatitis, and in quality control protocols for blood derived products due to its parental transmission. [ABSTRACT FROM AUTHOR]

Listeriosis is a severe infection caused by consuming food contaminated with Listeria monocytogenes, the primary cause of human listeriosis. This study aimed to identify L. monocytogenes phenotypically and genotypically using inlA and hlyA virulence genes, followed by DNA sequence analysis and antimicrobial sensitivity in food resources and human samples. 345 Samples were obtained randomly from different markets and supermarkets in Qena, Egypt, including 115 fish, 25 fish containers, 90 vegetables, 90 diarrheal samples, and 25 hand swabs from patients and fishermen, respectively. L. monocytogenes was confirmed in 11.30% (39/345) and 3.48% (12/345) of the examined samples using culture and conventional PCR methods, respectively. The frequencies of L. monocytogenes in fish, fish containers, vegetables, and humans were 8.70, 3.48; 20, 8; 18.89, 1.11 and 6.09, 4.35% by both methods, respectively, with a statistically significant difference. Although L. monocytogenes predominated in 5-17 and 31-43-year age groups, the age risk factor for patients was statistically insignificant from an epidemiological perspective. Higher incidences were found in females and urban areas 7.27 and 4.76% than in males and rural areas 0 and 3.70%, without a statistically significant difference. The inlA was identified in all isolates, but the hlyA was identified in 41.67%. The highest multiple antibiotic resistance (MAR) index 0.625 was found in a diarrheal swab; all collected isolates were completely resistant to ampicillin. Additionally, 25% of L. monocytogenes stains were multidrug-resistant. According to phylogenetic analysis, the local isolates obtained from samples of tilapia, catfish, fish containers, cauliflower, and humans shared plenty of similarities.

The molecular classification of Acanthamoeba is currently based on the analysis of 18S rDNA sequences, delimiting around twenty genotypes (T1–T23). In some cases, however, the resolution of 18S is limited, and other genetic markers could be useful for unravelling poorly resolved lineages. In this study, the partial large subunit (LSU) of rDNA and ITS were used to re-examine the Acanthamoeba palestinensis group (T2/T6 lineage), which consists of various poorly defined lineages, including the T2 and T6 genotypes. New sequences overlapping 18S, ITS, and LSU were recovered. The analysis placed previously identified partial ITS-LSU sequences as T2/T6 and further confirmed the separation of the OX1 lineage from T2. In addition, analysis of the second internal transcribed spacer (ITS-2) suggests that multiple species may be present within the T6 and OX1 lineages. The results obtained from the T2/T6 lineage analysis confirm the utility of partial LSU and ITS for the study of Acanthamoeba, suggesting their advantage for disentangling complex lineages.

Candida auris is an emerging yeast considered a serious threat to global health. We report the first case of C. auris candidemia in Southern Italy, characterized using whole genome sequencing (WGS), and compared with a second strain isolated from a patient who presented as C. auris-colonized following screening. The C. auris strain was isolated from clinical samples, identified via MALDI-TOF, and subjected to WGS. Antifungal susceptibility testing was performed using commercial broth microdilution plates, and resistance protein sequences were evaluated with TBLASTN-2.15.0. Following the initial C. auris isolation from patient A, active surveillance and environmental investigations were implemented for all ICU patients. Of the 26 ICU surfaces sampled, 46.1% tested positive for C. auris via real-time PCR. Screening identified a second patient (patient B) as C. auris-colonized. The phylogenetic characterization of strains from patients A and B, based on the D1/D2 region of the 28s rDNA and the internal transcribed spacer (ITS) region, showed high similarity with strains from Lebanon. SNP analysis revealed high clonality, assigning both strains to clade I, indicating a significant similarity with Lebanese strains. This case confirms the alarming spread of C. auris infections and highlights the need for stringent infection control measures to manage outbreaks.

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Simple Summary: The present study demonstrates the role of intensive poultry production in the rise of fowl adenovirus (FAdV), similar to what occurred for several multifactorial viral diseases of livestock. Although effective in limiting viral circulation, the applied control strategies, likely shaped its evolution. In fact, after the development and application of FAdV vaccines, an increase in evolutionary rate was observed and several sites and regions of the Hexon protein were proven under a significant pervasive or episodic diversifying selection, especially those exposed on the viral surface and target of the host response. The notion that FAdV has increased in relevance in the last years could thus be a misleading perception related to an increased diagnostic capability and awareness of the topic. Alternatively, a limited number of flocks could be more severely affected because of the waning population immunity. Further efforts should be devoted to the acquisition of more molecular data on other geographic regions and FAdV species, also to assess the representativeness of the present results on a broader scale. Fowl adenoviruses (FAdVs, species FAdV-A/-E) are responsible for several clinical syndromes reported with increasing frequency in poultry farms in the last decades. In the present study, a phylodynamic analysis was performed on a group of FAdV-D Hexon sequences with adequate available metadata. The obtained results demonstrated the long-term circulation of this species, at least several decades before the first identification of the disease. After a period of progressive increase, the viral population showed a high-level circulation from approximately the 1960s to the beginning of the new millennium, mirroring the expansion of intensive poultry production and animal trade. At the same time, strain migration occurred mainly from Europe to other continents, although other among-continent connections were estimated. Thereafter, the viral population declined progressively, likely due to the improved control measures, potentially including the development and application of FAdV vaccines. An increase in the viral evolutionary rate featured this phase. A role of vaccine-induced immunity in shaping viral evolution could thus be hypothesized. Accordingly, several sites of the Hexon, especially those targeted by the host response were proven under a significant pervasive or episodic diversifying selection. The present study results demonstrate the role of intensive poultry production and market globalization in the rise of FAdV. The applied control strategies, on the other hand, were effective in limiting viral circulation and shaping its evolution. [ABSTRACT FROM AUTHOR]

This study involved 20 patients affected by cystic echinococcosis (CE) who were referred to different hospitals of Sardinia (Italy) from 2017 to 2022. By means of a multidisciplinary approach, diagnosis was confirmed for CE in 18 patients and for different aetiologies in two subjects. Moreover, serology was positive for 15 subjects. Since multiple CE cysts were found in five patients, a total of 27 lesions were collected; however, only one for each patient was investigated for genetic characterization of E. granulosus s.s. DNA isolates. Our results included 15 fertile cysts that underwent DNA extraction and amplification by three different PCRs targeting nuclear (calreticulin) and mitochondrial genes (cox1 and nad5). DNA was sequenced, and by neighbour-joining phylogenetic trees we determined 10 G1 and five G3 genotypes previously reported in Sardinia. These sequences were used to construct a network, along with those circulating in Mediterranean areas. The haplotype network calculated on cox1 evidenced seven different haplotypes of the 15 isolates, with SAR2 the most represented, carried by seven cysts, and SAR17 never described in the Mediterranean area. Meanwhile, the nad5 sequences showed the most common haplotype as nd5SAR7, as well as two new haplotypes not previously described, nd5SAR13, isolated from a Sardinian patient, and nd5SAR14, isolated from a Romanian patient. [ABSTRACT FROM AUTHOR]

Nuclear and cytoplasmic DNA barcoding regions are useful for plant identification, breeding, and phylogenesis. In this study, the genetic diversity of 17 Diplotaxis species, was investigated with 5 barcode markers. The allelic variation was based on the sequences of chloroplast DNA markers including the spacer between trnL and trnF and tRNA-Phe gene (trnL-F), the rubisco (rbcl), the maturase K (matk), as well as the internal transcribed spacer (ITS) region of the nuclear ribosomal DNA. A highly polymorphic marker (HRM500) derived from a comparison of cytoplasmic genome sequences in Brassicaceae, was also included. Subsequently, a real-time PCR method coupled with HRM analysis was implemented to better resolve taxonomic relationships and identify assays suitable for species identification. Integration of the five barcode regions revealed a grouping of the species according to the common chromosomal set number. Clusters including species with n = 11 (D. duveryrieriana or cretacea, D. tenuifolia, D. simplex and D. acris), n = 8 (D. ibicensis, D. brevisiliqua and D. ilorcitana), and n = 9 (D. brachycarpa, D. virgata, D. assurgens, and D. berthautii) chromosomes were identified. Both phylogenetic analysis and the genetic structure of the collection identified D. siifolia as the most distant species. Previous studies emphasized this species' extremely high glucosinolate content, particularly for glucobrassicin. High-resolution melting analysis showed specific curve patterns useful for the discrimination of the species, thus determining ITS1 as the best barcode for fingerprinting. Findings demonstrate that the approach used in this study is effective for taxa investigations and genetic diversity studies. [ABSTRACT FROM AUTHOR]

The species Carnivore protoparvovirus 1 includes viruses, e.g. canine parvovirus (CPV-2) and feline panleukopenia virus (FPV), which are among the most relevant for pets, causing extremely severe clinical signs and high fatality rate in dogs and cats. Moreover, a broad range of wild hosts, including endangered ones, were proven to be susceptible. Currently, no data on CPV-2 molecular epidemiology and strain characterization are available in Ethiopia, also considering the frequent contacts between domestic and wild populations. In the present study, a molecular epidemiology survey was performed on 92 fecal samples collected from domestic (n = 84) and stray (n = 8) dogs in southwestern Ethiopia in 2021. Approximately, 10% of the samples tested positive and the complete VP2 sequences of 5 strains were obtained, classified within the CPV-2a (n = 1) and CPV-2c (n = 4) antigenic variants. In most instances, the closest genetic relatives were strains of Chinese origin, which is fully compatible with the intense relationships that have been developing between the two countries, involving human being travels and their pets as well. Considering the clinical relevance of this infection and the risk it poses to local domestic and wild carnivore populations, especially endangered ones, much stronger monitoring and surveillance activity on foreign incoming animals should be performed. More strict constraints on animal introduction, e.g. compulsory vaccination, should also be considered. [ABSTRACT FROM AUTHOR]

It is known that the psychrophilic pseudotuberculosis microbe serotype 1 (Y. pseudotuberculosis 0:1b) causing Far East scarlet-like fever (FESLF) an intestinal infection found in a wide range of invertebrates and vertebrates inhabiting cold regions in the Northern and Central Asia as well as Far East is direct ancestor of the plague causative agent Yersinia pestis. However, the mechanism of Y. pestis speciation remains poorly elucidated. Numerous Y. pestis phylogenies created by using molecular genetic (MG) technologies are largely contradictory, being not in line with reliable data obtained by natural science approaches (e.g., ecology, epizootology, biogeography, and paleontology), which disagree with current evolutionary doctrine (synthetic theory of evolution). The MG approach provides no definitive answer to the questions of where, when, how, and under what circumstances the species Y. pestis arose. One of the reasons for such situation might be due to inadequacy of using the molecular evolutionary model for Y. pestis phylogenetics. Knowledge of the life cycles for the ancestral pseudotuberculosis and derivative plague microbes as well as related unique environmental features allows to create a reliable ecological model for the plague microbe evolution to be further used for assessing patterns of molecular variability and building proper molecular model that might be accepted for MG-reconstruction of plague microbe history. According to the ecological model, the species Y. pestis was formed in a tritopic manner (almost) simultaneously from FESLF clones (populations) in the three geographical populations of the Mongolian marmot-tarbagan (Marmota sibirica) and the flea Oropsylla silantiewi parasitizing on it. The inducer of speciation was coupled to the last maximum (Sartan) cooling in Central Asia occurred 2215 thousand years ago. Soil cooling and deep freezing resulted in altered behavior of the marmot flea larvae with emergence of facultative hematophagy, which, in turn, led to a unique traumatic (compared to routine alimentary) infection route of sleeping marmots with FESLF and, as a result, a unique way of Y. pestis speciation. The molecular model should predict a Y. pestis peripatric tritope speciation, existing numerous parallelisms in intraspecific variability associated with tritope speciation, and the quantum principle of speciation in the highly variable heterothermic (heteroimmune) stressful marmot-flea (Marmota sibirica Oropsylla silantiewi) host-vector environment involving stress-induced mutagenesis. Such molecular model of evolution may be useful for improving molecular methodology of phylogenetic constructions for a wide range of parasitic microorganisms.

Cetacean morbillivirus (CeMV) has caused several outbreaks, unusual mortality events, and interepidemic single-lethal disease episodes in the Mediterranean Sea. Since 2012, a new strain with a northeast (NE) Atlantic origin has been circulating among Mediterranean cetaceans, causing numerous deaths. The objective of this study was to determine the prevalence of CeMV in cetaceans stranded in Italy between 2018 and 2021 and characterize the strain of CeMV circulating. Out of the 354 stranded cetaceans along the Italian coastlines, 113 were CeMV-positive. This prevalence (31.9%) is one of the highest reported without an associated outbreak. All marine sectors along the Italian coastlines, except for the northern Adriatic coast, reported a positive molecular diagnosis of CeMV. In one-third of the CeMV-positive cetaceans submitted to a histological evaluation, a chronic form of the infection (detectable viral antigen, the absence of associated lesions, and concomitant coinfections) was suspected. Tissues from 24 animals were used to characterize the strain, obtaining 57 sequences from phosphoprotein, nucleocapsid, and fusion protein genes, which were submitted to GenBank. Our sequences showed the highest identity with NE-Atlantic strain sequences, and in the phylogenetic study, they clustered together with them. Regarding age and species, most of these individuals were adults (17/24, 70.83%) and striped dolphins (19/24, 79.16%). This study improves our understanding on the NE-Atlantic CeMV strain in the Italian waters, supporting the hypothesis of an endemic circulation of the virus in this area; however, additional studies are necessary to deeply comprehend the epidemiology of this strain in the Mediterranean Sea.

Purpose: The present study aimed to record the prevalence, risk factors, molecular identification, and phylogeny of Nippostrongylus brasiliensis found in the small intestine of the lesser bandicoot rat, Bandicota bengalensis, a wild rodent species. Methods: A total of 100 bandicoot rats live trapped at two commensal urban locations (50 each), i.e., a fish market and railway station, in Ludhiana, Punjab State (India), from November 2020 to October 2021, were analysed for the presence of N. brasiliensis, a nematode parasite of zoonotic importance. Result: Overall, the small intestine of 43.00% of the rats was found severely infected with bright red coloured adult N. brasiliensis of both sexes (total of 1439 specimens). Faecal samples contained ellipsoidal and thin-shelled eggs measuring 62.25–74.70 m in length and 33.20–37.35 m in breadth. No significant (P > 0.05) effect of host age, sex, or season was observed on the rate of infection. The parasite intensity and mean abundance ranged from 27.68–38.04 and 10.52–18.26, respectively, indicating a high risk of disease transmission. Based on the morphology, the nematode parasite was identified as Nippostrongylus sp. Molecular identification was confirmed through PCR amplification of the mitochondrial cytochrome oxidase I gene, which showed a single band of approximately 355 bp. A comparison of the present isolate with the available sequences of Nippostrongylus species across the globe showed 100% nucleotide homology with N. brasiliensis sequences available in GenBank from Japan (AP017690), the USA (U57035), and New Zealand (NC033886). Conclusion: The study indicates that B. bengalensis inhabiting commensal urban areas is a reservoir host for N. brasiliensis, which if transmitted to humans and animals visiting the area may pose a potential health risk. The study thus suggests proper rodent population management close to human habitations to avoid the transmission of disease-causing agents. [ABSTRACT FROM AUTHOR]

Abstract Background As a new epi-center of COVID-19 in Asia and a densely populated developing country, Indonesia is facing unprecedented challenges in public health. SARS-CoV-2 lineage B.1.466.2 was reported to be an indigenous dominant strain in Indonesia (once second only to the Delta variant). However, it remains unclear how this variant evolved and spread within such an archipelagic nation. Methods For statistical description, the spatiotemporal distributions of the B.1.466.2 variant were plotted using the publicly accessible metadata in GISAID. A total of 1302 complete genome sequences of Indonesian B.1.466.2 strains with high coverage were downloaded from the GISAID’s EpiCoV database on 28 August 2021. To determine the molecular evolutionary characteristics, we performed a time-scaled phylogenetic analysis using the maximum likelihood algorithm and called the single nucleotide variants taking the Wuhan-Hu-1 sequence as reference. To investigate the spatiotemporal transmission patterns, we estimated two dynamic parameters (effective population size and effective reproduction number) and reconstructed the phylogeography among different islands. Results As of the end of August 2021, nearly 85% of the global SARS-CoV-2 lineage B.1.466.2 sequences (including the first one) were obtained from Indonesia. This variant was estimated to account for over 50% of Indonesia’s daily infections during the period of March–May 2021. The time-scaled phylogeny suggested that SARS-CoV-2 lineage B.1.466.2 circulating in Indonesia might have originated from Java Island in mid-June 2020 and had evolved into two disproportional and distinct sub-lineages. High-frequency non-synonymous mutations were mostly found in the spike and NSP3; the S-D614G/N439K/P681R co-mutations were identified in its larger sub-lineage. The demographic history was inferred to have experienced four phases, with an exponential growth from October 2020 to February 2021. The effective reproduction number was estimated to have reached its peak (11.18) in late December 2020 and dropped to be less than one after early May 2021. The relevant phylogeography showed that Java and Sumatra might successively act as epi-centers and form a stable transmission loop. Additionally, several long-distance transmission links across seas were revealed. Conclusions SARS-CoV-2 variants circulating in the tropical archipelago may follow unique patterns of evolution and transmission. Continuous, extensive and targeted genomic surveillance is essential.

Heterotis niloticus is a basal teleost, belonging to the Osteoglossidae family, which is widespread in many parts of Africa. The digestive tract of H. niloticus presents similar characteristics to those of higher vertebrates, exhibiting a gizzard-like stomach and lymphoid aggregates in the intestinal lamina propria. The adaptive immune system of teleost fish is linked with each of their mucosal body surfaces. In fish, the gut-associated lymphoid tissue (GALT) is generally a diffuse immune system that represents an important line of defense against those pathogens inhabiting the external environment that can enter through food. The GALT comprises intraepithelial lymphocytes, which reside in the epithelial layer, and lamina propria leukocytes, which consist of lymphocytes, macrophages, granulocytes, and dendritic-like cells. This study aims to characterize, for the first time, the leukocytes present in the GALT of H. niloticus, by confocal immuno- fluorescence techniques, using specific antibodies: toll-like receptor 2, major histocompatibility complex class II, S100 protein, serotonin, CD4, langerin, and inducible nitric oxide synthetase. Our results show massive aggregates of immune cells in the thickness of the submucosa, arranged in circumscribed oval-shaped structures that are morphologically similar to the isolated lymphoid follicles present in birds and mammals, thus expanding our knowledge about the intestinal immunity shown by this fish. [ABSTRACT FROM AUTHOR]

Age-related melanism for a dwarf species of the genus Macroparalepis, M. brevis, was described for the first time; thus, this phenomenon turns out to be a common generic character. Presumably, the trigger for coloration change is the transition to a mesobenthic lifestyle. The phylogenetic significance of age-related melanism in barracudinas (Paralepididae) is discussed, which may support a kinship of the genera Macroparalepis and Stemonosudis (including Dolichosudis). The species D. fuliginosa was recorded in the Indian Ocean for the first time. [ABSTRACT FROM AUTHOR]

Background: Prevotella copri is the most abundant member of the genus Prevotella that inhabits the human large intestines. Evidences correlated the increase in Prevotella abundance to inflammatory disorders, suggesting a pathobiont role. Objectives: The aim of this study was to investigate the phylogenetic dynamics of P. copri in patients with irritable bowel syndrome (IBS), inflammatory bowel diseases (IBDs) and in healthy volunteers (CTRL). Design: A phylogenetic approach was used to characterize 64 P. copri 16S rRNA sequences, selected from a metagenomic database of fecal and mucosal samples from 52 patients affected by IBD, 44 by IBS and 59 healthy. Methods: Phylogenetic reconstructions were carried out using the maximum likelihood (ML) and Bayesian methods. Results: Maximum likelihood phylogenetic tree applied onto reference and data sets, assigned all the reads to P. copri clade, in agreement with the taxonomic classification previously obtained. The longer mean genetic distances were observed for both the couples IBD and CTRL and IBD and IBS, respect to the distance between IBS and CTRL, for fecal samples. The intra-group mean genetic distance increased going from IBS to CTRLs to IBD, indicating elevated genetic variability within IBD of P. copri sequences. None clustering based on the tissue inflammation or on the disease status was evidenced, leading to infer that the variability seemed to not be influenced by concomitant diseases, disease phenotypes or tissue inflammation. Moreover, patients with IBS appeared colonized by different strains of P. copri. In IBS, a correlation between isolates and disease grading was observed. Conclusion: The characterization of P. copri phylogeny is relevant to better understand the interactions between microbiota and pathophysiology of IBD and IBS, especially for future development of therapies based on microbes (e.g. probiotics and synbiotics), to restore the microbiota in these bowel diseases. [ABSTRACT FROM AUTHOR]

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This paper discusses selected aspects of the theory of linguistic change in grammar. The main assumption is the claim that the development of the categorial functions of natural languages throughout the time (phylogenesis) mostly coincides with the stadiums of the acquisition of the same categories by an individual (ontogenesis). Using the examples of the development and acquisition of strong and weak verb forms in Germanic languages and the categorial links between aspectuality, temporality and modality of the verb, different stages that characterise the linguistic changes in question are analysed in comparison with the stages of their acquisition in the process of language acquisition among children between 2 and 14 years of age. The analysis proves that the connections between ontogenesis and phylogenesis are complex, so they cannot be always explained in a simple and definite manner. The change in either sphere has its own specific features and runs mutatis mutandis in both spheres. [ABSTRACT FROM AUTHOR]

Peroxidases are oxidoreductase enzymes that widely gained attention as biocatalysts for their robust catalytic activity, specificity, and regioselective functionality for phenolic compounds. The study of molecular aspects of peroxidases is as crucial as that of the physicochemical aspects. A bioinformatics approach is utilized in this study to investigate the structural aspects and functions of luffa peroxidase (LPrx) from Luffa acutangula. The evolutionary relationship of LPrx with other class III peroxidases was studied by constructing a neighbour-joining phylogenetic tree. An analysis of the phylogenetic tree revealed that plant peroxidases share a common ancestor. The gene ontology term showed that LPrx had a molecular functionality of the oxidation–reduction process, heme binding and peroxidase-like activity, and the biological function of hydrogen peroxide scavenging activity. The enzyme-ligand interactions were studied from a catalytic point of view using the molecular docking technique. The molecular docking was carried out with LPrx as a receptor and guaiacol, m-cresol, p-cresol, catechol, quinol, pyrogallol, 2,4-dimethoxyphenol, gallic acid, aniline, and o-phenylenediamine as ligands. The results presented in the current communication will have a significant implication in proteomics, biochemistry, biotechnology, and the potential applications of peroxidases in the biotransformations of organic compounds. [ABSTRACT FROM AUTHOR]

Mariantonietta Pisaturo,1 Alessandra Di Fraia,1 Laura Occhiello,1 Carmine Minichini,1 Mario Starace,1 Valentina Iodice,2 Nunzia Farella,2 Maria Stanzione,1 Nicola Coppola1 1Infectious Diseases, Department of Mental Health and Public Medicine, University of Campania “L. Vanvitelli”, Naples, Italy; 2IX Infectious Disease Unit, AORN dei Colli, Naples, ItalyCorrespondence: Nicola CoppolaDepartment of Mental Health and Public Medicine, Section of Infectious Diseases, University of Campania Luigi Vanvitelli, Via L. Armanni 5, Naples, 80131, ItalyTel +39 081 5666223Fax +39 081 5666013Email nicola.coppola@unicampania.itBackground: The present paper evaluates the genetic variability of HCV in patients with hepatocellular carcinoma (HCC).Methods: Amino acid substitutions (aas) in NS3, NS5A and core regions were analyzed in 17 patients with HCC (Cases) and 13 without HCC (Controls), all naïve to DAAs. For the Cases, a sample of neoplastic liver tissue, non-neoplastic liver tissue and a serum sample were collected; for the Controls, a sample of liver tissue was collected. Sanger sequencing of three regions was performed using homemade protocols.Results: Phylogenetic trees showed that there was no difference in the virus populations in the three compartments analyzed for the three HCV regions in patients with HCC. Low variability and no difference between the Cases and Controls were observed in the core and NS5A regions; however, in the NS3 region, a higher variability was observed in the Cases. No difference was observed in the core region between Cases and Controls. In NS3, aa substitutions at positions 103 and 122 were more frequently found in Cases than Controls (in both cases 50% vs 9.1%, p< 0.05); moreover, aas in positions 32, 44 (p=0.035 for both), 79 (p=0.008) and 121 (p=0.018) were observed in the Cases and absent in the Controls. Finally, considering the NS5A region, aa substitutions at positions 37 and 54 were more frequently identified in the Cases than the Controls, but without statistical significance.Conclusion: These data may suggest a higher aa variability in patients with HCC than in those without, especially in the NS3 region.Keywords: hepatocellular carcinoma, HCV, viral variability, chronic hepatitis C, chronic infection C, core region, NS5A region, NS3 region, aa substitutions, phylogenesis

Acanthamoeba is a ubiquitous free-living amoeba capable of being an opportunistic pathogen in humans and animals. A critical step in infection is the adhesion of the amoeba to host cells and tissues, and two major parasite adhesins, mannose-binding protein (MBP) and laminin-binding protein (LBP), are known to recognize the cell surface glycoproteins and those of the extracellular matrix, respectively. In this study, the available genomes of Acanthamoeba were analysed to recover the sequences of MBP and LBP using previously published genetic data. Genes for both proteins were successfully obtained from strains belonging to various genotypes (T4A, T4D, T4G, T4F, T2, T5, T10, T22, T7 and T18), resulting in a single gene for LBP but identifying two types of MBP, MBP1 and MBP2. Phylogenetic analysis based on deduced amino acid sequences shows that both MBP and LBP have a branching pattern that is consistent with that based on 18S rDNA, indicating that changes in both proteins occurred during diversification of Acanthamoeba lines. Notably, all MBPs possess a conserved motif, shared with some bacterial C-type lectins, which could be the recognition site for mannose binding. [ABSTRACT FROM AUTHOR]

Freud's theorising about anxiety has traditionally been based on its nosographical categories (anxiety neurosis, anxiety hysteria) or on the relationship between anxiety and repression (first and second theories of anxiety). While these types of approach have made it possible to identify some milestones in the development of the concept of anxiety, they have also obscured the relevance that Freud attributed to the phylogenetic argument. This article reviews the historical and conceptual context of Freud's main evolutionary references (Lamarck, Darwin, Haeckel, Weismann), and then analyses their presence and function in Freud's work, especially in his conception of anxiety. The article shows that while some of the evolutionary references became obsolete towards the end of the 19th century, they played such an important role in Freud's work that he never ceased to defend them. With respect to anxiety, though Freud did not make fully public his metapsychological hypothesis about the phylogenetic rationale, this perspective permeates his writing and is fundamental to his development of the concepts of neurotic anxiety/realistic anxiety and automatic anxiety/signal anxiety. [ABSTRACT FROM AUTHOR]

Simple Summary: This is a comprehensive review containing the most up-to-date information on Equine Hepacivirus, one of the recently discovered hepatic equine viruses, together with an analysis of serological and biomolecular presence presented in apreviously published papers, and an update on its genetic relationship within the species and with similar species. Extensive description of the EqHV features is included, and results are presented with several tables and figures, providing a valuable reference guide for further studies. Viral hepatitis has recently assumed relevance for equine veterinary medicine since a variety of new viruses have been discovered. Equine Hepacivirus (EqHV) is an RNA virus belonging to the Flaviviridae family that can cause subclinical hepatitis in horses, occasionally evolving into a chronic disease. EqHV, to date, is considered the closest known relative of human HCV. EqHV has been reported worldwide therefore assessing its features is relevant, considering both the wide use of blood products and transfusions in veterinary therapies and its similitude to HCV. The present review resumes the actual knowledge on EqHV epidemiology, risk factors and immunology, together with potential diagnostics and good practices for prevention. Moreover, adhering to PRISMA guidelines for systematic reviews a meta-analysis of serological and biomolecular prevalence and an updated phylogenetic description is presented as a benchmark for further studies. [ABSTRACT FROM AUTHOR]

The causative agent of plague, the microbe Yersinia pestis, is transmitted by flea bites and therefore occupies a unique position in the Enterobacteriaceae family of intestinal bacteria. There are two approaches to elucidating its origin and evolution (phylogenesis)—molecular genetic (MG) and ecological (ECO), which are based on different evolutionary models and lead to radically different conclusions. The MG approach proclaims the saltation principle of the formation of this pathogen from a clone of the pseudotuberculosis microbe Y. pseudotuberculosis 0:1b, the causative agent of Far East scarlet-like fever (FESLF), by insertion, inactivation, deletions, and, less often, recombination of genes and genetic structures, adopting as a basic evolutionary model the model of neutral evolution of nucleotide marker traits. The MG approach does not reveal the details of the speciation process. According to the evolutionary ECO model, the plague pathogen formed in the process of gradual population genetic transformations almost simultaneously in three geographical populations of the Tarbagan marmot (Marmota sibirica) from three different clones (populations) of the FESLF pathogen in Khentei, Khangai, and the Kharkhiraa−Turgen mountain range (Mongolia). The speciation process was triggered by a well-known abiotic factor—the last (Sartan) maximum cooling of the climate in Central Asia 22−15 ky BP, which caused deep freezing of the soil and a change in the behavior of the marmot flea Oropsylla silantiewi, which, in turn, led to aberrant traumatic infection with FESLF in Tarbagan marmot populations. Ecological factors required that Y. pestis create a unique evolutionary model. [ABSTRACT FROM AUTHOR]

Among the Poxviridae family, orthopoxvirus is the most notorious genus. Several DNA viruses belonging to this group are known to produce human disease from the life-threatening variola virus (VARV) (the causative agent of smallpox), monkeypox virus (MPXV), cowpox virus (CPXV), and vaccinia virus (VACV). These orthopoxviruses still remain a public health concern as VACV or CPXV still cause emerging endemic threads, especially in developing countries. MPXV is able to cause sporadic human outbreaks of a smallpox-like zoonotic disease and, in May 2022, hundreds of cases related to MPXV have been reported from more than 30 countries around the globe. At the end of July, monkeypox (MPX) outbreak was even declared a global health emergency by the World Health Organization (WHO). Many aspects remain unclear regarding this outbreak and a deep understanding of orthopoxvirus might have crucial and evident implications. During the era in which people under 45 years old are not protected against VACV, the potential use of orthopoxviruses as a biological weapon raises global concern considering the rapid spreading of the current MPX outbreak in vulnerable populations. Hence, we review the most recent evidence about phylogenesis, pathogenesis, prevention, and treatment for this concerning disease. [ABSTRACT FROM AUTHOR]

The identification and classification of strains of Acanthamoeba, a potentially pathogenic ubiquitous free-living amoeba, are largely based on the analysis of 18S rDNA sequences, currently delineating 23 genotypes, T1 to T23. In this study, the sequences of the ITS region, i.e., the 5.8S rDNA and the two internal transcribed spacers (ITS-1 and ITS-2), and those of the large subunit (LSU) rDNA of Acanthamoeba were recovered from amoeba genomes; the sequences are available in GenBank. The complete ITS–LSU sequences could be obtained for 15 strains belonging to 7 distinct lineages (T4A, T4D, T4F, T4G, T2, T5, and T18), and the site of the hidden break producing the 26Sα and 26Sβ was identified. For the other lines, either the LSU is partial (T2/T6, T7) or the ITS is fragmentary (T7, T10, T22). It is noteworthy that a number of sequences assigned to fungi turned out to actually be Acanthamoeba, only some of which could be affiliated with known genotypes. Analysis of the obtained sequences indicates that both ITS and LSU are promising for diagnostic and phylogenetic purposes. [ABSTRACT FROM AUTHOR]

Abstract Background Lilium is an important ornamental bulb, possesses medicinal properties, and is also edible. Species within the Lilium genus share very similar morphology and macroscopic characteristics, thus they cannot be easily and clearly distinguished from one another. To date, no efficient species-specific markers have been developed for classifying wild lily species, which poses an issue with further characterizing its medicinal properties. Results To develop a simple and reliable identification system for Lilium, 45 representative species from 6 sections were used to develop a DNA barcoding system, which was based on DNA sequence polymorphisms. In this study, we assessed five commonly used DNA barcode candidates (ITS, rbc L, ycf1b, mat K and psbA-trnH) and five novel barcode candidates obtained from highly variable chloroplast genomic regions (trnL-trnF, trnS-trnG, trnF-ndhJ, trnP-psaJ-rpI33 and psbB-psbH). We showed that a set of three novel DNA barcodes (ITS + trnP-psaJ-rpI33 + psbB-psbH) could be efficiently used as a genetic marker to distinguish between lily species, as assessed by methods including DNAsp, BI and ML tree, and Pair Wise Group (PWG). Conclusions A rapid and reliable DNA barcoding method was developed for all 45 wild Lilium species by using ITS, trnP-psaJ-rpI33, and psbB-psbH as DNA barcoding markers. The method can be used in the classification of wild Lilium species, especially endangered species, and also provides an effective method for selective lily breeding.

This study involved 20 patients affected by cystic echinococcosis (CE) who were referred to different hospitals of Sardinia (Italy) from 2017 to 2022. By means of a multidisciplinary approach, diagnosis was confirmed for CE in 18 patients and for different aetiologies in two subjects. Moreover, serology was positive for 15 subjects. Since multiple CE cysts were found in five patients, a total of 27 lesions were collected; however, only one for each patient was investigated for genetic characterization of E. granulosus s.s. DNA isolates. Our results included 15 fertile cysts that underwent DNA extraction and amplification by three different PCRs targeting nuclear (calreticulin) and mitochondrial genes (cox1 and nad5). DNA was sequenced, and by neighbour-joining phylogenetic trees we determined 10 G1 and five G3 genotypes previously reported in Sardinia. These sequences were used to construct a network, along with those circulating in Mediterranean areas. The haplotype network calculated on cox1 evidenced seven different haplotypes of the 15 isolates, with SAR2 the most represented, carried by seven cysts, and SAR17 never described in the Mediterranean area. Meanwhile, the nad5 sequences showed the most common haplotype as nd5SAR7, as well as two new haplotypes not previously described, nd5SAR13, isolated from a Sardinian patient, and nd5SAR14, isolated from a Romanian patient.

Rice root-knot caused by Meloidogyne graminicola is a major yield-limiting factor in all rice growing countries around the world, which is often ignored in Bangladesh due to its subtle and obscure above ground symptoms. The current study proposes a comprehensive diagnosis of rice root-knot nematode at the molecular level and analyzes the pathogenic diversity of M. graminicola population of different AEZs. Rice seedlings of a popular variety (BRRI Dhan28) showing galls in the roots were collected from thirty Agro-Ecological-Zones (AEZs) of Bangladesh. For molecular identification, nuclear DNA was collected from single second-stage juvenile and internal transcribed spacer (ITS) was used as a universal primer. Molecular identification and phylogenetic analyses revealed that all nematode populations of galled rice seedlings from different locations belong to M. graminicola. The nematode populations constitute six phylogenetic clades. Nematode population of phylogenetic clade II showed the highest no. of galls (178 ± 1.67), although galling index was higher and similar in clade I, clade-II, clade-III and clade-VI. The highest percent reduction in both vegetative and yield-contributing traits were recorded in clade-II. A negative correlation was found in galling incidence and all growth and yield parameters. Comparative hatching of M. graminicola from different locations reveals that the pathogenicity of M. graminicola depends on the genetic variability of the nematode population, but not on the hatched juveniles. It might be concluded that the rice root-knot nematodes (M. graminicola) are prevalent in all agro-ecological zones of Bangladesh, despite the most pathogenic groups being frequent in AEZ- 1, 6, 7, 10, 18, 19, 21 and appropriate management initiatives are therefore crucial for maximizing rice yield. [ABSTRACT FROM AUTHOR]

The consequences of engineered silver nanoparticle (AgNP) exposure and cellular interaction with the immune system are poorly understood. The immunocytes of the Eisenia andrei earthworm are frequently applied in ecotoxicological studies and possess functional similarity to vertebrate macrophages. Hence, we characterized and compared the endocytosis mechanisms for the uptake of 75 nm AgNPs by earthworm coelomocytes, human THP-1 monocytes, and differentiated THP-1 (macrophage-like) cells. Our results indicate that microtubule-dependent, scavenger–receptor, and PI3K signaling-mediated macropinocytosis are utilized during AgNP engulfment by human THP-1 and differentiated THP-1 cells. However, earthworm coelomocytes employ actin-dependent phagocytosis during AgNPs uptake. In both human and earthworm immunocytes, AgNPs were located in the cytoplasm, within the endo-/lysosomes. We detected that the internalization of AgNPs is TLR/MyD88-dependent, also involving the bactericidal/permeability-increasing protein (BPI) in the case of human immunocytes. The exposure led to decreased mitochondrial respiration in human immunocytes; however, in coelomocytes, it enhanced respiratory parameters. Our findings provide more data about NP trafficking as nano-carriers in the nanomedicine field, as well as contribute to an understanding of the ecotoxicological consequences of nanoparticle exposure. [ABSTRACT FROM AUTHOR]

Climate change has led to the spread of plant pathogens in novel environments, causing dramatic crop losses and economic damage. Botryosphaeriaceae represents a massive fungal family, containing a huge number of plant pathogens, which are able to infect several hosts. Among them, Macrophomina phaseolina is a necrotrophic fungus, responsible for several plant diseases, including the soft stem rot of common bean, crown rot on strawberry and charcoal rot of several legumes. Here, Macrophomina, causing crown charcoal rot in chickpeas, was isolated from symptomatic plants in Cicerale (SA), Campania, South Italy. Morphological and molecular characterization was carried out and pathogenicity tests were performed. Phylogenetic analyses were performed comparing Macrophomina strains coming from different geographic areas and hosts. The experiments confirmed the pathogenicity of the isolate CREA OF 189.2 on chickpea, while host range highlighted the polyphagous nature of this strain; thus, symptoms were reported on lentils, common bean and cantaloupe. The multidisciplinary approach allows us to increase the knowledge about this emerging pathogen. To the best of our knowledge, this is the first report on Macrophomina phaseolina from chickpeas in Italy. [ABSTRACT FROM AUTHOR]