235 results on '"Phillips, BL"'
Search Results
2. What is the risk of overcollecting for translocation? An opportunistic assessment of a wingless grasshopper
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Kearney, MR, Yagui, H, Hoffmann, AA, Phillips, BL, Kearney, MR, Yagui, H, Hoffmann, AA, and Phillips, BL
- Abstract
Translocation is an increasingly used tool in conservation management, but there is a risk that source populations are overcollected. The risk depends critically on the detection probability and the source population size. We quantified this risk for a wingless grasshopper population in a patch of remnant habitat in suburban Melbourne that was condemned to be cleared for housing development. We collected ∼2000 grasshoppers in five samples spread over 1 month and used the results to estimate the initial population size (∼3400) with high confidence. Despite our perception of substantially depleting the population, we removed only an estimated 60%, and this relatively high fecundity (∼50 eggs per lifetime) annual species had recovered by the following year to near its original density. Wild‐to‐wild translocation is likely to be a low‐cost and effective strategy in the conservation of many invertebrates, and our findings highlight the feasibility of using natural source populations.
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- 2024
3. Optimizing targeted gene flow to maximize local genetic diversity: when and how to act under various scenarios of environmental change
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Smart, AS, Phillips, BL, Smart, AS, and Phillips, BL
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Targeted gene flow is an emerging conservation approach which involves introducing a cohort of individuals with particular traits to locations where they can produce a conservation benefit. This technique is being proposed to adapt recipient populations to a known threat, but questions remain surrounding how best to maximize conservation outcomes during periods of continuous directional environmental change. Here we introduce a new management objective—to keep the recipient population extant and with maximum diversity of local alleles—and we explore how varying the timing and size of an introduction can maximise this objective. Our results reveal a trade-off between keeping a population extant and maintaining a high level of genetic diversity, but management levers can often optimize this so that nearly 100% of the allelic diversity is preserved. These optimum outcomes sets are highly sensitive to the predicted rate of environmental shift, as well as the level of outbreeding depression in the system.
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- 2023
4. Applying genetic technologies to combat infectious diseases in aquaculture
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Robinson, NA, Robledo, D, Sveen, L, Daniels, RR, Krasnov, A, Coates, A, Jin, YH, Barrett, LT, Lillehammer, M, Kettunen, AH, Phillips, BL, Dempster, T, Doeschl-Wilson, A, Samsing, F, Difford, G, Salisbury, S, Gjerde, B, Haugen, J-E, Burgerhout, E, Dagnachew, BS, Kurian, D, Fast, MD, Rye, M, Salazar, M, Bron, JE, Monaghan, SJ, Jacq, C, Birkett, M, Browman, HI, Skiftesvik, AB, Fields, DM, Selander, E, Bui, S, Sonesson, A, Skugor, S, Ostbye, T-KK, Houston, RD, Robinson, NA, Robledo, D, Sveen, L, Daniels, RR, Krasnov, A, Coates, A, Jin, YH, Barrett, LT, Lillehammer, M, Kettunen, AH, Phillips, BL, Dempster, T, Doeschl-Wilson, A, Samsing, F, Difford, G, Salisbury, S, Gjerde, B, Haugen, J-E, Burgerhout, E, Dagnachew, BS, Kurian, D, Fast, MD, Rye, M, Salazar, M, Bron, JE, Monaghan, SJ, Jacq, C, Birkett, M, Browman, HI, Skiftesvik, AB, Fields, DM, Selander, E, Bui, S, Sonesson, A, Skugor, S, Ostbye, T-KK, and Houston, RD
- Abstract
Disease and parasitism cause major welfare, environmental and economic concerns for global aquaculture. In this review, we examine the status and potential of technologies that exploit genetic variation in host resistance to tackle this problem. We argue that there is an urgent need to improve understanding of the genetic mechanisms involved, leading to the development of tools that can be applied to boost host resistance and reduce the disease burden. We draw on two pressing global disease problems as case studies-sea lice infestations in salmonids and white spot syndrome in shrimp. We review how the latest genetic technologies can be capitalised upon to determine the mechanisms underlying inter- and intra-species variation in pathogen/parasite resistance, and how the derived knowledge could be applied to boost disease resistance using selective breeding, gene editing and/or with targeted feed treatments and vaccines. Gene editing brings novel opportunities, but also implementation and dissemination challenges, and necessitates new protocols to integrate the technology into aquaculture breeding programmes. There is also an ongoing need to minimise risks of disease agents evolving to overcome genetic improvements to host resistance, and insights from epidemiological and evolutionary models of pathogen infestation in wild and cultured host populations are explored. Ethical issues around the different approaches for achieving genetic resistance are discussed. Application of genetic technologies and approaches has potential to improve fundamental knowledge of mechanisms affecting genetic resistance and provide effective pathways for implementation that could lead to more resistant aquaculture stocks, transforming global aquaculture.
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- 2023
5. O006 A randomised trial of normothermic machine perfusion versus static cold storage in donation after circulatory death renal transplantation
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Hosgood, SA, primary, Callaghan, C, additional, Wilson, C, additional, Oniscu, GC, additional, Phillips, BL, additional, Bates, L, additional, Smith, L, additional, and Nicholson, ML, additional
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- 2022
- Full Text
- View/download PDF
6. A metapopulation model reveals connectivity-driven hotspots in treatment resistance evolution in a marine parasite
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Miller-Saunders, K, Coates, A, Robinson, N, Dempster, T, Samsing, F, Johnsen, I, Phillips, BL, Miller-Saunders, K, Coates, A, Robinson, N, Dempster, T, Samsing, F, Johnsen, I, and Phillips, BL
- Abstract
In salmon aquaculture, the sustainable management of salmon lice (Lepeophtheirus salmonis) is limited by the adaptive capacity of the parasite. This is evident in the repeated evolution of pesticide resistance in the salmon louse population. To better prepare for resistance, we constructed a numerical metapopulation model that predicts the evolutionary dynamics of lice across an interconnected farm network. This model integrates within-farm population dynamics and between-farm louse dispersal, the latter using outputs from a state-of-the-art particle-tracking model. Distinct from previous metapopulation models, it also simulates spatial and temporal genetic variation arising from selection. The model was parameterized to simulate the evolution of resistance to the pesticide azamethiphos on farms in southern Norway. It successfully reproduced the rapid (within 10 years) evolution of azamethiphos resistance following extensive delousing treatments. It also identified strong spatial patterns in resistance, with regions of high farm connectivity being potential hotspots of louse adaptation. Rates of infestation and evolution were significantly reduced when highly connected farms were excluded from the simulation, compared to when low-connectivity or random sites were excluded. This model can be a valuable tool for coordinating pest management at a regional scale, in a way that slows or prevents the spread of resistance.
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- 2022
7. Effects of developmental environment on animal personality in a tropical skink
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de Jong, M, Phillips, BL, Llewelyn, J, Chapple, DG, Wong, BBM, de Jong, M, Phillips, BL, Llewelyn, J, Chapple, DG, and Wong, BBM
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Developmental environments play a significant role in shaping animal phenotype, including behavior. Within a species, individuals often differ in behavior in a consistent and repeatable way (i.e., demonstrate animal personality). This consistency in behavior can be affected by differences in conditions experienced early in life. It is, however, unclear whether effects of developmental environments on animal personality are driven by changes in within- or between-individual variation. To investigate this, we measured activity, exploration, sociability, and boldness in adult male southern rainforest sunskinks,Lampropholis similis, incubated at either 23 °C or 26 °C, and compared behavioral phenotypes between these incubation treatments. We also compared the behavior of these incubation groups to a cohort of wild-caught skinks to determine whether rearing in captivity also affected the personality of the lizards. Skinks that had been incubated at a higher temperature were more explorative and demonstrated personality in a larger suite of traits compared to lizards incubated at a lower temperature or caught in the wild. These differences among developmental environment were primarily driven by within-individual variation, which tended to be higher among the high incubation treatment. We also found no evidence for a behavioral syndrome in either captive- or wild-reared skinks. Our results suggest the potential for greater behavioral plasticity in skinks incubated at a higher temperature, which may enable them to cope with environmental change, such as climate warming, in the short term. Overall, we show that effects of developmental environment are complex and play a pivotal role in shaping animal personality. Significance statement Experiences during development are expected to influence how animals develop, including their behavior. We tested early environment effects on behavior in adult southern rainforest sunskinks by comparing lizards incubated at differen
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- 2022
8. Population genomics of a predatory mammal reveals patterns of decline and impacts of exposure to toxic toads
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von Takach, B, Ranjard, L, Burridge, CP, Cameron, SF, Cremona, T, Eldridge, MDB, Fisher, DO, Frankenberg, S, Hill, BM, Hohnen, R, Jolly, CJ, Kelly, E, MacDonald, AJ, Moussalli, A, Ottewell, K, Phillips, BL, Radford, IJ, Spencer, PBS, Trewella, GJ, Umbrello, LS, Banks, SC, von Takach, B, Ranjard, L, Burridge, CP, Cameron, SF, Cremona, T, Eldridge, MDB, Fisher, DO, Frankenberg, S, Hill, BM, Hohnen, R, Jolly, CJ, Kelly, E, MacDonald, AJ, Moussalli, A, Ottewell, K, Phillips, BL, Radford, IJ, Spencer, PBS, Trewella, GJ, Umbrello, LS, and Banks, SC
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Mammal declines across northern Australia are one of the major biodiversity loss events occurring globally. There has been no regional assessment of the implications of these species declines for genomic diversity. To address this, we conducted a species-wide assessment of genomic diversity in the northern quoll (Dasyurus hallucatus), an Endangered marsupial carnivore. We used next generation sequencing methods to genotype 10,191 single nucleotide polymorphisms (SNPs) in 352 individuals from across a 3220-km length of the continent, investigating patterns of population genomic structure and diversity, and identifying loci showing signals of putative selection. We found strong heterogeneity in the distribution of genomic diversity across the continent, characterized by (i) biogeographical barriers driving hierarchical population structure through long-term isolation, and (ii) severe reductions in diversity resulting from population declines, exacerbated by the spread of introduced toxic cane toads (Rhinella marina). These results warn of a large ongoing loss of genomic diversity and associated adaptive capacity as mammals decline across northern Australia. Encouragingly, populations of the northern quoll established on toad-free islands by translocations appear to have maintained most of the initial genomic diversity after 16 years. By mapping patterns of genomic diversity within and among populations, and investigating these patterns in the context of population declines, we can provide conservation managers with data critical to informed decision-making. This includes the identification of populations that are candidates for genetic management, the importance of remnant island and insurance/translocated populations for the conservation of genetic diversity, and the characterization of putative evolutionarily significant units.
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- 2022
9. Slow and steady wins the race: Spatial and stochastic processes and the failure of suppression gene drives
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Paril, JF, Phillips, BL, Paril, JF, and Phillips, BL
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Gene drives that skew sex ratios offer a new management tool to suppress or eradicate pest populations. Early models and empirical work suggest that these suppression drives can completely eradicate well-mixed populations, but models that incorporate stochasticity and space (i.e. drift and recolonization events) often result in loss or failure of the drive. We developed a stochastic model to examine these processes in a simple one-dimensional space. This simple space allows us to map the events and outcomes that emerged and examine how properties of the drive's wave of invasion affect outcomes. Our simulations, across a biologically realistic section of parameter space, suggest that drive failure might be a common outcome in spatially explicit, stochastic systems, and that properties of the drive wave appear to mediate outcomes. Surprisingly, the drives that would be considered fittest in an aspatial model were strongly associated with failure in the spatial setting. The fittest drives cause relatively fast moving, and narrow waves that have a high chance of being penetrated by wild-types (WTs) leading to WT recolonization, leading to failure. Our results also show that high rates of dispersal reduce the chance of failure because drive waves get disproportionately wider than WT waves as dispersal rates increase. Overall, wide, slow-moving drive waves were much less prone to failure. Our results point to the complexity inherent in using a genetic system to effect demographic outcomes and speak to a clear need for ecological and evolutionary modelling to inform the drive design process.
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- 2022
10. Trophic cascade driven by behavioral fine-tuning as naïve prey rapidly adjust to a novel predator
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Jolly, CJ, Smart, AS, Moreen, J, Webb, JK, Gillespie, GR, and Phillips, BL
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Marsupialia ,Ecology ,Predatory Behavior ,Odorants ,Animals ,0501 Ecological Applications, 0602 Ecology, 0603 Evolutionary Biology ,Selection, Genetic - Abstract
The arrival of novel predators can trigger trophic cascades driven by shifts in prey numbers. Predators also elicit behavioral change in prey populations, via phenotypic plasticity and/or rapid evolution, and such changes may also contribute to trophic cascades. Here, we document rapid demographic and behavioral changes in populations of a prey species (grassland melomys Melomys burtoni, a granivorous rodent) following the introduction of a novel marsupial predator (northern quoll Dasyurus hallucatus). Within months of quolls appearing, populations of melomys exhibited reduced survival and population declines relative to control populations. Quoll-invaded populations were also significantly shyer than nearby, quoll-free populations of conspecifics. This rapid but generalized response to a novel threat was replaced over the following 2 yr with more threat-specific antipredator behaviors (i.e., predator-scent aversion). Predator-exposed populations, however, remained more neophobic than predator-free populations throughout the study. These behavioral responses manifested rapidly in changed rates of seed predation by melomys across treatments. Quoll-invaded melomys populations exhibited lower per-capita seed take rates, and rapidly developed an avoidance of seeds associated with quoll scent, with discrimination playing out over a spatial scale of tens of meters. Presumably the significant and novel predation pressure induced by quolls drove melomys populations to fine-tune behavioral responses to be more predator specific through time. These behavioral shifts could reflect individual plasticity (phenotypic flexibility) in behavior or may be adaptive shifts from natural selection imposed by quoll predation. Our study provides a rare insight into the rapid ecological and behavioral shifts enacted by prey to mitigate the impacts of a novel predator and shows that trophic cascades can be strongly influenced by behavioral as well as numerical responses.
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- 2021
11. Identifying the most effective behavioural assays and predator cues for quantifying anti-predator responses in mammals: a systematic review protocol
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Harrison, ND, Phillips, BL, Hemmi, JM, Wayne, AF, Steven, R, Mitchell, NJ, Harrison, ND, Phillips, BL, Hemmi, JM, Wayne, AF, Steven, R, and Mitchell, NJ
- Abstract
Background Mammals, globally, are facing population declines. Strategies increasingly employed to recover threatened mammal populations include protecting populations inside predator-free havens, and translocating animals from one site to another, or from a captive breeding program. These approaches can expose predator-naïve animals to predators they have never encountered and as a result, many conservation projects have failed due to the predation of individuals that lacked appropriate anti-predator responses. Hence robust ways to measure anti-predator responses are urgently needed to help identify naïve populations at risk, to select appropriate animals for translocation, and to monitor managed populations for trait change. Here, we outline a protocol for a systematic review that collates existing behavioural assays developed for the purpose of quantifying anti-predator responses, and identifies assay types and predator cues that provoke the greatest behavioural responses. Methods We will retrieve articles from academic bibliographic databases and grey literature sources (such as government and conservation management reports), using a Boolean search string. Each article will be screened for the satisfaction of eligibility criteria determined using the PICO (Population—Intervention—Comparator—Outcome) framework, to yield the final article pool. Using metadata extracted from each article, we will map all known behavioural assays for quantifying anti-predator responses in mammals and will then examine the context in which each assay has been implemented (e.g. species tested, predator cue characteristics). Finally, with mixed effects modelling, we will determine which of these assays and predator cue types elicit the greatest behavioural responses (standardised difference in response between treatment and control groups). The final review will highlight the most robust methodology, will reveal promising techniques on which to focus future assay development
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- 2021
12. Novel Predators can Elicit Rapid Shifts in Prey Demographics and Behavior
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Jolly, CJ, Smart, AS, Moreen, J, Webb, JK, Gillespie, GR, Phillips, BL, Jolly, CJ, Smart, AS, Moreen, J, Webb, JK, Gillespie, GR, and Phillips, BL
- Published
- 2021
13. Effects of learning and adaptation on population viability
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Indigo, NL, Jolly, CJ, Kelly, E, Smith, J, Webb, JK, Phillips, BL, Indigo, NL, Jolly, CJ, Kelly, E, Smith, J, Webb, JK, and Phillips, BL
- Abstract
Cultural adaptation is one means by which conservationists may help populations adapt to threats. A learned behavior may protect an individual from a threat, and the behavior can be transmitted horizontally (within generations) and vertically (between generations), rapidly conferring population-level protection. Although possible in theory, it remains unclear whether such manipulations work in a conservation setting; what conditions are required for them to work; and how they might affect the evolutionary process. We examined models in which a population can adapt through both genetic and cultural mechanisms. Our work was motivated by the invasion of highly toxic cane toads (Rhinella marina) across northern Australia and the resultant declines of endangered northern quolls (Dasyurus hallucatus), which attack and are fatally poisoned by the toxic toads. We examined whether a novel management strategy in which wild quolls are trained to avoid toads can reduce extinction probability. We used a simulation model tailored to quoll life history. Within simulations, individuals were trained and a continuous evolving trait determined innate tendency to attack toads. We applied this model in a population viability setting. The strategy reduced extinction probability only when heritability of innate aversion was low (<20%) and when trained mothers trained >70% of their young to avoid toads. When these conditions were met, genetic adaptation was slower, but rapid cultural adaptation kept the population extant while genetic adaptation was completed. To gain insight into the evolutionary dynamics (in which we saw a transitory peak in cultural adaptation over time), we also developed a simple analytical model of evolutionary dynamics. This model showed that the strength of natural selection declined as the cultural transmission rate increased and that adaptation proceeded only when the rate of cultural transmission was below a critical value determined by the relative levels of pr
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- 2021
14. No behavioral syndromes or sex-specific personality differences in the southern rainforest sunskink (Lampropholis similis)
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Bshary, R, Goulet, CT, Hart, W, Phillips, BL, Llewelyn, J, Wong, BBM, Chapple, DG, Bshary, R, Goulet, CT, Hart, W, Phillips, BL, Llewelyn, J, Wong, BBM, and Chapple, DG
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Behavioral syndromes, when individuals within a population express consistent behavioral differences across time and context, are widespread in animal taxa. For many species, males and females experience different selective pressures after maturation, resulting in the divergence of life‐history and behavioral traits. However, the potential for sex‐specific differences in individual behaviors and behavioral syndromes has rarely been assessed. Here, we tested for sex‐specific differences in behavior (activity, exploration, sociability) and personality in the southern rainforest sunskink, Lampropholis similis. We found that most behaviors in L. similis did not differ between sexes, the exception being sociality which was higher in females than males. In terms of consistency among behaviors, activity and exploration, but not sociability, were repeatable, and there were no sex‐specific differences in repeatability of behavioral traits. Although a behavioral syndrome among these three traits is present in a congener (L. delicata), we found no evidence for such a syndrome in either sex of L. similis. Our study is consistent with the results of studies on other Lampropholis skinks that have found only limited sexual differences in behavior. More broadly, our study demonstrates there can be considerable differences in the presence or absence of behavioral syndromes in closely related species.
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- 2021
15. Rapid evolution in predator-free conservation havens and its effects on endangered species recovery
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Jolly, CJ, Phillips, BL, Jolly, CJ, and Phillips, BL
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- 2021
16. Evolution of salmon lice in response to management strategies: a review
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Coates, A, Phillips, BL, Bui, S, Oppedal, F, Robinson, NA, Dempster, T, Coates, A, Phillips, BL, Bui, S, Oppedal, F, Robinson, NA, and Dempster, T
- Abstract
Ectoparasitic salmon lice (Lepeophtheirus salmonis) present a major challenge to Atlantic salmon (Salmo salar) aquaculture. The demand for effective louse control has produced diverse management strategies. These strategies essentially impose novel selection pressures on parasite populations, driving the evolution of resistance. Here we assess the potential for salmon lice to adapt to current prevention and control methods. Lice have evolved resistance to at least four of five chemical therapeutants, and use of these chemicals has declined significantly in recent years. The industry has shifted to alternative non‐chemical approaches, yet lice may adapt to these as well. Early research suggests that phenotypic variation exists in the louse population upon which non‐chemical selection pressures could act and that this variation may have a genetic basis. From the existing evidence, as well as an examination of evolutionary processes in other relevant parasite and pest systems, we conclude that the evolution of non‐chemical resistance is an emergent concern that must be considered by the industry. We recommend areas for focused research to better assess this risk. It is also important to determine whether phenotypic shifts in response to non‐chemical selection may shift the ecological niche of the parasite, as this may have cascading effects on wild salmon populations. We also recommend further research to identify strategy combinations that have antagonistic selective effects that slow louse evolution and those with synergistic effects that should be avoided. Greater understanding of evolutionary processes can inform aquaculture policies that counteract the rise of resistant parasite populations.
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- 2021
17. Energetic scaling across different host densities and its consequences for pathogen proliferation
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Hawley, D, Norgaard, LS, Ghedini, G, Phillips, BL, Hall, MD, Hawley, D, Norgaard, LS, Ghedini, G, Phillips, BL, and Hall, MD
- Abstract
The spread of infectious disease is determined by the ability of a pathogen to proliferate within and spread between susceptible hosts. Processes that limit the performance of a pathogen thus occur at two scales: varying with both the availability of energy within a host, and the number of susceptible hosts in a patch. When the rate at which a host intakes and expends energy is density‐dependent, these two processes are intimately linked. By modifying how hosts compete for and expend resources, a shift in population density may contribute to differences in the flow of energy in a host–pathogen system, both in terms of the energy available for a host to grow, reproduce and fight infection, as well as the energy available for a pathogen to exploit. Energy flux, therefore, connects the two contrasting scales of within‐ and between‐host dynamics by directly linking the proliferation of a pathogen to the number of hosts circulating within a patch. We use the host Daphnia magna to explore the relationship between energy intake and expenditure at various population densities, as estimated by feeding and metabolic rates respectively. By infecting hosts with the bacterial pathogen Pasteuria ramosa, we then explore how infection changes the relative balance of energy intake and expenditure, and how this energy scope translates into production of transmission spores. Our work demonstrates that energy intake declines at a faster rate with density than does metabolic rate, leaving more excess energy (i.e. discretionary energy) available for both hosts and their dependent pathogens at low population densities. This energetic advantage translates positively into host and pathogen growth, with the production of mature transmission spores benefiting most from correlated changes in host body size, as well as a direct connection between energy scope and spore loads. Our findings reinforce how patch quality for a pathogen operates at two contrasting scales, with the within‐host prolife
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- 2021
18. Farmed salmonids drive the abundance, ecology and evolution of parasitic salmon lice in Norway
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Dempster, T, Overton, K, Bui, S, Stien, LH, Oppedal, F, Karlsen, O, Coates, A, Phillips, BL, Barrett, LT, Dempster, T, Overton, K, Bui, S, Stien, LH, Oppedal, F, Karlsen, O, Coates, A, Phillips, BL, and Barrett, LT
- Abstract
Sea cage fish farming is typically open to the environment, with disease transmission possible between farmed and wild hosts. In salmonid aquaculture, salmon louse Lepeophtheirus salmonis infestations cause production losses, reduce welfare for farmed fish and increase infestation rates for wild fish populations. The high density of hosts in farms likely also shifts the coevolutionary arms race between host and parasite, with ecological and evolutionary consequences for the salmon louse. Using farm-reported salmon and louse abundances and publicly reported estimates of wild salmonid host abundances and the salmon lice they carry, we estimated (1) the relative abundance of farmed and wild salmonid hosts and (2) the relative importance of each for the abundance of salmon lice for the coastal zone of Norway from 1998 to 2017. Farmed hosts increased in importance over time with the expansion of the industry. From 2013 to 2017, farmed salmonids outnumbered wild salmonids by 267-281:1. By 2017, farmed salmonids accounted for 99.6% of available hosts and produced 99.1% of adult female salmon lice and 97.6% of mated (ovigerous) adult female salmon lice in Norwegian coastal waters. The persistent dominance of farmed hosts has clear implications: (1) management decisions that aim to limit lice abundance can be guided by lice data from farms alone, as lice on wild salmonids make a trivial contribution to the national lice population; and (2) strategies to prevent or treat lice infestations are vulnerable to the evolution of resistance, as the pool of wild hosts is inconsequential and will not act as a refuge large enough to stem the evolution of resistance. As the Norwegian salmon industry expands and salmon lice infestations continue, farmed salmon will drive the ecology and evolution of salmon lice.
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- 2021
19. Parasite management in aquaculture exerts selection on salmon louse behaviour
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Coates, A, Johnsen, IA, Dempster, T, Phillips, BL, Coates, A, Johnsen, IA, Dempster, T, and Phillips, BL
- Abstract
The evolution of pest resistance to management strategies is a major challenge for farmed systems. Mitigating the effects of pest adaptation requires identifying the selective pressures imposed by these strategies. In Atlantic salmon (Salmo salar) aquaculture, barriers are used to prevent salmon louse (Lepeophtheirus salmonis) larvae (copepodids) from entering salmon cages. These barriers are effective against shallow-swimming copepodids, but those swimming deeper can pass underneath and infest salmon. Laboratory experiments suggest that depth regulation in copepodids is a variable behavioural trait with a genetic basis. We used biological-hydrodynamic dispersal models to assess how this trait variation alters the dispersion of lice through the ocean environment and into farms. The dispersal of copepodids with 3 behavioural phenotypes (deep, mean or shallow) was modelled over winter-spring and spring-summer periods in a Norwegian fjord system with intensive aquaculture. The infestation pressure of each phenotype on barrier cages was estimated from their modelled depth distributions: copepodids deeper than 10 m were predicted to successfully pass underneath barriers. The deep phenotype was the most abundant below 10 m and reached infestation pressures 3 times higher than that of the mean phenotype. In contrast, the shallow phenotype infestation pressure reached less than half that of the mean phenotype. These differences in relative fitness indicate that barriers can impose strong directional selection on the swimming behaviour of copepodids. The strength of this selection varied seasonally and geographically, with selection for the deep phenotype stronger in winter-spring and at coastal locations than in spring-summer and within fjords. These findings can be applied across farms to slow louse adaptation, by limiting barriers during situations of strong selection, although this must be balanced against trade-offs to short-term efficacy. More broadly, our study highli
- Published
- 2021
20. Using Biophysical Models to Improve Survey Efficiency for Cryptic Ectotherms
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Saleeba, K, Phillips, BL, O'Shea, M, Kearney, MR, Saleeba, K, Phillips, BL, O'Shea, M, and Kearney, MR
- Published
- 2020
21. Estimating the benefit of quarantine: eradicating invasive cane toads from islands
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Smart, AS, Tingley, R, Phillips, BL, Smart, AS, Tingley, R, and Phillips, BL
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Islands are increasingly used to protect endangered populations from the negative impacts of invasive species. Quarantine efforts on islands are likely to be undervalued in circumstances in which a failure incurs non-economic costs. One approach to ascribe monetary value to such efforts is by modeling the expense of restoring a system to its former state. Using field-based removal experiments on two different islands off northern Australia separated by > 400 km, we estimate cane toad densities, detection probabilities, and the resulting effort needed to eradicate toads from an island. We use these estimates to conservatively evaluate the financial benefit of cane toad quarantine across offshore islands prioritized for conservation management by the Australian federal government. We calculate density as animals per km of freshwater shoreline, and find striking concordance of density estimates across our two island study sites: a mean density of 352 [289, 466] adult toads per kilometre on one island, and a density of 341 [298, 390] on the second. Detection probability differed between our two study islands (Horan Island: 0.1 [0.07, 0.13]; Indian Island: 0.27 [0.22, 0.33]). Using a removal model and the financial costs incurred during toad removal, we estimate that eradicating cane toads would, on average, cost between $22 487 [$14 691, $34 480] (based on Horan Island) and $39 724 [$22 069, $64 001] AUD (Indian Island) per km of available freshwater shoreline. We estimate the remaining value of toad quarantine across islands that have been prioritized for conservation benefit within the toads’ predicted range, and find the net value of quarantine efforts to be $43.4 [28.4–66.6] – $76.7 [42.6–123.6] M depending on which island dataset is used to calibrate the model. We conservatively estimate the potential value of a mainland cane toad containment strategy – to prevent the spread of toads into the Pilbara Bioregion – to be $80 [52.6–123.4] – $142 [79.0–229.0] M.
- Published
- 2020
22. Training fails to elicit behavioral change in a marsupial suffering evolutionary loss of antipredator behaviors
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Jolly, CJ, Webb, JK, Gillespie, GR, Phillips, BL, Jolly, CJ, Webb, JK, Gillespie, GR, and Phillips, BL
- Abstract
© The Author(s) 2020. Attempts to reintroduce threatened species from ex situ populations (zoos or predator-free sanctuaries) regularly fail because of predation. When removed from their natural predators, animals may lose their ability to recognize predators and thus fail to adopt appropriate antipredator behaviors. Recently, northern quolls (Dasyurus hallucatus; Dasyuromorpha: Dasyuridae) conserved on a predator-free "island ark"for 13 generations were found to have no recognition of dingoes, a natural predator with which they had coevolved on mainland Australia for about 8,000 years. A subsequent reintroduction attempt using quolls acquired from this island ark failed due to predation by dingoes. In this study, we tested whether instrumental conditioning could be used to improve predator recognition in captive quolls sourced from a predator-free "island ark."We used a previously successful scent-recognition assay (a giving-up density experiment) to compare predator-scent recognition of captive-born island animals before and after antipredator training. Our training was delivered by pairing live predators (dingo and domestic dog) with an electrified cage floor in repeat trials such that, when the predators were present, foraging animals would receive a shock. Our training methodology did not result in any discernible change in the ability of quolls to recognize and avoid dingo scent after training. We conclude either that our particular training method was ineffective (though ethically permissible); or that because these quolls appear unable to recognize natural predators, predator recognition may be extremely difficult to impart in a captive setting given ethical constraints. Our results point to the difficulty of reinstating lost behaviors, and to the value of maintaining antipredator behaviors in conservation populations before they are lost.
- Published
- 2020
23. Farmed salmonids drive the abundance, ecology and evolution of parasitic salmon lice in Norway
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Dempster, T, primary, Overton, K, additional, Bui, S, additional, Stien, LH, additional, Oppedal, F, additional, Karlsen, Ø, additional, Coates, A, additional, Phillips, BL, additional, and Barrett, LT, additional
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- 2021
- Full Text
- View/download PDF
24. Infection in patchy populations: Contrasting pathogen invasion success and dispersal at varying times since host colonization
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Norgaard, LS, Phillips, BL, Hall, MD, Norgaard, LS, Phillips, BL, and Hall, MD
- Abstract
Repeated extinction and recolonization events generate a landscape of host populations that vary in their time since colonization. Within this dynamic landscape, pathogens that excel at invading recently colonized host populations are not necessarily those that perform best in host populations at or near their carrying capacity, potentially giving rise to divergent selection for pathogen traits that mediate the invasion process. Rarely, however, has this contention been empirically tested. Using Daphnia magna, we explored how differences in the colonization history of a host population influence the invasion success of different genotypes of the pathogen Pasteuria ramosa. By partitioning the pathogen invasion process into a series of individual steps, we show that each pathogen optimizes invasion differently when encountering host populations that vary in their time since colonization. All pathogen genotypes were more likely to establish successfully in recently colonized host populations, but the production of transmission spores was typically maximized in either the subsequent growth or stationary phase of host colonization. Integrating across the first three pathogen invasion steps (initial establishment, proliferation, and secondary infection) revealed that overall pathogen invasion success (and its variance) was, nonetheless, highest in recently colonized host populations. However, only pathogens that were slow to kill their host were able to maximize host-facilitated dispersal. This suggests that only a subset of pathogen genotypes-the less virulent and more dispersive-are more likely to encounter newly colonized host populations at the front of a range expansion or in metapopulations with high extinction rates. Our results suggest a fundamental trade-off for a pathogen between dispersal and virulence, and evidence for higher invasion success in younger host populations, a finding with clear implications for pathogen evolution in spatiotemporally dynamic setti
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- 2019
25. Forecasting species range dynamics with process-explicit models: matching methods to applications
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Early, R, Briscoe, NJ, Elith, J, Salguero-Gomez, R, Lahoz-Monfort, JJ, Camac, JS, Giljohann, KM, Holden, MH, Hradsky, BA, Kearney, MR, McMahon, SM, Phillips, BL, Regan, TJ, Rhodes, JR, Vesk, PA, Wintle, BA, Yen, JDL, Guillera-Arroita, G, Early, R, Briscoe, NJ, Elith, J, Salguero-Gomez, R, Lahoz-Monfort, JJ, Camac, JS, Giljohann, KM, Holden, MH, Hradsky, BA, Kearney, MR, McMahon, SM, Phillips, BL, Regan, TJ, Rhodes, JR, Vesk, PA, Wintle, BA, Yen, JDL, and Guillera-Arroita, G
- Abstract
Knowing where species occur is fundamental to many ecological and environmental applications. Species distribution models (SDMs) are typically based on correlations between species occurrence data and environmental predictors, with ecological processes captured only implicitly. However, there is a growing interest in approaches that explicitly model processes such as physiology, dispersal, demography and biotic interactions. These models are believed to offer more robust predictions, particularly when extrapolating to novel conditions. Many process-explicit approaches are now available, but it is not clear how we can best draw on this expanded modelling toolbox to address ecological problems and inform management decisions. Here, we review a range of process-explicit models to determine their strengths and limitations, as well as their current use. Focusing on four common applications of SDMs - regulatory planning, extinction risk, climate refugia and invasive species - we then explore which models best meet management needs. We identify barriers to more widespread and effective use of process-explicit models and outline how these might be overcome. As well as technical and data challenges, there is a pressing need for more thorough evaluation of model predictions to guide investment in method development and ensure the promise of these new approaches is fully realised.
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- 2019
26. Targeted gene flow and rapid adaptation in an endangered marsupial
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Kelly, E, Phillips, BL, Kelly, E, and Phillips, BL
- Abstract
Targeted gene flow is an emerging conservation strategy. It involves translocating individuals with favorable genes to areas where they will have a conservation benefit. The applications for targeted gene flow are wide-ranging but include preadapting native species to the arrival of invasive species. The endangered carnivorous marsupial, the northern quoll (Dasyurus hallucatus), has declined rapidly since the introduction of the cane toad (Rhinella marina), which fatally poisons quolls that attack them. There are, however, a few remaining toad-invaded quoll populations in which the quolls survive because they know not to eat cane toads. It is this toad-smart behavior we hope to promote through targeted gene flow. For targeted gene flow to be feasible, however, toad-smart behavior must have a genetic basis. To assess this, we used a common garden experiment, comparing offspring from toad-exposed and toad-naïve parents raised in identical environments, to determine whether toad-smart behavior is heritable. Offspring from toad-exposed populations were substantially less likely to eat toads than those with toad-naïve parents. Hybrid offspring showed similar responses to quolls with 2 toad-exposed parents, indicating the trait may be dominant. Together, these results suggest a heritable trait and rapid adaptive response in a small number of toad-exposed populations. Although questions remain about outbreeding depression, our results are encouraging for targeted gene flow. It should be possible to introduce toad-smart behavior into soon to be affected quoll populations.
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- 2019
27. Bangers and cash: baiting efficiency in a heterogeneous population
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Indigo, N, Smith, J, Webb, JK, Phillips, BL, Indigo, N, Smith, J, Webb, JK, and Phillips, BL
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- 2019
28. Anywhere but here: local conditions motivate dispersal in Daphnia
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Erm, P, Hall, MD, Phillips, BL, Erm, P, Hall, MD, and Phillips, BL
- Abstract
Dispersal is fundamental to population dynamics. However, it is increasingly apparent that, despite most models treating dispersal as a constant, many organisms make dispersal decisions based upon information gathered from the environment. Ideally, organisms would make fully informed decisions, with knowledge of both intra-patch conditions (conditions in their current location) and extra-patch conditions (conditions in alternative locations). Acquiring information is energetically costly, however, and extra-patch information will typically be costlier to obtain than intra-patch information. As a consequence, theory suggests that organisms will often make partially informed dispersal decisions, utilising intra-patch information only. We test this proposition in an experimental two-patch system using populations of the aquatic crustacean, Daphnia carinata. We manipulated conditions (food availability) in the population's home patch, and in its alternative patch. We found that D. carinata made use of intra-patch information (resource availability in the home patch induced a 10-fold increase in dispersal probability) but either ignored or were incapable of using of extra-patch information (resource availability in the alternative patch did not affect dispersal probability). We also observed a small apparent increase in dispersal in replicates with higher population densities, but this effect was smaller than the effect of resource constraint, and not found to be significant. Our work highlights the considerable influence that information can have on dispersal probability, but also that dispersal decisions will often be made in only a partially informed manner. The magnitude of the response we observed also adds to the growing chorus that condition-dependence may be a significant driver of variation in dispersal.
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- 2019
29. May the (selective) force be with you: Spatial sorting and natural selection exert opposing forces on limb length in an invasive amphibian
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Clarke, GS, Shine, R, Phillips, BL, Clarke, GS, Shine, R, and Phillips, BL
- Abstract
Spatial sorting on invasion fronts drives the evolution of dispersive phenotypes, and in doing so can push phenotypes in the opposite direction to natural selection. The invasion of cane toads (Rhinella marina) through tropical Australia has accelerated over recent decades because of the accumulation of dispersal-enhancing traits at the invasion front, driven by spatial sorting. One such trait is the length of the forelimbs: invasion-front toads have longer arms (relative to body length) in comparison with populations 10-20 years after invasion. Such a shift likely has fitness consequences: an increase of forearm length would decrease the strength with which a male could cling to a female during amplexus and so render such a male less competitive in competition for mates, compared to short-armed conspecifics. Our laboratory trials of attachment strength confirmed that males with relatively longer arms were easier to displace, and competition trials show higher duration of amplexus for males with shorter arms. Together with the sharp cline in limb length observed behind the invasion front, these results imply an opposition of selective forces: spatial sorting optimizes dispersal, but as this force wanes behind the invasion front, we see the primacy of natural selection reassert itself.
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- 2019
30. Bias averted: personality may not influence trappability
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Jolly, CJ, Webb, JK, Gillespie, GR, Hughes, NK, Phillips, BL, Jolly, CJ, Webb, JK, Gillespie, GR, Hughes, NK, and Phillips, BL
- Abstract
© 2019, Springer-Verlag GmbH Germany, part of Springer Nature. Abstract: If bold animals are more likely to be trapped than shy animals, we take a biased sample of personalities—a problem for behavioural research. Such a bias is problematic, also, for population estimation using mark-recapture models that assume homogeneity in detection probabilities. In this study, we investigated whether differences in boldness result in differences in detection probability in a native Australian rodent, the grassland melomys (Melomys burtoni). During a mark-recapture study of this species, we used modified open field tests to assess the boldness (via emergence, and interaction with a novel object) of melomys trapped on the last night of four trapping nights in each of two trapping sessions. Despite melomys showing repeatable variation in these behavioural traits, neither boldness nor emergence latency had an effect on detection probability, and we found no evidence that detection probability varied between individuals. This result suggests that any neophobia is experienced and resolved in individuals of this species on a scale of minutes, rather than the hours across which traps are made available each night. Our work demonstrates that personality-caused sampling bias may not be inevitable, even in situations where animals are required to respond to novelty to be detected, such as in baited traps. Heterogeneity in personality does not inevitably lead to heterogeneity in detection probability. Significance statement: Historically, passive traps were assumed a non-biased means of sampling animal populations. Increasingly behavioural ecologists suggest that personality traits, particularly individual boldness, may influence behaviour and, as a consequence, could result in sampling bias. Here, we present a comprehensive example of when animal personality has no effect on detection probability. Despite having distinct personalities, detection probabilities of a native Australian roden
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- 2019
31. Behavioural responses of an Australian colubrid snake (Dendrelaphis punctulatus) to a novel toxic prey item (the Cane Toad Rhinella marina)
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Llewelyn, J, Choyce, NC, Phillips, BL, Webb, JK, Pearson, DJ, Schwarzkopf, L, and Shine, R
- Subjects
integumentary system ,Ecology - Abstract
© 2018, Springer International Publishing AG, part of Springer Nature. The invasion of a toxic prey type can differentially affect closely related predator species. In Australia, the invasive Cane Toad (Rhinella marina) kills native anurophagous predators that cannot tolerate the toad’s toxins; but predators that are physiologically resistant (i.e., belong to lineages that entered Australia recently from Asia, where toads of other species are common) have been more resilient. In the current study, we examine the case of an Asian-derived predator lineage that relies on behavioural not physiological adaptations to deal with toads. Despite their Asian origins, Common Tree Snakes (Dendrelaphis punctulatus) are highly sensitive to toad toxins; yet this snake has not declined in abundance due to toads. We exposed captive (field-collected) snakes to toads of different sizes and ontogenetic stages, to quantify feeding responses and outcomes. Tree Snakes were less likely to attack toads than to attack native frogs, and rarely retained their hold on large toads. Tree Snakes ingested frogs of a wide range of body sizes but only ingested very small toads (< 1 g vs. up to 30 g for frogs). Behavioural responses were virtually identical between Tree Snakes from invaded versus yet-to-be-invaded areas, suggesting that preadaptation (from Asia) rather than adaptation (within Australia) is the key to successful utilisation of this novel but potentially toxic prey resource. Nonetheless, a previously-documented shift in relative head sizes of Tree Snakes coincident with toad invasion suggests that the ancestral behavioural tactic may have been reinforced by a recent morphological shift that further reduces maximal prey size, and hence the risk of fatal poisoning.
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- 2018
32. How many, and when? Optimising targeted gene flow for a step change in the environment
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Kelly, E. and Phillips, BL.
- Subjects
Gene Flow ,Conservation genetics ,0106 biological sciences ,Conservation of Natural Resources ,media_common.quotation_subject ,Survival of the fittest ,Outbreeding depression ,Population ,010603 evolutionary biology ,01 natural sciences ,Genome ,Cane toad ,03 medical and health sciences ,Quoll ,education ,Ecology, Evolution, Behavior and Systematics ,030304 developmental biology ,media_common ,0303 health sciences ,education.field_of_study ,biology ,Ecology ,010604 marine biology & hydrobiology ,Australia ,biology.organism_classification ,Population viability analysis ,Population model ,Evolutionary biology ,Threatened species ,Psychological resilience - Abstract
Targeted gene flow is an emerging conservation strategy that involves translocating individuals with particular traits to places where they are of benefit, thereby increasing a population’s evolutionary resilience. While the idea can work in theory, questions remain as to how best to implement it. Here, we vary timing of introduction and size of the introduced cohort to maximise our objective – survival of the recipient population’s genome. We demonstrate our approach using the northern quoll, an Australian marsupial predator threatened by the toxic cane toad. We highlight a general trade-off between maintaining a local genome and reducing population extinction risk, but show that key management levers can optimise this so that 100% of the population’s genome is preserved. In our case, any action was better than not acting at all (even with strong outbreeding depression), but the size of the benefit was sensitive to timing and size of the introduction.
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- 2018
33. Prognostic model to predict postoperative acute kidney injury in patients undergoing major gastrointestinal surgery based on a national prospective observational cohort study
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Nepogodiev, D, Walker, K, Glasbey, JC, Drake, TM, Borakati, A, Kamarajah, S, McLean, K, Khatri, C, Arulkumaran, N, Harrison, EM, Fitzgerald, JE, Cromwell, D, Prowle, J, Bhangu, A, Bath, MF, Claireaux, HA, Gundogan, B, Mohan, M, Deekonda, P, Kong, C, Joyce, H, Mcnamee, L, Woin, E, Burke, J, Bell, S, Duthie, F, Hughes, J, Pinkney, TD, Richards, T, Thomas, M, Dynes, K, Patel, P, Wigley, C, Suresh, R, Shaw, A, Klimach, S, Jull, P, Evans, D, Preece, R, Ibrahim, I, Manikavasagar, V, Brown, FS, Teo, R, Sim, DPY, Logan, AE, Barai, I, Amin, H, Suresh, S, Sethi, R, Bolton, W, Corbridge, O, Horne, L, Attalla, M, Morley, R, Hoskins, T, McAllister, R, Lee, S, Dennis, Y, Nixon, G, Heywood, E, Wilson, H, Ng, L, Samaraweera, S, Mills, A, Doherty, C, Belchos, J, Phan, V, Chouari, T, Gardner, T, Goergen, N, Hayes, JDB, MacLeod, CS, McCormack, R, McKinley, A, McKinstry, S, Milligan, W, Ooi, L, Rafiq, NM, Sammut, T, Sinclair, E, Smith, M, Baker, C, Boulton, APR, Collins, J, Copley, HC, Fearnhead, N, Fox, H, Mah, T, McKenna, J, Naruka, V, Nigam, N, Nourallah, B, Perera, S, Qureshi, A, Saggar, S, Sun, L, Wang, X, Yang, DD, Caroll, P, Doyle, C, Elangovan, S, Falamarzi, A, Perai, KG, Greenan, E, Jain, D, Lang-Orsini, M, Lim, S, O'Byrne, L, Ridgway, P, Van der Laan, S, Wong, J, Arthur, J, Barclay, J, Bradley, P, Edwin, C, Finch, E, Hayashi, E, Hopkins, M, Kelly, D, Kelly, M, McCartan, N, Ormrod, A, Pakenham, A, Hayward, J, Hitchen, C, Kishore, A, Martins, T, Philomen, J, Rao, R, Rickards, C, Burns, N, Copeland, M, Durand, C, Dyal, A, Ghaffar, A, Gidwani, A, Grant, M, Gribbon, C, Gruhn, A, Leer, M, Ahmad, K, Beattie, G, Beatty, M, Campbell, G, Donaldson, G, Graham, S, Holmes, D, Kanabar, S, Liu, H, McCann, C, Stewart, R, Vara, S, Ajibola-Taylor, O, Andah, EJE, Ani, C, Cabdi, NMO, Ito, G, Jones, M, Komoriyama, A, Titu, L, Basra, M, Gallogly, P, Harinath, G, Leong, SH, Pradhan, A, Siddiqui, I, Zaat, S, Ali, A, Galea, M, Looi, WL, Ng, JCK, Atkin, G, Azizi, A, Cargill, Z, China, Z, Elliot, J, Jebakumar, R, Lam, J, Mudalige, G, Onyerindu, C, Renju, M, Babu, VS, Hussain, M, Joji, N, Lovett, B, Mownah, H, Ali, B, Cresswell, B, Dhillon, AK, Dupaguntla, YS, Hungwe, C, Lowe-Zinola, JD, Tsang, JCH, Bevan, K, Cardus, C, Duggal, A, Hossain, S, McHugh, M, Scott, M, Chan, F, Evans, R, Gurung, E, Haughey, B, Jacob-Ramsdale, B, Kerr, M, Lee, J, McCann, E, O'Boyle, K, Reid, N, Hayat, F, Hodgson, S, Johnston, R, Jones, W, Khan, M, Linn, T, Long, S, Seetharam, P, Shaman, S, Smart, B, Anilkumar, A, Davies, J, Griffith, J, Hughes, B, Islam, Y, Kidanu, D, Mushaini, N, Qamar, I, Robinson, H, Schramm, M, Tan, CY, Apperley, H, Billyard, C, Blazeby, JM, Cannon, SP, Carse, S, Gopfert, A, Loizidou, A, Parkin, J, Sanders, E, Sharma, S, Slade, G, Telfer, R, Huppatz, IW, Worley, E, Chandramoorthy, L, Friend, C, Harris, L, Jain, P, Karim, MJ, Killington, K, McGillicuddy, J, Rafferty, C, Rahunathan, N, Rayne, T, Varathan, Y, Verma, N, Zanichelli, D, Arneill, M, Brown, F, Campbell, B, Crozier, L, Henry, J, McCusker, C, Prabakaran, P, Wilson, R, Asif, U, Connor, M, Dindyal, S, Math, N, Pagarkar, A, Saleem, H, Seth, I, Standfield, N, Swartbol, T, Adamson, R, Choi, JE, El Tokhy, O, Ho, W, Javaid, NR, Mehdi, AS, Menon, D, Plumptre, I, Sturrock, S, Turner, J, Warren, O, Crane, E, Ferris, B, Gadsby, C, Smallwood, J, Vipond, M, Wilson, V, Amarnath, T, Doshi, A, Gregory, C, Kandiah, K, Powell, B, Spoor, H, Toh, C, Vizor, R, Common, M, Dunleavy, K, Harris, S, Luo, C, Mesbah, Z, Kumar, AP, Redmond, A, Skulsky, S, Walsh, T, Daly, D, Deery, L, Epanomeritakis, E, Harty, M, Kane, D, Khan, K, Mackey, R, McConville, J, McGinnity, K, Ang, A, Kee, JY, Leung, E, Norman, S, Palaniappan, S, Sarathy, PP, Yeoh, T, Frost, J, Hazeldine, P, Jones, L, Karbowiak, M, Macdonald, C, Mutarambirwa, A, Omotade, A, Runkel, M, Ryan, G, Sawers, N, Searle, C, Vig, S, Ahmad, A, McGartland, R, Sim, R, Song, A, Wayman, J, Brown, R, Chang, LH, Concannon, K, Crilly, C, Arnold, TJ, Burgin, A, Cadden, F, Choy, CH, Coleman, M, Lim, D, Luk, J, Mahankali-Rao, P, Prudence-Taylor, AJ, Ramakrishnan, D, Russell, J, Fawole, A, Gohil, J, Green, B, Hussain, A, McMenamin, L, Tang, M, Azmi, F, Benchetrit, S, Cope, T, Haque, A, Harlinska, A, Holdsworth, R, Ivo, T, Martin, J, Nisar, T, Patel, A, Sasapu, K, Trevett, J, Vernet, G, Aamir, A, Bird, C, Durham-Hall, A, Gibson, W, Hartley, J, May, N, Maynard, V, Johnson, S, Wood, CM, O'Brien, M, Orbell, J, Stringfellow, TD, Tenters, F, Tresidder, S, Cheung, W, Grant, A, Tod, N, Bews-Hair, M, Lim, ZH, Lim, SW, Vella-Baldacchino, M, Auckburally, S, Chopada, A, Easdon, S, Goodson, R, McCurdie, F, Narouz, M, Radford, A, Rea, E, Taylor, O, Yu, T, Alfa-Wali, M, Amani, L, Auluck, I, Bruce, P, Emberton, J, Kumar, R, Lagzouli, N, Mehta, A, Murtaza, A, Raja, M, Dennahy, IS, Frew, K, Given, A, He, YY, Karim, MA, MacDonald, E, McDonald, E, McVinnie, D, Ng, SK, Pettit, A, Berthaume-Hawkins, SD, Charnley, R, Fenton, K, Jones, D, Murphy, C, Ng, JQ, Reehal, R, Seraj, SS, Shang, E, Tonks, A, White, P, Yeo, A, Chong, P, Gabriel, R, Patel, N, Richardson, E, Symons, L, Aubrey-Jones, D, Dawood, S, Dobrzynska, M, Faulkner, S, Griffiths, H, Mahmood, F, Perry, M, Power, A, Simpson, R, Brobbey, P, Burrows, A, Elder, P, Ganyani, R, Horseman, C, Hurst, P, Mann, H, Marimuthu, K, McBride, S, Pilsworth, E, Powers, N, Stanier, P, Innes, R, Kersey, T, Kopczynska, M, Langasco, N, Rajagopal, R, Atkins, B, Beasley, W, Lim, ZC, Gill, A, Ang, HL, Williams, H, Yogeswara, T, Carter, R, Fam, M, Fong, J, Latter, J, Long, M, Mackinnon, S, McKenzie, C, Osmanska, J, Raghuvir, V, Shafi, A, Tsang, K, Walker, L, Bountra, K, Coldicutt, O, Fletcher, D, Hudson, S, Iqbal, S, Bernal, TL, Martin, JWB, Moss-Lawton, F, Cardwell, A, Edgerton, K, Laws, J, Rai, A, Robinson, K, Waite, K, Ward, J, Youssef, H, Knight, C, Koo, PY, Lazarou, A, Stanger, S, Thorn, C, Triniman, MC, Botha, A, Boyles, L, Cumming, S, Deepak, S, Ezzat, A, Fowler, AJ, Gwozdz, AM, Hussain, SF, Khan, S, Li, H, Morrell, BL, Neville, J, Nitiahpapand, R, Pickering, O, Sagoo, H, Sharma, E, Welsh, K, Denley, S, Agarwal, M, Al-Saadi, N, Bhambra, R, Gupta, A, Jawad, ZAR, Jiao, LR, Mahir, G, Singagireson, S, Thoms, BL, Tseu, B, Wei, R, Yang, N, Britton, N, Leinhardt, D, Mahfooz, M, Palkhi, A, Price, M, Sheikh, S, Barker, M, Bowley, D, Cant, M, Datta, U, Farooqi, M, Lee, A, Morley, G, Amin, MN, Parry, A, Patel, S, Strang, S, Yoganayagam, N, Adlan, A, Chandramoorthy, S, Choudhary, Y, Das, K, Feldman, M, France, B, Grace, R, Puddy, H, Soor, P, Ali, M, Dhillon, P, Faraj, A, Gerard, L, Glover, M, Imran, H, Kim, S, Patrick, Y, Peto, J, Prabhudesai, A, Smith, R, Tang, A, Vadgama, N, Dhaliwal, R, Ecclestone, T, Harris, A, Ong, D, Patel, D, Philp, C, Stewart, E, Wang, L, Wong, E, Xu, Y, Ashaye, T, Fozard, T, Galloway, F, Kaptanis, S, Mistry, P, Nguyen, T, Olagbaiye, F, Osman, M, Philip, Z, Rembacken, R, Tayeh, S, Theodoropoulou, K, Herman, A, Lau, J, Saha, A, Trotter, M, Adeleye, O, Cave, D, Gunwa, T, Magalhaes, J, Makwana, S, Mason, R, Parish, M, Regan, H, Renwick, P, Roberts, G, Salekin, D, Sivakumar, C, Tariq, A, Liew, I, McDade, A, Stewart, D, Hague, M, Hudson-Peacock, N, Jackson, CES, James, F, Pitt, J, Walker, EY, Aftab, R, Ang, JJ, Anwar, S, Battle, J, Budd, E, Chui, J, Crook, H, Davies, P, Easby, S, Hackney, E, Ho, B, Imam, SZ, Rammell, J, Andrews, H, Perry, C, Schinle, P, Ahmed, P, Aquilina, T, Balai, E, Church, M, Cumber, E, Curtis, A, Davies, G, Dumann, E, Greenhalgh, S, Kim, P, King, S, Metcalfe, KHM, Passby, L, Redgrave, N, Soonawalla, Z, Waters, S, Zornoza, A, Gulzar, I, Hole, J, Hull, K, Ishaq, H, Karaj, J, Kelkar, A, Love, E, Thakrar, D, Vine, M, Waterman, A, Dib, NP, Francis, N, Hanson, M, Ingleton, R, Sadanand, KS, Sukirthan, N, Arnell, S, Ball, M, Bassam, N, Beghal, G, Chang, A, Dawe, V, George, A, Huq, T, Ikram, B, Kanapeckaite, L, Ramjas, D, Rushd, A, Sait, S, Serry, M, Yardimci, E, Capella, S, Chenciner, L, Episkopos, C, Karam, E, McCarthy, C, Moore-Kelly, W, Watson, N, Ahluwalia, V, Barnfield, J, Ben-Gal, O, Bloom, I, Gharatya, A, Khodatars, K, Merchant, N, Moonan, A, Moore, M, Patel, K, Spiers, H, Sundaram, K, Black, J, Chadwick, H, Huisman, L, Ingram, H, Martin, L, Metcalfe, M, Sangal, P, Seehra, J, Thatcher, A, Venturini, S, Whitcroft, I, Afzal, Z, Brown, S, Gani, A, Gomaa, A, Hussein, N, Oh, SY, Pazhaniappan, N, Sharkey, E, Sivagnanasithiyar, T, Williams, C, Yeung, J, Cruddas, L, Gurjar, S, Pau, A, Prakash, R, Randhawa, R, Chen, L, Eiben, I, Naylor, M, Osei-Bordom, D, Trenear, R, Bannard-Smith, J, Griffiths, N, Patel, BY, Saeed, F, Abdikadir, H, Bennett, M, Church, R, Clements, SE, Court, J, Delvi, A, Hubert, J, Macdonald, B, Mansour, F, Patel, RR, Perris, R, Small, S, Betts, A, Brown, N, Chong, A, Croitoru, C, Grey, A, Hickland, P, Ho, C, Hollington, D, McKie, L, Nelson, AR, Stewart, H, Eiben, P, Nedham, M, Ali, I, Brown, T, Hunt, C, Joyner, C, McAlinden, C, Rogers, D, Thachettu, A, Tyson, N, Vaughan, R, Yasin, T, Andrew, K, Bhamra, N, Leong, S, Mistry, R, Noble, H, Rashed, F, Walker, NR, Watson, L, Worsfold, M, Yarham, E, Arshad, A, Barmayehvar, B, Cato, L, Chan-lam, N, Do, V, Leong, A, Sheikh, Z, Zheleniakova, T, Coppel, J, Hussain, ST, Mahmood, R, Nourzaie, R, Sheik-Ali, S, Thomas, A, Alagappan, A, Ashour, R, Bains, H, Diamond, J, Gordon, J, Ibrahim, B, Khalil, M, Mittapalli, D, Neo, YN, Patil, P, Peck, FS, Reza, N, Swan, I, Whyte, M, Chaudhry, S, Hernon, J, Khawar, H, O'Brien, J, Pullinger, M, Rothnie, K, Ujjal, S, Bhatte, S, Curtis, J, Green, S, Mayer, A, Watkinson, G, Chapple, K, Hawthorne, T, Khaliq, M, Majkowski, L, Malik, TAM, Mclauchlan, K, En, BNW, O'Connor, T, Parton, S, Robinson, SD, Saat, M, Shurovi, BN, Varatharasasingam, K, Ward, AE, Behranwala, K, Bertelli, M, Cohen, J, Duff, F, Fafemi, O, Gupta, R, Manimaran, M, Mayhew, J, Peprah, D, Wong, MHY, Farmer, N, Houghton, C, Kandhari, N, Ladha, D, Mayes, J, McLennan, F, Panahi, P, Seehra, H, Agrawal, R, Ahmed, I, Ali, S, Birkinshaw, F, Choudhry, M, Gokani, S, Harrogate, S, Jamal, S, Nawrozzadeh, F, Swaray, A, Szczap, A, Warusavitarne, J, Abdalla, M, Asemota, N, Cullum, R, Hartley, M, Maxwell-Armstrong, C, Mulvenna, C, Phillips, J, Yule, A, Ahmed, L, Clement, KD, Craig, N, Elseedawy, E, Gorman, D, Kane, L, Livie, J, Livie, V, Moss, E, Naasan, A, Ravi, F, Shields, P, Zhu, Y, Archer, M, Cobley, H, Dennis, R, Downes, C, Guevel, B, Lamptey, E, Murray, H, Radhakrishnan, A, Saravanabavan, S, Sardar, M, Shaw, C, Tilliridou, V, Wright, R, Ye, W, Alturki, N, Helliwell, R, Jones, E, Lambotharan, S, Scott, K, Sivakumar, R, Victor, L, Boraluwe-Rallage, H, Froggatt, P, Haynes, S, Hung, YMA, Keyte, A, Matthews, L, Evans, E, Haray, P, John, I, Mathivanan, A, Morgan, L, Oji, O, Okorocha, C, Rutherford, A, Stageman, N, Tsui, A, Whitham, R, Amoah-Arko, A, Cecil, E, Dietrich, A, Fitzpatrick, H, Guy, C, Hair, J, Hilton, J, Jawad, L, McAleer, E, Taylor, Z, Yap, J, Akhbari, M, Debnath, D, Dhir, T, Elbuzidi, M, Elsaddig, M, Glace, S, Khawaja, H, Koshy, R, Lal, K, Lobo, L, McDermott, A, Meredith, J, Qamar, MA, Vaidya, A, Acquaah, F, Barfi, L, Carter, N, Gnanappiragasam, D, Ji, C, Kaminski, F, Lawday, S, Mackay, K, Sulaiman, SK, Webb, R, Ananthavarathan, P, Dalal, F, Farrar, E, Hashemi, R, Hossain, M, Jiang, J, Kiandee, M, Lex, J, Mason, L, Matthews, JH, McGeorge, E, Modhwadia, S, Pinkney, T, Radotra, A, Rickard, L, Rodman, L, Sales, A, Tan, KL, Bachi, A, Bajwa, DS, Brown, LR, Butler, A, Calciu, A, Davies, E, Gardner, I, Girdlestone, T, Ikogho, O, Keelan, G, O'Loughlin, P, Tam, J, Elias, J, Ngaage, M, Thompson, J, Bristow, S, Brock, E, Davis, H, Pantelidou, M, Sathiyakeerthy, A, Singh, K, Chaudhry, A, Dickson, G, Glen, P, Gregoriou, K, Hamid, H, Mclean, A, Mehtaji, P, Neophytou, G, Potts, S, Belgaid, DR, Durno, J, Ghailan, N, Henshaw, V, Nazir, UR, Omar, I, Riley, BJ, Roberts, J, Smart, G, Van Winsen, K, Bhatti, A, Chan, M, D'Auria, M, Keshvala, C, Michaelidou, M, Simmonds, L, Smith, C, Wimalathasan, A, Abbas, J, Cairns, C, Chin, YR, Connelly, A, Moug, S, Nair, A, Svolkinas, D, Coe, P, Subar, D, Wang, H, Zaver, V, Brayley, J, Cookson, P, Cunningham, L, Gaukroger, A, Ho, M, Hough, A, King, J, O'Hagan, D, Widdison, A, Brown, B, Chavan, A, Francis, S, Hare, L, Lund, J, Malone, N, Mavi, B, McIlwaine, A, Rangarajan, S, Abuhussein, N, Campbell, HS, Daniels, J, Fitzgerald, I, Mansfield, S, Pendrill, A, Robertson, D, Smart, YW, Teng, T, Yates, J, Belgaumkar, A, Katira, A, Kossoff, J, Kukran, S, Laing, C, Mathew, B, Mohamed, T, Myers, S, Novell, R, Phillips, BL, Turlejski, T, Turner, S, Varcada, M, Warren, L, Wynell-Mayow, W, Linley-Adams, L, Osborn, G, Saunders, M, Spencer, R, Srikanthan, M, Tailor, S, Tullett, A, Al-Masri, S, Carr, G, Ebhogiaye, O, Heng, S, Manivannan, S, Manley, J, McMillan, LE, Peat, C, Phillips, B, Thomas, S, Whewell, H, Williams, G, Bienias, A, Cope, EA, Courquin, GR, Day, L, Garner, C, Gimson, A, Harris, C, Markham, K, Moore, T, Nadin, T, Phillips, C, Subratty, SM, Brown, K, Dada, J, Durbacz, M, Filipescu, T, Harrison, E, Kennedy, ED, Khoo, E, Kremel, D, Lyell, I, Pronin, S, Tummon, R, Ventre, C, Walls, L, Wootton, E, Akhtar, A, El-Sawy, D, Farooq, M, Gaddah, M, Katsaiti, I, Khadem, N, Leong, K, Williams, I, Chean, CS, Chudek, D, Desai, H, Ellerby, N, Hammad, A, Malla, S, Murphy, B, Oshin, O, Popova, P, Rana, S, Ward, T, Abbott, TEF, Akpenyi, O, Edozie, F, El Matary, R, English, W, Jeyabaladevan, S, Morgan, C, Naidu, V, Nicholls, K, Peroos, S, Sansome, S, Torrance, HD, Townsend, D, Brecher, J, Fung, H, Kazmi, Z, Outlaw, P, Pursnani, K, Ramanujam, N, Razaq, A, Sattar, M, Sukumar, S, Tan, TSE, Chohan, K, Dhuna, S, Haq, T, Kirby, S, Lacy-Colson, J, Logan, P, Malik, Q, McCann, J, Mughal, Z, Sadiq, S, Sharif, I, Shingles, C, Simon, A, Burnage, S, Chan, SSN, Craig, ARJ, Duffield, J, Dutta, A, Eastwood, M, Iqbal, F, Mahmood, W, Patel, C, Qadeer, A, Robinson, A, Rotundo, A, Schade, A, Slade, RD, De Freitas, M, Kinnersley, H, McDowell, E, Moens-Lecumberri, S, Ramsden, J, Rockall, T, Wiffen, L, Wright, S, Bruce, C, Francois, V, Hamdan, K, Limb, C, Lunt, AJ, Manley, L, Marks, M, Phillips, CFE, Agnew, CJF, Barr, CJ, Benons, N, Hart, SJ, Kandage, D, Krysztopik, R, Mahalingam, P, Mock, J, Rajendran, S, Stoddart, MT, Clements, B, Gillespie, H, McDougall, R, Murray, C, O'Loane, R, Periketi, S, Tan, S, Amoah, R, Bhudia, R, Dudley, B, Gilbert, A, Griffiths, B, Khan, H, McKigney, N, Roberts, B, Samuel, R, Seelarbokus, A, Stubbing-Moore, A, Thompson, G, Williams, P, Ahmed, N, Akhtar, R, Chandler, E, Chappelow, I, Gil, H, Gower, T, Kale, A, Lingam, G, Rutler, L, Sellahewa, C, Sheikh, A, Stringer, H, Taylor, R, Aglan, H, Ashraf, MR, Choo, S, Das, E, Epstein, J, Gentry, R, Mills, D, Poolovadoo, Y, Ward, N, Bull, K, Cole, A, Hack, J, Khawari, S, Lake, C, Mandishona, T, Perry, R, Sleight, S, Sultan, S, Thornton, T, Williams, S, Arif, T, Castle, A, Chauhan, P, Chesner, R, Eilon, T, Kambasha, C, Lock, L, Loka, T, Mohammad, F, Motahariasl, S, Roper, L, Sadhra, SS, Toma, T, Wadood, Q, Yip, J, Ainger, E, Busti, S, Cunliffe, L, Flamini, T, Gaffing, S, Moorcroft, C, Peter, M, Simpson, L, Stokes, E, Stott, G, Wilson, J, York, J, Yousaf, A, Brown, M, Goaman, A, Hodgson, B, Ijeomah, A, Iroegbu, U, Kaur, G, Lowe, C, Mahmood, S, Sattar, Z, Sen, P, Szuman, A, Abbas, N, Al-Ausi, M, Anto, N, Bhome, R, Eccles, L, Elliott, J, Hughes, EJ, Jones, A, Karunatilleke, AS, Knight, JS, Manson, CCF, Mekhail, I, Michaels, L, Noton, TM, Okenyi, E, Reeves, T, Yasin, IH, Banfield, DA, Harris, R, Mason-Apps, C, Roe, T, Sandhu, J, Shafiq, N, Stickler, E, Tam, JP, Williams, LM, Ainsworth, P, Boualbanat, Y, Doull, C, Egan, E, Evans, L, Hassanin, K, Ninkovic-Hall, G, Odunlami, W, Shergill, M, Traish, M, Cummings, D, Kershaw, S, Ong, J, Reid, F, Toellner, H, Alwandi, A, Amer, M, George, D, Haynes, K, Hughes, K, Peakall, L, Premakumar, Y, Punjabi, N, Ramwell, A, Sawkins, H, Ashwood, J, Baker, A, Baron, C, Bhide, I, Blake, E, De Cates, C, Esmail, R, Hosamuddin, H, Kapp, J, Nguru, N, Thomson, F, Ahmed, H, Aishwarya, G, Al-Huneidi, R, Aziz, R, Burke, D, Clarke, B, Kausar, A, Maskill, D, Mecia, L, Myers, L, Smith, ACD, Walker, G, Wroe, N, Donohoe, C, Gibbons, D, Jordan, P, Keogh, C, Kiely, A, Lalor, P, McCrohan, M, Powell, C, Foley, MP, Reynolds, J, Silke, E, Thorpe, O, Kong, JTH, White, C, Ali, Q, Dalrymple, J, Ge, Y, Luo, RS, Paine, H, Paraskeva, B, Parker, L, Pillai, K, Salciccioli, J, Selvadurai, S, Sonagara, V, Springford, LR, Tan, L, Appleton, S, Leadholm, N, Zhang, Y, Ahern, D, Cotter, M, Cremen, S, Durrigan, T, Flack, V, Hrvacic, N, Jones, H, Jong, B, Keane, K, O'Connell, PR, O'Sullivan, J, Pek, G, Shirazi, S, Barker, C, Brown, A, Carr, W, Chen, Y, Guillotte, C, Harte, J, Kokayi, A, Lau, K, McFarlane, S, Morrison, S, Broad, J, Kenefick, N, Makanji, D, Printz, V, Saito, R, Thomas, O, Breen, H, Kirk, S, Kong, CH, O'Kane, A, Eddama, M, Engledow, A, Freeman, SK, Frost, A, Goh, C, Lee, G, Poonawala, R, Suri, A, Taribagil, P, Brown, H, Christie, S, Dean, S, Gravell, R, Haywood, E, Holt, F, Rabiu, R, Roscoe, HW, Shergill, S, Sriram, A, Sureshkumar, A, Tan, LC, Tanna, A, Vakharia, A, Bhullar, S, Brannick, S, Dunne, E, Frere, M, Kerin, M, Kumar, KM, Pratumsuwan, T, Quek, R, Salman, M, Van Den Berg, N, Wong, C, Ahluwalia, J, Bagga, R, Borg, CM, Calabria, C, Draper, A, Farwana, M, Khan, A, Mazza, M, Pankin, G, Sait, MS, Sandhu, N, Virani, N, Woodhams, K, Croghan, N, Ghag, S, Hogg, G, Ismail, O, John, N, Nadeem, K, Naqi, M, Noe, SM, Sharma, A, Begum, F, Best, R, Collishaw, A, Glasbey, J, Golding, D, Gwilym, B, Harrison, P, Jackman, T, Lewis, N, Luk, YL, Porter, T, Potluri, S, Stechman, M, Tate, S, Thomas, D, Walford, B, Auld, F, Bleakley, A, Johnston, S, Jones, C, Khaw, J, Milne, S, O'Neill, S, Singh, KKR, Swan, A, Thorley, N, Yalamarthi, S, Yin, ZD, Balian, V, Bana, R, Clark, K, Livesey, C, McLachlan, G, Mohammad, M, Pranesh, N, Richards, C, Ross, F, Sajid, M, Brooke, M, Francombe, J, Gresly, J, Hutchinson, S, Kerrigan, K, Matthews, E, Nur, S, Parsons, L, Sandhu, A, Vyas, M, White, F, Zulkifli, A, Zuzarte, L, Al-Mousawi, A, Arya, J, Azam, S, Yahaya, AA, Gill, K, Hallan, R, Hathaway, C, Leptidis, I, McDonagh, L, Mitrasinovic, S, Mushtaq, N, Pang, N, Peiris, GB, Rinkoff, S, Chan, L, Christopher, E, Farhan-Alanie, MMH, Gonzalez-Ciscar, A, Graham, CJ, Lim, H, McLean, KA, Paterson, HM, Rogers, A, Roy, C, Rutherford, D, Smith, F, Zubikarai, G, Al-Khudairi, R, Bamford, M, Chang, M, Cheng, J, Hedley, C, Joseph, R, Mitchell, B, Rothwell, L, Siddiqui, A, Smith, J, Taylor, K, Wright, OW, Baryan, HK, Boyd, G, Conchie, H, Cox, L, Gardner, S, Hill, N, Krishna, K, Lakin, F, Scotcher, S, Alberts, J, Asad, M, Barraclough, J, Campbell, A, Marshall, D, Wakeford, W, Cronbach, P, D'Souza, F, Gammeri, E, Houlton, J, Hall, M, Kethees, A, Patel, R, Perera, M, Shaid, M, Webb, E, Beattie, S, Chadwick, M, El-Taji, O, Haddad, S, Mann, M, Patel, M, Popat, K, Rimmer, L, Riyat, H, Smith, H, Anandarajah, C, Cipparrone, M, Desai, K, Gao, C, Goh, ET, Howlader, M, Jeffreys, N, Karmarkar, A, Mathew, G, Mukhtar, H, Ozcan, E, Renukanthan, A, Sarens, N, Sinha, C, Woolley, A, Bogle, R, Komolafe, O, Loo, F, Waugh, D, Zeng, R, Crewe, A, Mathias, J, Owen, A, Prior, A, Saunders, I, Crilly, L, McKeon, J, Ubhi, HK, Adeogun, A, Carr, R, Davison, C, Devalia, S, Hayat, A, Karsan, RB, Osborne, C, Weegenaar, C, Wijeyaratne, M, Babatunde, F, Barnor-Ahiaku, E, Chitsabesan, P, Dixon, O, Hall, N, Ilenkovan, N, Mackrell, T, Nithianandasivam, N, Orr, J, Palazzo, F, Saad, M, Sandland-Taylor, L, Sherlock, J, Ashdown, T, Chandler, S, Garsaa, T, Lloyd, J, Loh, SY, Ng, S, Perkins, C, Powell-Chandler, A, and Underhill, R
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COMPLICATIONS ,Science & Technology ,RENAL-FAILURE ,STARSurg Collaborative ,MORTALITY ,RISK-FACTORS ,Surgery ,Life Sciences & Biomedicine - Abstract
Background Acute illness, existing co‐morbidities and surgical stress response can all contribute to postoperative acute kidney injury (AKI) in patients undergoing major gastrointestinal surgery. The aim of this study was prospectively to develop a pragmatic prognostic model to stratify patients according to risk of developing AKI after major gastrointestinal surgery. Methods This prospective multicentre cohort study included consecutive adults undergoing elective or emergency gastrointestinal resection, liver resection or stoma reversal in 2‐week blocks over a continuous 3‐month period. The primary outcome was the rate of AKI within 7 days of surgery. Bootstrap stability was used to select clinically plausible risk factors into the model. Internal model validation was carried out by bootstrap validation. Results A total of 4544 patients were included across 173 centres in the UK and Ireland. The overall rate of AKI was 14·2 per cent (646 of 4544) and the 30‐day mortality rate was 1·8 per cent (84 of 4544). Stage 1 AKI was significantly associated with 30‐day mortality (unadjusted odds ratio 7·61, 95 per cent c.i. 4·49 to 12·90; P < 0·001), with increasing odds of death with each AKI stage. Six variables were selected for inclusion in the prognostic model: age, sex, ASA grade, preoperative estimated glomerular filtration rate, planned open surgery and preoperative use of either an angiotensin‐converting enzyme inhibitor or an angiotensin receptor blocker. Internal validation demonstrated good model discrimination (c‐statistic 0·65). Discussion Following major gastrointestinal surgery, AKI occurred in one in seven patients. This preoperative prognostic model identified patients at high risk of postoperative AKI. Validation in an independent data set is required to ensure generalizability.
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- 2018
34. Ureteric Stricture following Pediatric Dual En-Bloc Renal Transplantation
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Phillips, BL, primary, Forman, CJ, additional, and Banga, NR, additional
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- 2018
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35. Using connectivity to identify climatic drivers of local adaptation
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Coulson, T, Macdonald, SL, Llewelyn, J, Phillips, BL, Coulson, T, Macdonald, SL, Llewelyn, J, and Phillips, BL
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Understanding the climatic drivers of local adaptation is vital. Such knowledge is not only of theoretical interest but is critical to inform management actions under climate change, such as assisted translocation and targeted gene flow. Unfortunately, there are a vast number of potential trait-environment combinations, and simple relationships between trait and environment are ambiguous: representing either plastic or evolved variation. Here, we show that by incorporating connectivity as an index of gene flow, we can differentiate trait-environment relationships reflecting genetic variation vs. phenotypic plasticity. In this way, we rapidly shorten the list of trait-environment combinations that are of significance. Our analysis of an existing data set on geographic variation in a tropical lizard shows that we can effectively rank climatic variables by the strength of their role in local adaptation. The promise of our method is a rapid and general approach to identifying the environmental drivers of local adaptation.
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- 2018
36. Invasion history alters the behavioural consequences of immune system activation in cane toads
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Ardia, D, Brown, GP, Holden, D, Shine, R, Phillips, BL, Ardia, D, Brown, GP, Holden, D, Shine, R, and Phillips, BL
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Acute activation of the immune system often initiates a suite of behavioural changes. These "sickness behaviours"-involving lethargy and decreased activity-may be particularly costly on invasion fronts, where evolutionary pressures on dispersal favour individuals that move large distances. We used a combination of field and laboratory studies to compare sickness behaviours of cane toads from populations differing in invasion history. To do this we stimulated immune system activation by injecting lipopolysaccharide (LPS) to mimic bacterial infection. We predicted that LPS would result in less severe sickness behaviour in toads from range-edge populations because they had undergone selection for rapid and sustained dispersal (activities in conflict with lethargy and decreased activity). Contrary to our prediction, LPS injection caused a greater reduction in dispersal-relevant traits in invasion-front individuals than in conspecifics from the range-core. Our data suggest that the rapid invasion of cane toads through tropical Australia has seen an evolutionary shift in the magnitude of sickness behaviour elicited by pathogen infection. The increased sickness behaviour among range-edge toads suggests a shift away from pathogen tolerance (seen in range-core populations) towards resistance to pathogen attack. But as a consequence, when pathogens do become successfully established, toads from invasion-front populations may have less capacity to tolerate their ill-effects.
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- 2018
37. The perils of paradise: An endangered species conserved on an island loses antipredator behaviours within 13 generations
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Jolly, CJ, Webb, JK, Phillips, BL, Jolly, CJ, Webb, JK, and Phillips, BL
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© 2018 The Author(s) Published by the Royal Society. All rights reserved. When imperilled by a threatening process, the choice is often made to conserve threatened species on offshore islands that typically lack the full suite of mainland predators. While keeping the species extant, this releases the conserved population from predator-driven natural selection. Antipredator traits are no longer maintained by natural selection and may be lost. It is implicitly assumed that such trait loss will happen slowly, but there are few empirical tests. In Australia, northern quolls (Dasyurus hallucatus) were moved onto a predator-free offshore island in 2003 to protect the species from the arrival of invasive cane toads on the mainland. We compared the antipredator behaviours of wild-caught quolls from the predator-rich mainland with those from this predator-free island. We compared the responses of both wild-caught animals and their captive-born offspring, to olfactory cues of two of their major predators (feral cats and dingoes). Wild-caught, mainland quolls recognized and avoided predator scents, as did their captive-born offspring. Island quolls, isolated from these predators for only 13 generations, showed no recognition or aversion to these predators. This study suggests that predator aversion behaviours can be lost very rapidly, and that this may make a population unsuitable for reintroduction to a predator-rich mainland.
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- 2018
38. How many, and when? Optimising targeted gene flow for a step change in the environment
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Kelly, E., primary and Phillips, BL., additional
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- 2018
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39. Peripheral Isolates as Sources of Adaptive Diversity under Climate Change
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Macdonald, SL, Llewelyn, J, Moritz, C, Phillips, BL, Macdonald, SL, Llewelyn, J, Moritz, C, and Phillips, BL
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- 2017
40. Thermoregulatory behaviour explains countergradient variation in the upper thermal limit of a rainforest skink
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Llewelyn, J, Macdonald, S, Hatcher, A, Moritz, C, Phillips, BL, Llewelyn, J, Macdonald, S, Hatcher, A, Moritz, C, and Phillips, BL
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The vulnerability of a terrestrial ectotherm to high environmental temperatures depends on the animal's thermal physiology and thermoregulatory behaviour. These variables – environment, physiology, and behaviour – interact with each other, complicating assessment of species vulnerability to global warming. We previously uncovered a counterintuitive pattern in rainforest sunskinks Lampropholis coggeri: a negative relationship between their critical thermal maximum (CTmax) and the temperature of their environment. Could this result be explained by a three‐way interaction between environment, physiology, and behaviour? Here we find that sunskink thermal preference is correlated positively with CTmax, but, importantly, skinks from hotter environments prefer lower temperatures than conspecifics from cooler environments. In an acclimation experiment, we find that CTmax is plastic and shifts in alignment with acclimation temperature. We also found heritable variation in this trait in a common garden study, but this variation was small relative to the plastic shifts observed in CTmax. Thus, our previous observation of a negative correlation between field CTmax and temperature is explained, at least in part, by the lizard's thermoregulatory behaviour: lizards from hot environments preferentially choose cool microenvironments, and their physiology acclimates to these cooler experienced temperatures. Our results suggest that behavioural adjustments to the environment can produce countergradient variation in physiological traits. More broadly, our work underscores the importance of interactions between environment, behaviour, and physiology in ectotherms. Understanding these interactions will be crucial in assessing vulnerability to climate change.
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- 2017
41. Going feral: Time and propagule pressure determine range expansion of Asian house geckos into natural environments
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Barnett, LK, Phillips, BL, Hoskin, CJ, Barnett, LK, Phillips, BL, and Hoskin, CJ
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Upon establishment in a new area, invasive species may undergo a prolonged period of relatively slow population growth and spread, known as a lag period. Lag periods are, apparently, common in invasions, but studies of the factors that facilitate subsequent expansions are lacking in natural systems. We used 10 semi‐independent invasions of the Asian house gecko (Hemidactylus frenatus) to investigate which factors facilitate expansion of this human‐associated species across the urban–woodland interface. We conducted 590 surveys over 12 months on 10 transects running from the urban edge to 2 km into adjacent natural woodland. We recorded H. frenatus out to 2 km from the urban edge on nine of 10 transects, and at high abundance at many woodland sites. Body size, body condition, sex ratio and proportion of gravid females did not vary with distance from the urban edge, suggesting viable, self‐sustaining populations in natural habitats. The extent of expansion was, however, strongly dependent on propagule pressure (the abundance of H. frenatus at the urban edge), and time (time since H. frenatus established in the urban area). The size of the urban area and the structure of the surrounding environment did not impact invasion. Our results show that an invasive species that is deemed ‘human‐associated’ over most of its range is invading natural habitats, and propagule pressure strongly controls the lag time in this system, a finding that echoes results for establishment probability at larger scales.
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- 2017
42. Cost and feasibility of a barrier to halt the spread of invasive cane toads in arid Australia: incorporating expert knowledge into model-based decision-making
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Bieber, C, Southwell, D, Tingley, R, Bode, M, Nicholson, E, Phillips, BL, Bieber, C, Southwell, D, Tingley, R, Bode, M, Nicholson, E, and Phillips, BL
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Summary 1. Active engagement with practitioners is a crucial component of model‐based decision‐making in conservation management; it can assist with data acquisition, improve models and help narrow the ‘knowing–doing’ gap. 2. We worked with practitioners of one of the worst invasive species in Australia, the cane toad Rhinella marina, to revise a model that estimates the effectiveness of landscape barriers to contain spread. The original model predicted that the invasion could be contained by managing artificial watering points on pastoral properties, but was initially met with scepticism by practitioners, in part due to a lack of engagement during model development. 3. We held a workshop with practitioners and experts in cane toad biology. Using structured decision‐making, we elicited concerns about the original model, revised its structure, updated relevant input data, added an economic component and found the most cost‐effective location for a barrier across a range of fixed budgets and management scenarios. We then conducted scenario analyses to test the sensitivity of management decisions to model revisions. 4. We found that toad spread could be contained for all of the scenarios tested. Our modelling suggests a barrier could cost $4·5 M (2015 AUD) over 50 years for the most likely landscape scenario. The incorporation of practitioner knowledge into the model was crucial. As well as improving engagement, when we incorporated practitioner concerns (particularly regarding the effects of irrigation and dwellings on toad spread), we found a different location for the optimal barrier compared to a previously published study (Tingley et al. 2013). 5. Synthesis and applications. Through engagement with practitioners, we turned an academic modelling exercise into a decision‐support tool that integrated local information, and considered more realistic scenarios and constraints. Active engagement with practitioners led to productive revisions of a model that estimates th
- Published
- 2017
43. New weapons in the toad toolkit: A review of methods to control and mitigate the biodiversity impacts of invasive cane toads (rhinella marina)
- Author
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Tingley, R, Ward-Fear, G, Schwarzkopf, L, Greenlees, MJ, Phillips, BL, Brown, G, Clulow, S, Webb, J, Capon, R, Sheppard, A, Strive, T, Tizard, M, Shine, R, Tingley, R, Ward-Fear, G, Schwarzkopf, L, Greenlees, MJ, Phillips, BL, Brown, G, Clulow, S, Webb, J, Capon, R, Sheppard, A, Strive, T, Tizard, M, and Shine, R
- Abstract
© 2017 by The University of Chicago Press. All rights reserved. Our best hope of developing innovative methods to combat invasive species is likely to come from the study of high-profile invaders that have attracted intensive research not only into control, but also basic biology. Here we illustrate that point by reviewing current thinking about novel ways to control one of the world’s most well-studied invasions: that of the cane toad in Australia. Recently developed methods for population suppression include more effective traps based on the toad’s acoustic and pheromonal biology. New tools for containing spread include surveillance technologies (e.g., eDNA sampling and automated call detectors), as well as landscape-level barriers that exploit the toad’s vulnerability to desiccation— a strategy that could be significantly enhanced through the introduction of sedentary, rangecore genotypes ahead of the invasion front. New methods to reduce the ecological impacts of toads include conditioned taste aversion in free-ranging predators, gene banking, and targeted gene flow. Lastly, recent advances in gene editing and gene drive technology hold the promise of modifying toad phenotypes in ways that may facilitate control or buffer impact. Synergies between these approaches hold great promise for novel and more effective means to combat the toad invasion and its consequent impacts on biodiversity.
- Published
- 2017
44. Structure model of synthetic amorphous calcium carbonate
- Author
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Reeder, RJ, Goodwin, AL, Michel, FM, Phillips, BL, Keen, DA, and Dove, MT
- Published
- 2016
45. After the games are over: life-history trade-offs drive dispersal attenuation following range expansion
- Author
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Perkins, TA, Boettiger, C, Phillips, BL, Perkins, TA, Boettiger, C, and Phillips, BL
- Abstract
Increased dispersal propensity often evolves on expanding range edges due to the Olympic Village effect, which involves the fastest and fittest finding themselves together in the same place at the same time, mating, and giving rise to like individuals. But what happens after the range's leading edge has passed and the games are over? Although empirical studies indicate that dispersal propensity attenuates following range expansion, hypotheses about the mechanisms driving this attenuation have not been clearly articulated or tested. Here, we used a simple model of the spatiotemporal dynamics of two phenotypes, one fast and the other slow, to propose that dispersal attenuation beyond preexpansion levels is only possible in the presence of trade-offs between dispersal and life-history traits. The Olympic Village effect ensures that fast dispersers preempt locations far from the range's previous limits. When trade-offs are absent, this preemptive spatial advantage has a lasting impact, with highly dispersive individuals attaining equilibrium frequencies that are strictly higher than their introduction frequencies. When trade-offs are present, dispersal propensity decays rapidly at all locations. Our model's results about the postcolonization trajectory of dispersal evolution are clear and, in principle, should be observable in field studies. We conclude that empirical observations of postcolonization dispersal attenuation offer a novel way to detect the existence of otherwise elusive trade-offs between dispersal and life-history traits.
- Published
- 2016
46. Behavioural responses of reptile predators to invasive cane toads in tropical Australia
- Author
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Pearson, DJ, Webb, JK, Greenlees, MJ, Phillips, BL, Bedford, GS, Brown, GP, Thomas, J, and Shine, R
- Subjects
integumentary system ,Ecology ,urogenital system - Abstract
The ecological impact of an invasive species can depend on the behavioural responses of native fauna to the invader. For example, the greatest risk posed by invasive cane toads (Rhinella marinaBufonidae) in tropical Australia is lethal poisoning of predators that attempt to eat a toad; and thus, a predator's response to a toad determines its vulnerability. We conducted standardized laboratory trials on recently captured (toad-naïve) predatory snakes and lizards, in advance of the toad invasion front as it progressed through tropical Australia. Responses to a live edible-sized toad differed strongly among squamate species. We recorded attacks (and hence, predator mortality) in scincid, agamid and varanid lizards, and in elapid, colubrid and pythonid snakes. Larger-bodied predators were at greater risk, and some groups (elapid snakes and varanid lizards) were especially vulnerable. However, feeding responses differed among species within families and within genera. Some taxa (notably, many scincid and agamid lizards) do not attack toads; and many colubrid snakes either do not consume toads, or are physiologically resistant to the toad's toxins. Intraspecific variation in responses means that even in taxa that apparently are unaffected by toad invasion at the population level, some individual predators nonetheless may be fatally poisoned by invasive cane toads. © 2013 Ecological Society of Australia.
- Published
- 2014
47. Directional dispersal has not evolved during the cane toad invasion
- Author
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Van Damme, R, Brown, GP, Phillips, BL, Shine, R, Van Damme, R, Brown, GP, Phillips, BL, and Shine, R
- Abstract
The ability to disperse along a consistent compass heading strongly affects the rate and efficiency of an animal's displacement, and thus is under selection at the expanding edge of a biological invasion. We used radiotelemetry to assess whether the dispersal direction of cane toads (Rhinella marina) changed as a function of time since invasion, by comparing (i) toads at a single site monitored annually for 10 years subsequent to toad arrival; (ii) toads collected from sites across the species' invaded range in Australia, and radiotracked at a common site; and (iii) the offspring of those transported toads that were reared in captivity under common‐garden conditions. The first of these data sets showed non‐random directionality, indicating strong spatial sorting operating on this trait: toads moved in a north‐westerly direction for the first 6 years post‐invasion, but in random directions thereafter. Despite the evidence for trait sorting, no consistent directionality was seen in toads relocated from populations with different invasion histories nor in their offspring. Why do we see no evolutionary shifts? Dispersal directionality of the offspring was not correlated with that of their parents, arguing against a genetic basis to this behavioural trait. Thus, while an expanding invasion front creates an evolutionary pressure for animals to move in a specific direction, evolution of this trait has not occurred in this system because directionality is not heritable. The observed north‐westerly movements of toads at the invasion front were due to simple density differentials: in the first few years, most toads arriving at our study site originated from earlier‐colonized (and hence denser) populations to the south‐east.
- Published
- 2015
48. Chemoreception and mating behaviour of a tropical Australian skink
- Author
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Scott, ML, Llewelyn, J, Higgie, M, Hoskin, CJ, Pike, K, Phillips, BL, Scott, ML, Llewelyn, J, Higgie, M, Hoskin, CJ, Pike, K, and Phillips, BL
- Published
- 2015
49. Identifying the time scale of synchronous movement: a study on tropical snakes
- Author
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Lindstrom, T, Phillips, BL, Brown, GP, Shine, R, Lindstrom, T, Phillips, BL, Brown, GP, and Shine, R
- Abstract
BACKGROUND: Individual movement is critical to organismal fitness and also influences broader population processes such as demographic stochasticity and gene flow. Climatic change and habitat fragmentation render the drivers of individual movement especially critical to understand. Rates of movement of free-ranging animals through the landscape are influenced both by intrinsic attributes of an organism (e.g., size, body condition, age), and by external forces (e.g., weather, predation risk). Statistical modelling can clarify the relative importance of those processes, because externally-imposed pressures should generate synchronous displacements among individuals within a population, whereas intrinsic factors should generate consistency through time within each individual. External and intrinsic factors may vary in importance at different time scales. RESULTS: In this study we focused on daily displacement of an ambush-foraging snake from tropical Australia (the Northern Death Adder Acanthophis praelongus), based on a radiotelemetric study. We used a mixture of spectral representation and Bayesian inference to study synchrony in snake displacement by phase shift analysis. We further studied autocorrelation in fluctuations of displacement distances as "one over f noise". Displacement distances were positively autocorrelated with all considered noise colour parameters estimated as >0. We show how the methodology can reveal time scales of particular interest for synchrony and found that for the analysed data, synchrony was only present at time scales above approximately three weeks. CONCLUSION: We conclude that the spectral representation combined with Bayesian inference is a promising approach for analysis of movement data. Applying the framework to telemetry data of A. praelongus, we were able to identify a cut-off time scale above which we found support for synchrony, thus revealing a time scale where global external drivers have a larger impact on the movement beha
- Published
- 2015
50. Stability of the wMel Wolbachia Infection following Invasion into Aedes aegypti Populations
- Author
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Rasgon, JL, Hoffmann, AA, Iturbe-Ormaetxe, I, Callahan, AG, Phillips, BL, Billington, K, Axford, JK, Montgomery, B, Turley, AP, O'Neill, SL, Rasgon, JL, Hoffmann, AA, Iturbe-Ormaetxe, I, Callahan, AG, Phillips, BL, Billington, K, Axford, JK, Montgomery, B, Turley, AP, and O'Neill, SL
- Abstract
The wMel infection of Drosophila melanogaster was successfully transferred into Aedes aegypti mosquitoes where it has the potential to suppress dengue and other arboviruses. The infection was subsequently spread into two natural populations at Yorkeys Knob and Gordonvale near Cairns, Queensland in 2011. Here we report on the stability of the infection following introduction and we characterize factors influencing the ongoing dynamics of the infection in these two populations. While the Wolbachia infection always remained high and near fixation in both locations, there was a persistent low frequency of uninfected mosquitoes. These uninfected mosquitoes showed weak spatial structure at both release sites although there was some clustering around two areas in Gordonvale. Infected females from both locations showed perfect maternal transmission consistent with patterns previously established pre-release in laboratory tests. After >2 years under field conditions, the infection continued to show complete cytoplasmic incompatibility across multiple gonotrophic cycles but persistent deleterious fitness effects, suggesting that host effects were stable over time. These results point to the stability of Wolbachia infections and their impact on hosts following local invasion, and also highlight the continued persistence of uninfected individuals at a low frequency most likely due to immigration.
- Published
- 2014
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