15 results on '"Phuc, Ho D"'
Search Results
2. The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs
- Author
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Murray, Gemma G. R., primary, Hossain, A. S. Md. Mukarram, additional, Miller, Eric L., additional, Bruchmann, Sebastian, additional, Balmer, Andrew J., additional, Matuszewska, Marta, additional, Herbert, Josephine, additional, Hadjirin, Nazreen F., additional, Mugabi, Robert, additional, Li, Ganwu, additional, Ferrando, Maria Laura, additional, Fernandes de Oliveira, Isabela Maria, additional, Nguyen, Thanh, additional, Yen, Phung L. K., additional, Phuc, Ho D., additional, Zaw Moe, Aung, additional, Su Wai, Thiri, additional, Gottschalk, Marcelo, additional, Aragon, Virginia, additional, Valentin-Weigand, Peter, additional, Heegaard, Peter M. H., additional, Vrieling, Manouk, additional, Thein Maw, Min, additional, Thidar Myint, Hnin, additional, Tun Win, Ye, additional, Thi Hoa, Ngo, additional, Bentley, Stephen D., additional, Clavijo, Maria J., additional, Wells, Jerry M., additional, Tucker, Alexander W., additional, and Weinert, Lucy A., additional
- Published
- 2023
- Full Text
- View/download PDF
3. The emergence and diversification of a zoonotic pathogen from within the microbiota of intensively farmed pigs
- Author
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Murray, Gemma G.R., Hossain, A. S.Md Mukarram, Miller, Eric L., Bruchmann, Sebastian, Balmer, Andrew J., Matuszewska, Marta, Herbert, Josephine, Hadjirin, Nazreen F., Mugabi, Robert, Li, Ganwu, Ferrando, Maria Laura, de Oliveira, Isabela Maria Fernandes, Nguyen, Thanh, Yen, Phung L.K., Phuc, Ho D., Moe, Aung Zaw, Wai, Thiri Su, Gottschalk, Marcelo, Aragon, Virginia, Valentin-Weigand, Peter, Heegaard, Peter M.H., Vrieling, Manouk, Maw, Min Thein, Myint, Hnin Thidar, Win, Ye Tun, Hoa, Ngo Thi, Bentley, Stephen D., Clavijo, Maria J., Wells, Jerry M., Tucker, Alexander W., Weinert, Lucy A., Murray, Gemma G.R., Hossain, A. S.Md Mukarram, Miller, Eric L., Bruchmann, Sebastian, Balmer, Andrew J., Matuszewska, Marta, Herbert, Josephine, Hadjirin, Nazreen F., Mugabi, Robert, Li, Ganwu, Ferrando, Maria Laura, de Oliveira, Isabela Maria Fernandes, Nguyen, Thanh, Yen, Phung L.K., Phuc, Ho D., Moe, Aung Zaw, Wai, Thiri Su, Gottschalk, Marcelo, Aragon, Virginia, Valentin-Weigand, Peter, Heegaard, Peter M.H., Vrieling, Manouk, Maw, Min Thein, Myint, Hnin Thidar, Win, Ye Tun, Hoa, Ngo Thi, Bentley, Stephen D., Clavijo, Maria J., Wells, Jerry M., Tucker, Alexander W., and Weinert, Lucy A.
- Abstract
The expansion and intensification of livestock production is predicted to promote the emergence of pathogens. As pathogens sometimes jump between species, this can affect the health of humans as well as livestock. Here, we investigate how livestock microbiota can act as a source of these emerging pathogens through analysis of Streptococcus suis, a ubiquitous component of the respiratory microbiota of pigs that is also a major cause of disease on pig farms and an important zoonotic pathogen. Combining molecular dating, phylogeography, and comparative genomic analyses of a large collection of isolates, we find that several pathogenic lineages of S. suis emerged in the 19th and 20th centuries, during an early period of growth in pig farming. These lineages have since spread between countries and continents, mirroring trade in live pigs. They are distinguished by the presence of three genomic islands with putative roles in metabolism and cell adhesion, and an ongoing reduction in genome size, which may reflect their recent shift to a more pathogenic ecology. Reconstructions of the evolutionary histories of these islands reveal constraints on pathogen emergence that could inform control strategies, with pathogenic lineages consistently emerging from one subpopulation of S. suis and acquiring genes through horizontal transfer from other pathogenic lineages. These results shed light on the capacity of the microbiota to rapidly evolve to exploit changes in their host population and suggest that the impact of changes in farming on the pathogenicity and zoonotic potential of S. suis is yet to be fully realized.
- Published
- 2023
4. Inequality in mortality in Vietnam during a period of rapid transition
- Author
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Granlund, David, Chuc, Nguyen T., Phuc, Ho D., and Lindholm, Lars
- Published
- 2010
- Full Text
- View/download PDF
5. Additional file 2 of Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis
- Author
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Hadjirin, Nazreen F., Miller, Eric L., Murray, Gemma G. R., Yen, Phung L. K., Phuc, Ho D., Wileman, Thomas M., Hernandez-Garcia, Juan, Williamson, Susanna M., Parkhill, Julian, Maskell, Duncan J., Zhou, Rui, Fittipaldi, Nahuel, Gottschalk, Marcelo, Tucker, A. W. ( Dan), Hoa, Ngo Thi, Welch, John J., and Weinert, Lucy A.
- Abstract
Additional file 2: Figures S1-S13 and Table S2. Fig S1 – Phylogenetic tree. Fig S2 – MICs in Canada & the UK. Fig S3 - The effects of candidate determinants on MIC for beta-lactams Fig S4 - The effects of candidate determinants on MIC for MLSB. Fig S5 - The effects of candidate alleles on MIC for tetracyclines. Fig S6 - The effects of candidate alleles on MIC for fluoroquinolone. Fig S7 - The effects of candidate alleles on MIC for the aminoglycoside, spectinomycin. Fig S8 - The effects of candidate alleles on MIC for the pleuromutilin, tiamulin. Fig S9 - The effects of candidate alleles on MIC for trimethoprim (TMP). Fig S10 - Variation in the presence of candidate AMR determinants explains consistent differences between genetic clusters. Fig S11 - Methods of using candidate determinants to predict MIC. Fig S12 - Allelic variation in ermB and unidentified sources of epistasis. Fig S13 -High levels of ‘nestedness’ suggest that resistance determinants to beta-lactams are acquired in a particular order. Table S2 - Binomial tests showing that novel AMR variants are independently associated with MIC in different genetic clusters.
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- 2021
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6. Linking phenotype, genotype and ecology: antimicrobial resistance in the zoonotic pathogen Streptococcus suis
- Author
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Hadjirin, Nazreen F., Miller, Eric L., Murray, Gemma G. R., Yen, Phung L. K., Phuc, Ho D., Wileman, Thomas M., Hernandez-Garcia, Juan, Williamson, Susanna M., Parkhill, Julian, Maskell, Duncan J., Zhou, Rui, Fittipaldi, Nahuel, Gottschalk, Marcelo, Tucker, A.W. (Dan), Hoa, Ngo Thi, Welch, John J., and Weinert, Lucy A.
- Abstract
Antimicrobial resistance (AMR) is a major problem for human and animal health, and can co-vary with features of the bacterial genome, its ecological context, and with other traits. Here, we present an integrated study of AMR in the porcine zoonotic pathogen, Streptococcus suis . Collecting a diverse panel of 678 isolates, we obtained replicated measures of Minimum Inhibitory Concentration (MIC) for 16 widely used antimicrobials, from eight distinct classes. Then using whole genome sequences for each isolate, we identified 42 candidate AMR alleles, of which 21 were novel for S. suis . The presence of these alleles explains most of the observed variation in MIC but there was also unexplained variation, partly due to alleles of small effect, and epistatic interactions. We find that MIC varies with S. suis genetic background and country, but less so with clinical phenotype, serotype or over time. These ecological patterns are largely explained by allele prevalence. MIC values for different antibiotic classes positively correlate with one another, but there is limited evidence of direct pleiotropy, where single alleles confer resistance to multiple drug classes. Instead, this covariation is due to alleles for separate classes appearing together, but not necessarily in the same genomic region. The result is a significant excess of multi-drug resistant isolates. Indeed, we found more isolates that carried resistance alleles to five classes of antibiotics than isolates than carried no resistance alleles. We discuss the implications of our results for combatting AMR in S. suis , and for understanding multi-drug resistance in bacteria. Importance Streptococcus suis is a bacterium that causes serious disease with significant welfare and economic impacts for the global pig industry, and meningitis in humans. Antibiotics are the principal treatment for these bacteria, and so the evolution of antibiotic resistance presents a major problem for global food security and human health. We tested susceptibility to 16 different antibiotics in a global sample of 678 S. suis isolates. Using comparative analysis of whole genome sequences, we identified existing and novel genetic variants that affect resistance. Results show that, in most cases, the presence/absence of these alleles is a good predictor of resistance levels, which could help facilitate resistance monitoring through genome sequencing. We also observe a tendency for AMR variants to co-occur together in some S. suis isolates. These multi-drug resistant isolates should be monitored as a priority.
- Published
- 2020
- Full Text
- View/download PDF
7. A comprehensive portrait of antimicrobial resistance in the zoonotic pathogenStreptococcus suis
- Author
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Hadjirin, Nazreen F., primary, Miller, Eric L., additional, Murray, Gemma G. R., additional, Yen, Phung L. K., additional, Phuc, Ho D., additional, Wileman, Thomas M., additional, Hernandez-Garcia, Juan, additional, Williamson, Susanna M., additional, Parkhill, Julian, additional, Maskell, Duncan J., additional, Zhou, Rui, additional, Fittipaldi, Nahuel, additional, Gottschalk, Marcelo, additional, Tucker, A.W. (Dan), additional, Hoa, Ngo Thi, additional, Welch, John J., additional, and Weinert, Lucy A., additional
- Published
- 2020
- Full Text
- View/download PDF
8. High prevalence of antibiotic resistance in commensal Escherichia coli among children in rural Vietnam
- Author
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Dyar Oliver, Hoa Nguyen, Trung Nguyen V, Phuc Ho D, Larsson Mattias, Chuc Nguyen TK, and Lundborg Cecilia
- Subjects
Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Commensal bacteria represent an important reservoir of antibiotic resistance genes. Few community-based studies of antibiotic resistance in commensal bacteria have been conducted in Southeast Asia. We investigated the prevalence of resistance in commensal Escherichia coli in preschool children in rural Vietnam, and factors associated with carriage of resistant bacteria. Methods We tested isolates of E. coli from faecal samples of 818 children aged 6-60 months living in FilaBavi, a demographic surveillance site near Hanoi. Daily antibiotic use data was collected for participating children for three weeks prior to sampling and analysed with socioeconomic and demographic characteristics extracted from FilaBavi's re-census survey 2007. Descriptive statistics were generated, and a logistic regression model was used to identify contributions of the examined factors. Results High prevalences of resistance were found to tetracycline (74%), co-trimoxazole (68%), ampicillin (65%), chloramphenicol (40%), and nalidixic acid (27%). Two isolates were resistant to ciprofloxacin. Sixty percent of isolates were resistant to three or more antibiotics. Recent sulphonamide use was associated with co-trimoxazole resistance [OR 3.2, 95% CI 1.8-5.7], and beta-lactam use with ampicillin resistance [OR 1.8, 95% CI 1.3-2.4]. Isolates from children aged 6-23 months were more likely to be resistant to ampicillin [OR 1.8, 95% CI 1.3-2.4] and co-trimoxazole [OR 1.5, 95% CI 1.1-2.0]. Associations were identified between geographical areas and tetracycline and ampicillin resistance. Conclusions We present high prevalence of carriage of commensal E. coli resistant to commonly used antibiotics. The identified associations with recent antibiotic use, age, and geographical location might contribute to our understanding of carriage of antibiotic resistant commensal bacteria.
- Published
- 2012
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9. Decreased Streptococcus pneumoniae susceptibility to oral antibiotics among children in rural Vietnam: a community study
- Author
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Phuc Ho D, Eriksson Bo, Larsson Mattias, Trung Nguyen V, Hoa Nguyen, Chuc Nguyen TK, and Lundborg Cecilia
- Subjects
Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Streptococcus pneumoniae is the most significant bacterial cause of community-acquired pneumonia among children under five years worldwide. Updated resistance information of S. pneumoniae among children is essential to adjust the recommendations for empirical treatment of community-acquired pneumonia, which will have immense implications for local and global health. This study investigated the prevalence of antibiotic resistance in isolated strains of S. pneumoniae and relationship with antibiotic use and demographic factors of children under five in rural Vietnam in 2007. Methods In Bavi district, 847 children 6 to 60 months were selected from 847 households. The main child-caregivers in the households were interviewed weekly using structured questionnaires to collect information of daily illness symptoms and drug use for the selected child over a four-week period (from March through June 2007). In the 3rd week, the children were invited for a clinical examination and to collect nasopharyngeal samples for S. pneumoniae identification. Etest and disk diffusion were used to test antibiotic susceptibility. Results Of 818 participating children, 258 (32%) had ongoing respiratory infections, 421 (52%) carried S. pneumoniae, and 477 (58%) had used antibiotics within the previous three weeks. Of the 421 isolates, 95% were resistant to at least one antibiotic (401/421). Resistance to co-trimoxazole, tetracycline, phenoxymethylpenicillin, erythromycin and ciprofloxacin was 78%, 75%, 75%, 70% and 28%, respectively. Low resistance was noted for amoxicillin (4%), benzylpenicillin (4%), and cefotaxime (2%). The intermediate resistance to amoxicillin was 32%. Multidrug-resistance was seen in 60%. The most common pattern was co-resistance to co-trimoxazole, tetracycline and erythromycin. The proportion of children carrying resistant bacteria was higher among the children who had used antibiotics in the previous three weeks. Conclusions Resistance to commonly used antibiotics and multidrug-resistance of S. pneumoniae in the area is remarkably high. High-dose amoxicillin is the only investigated oral antibiotic that can possibly be used for treatment of community-acquired pneumococcal infections. Strategies to promote appropriate prescribing and dispensing of effective antibiotics should be immediately implemented for the benefit of local and global health.
- Published
- 2010
- Full Text
- View/download PDF
10. Remaining life expectancy among older people in a rural area of Vietnam: trends and socioeconomic inequalities during a period of multiple transitions
- Author
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Phuc Ho D, Hoi Le V, Dung Truong V, Chuc Nguyen TK, and Lindholm Lars
- Subjects
Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Better understanding of the trends and disparities in health at old age in terms of life expectancy will help to provide appropriate responses to the growing needs of health and social care for the older population in the context of limited resources. As a result of rapid economic, demographic and epidemiological changes, the number of people aged 60 and over in Vietnam is increasing rapidly, from 6.7% in 1979 to 9.2% in 2006. Life expectancy at birth has increased but not much are known about changes in old ages. This study assesses the trends and socioeconomic inequalities in RLE at age 60 in a rural area in an effort to highlight this vulnerable group and to anticipate their future health and social needs. Methods An abridged life table adjusted for small area data was used to estimate cohort life expectancies at old age and the corresponding 95% confidence intervals from longitudinal data collected by FilaBavi DSS during 1999-2006, which covered 7,668 people at age 60+ with 43,272 person-years, out of a total of 64,053 people with 388,278 person-years. Differences in life expectancy were examined according to socioeconomic factors, including socio-demographic characteristics, wealth, poverty and living arrangements. Results Life expectancies at age 60 have increased by approximately one year from the period 1999-2002 to 2003-2006. The increases are observed in both sexes, but are significant among females and relate to improvements among those who belong to the middle and upper household wealth quintiles. However, life expectancy tends to decrease in the most vulnerable groups. There is a wide gap in life expectancy according to poverty status and living arrangements, and the gap by poverty status has widened over the study period. The gender gap in life expectancy is consistent across all socioeconomic groups and tends to be wider amongst the more disadvantaged population. Conclusions There is a trend of increasing life expectancy among older people in rural areas of Vietnam. Inequalities in life expectancy exist between socioeconomic groups, especially between different poverty levels and also patterns of living arrangements. These inequalities should be addressed by appropriate social and health policies with stronger targeting of the poorest and most disadvantaged groups.
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- 2009
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11. Antibiotic prescribing and dispensing for acute respiratory infections in children: effectiveness of a multi-faceted intervention for health-care providers in Vietnam
- Author
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Hoa, Nguyen Quynh, primary, Thi Lan, Pham, additional, Phuc, Ho D., additional, Chuc, Nguyen Thi Kim, additional, and Stalsby Lundborg, Cecilia, additional
- Published
- 2017
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12. Remaining life expectancy among older people in a rural area of Vietnam : trends and socioeconomic inequalities during a period of multiple transitions
- Author
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Hoi, Le Van, Phuc, Ho D, Dung, Truong V, Chuc, Nguyen TK, Lindholm, Lars, Hoi, Le Van, Phuc, Ho D, Dung, Truong V, Chuc, Nguyen TK, and Lindholm, Lars
- Abstract
BACKGROUND: Better understanding of the trends and disparities in health at old age in terms of life expectancy will help to provide appropriate responses to the growing needs of health and social care for the older population in the context of limited resources. As a result of rapid economic, demographic and epidemiological changes, the number of people aged 60 and over in Vietnam is increasing rapidly, from 6.7% in 1979 to 9.2% in 2006. Life expectancy at birth has increased but not much are known about changes in old ages. This study assesses the trends and socioeconomic inequalities in RLE at age 60 in a rural area in an effort to highlight this vulnerable group and to anticipate their future health and social needs. METHODS: An abridged life table adjusted for small area data was used to estimate cohort life expectancies at old age and the corresponding 95% confidence intervals from longitudinal data collected by FilaBavi DSS during 1999-2006, which covered 7,668 people at age 60+ with 43,272 person-years, out of a total of 64,053 people with 388,278 person-years. Differences in life expectancy were examined according to socioeconomic factors, including socio-demographic characteristics, wealth, poverty and living arrangements. RESULTS: Life expectancies at age 60 have increased by approximately one year from the period 1999-2002 to 2003-2006. The increases are observed in both sexes, but are significant among females and relate to improvements among those who belong to the middle and upper household wealth quintiles. However, life expectancy tends to decrease in the most vulnerable groups. There is a wide gap in life expectancy according to poverty status and living arrangements, and the gap by poverty status has widened over the study period. The gender gap in life expectancy is consistent across all socioeconomic groups and tends to be wider amongst the more disadvantaged population. CONCLUSIONS: There is a trend of increasing life expectancy among older peo, Aging and Living conditions Program, Vietnam-Sweden Collaborative Program in Health, SIDA/Sarec
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- 2009
- Full Text
- View/download PDF
13. Decreased Streptococcus pneumoniae susceptibility to oral antibiotics among children in rural Vietnam: a community study
- Author
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Hoa, Nguyen Quynh, primary, Trung, Nguyen V, additional, Larsson, Mattias, additional, Eriksson, Bo, additional, Phuc, Ho D, additional, Chuc, Nguyen TK, additional, and Lundborg, Cecilia Stalsby, additional
- Published
- 2010
- Full Text
- View/download PDF
14. Remaining life expectancy among older people in a rural area of Vietnam: trends and socioeconomic inequalities during a period of multiple transitions
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Hoi, Le V, primary, Phuc, Ho D, additional, Dung, Truong V, additional, Chuc, Nguyen TK, additional, and Lindholm, Lars, additional
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- 2009
- Full Text
- View/download PDF
15. Decreased Streptococcus pneumoniae susceptibility to oral antibiotics among children in rural Vietnam: a community study.
- Author
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Nguyen Quynh Hoa, Trung, Nguyen V., Larsson, Mattias, Eriksson, Bo, Phuc, Ho D., Chuc, Nguyen T. K., and Lundborg, Cecilia Stalsby
- Subjects
STREPTOCOCCUS pneumoniae ,COMMUNITY-acquired infections ,JUVENILE diseases ,DISEASE susceptibility ,DRUG resistance in microorganisms - Abstract
Background: Streptococcus pneumoniae is the most significant bacterial cause of community-acquired pneumonia among children under five years worldwide. Updated resistance information of S. pneumoniae among children is essential to adjust the recommendations for empirical treatment of community-acquired pneumonia, which will have immense implications for local and global health. This study investigated the prevalence of antibiotic resistance in isolated strains of S. pneumoniae and relationship with antibiotic use and demographic factors of children under five in rural Vietnam in 2007. Methods: In Bavi district, 847 children 6 to 60 months were selected from 847 households. The main childcaregivers in the households were interviewed weekly using structured questionnaires to collect information of daily illness symptoms and drug use for the selected child over a four-week period (from March through June 2007). In the 3
rd week, the children were invited for a clinical examination and to collect nasopharyngeal samples for S. pneumoniae identification. Etest and disk diffusion were used to test antibiotic susceptibility. Results: Of 818 participating children, 258 (32%) had ongoing respiratory infections, 421 (52%) carried S. pneumoniae, and 477 (58%) had used antibiotics within the previous three weeks. Of the 421 isolates, 95% were resistant to at least one antibiotic (401/421). Resistance to co-trimoxazole, tetracycline, phenoxymethylpenicillin, erythromycin and ciprofloxacin was 78%, 75%, 75%, 70% and 28%, respectively. Low resistance was noted for amoxicillin (4%), benzylpenicillin (4%), and cefotaxime (2%). The intermediate resistance to amoxicillin was 32%. Multidrug-resistance was seen in 60%. The most common pattern was co-resistance to co-trimoxazole, tetracycline and erythromycin. The proportion of children carrying resistant bacteria was higher among the children who had used antibiotics in the previous three weeks. Conclusions: Resistance to commonly used antibiotics and multidrug-resistance of S. pneumoniae in the area is remarkably high. High-dose amoxicillin is the only investigated oral antibiotic that can possibly be used for treatment of community-acquired pneumococcal infections. Strategies to promote appropriate prescribing and dispensing of effective antibiotics should be immediately implemented for the benefit of local and global health. [ABSTRACT FROM AUTHOR]- Published
- 2010
- Full Text
- View/download PDF
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