17 results on '"Philip Barnette"'
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2. Vaccination with immune complexes modulates the elicitation of functional antibodies against HIV-1
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Catarina E. Hioe, Xiaomei Liu, Andrew N. Banin, Daniel W. Heindel, Jéromine Klingler, Priyanka G. Rao, Christina C. Luo, Xunqing Jiang, Shilpi Pandey, Tracy Ordonez, Philip Barnette, Maxim Totrov, Jiang Zhu, Arthur Nádas, Susan Zolla-Pazner, Chitra Upadhyay, Xiaoying Shen, Xiang-Peng Kong, and Ann J. Hessell
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HIV-1 vaccine ,HIV-1 Env ,antibody ,immune complex (IC) ,virus neutralization ,ADCP ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionNeutralizing antibodies (Abs) are one of the immune components required to protect against viral infections. However, developing vaccines capable of eliciting neutralizing Abs effective against a broad array of HIV-1 isolates has been an arduous challenge.ObjectiveThis study sought to test vaccines aimed to induce Abs against neutralizing epitopes at the V1V2 apex of HIV-1 envelope (Env).MethodsFour groups of rabbits received a DNA vaccine expressing the V1V2 domain of the CRF01_AE A244 strain on a trimeric 2J9C scaffold (V1V2-2J9C) along with a protein vaccine consisting of an uncleaved prefusion-optimized A244 Env trimer with V3 truncation (UFO-BG.ΔV3) or a V1V2-2J9C protein and their respective immune complexes (ICs). These IC vaccines were made using 2158, a V1V2-specific monoclonal Ab (mAb), which binds the V2i epitope in the underbelly region of V1V2 while allosterically promoting the binding of broadly neutralizing mAb PG9 to its V2 apex epitope in vitro.ResultsRabbit groups immunized with the DNA vaccine and uncomplexed or complexed UFO-BG.ΔV3 proteins (DNA/UFO-UC or IC) displayed similar profiles of Env- and V1V2-binding Abs but differed from the rabbits receiving the DNA vaccine and uncomplexed or complexed V1V2-2J9C proteins (DNA/V1V2-UC or IC), which generated more cross-reactive V1V2 Abs without detectable binding to gp120 or gp140 Env. Notably, the DNA/UFO-UC vaccine elicited neutralizing Abs against some heterologous tier 1 and tier 2 viruses from different clades, albeit at low titers and only in a fraction of animals, whereas the DNA/V1V2-UC or IC vaccines did not. In comparison with the DNA/UFO-UC group, the DNA/UFO-IC group showed a trend of higher neutralization against TH023.6 and a greater potency of V1V2-specific Ab-dependent cellular phagocytosis (ADCP) but failed to neutralize heterologous viruses.ConclusionThese data demonstrate the capacity of V1V2-2J9C-encoding DNA vaccine in combination with UFO-BG.ΔV3, but not V1V2-2J9C, protein vaccines, to elicit homologous and heterologous neutralizing activities in rabbits. The elicitation of neutralizing and ADCP activities was modulated by delivery of UFO-BG.ΔV3 complexed with V2i mAb 2158.
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- 2023
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3. Evidence for the Role of a Second Fc-Binding Receptor in Placental IgG Transfer in Nonhuman Primates
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Yvonne J. Rosenberg, Tracy Ordonez, Urjeet S. Khanwalkar, Philip Barnette, Shilpi Pandey, Iara M. Backes, Claire E. Otero, Benjamin S. Goldberg, Andrew R. Crowley, David A. Leib, Mariya B. Shapiro, Xiaoming Jiang, Lori A. Urban, Jonathan Lees, Ann J. Hessell, Sallie Permar, Nancy L. Haigwood, and Margaret E. Ackerman
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plant and mammalian antibodies ,primates ,mice ,placental transfer ,FcRn ,FcγR ,Microbiology ,QR1-502 - Abstract
ABSTRACT Transplacental transfer of maternal antibodies provides the fetus and newborn with passive protection against infectious diseases. While the role of the highly conserved neonatal Fc receptor (FcRn) in transfer of IgG in mammals is undisputed, recent reports have suggested that a second receptor may contribute to transport in humans. We report poor transfer efficiency of plant-expressed recombinant HIV-specific antibodies, including engineered variants with high FcRn affinity, following subcutaneous infusion into rhesus macaques close to parturition. Unexpectedly, unlike those derived from mammalian tissue culture, plant-derived antibodies were essentially unable to cross macaque placentas. This defect was associated with poor Fcγ receptor binding and altered Fc glycans and was not recapitulated in mice. These results suggest that maternal-fetal transfer of IgG across the three-layer primate placenta may require a second receptor and suggest a means of providing maternal antibody treatments during pregnancy while avoiding fetal harm. IMPORTANCE This study compared the ability of several human HIV envelope-directed monoclonal antibodies produced in plants with the same antibodies produced in mammalian cells for their ability to cross monkey and mouse placentas. We found that the two types of antibodies have comparable transfer efficiencies in mice, but they are differentially transferred across macaque placentas, consistent with a two-receptor IgG transport model in primates. Importantly, plant-produced monoclonal antibodies have excellent binding characteristics for human FcRn receptors, permitting desirable pharmacokinetics in humans. The lack of efficient transfer across the primate placenta suggests that therapeutic plant-based antibody treatments against autoimmune diseases and cancer could be provided to the mother while avoiding transfer and preventing harm to the fetus.
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- 2023
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4. Phagocytosis by an HIV antibody is associated with reduced viremia irrespective of enhanced complement lysis
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David A. Spencer, Benjamin S. Goldberg, Shilpi Pandey, Tracy Ordonez, Jérémy Dufloo, Philip Barnette, William F. Sutton, Heidi Henderson, Rebecca Agnor, Lina Gao, Timothée Bruel, Olivier Schwartz, Nancy L. Haigwood, Margaret E. Ackerman, and Ann J. Hessell
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Science - Abstract
While antibodies neutralize HIV via Fab recognition of viral surface antigens, antibody Fc domains mediate effector functions, including antibody-dependent cellular phagocytosis (ADCP) and cytotoxicity (ADCC), and complement (C') activity. Here, Spencer et al. modify bNAb 10E8v4 to enhance C'-mediated potency in SHIV challenged rhesus macaques to probe its function in protection, showing that in the absence of neutralization, enhancing C' activities in vitro adds no value toward reducing viremia in either blood or tissue.
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- 2022
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5. Differential V2-directed antibody responses in non-human primates infected with SHIVs or immunized with diverse HIV vaccines
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Svenja Weiss, Vincenza Itri, Ruimin Pan, Xunqing Jiang, Christina C. Luo, Lynn Morris, Delphine C. Malherbe, Philip Barnette, Jeff Alexander, Xiang-Peng Kong, Nancy L. Haigwood, Ann J. Hessell, Ralf Duerr, and Susan Zolla-Pazner
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Science - Abstract
Here the authors show that an HIV vaccine in non-human primates that focuses antibodies on the V1V2 region of gp120 is superior to infection or immunization with whole envelope vaccines for inducing V1V2 antibodies with anti-viral functions that correlate with protection.
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- 2022
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6. Effects of persistent modulation of intestinal microbiota on SIV/HIV vaccination in rhesus macaques
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Nichole R. Klatt, Courtney Broedlow, Jessica M. Osborn, Andrew T. Gustin, Sandra Dross, Megan A. O’Connor, Ernesto Coronado, Philip Barnette, Tiffany Hensley-McBain, Alexander S. Zevin, Roshell Muir, Alexander Roederer, Solomon Wangari, Naoto Iwayama, Chul Y. Ahrens, Jeremy Smedley, Cassandra Moats, Rebecca M. Lynch, Elias K. Haddad, Nancy L. Haigwood, Deborah H. Fuller, and Jennifer A. Manuzak
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Immunologic diseases. Allergy ,RC581-607 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract An effective vaccine to prevent HIV transmission has not yet been achieved. Modulation of the microbiome via probiotic therapy has been suggested to result in enhanced mucosal immunity. Here, we evaluated whether probiotic therapy could improve the immunogenicity and protective efficacy of SIV/HIV vaccination. Rhesus macaques were co-immunized with an SIV/HIV DNA vaccine via particle-mediated epidermal delivery and an HIV protein vaccine administered intramuscularly with Adjuplex™ adjuvant, while receiving daily oral Visbiome® probiotics. Probiotic therapy alone led to reduced frequencies of colonic CCR5+ and CCR6+ CD4+ T cells. Probiotics with SIV/HIV vaccination led to similar reductions in colonic CCR5+ CD4+ T cell frequencies. SIV/HIV-specific T cell and antibody responses were readily detected in the periphery of vaccinated animals but were not enhanced with probiotic treatment. Combination probiotics and vaccination did not impact rectal SIV/HIV target populations or reduce the rate of heterologous SHIV acquisition during the intrarectal challenge. Finally, post-infection viral kinetics were similar between all groups. Thus, although probiotics were well-tolerated when administered with SIV/HIV vaccination, vaccine-specific responses were not significantly enhanced. Additional work will be necessary to develop more effective strategies of microbiome modulation in order to enhance mucosal vaccine immunogenicity and improve protective immune responses.
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- 2021
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7. CD4+ T Cells Are Dispensable for Induction of Broad Heterologous HIV Neutralizing Antibodies in Rhesus Macaques
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Sanghita Sarkar, David A. Spencer, Philip Barnette, Shilpi Pandey, William F. Sutton, Madhubanti Basu, Reuben E. Burch, John D. Cleveland, Alexander F. Rosenberg, Javier Rangel-Moreno, Michael C. Keefer, Ann J. Hessell, Nancy L. Haigwood, and James J. Kobie
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HIV - human immunodeficiency virus ,vaccine ,antibody ,CD4+ T cell ,B cell ,rhesus ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Induction of broadly neutralizing antibodies (bNAbs) is a major goal for HIV vaccine development. HIV envelope glycoprotein (Env)-specific bNAbs isolated from HIV-infected individuals exhibit substantial somatic hypermutation and correlate with T follicular helper (Tfh) responses. Using the VC10014 DNA-protein co-immunization vaccine platform consisting of gp160 plasmids and gp140 trimeric proteins derived from an HIV-1 infected subject that developed bNAbs, we determined the characteristics of the Env-specific humoral response in vaccinated rhesus macaques in the context of CD4+ T cell depletion. Unexpectedly, both CD4+ depleted and non-depleted animals developed comparable Tier 1 and 2 heterologous HIV-1 neutralizing plasma antibody titers. There was no deficit in protection from SHIV challenge, no diminution of titers of HIV Env-specific cross-clade binding antibodies, antibody dependent cellular phagocytosis, or antibody-dependent complement deposition in the CD4+ depleted animals. These collective results suggest that in the presence of diminished CD4+ T cell help, HIV neutralizing antibodies were still generated, which may have implications for developing effective HIV vaccine strategies.
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- 2021
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8. A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML
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Lia Gore, Timothy J. Triche, Jason E. Farrar, Daniel Wai, Christophe Legendre, Gerald C. Gooden, Winnie S. Liang, John Carpten, David Lee, Frank Alvaro, Margaret E. Macy, Carola Arndt, Philip Barnette, Todd Cooper, Laura Martin, Aru Narendran, Jessica Pollard, Soheil Meshinchi, Jessica Boklan, Robert J. Arceci, and Bodour Salhia
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AML ,Epigenetics ,Pediatrics ,Pharmacokinetics ,Pharmacodynamics ,DNA methylation ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Decitabine is a deoxycytidine nucleoside derivative inhibitor of DNA-methyltransferases, which has been studied extensively and is approved for myelodysplastic syndrome in adults but with less focus in children. Accordingly, we conducted a phase 1 multicenter, randomized, open-label study to evaluate decitabine pre-treatment before standard induction therapy in children with newly diagnosed AML to assess safety and tolerability and explore a number of biologic endpoints. Results Twenty-four patients were fully assessable for all study objectives per protocol (10 in Arm A = epigenetic priming induction, 14 in Arm B = standard induction). All patients experienced neutropenia and thrombocytopenia. The most common grade 3 and 4 non-hematologic adverse events observed were gastrointestinal toxicities and hypophosphatemia. Plasma decitabine PK were similar to previously reported adult data. Overall CR/CRi was similar for the two arms. MRD negativity at end-induction was 85% in Arm A versus 67% in Arm B patients. DNA methylation measured in peripheral blood over the course of treatment tracked with blast clearance and matched marrow aspirates at day 0 and day 21. Unlike end-induction marrow analyses, promoter methylation in blood identified an apparent reversal of response in the lone treatment failure, 1 week prior to the patient’s marrow aspirate confirming non-response. Decitabine-induced effects on end-induction (day 35–43 following initiation of treatment) marrows in Arm A were reflected by changes in DNA methylation in matched paired marrow diagnostic aspirates. Conclusions This first-in-pediatrics trial demonstrates that decitabine prior to standard combination chemotherapy is feasible and well tolerated in children with newly diagnosed AML. Pre-treatment with decitabine may represent a newer therapeutic option for pediatric AML, especially as it appears to induce important epigenetic alterations. The novel biological correlates studied in this trial offer a clinically relevant window into disease progression and remission. Additional studies are needed to definitively assess whether decitabine can enhance durability responses in children with AML. Trial registration NCT01177540
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- 2017
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9. Complement contributes to antibody-mediated protection against repeated SHIV challenge
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Benjamin S. Goldberg, David A. Spencer, Shilpi Pandey, Tracy Ordonez, Philip Barnette, Yun Yu, Lina Gao, Jérémy Dufloo, Timothée Bruel, Olivier Schwartz, Margaret E. Ackerman, Ann J. Hessell, Dartmouth College [Hanover], Oregon Health and Science University [Portland] (OHSU), Virus et Immunité - Virus and immunity (CNRS-UMR3569), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Cité (UPCité), École Doctorale Bio Sorbonne Paris Cité [Paris] (ED562 - BioSPC), Université Sorbonne Paris Cité (USPC)-Université Paris Cité (UPCité), Vaccine Research Institute [Créteil, France] (VRI), Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), and This work was supported by the following grants: R01 AI129801, P51 OD011092, R01 AI131975, and U42 OD023038-03.
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Multidisciplinary ,[SDV.IMM.IMM]Life Sciences [q-bio]/Immunology/Immunotherapy - Abstract
International audience; The first clinical efficacy trials of a broadly neutralizing antibody (bNAb) resulted in less benefit than expected and suggested that improvements are needed to prevent HIV infection. While considerable effort has focused on optimizing neutralization breadth and potency, it remains unclear whether augmenting the effector functions elicited by broadly neutralizing antibodies (bNAbs) may also improve their clinical potential. Among these effector functions, complement-mediated activities, which can culminate in the lysis of virions or infected cells, have been the least well studied. Here, functionally modified variants of the second-generation bNAb 10-1074 with ablated and enhanced complement activation profiles were used to examine the role of complement-associated effector functions. When administered prophylactically against simian-HIV challenge in rhesus macaques, more bNAb was required to prevent plasma viremia when complement activity was eliminated. Conversely, less bNAb was required to protect animals from plasma viremia when complement activity was enhanced. These results suggest that complement-mediated effector functions contribute to in vivo antiviral activity, and that their engineering may contribute to the further improvements in the efficacy of antibody-mediated prevention strategies.
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- 2023
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10. Polyfunctional Tier 2–Neutralizing Antibodies Cloned following HIV-1 Env Macaque Immunization Mirror Native Antibodies in a Human Donor
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Philip Barnette, Benjamin S. Goldberg, Margaret E. Ackerman, Tracy Cheever, Gunilla B. Karlsson Hedestam, Heidi Henderson, William F. Sutton, Ann J. Hessell, James J. Kobie, Shilpi Pandey, D. Noah Sather, David A. Spencer, Nancy L. Haigwood, Delphine C. Malherbe, Monika Adori, Nicholas Dambrauskas, and Néstor Vázquez Bernat
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THP-1 Cells ,Immunology ,Immunoglobulin Variable Region ,Somatic hypermutation ,HIV Infections ,HIV Antibodies ,Gp41 ,Macaque ,Neutralization ,Epitope ,Cell Line ,Affinity maturation ,Epitopes ,03 medical and health sciences ,0302 clinical medicine ,Viral Envelope Proteins ,Viral envelope ,biology.animal ,Animals ,Humans ,Immunology and Allergy ,Immunotherapy and Vaccines ,AIDS Vaccines ,Binding Sites ,biology ,Vaccination ,env Gene Products, Human Immunodeficiency Virus ,Antibodies, Monoclonal ,Antibodies, Neutralizing ,Macaca mulatta ,Virology ,HIV-1 ,biology.protein ,Immunization ,Antibody ,030215 immunology - Abstract
Vaccine efforts to combat HIV are challenged by the global diversity of viral strains and shielding of neutralization epitopes on the viral envelope glycoprotein trimer. Even so, the isolation of broadly neutralizing Abs from infected individuals suggests the potential for eliciting protective Abs through vaccination. This study reports a panel of 58 mAbs cloned from a rhesus macaque (Macaca mulatta) immunized with envelope glycoprotein immunogens curated from an HIV-1 clade C–infected volunteer. Twenty mAbs showed neutralizing activity, and the strongest neutralizer displayed 92% breadth with a median IC50 of 1.35 μg/ml against a 13-virus panel. Neutralizing mAbs predominantly targeted linear epitopes in the V3 region in the cradle orientation (V3C) with others targeting the V3 ladle orientation (V3L), the CD4 binding site (CD4bs), C1, C4, or gp41. Nonneutralizing mAbs bound C1, C5, or undetermined conformational epitopes. Neutralization potency strongly correlated with the magnitude of binding to infected primary macaque splenocytes and to the level of Ab-dependent cellular cytotoxicity, but did not predict the degree of Ab-dependent cellular phagocytosis. Using an individualized germline gene database, mAbs were traced to 23 of 72 functional IgHV alleles. Neutralizing V3C Abs displayed minimal nucleotide somatic hypermutation in the H chain V region (3.77%), indicating that relatively little affinity maturation was needed to achieve in-clade neutralization breadth. Overall, this study underscores the polyfunctional nature of vaccine-elicited tier 2–neutralizing V3 Abs and demonstrates partial reproduction of the human donor’s humoral immune response through nonhuman primate vaccination.
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- 2021
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11. Effects of persistent modulation of intestinal microbiota on SIV/HIV vaccination in rhesus macaques
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Andrew T. Gustin, Jessica M. Osborn, Philip Barnette, Alexander S. Zevin, Rebecca M. Lynch, Tiffany Hensley-McBain, Elias K. Haddad, Jeremy Smedley, Chul Y. Ahrens, Naoto Iwayama, Deborah H. Fuller, Nancy L. Haigwood, Alex Roederer, Solomon Wangari, Cassandra Moats, Megan A. O'Connor, Sandra Dross, Jennifer A. Manuzak, Nichole R. Klatt, Roshell Muir, Courtney Broedlow, and Ernesto Coronado
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0301 basic medicine ,Colon ,animal diseases ,medicine.medical_treatment ,T cell ,Immunology ,Heterologous ,Article ,law.invention ,03 medical and health sciences ,Probiotic ,0302 clinical medicine ,Immune system ,law ,Medicine ,Pharmacology (medical) ,Microbiome ,RC254-282 ,Pharmacology ,business.industry ,Microbiota ,Immunogenicity ,Rectum ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,virus diseases ,RC581-607 ,Vaccination ,030104 developmental biology ,Infectious Diseases ,medicine.anatomical_structure ,Preclinical research ,Immunologic diseases. Allergy ,business ,Adjuvant ,HIV infections ,030215 immunology - Abstract
An effective vaccine to prevent HIV transmission has not yet been achieved. Modulation of the microbiome via probiotic therapy has been suggested to result in enhanced mucosal immunity. Here, we evaluated whether probiotic therapy could improve the immunogenicity and protective efficacy of SIV/HIV vaccination. Rhesus macaques were co-immunized with an SIV/HIV DNA vaccine via particle-mediated epidermal delivery and an HIV protein vaccine administered intramuscularly with Adjuplex™ adjuvant, while receiving daily oral Visbiome® probiotics. Probiotic therapy alone led to reduced frequencies of colonic CCR5+ and CCR6+ CD4+ T cells. Probiotics with SIV/HIV vaccination led to similar reductions in colonic CCR5+ CD4+ T cell frequencies. SIV/HIV-specific T cell and antibody responses were readily detected in the periphery of vaccinated animals but were not enhanced with probiotic treatment. Combination probiotics and vaccination did not impact rectal SIV/HIV target populations or reduce the rate of heterologous SHIV acquisition during the intrarectal challenge. Finally, post-infection viral kinetics were similar between all groups. Thus, although probiotics were well-tolerated when administered with SIV/HIV vaccination, vaccine-specific responses were not significantly enhanced. Additional work will be necessary to develop more effective strategies of microbiome modulation in order to enhance mucosal vaccine immunogenicity and improve protective immune responses.
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- 2021
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12. Virus Control in Vaccinated Rhesus Macaques Is Associated with Neutralizing and Capturing Antibodies against the SHIV Challenge Virus but Not with V1V2 Vaccine-Induced Anti-V2 Antibodies Alone
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Delphine C. Malherbe, David A. Spencer, Nancy L. Haigwood, Ralf Duerr, Liuzhe Li, Yongzhao Shao, Ruth Hunegnaw, Marjorie Robert-Guroff, Xunqing Jiang, Miroslaw K. Gorny, Ann J. Hessell, Xiao-Hong Wang, Johannes S. Gach, Christina C. Luo, Philip Barnette, David C. Montefiori, William F. Sutton, Donald N. Forthal, Shilpi Pandey, Celia C. LaBranche, and Michael Tuen
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Male ,viruses ,Simian Acquired Immunodeficiency Syndrome ,Peptide ,HIV Infections ,Antibodies, Viral ,Immunogenicity, Vaccine ,0302 clinical medicine ,Immunology and Allergy ,Viral ,Neutralizing ,chemistry.chemical_classification ,AIDS Vaccines ,biology ,Simian immunodeficiency virus ,virus diseases ,Viral Load ,Immunogenicity ,Titer ,Infectious Diseases ,HIV/AIDS ,Simian Immunodeficiency Virus ,Female ,Antibody ,Infection ,Viral load ,Biotechnology ,Phagocytosis ,Immunology ,Heterologous ,Article ,Virus ,Antibodies ,Vaccine Related ,03 medical and health sciences ,Animals ,Humans ,Gene Products ,Vaccine Related (AIDS) ,env ,Animal ,Prevention ,Vaccine trial ,Antibody-Dependent Cell Cytotoxicity ,Gene Products, env ,Antibodies, Neutralizing ,Virology ,Macaca mulatta ,Disease Models, Animal ,Good Health and Well Being ,chemistry ,Disease Models ,biology.protein ,Immunization ,Vaccine ,030215 immunology - Abstract
The role of vaccine-induced anti-V2 Abs was tested in three protection experiments in rhesus macaques. In an experiment using immunogens similar to those in the RV144 vaccine trial (Anti-envelope [Env]), nine rhesus macaques were coimmunized with gp16092TH023 DNA and SIV gag and gp120A244 and gp120MN proteins. In two V2-focused experiments (Anti-V2 and Anti-V2 Mucosal), nine macaques in each group were immunized with V1V292TH023 DNA, V1V2A244 and V1V2CasaeA2 proteins, and cyclic V2CaseA2 peptide. DNA and protein immunogens, formulated in Adjuplex, were given at 0, 4, 12, and 20 weeks, followed by intrarectal SHIVBaL.P4 challenges. Peak plasma viral loads (PVL) of 106–107 copies/ml developed in all nine sham controls. Overall, PVL was undetectable in one third of immunized macaques, and two animals tightly controlled the virus with the Anti-V2 Mucosal vaccine strategy. In the Anti-Env study, Abs that captured or neutralized SHIVBaL.P4 inversely correlated with PVL. Conversely, no correlation with PVL was found in the Anti-V2 experiments with nonneutralizing plasma Abs that only captured virus weakly. Titers of Abs against eight V1V2 scaffolds and cyclic V2 peptides were comparable between controllers and noncontrollers as were Ab-dependent cellular cytotoxicity and Ab-dependent cell-mediated virus inhibition activities against SHIV-infected target cells and phagocytosis of gp120-coated beads. The Anti-Env experiment supports the role of vaccine-elicited neutralizing and nonneutralizing Abs in control of PVL. However, the two V2-focused experiments did not support a role for nonneutralizing V2 Abs alone in controlling PVL, as neither Ab-dependent cellular cytotoxicity, Ab-dependent cell-mediated virus inhibition, nor phagocytosis correlated inversely with heterologous SHIVBaL.P4 infection.
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- 2021
13. A multicenter, randomized study of decitabine as epigenetic priming with induction chemotherapy in children with AML
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Laura Martin, David W. Lee, John D. Carpten, Aru Narendran, Philip Barnette, Winnie S. Liang, Soheil Meshinchi, Todd M. Cooper, Bodour Salhia, Frank Alvaro, Robert J. Arceci, Daniel H. Wai, Lia Gore, Jessica Pollard, Margaret E. Macy, Jessica Boklan, Christophe Legendre, Jason E. Farrar, Timothy J. Triche, Gerald C. Gooden, and Carola A.S. Arndt
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0301 basic medicine ,Male ,Oncology ,lcsh:Medicine ,Pediatrics ,Epigenesis, Genetic ,law.invention ,chemistry.chemical_compound ,0302 clinical medicine ,Randomized controlled trial ,AML ,law ,Child ,Promoter Regions, Genetic ,Genetics (clinical) ,Etoposide ,0303 health sciences ,DNA methylation ,Cytarabine ,Combination chemotherapy ,Induction Chemotherapy ,3. Good health ,Leukemia, Myeloid, Acute ,Treatment Outcome ,Tolerability ,Child, Preschool ,030220 oncology & carcinogenesis ,Azacitidine ,Female ,Deoxycytidine ,Epigenetics ,medicine.drug ,medicine.medical_specialty ,Adolescent ,lcsh:QH426-470 ,Decitabine ,Neutropenia ,03 medical and health sciences ,Internal medicine ,Genetics ,medicine ,Humans ,Pharmacokinetics ,Adverse effect ,Molecular Biology ,030304 developmental biology ,business.industry ,Research ,Daunorubicin ,lcsh:R ,Infant ,Induction chemotherapy ,medicine.disease ,Clinical trial ,lcsh:Genetics ,030104 developmental biology ,chemistry ,Pharmacodynamics ,Immunology ,business ,Developmental Biology - Abstract
BackgroundDecitabine is a deoxycytidine nucleoside derivative inhibitor of DNA-methyltransferases, which has been studied extensively and is approved for myelodysplastic syndrome in adults but with less focus in children. Accordingly, we conducted a phase 1 multicenter, randomized, open-label study to evaluate decitabine pre-treatment before standard induction therapy in children with newly diagnosed AML to assess safety and tolerability and explore a number of biologic endpoints.ResultsTwenty-four patients were fully assessable for all study objectives per protocol (10 in Arm A, 14 in Arm B). All patients experienced neutropenia and thrombocytopenia. The most common grade 3 and 4 non-hematologic adverse events observed were gastrointestinal toxicities and hypophosphatemia. Plasma decitabine PK were similar to previously reported adult data. Overall CR/CRi was similar for the two arms. MRD negativity at end-induction was 85% in Arm A versus 67% in Arm B patients. DNA methylation measured in peripheral blood over the course of treatment tracked with blast clearance and matched marrow aspirates at day 0 and day 21. Unlike end-point marrow analyses, promoter methylation in blood identified an apparent reversal of response in the lone treatment failure, one week prior to the patient’s marrow aspirate confirming non-response. Decitabine-induced effects of end-induction marrows in Arm A were reflected by changes in DNA methylation and gene expression comparison with matched paired marrow diagnostic aspirates.ConclusionsThis first-in-pediatrics trial demonstrates that decitabine prior to standard combination chemotherapy is feasible and well tolerated in children with newly diagnosed AML. Pre-treatment with decitabine may represent a newer therapeutic option for pediatric AML, especially as it appears to induce important epigenetic alterations. The novel biological correlates studied in this trial offer a clinically relevant window into disease progression and remission. Additional studies are needed to definitively assess whether decitabine can enhance durability responses in children with AML. This trial was registered at www.clinicaltrials.gov as NCT01177540.
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- 2017
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14. Divergent HIV-1-Directed Immune Responses Generated by Systemic and Mucosal Immunization with Replicating Single-Cycle Adenoviruses in Rhesus Macaques
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Pramod N. Nehete, Kathryn A. Shelton, Guojun Yang, Stephanie S. Anguiano-Zarate, Ann J. Hessell, Philip Barnette, Michael A. Barry, William E. Matchett, Stephanie Dorta-Estremera, Francois Villinger, Peng Xiao, K. Jagannadha Sastry, Bharti P. Nehete, Siddappa N. Byrareddy, and Nancy L. Haigwood
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animal diseases ,Immunology ,HIV Infections ,chemical and pharmacologic phenomena ,Biology ,Antibodies, Viral ,Injections, Intramuscular ,Microbiology ,Virus ,Adenoviridae ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Virology ,Vaccines and Antiviral Agents ,Animals ,030212 general & internal medicine ,Immunity, Mucosal ,Administration, Intranasal ,030304 developmental biology ,AIDS Vaccines ,Antibody-dependent cell-mediated cytotoxicity ,0303 health sciences ,Vaccination ,SAIDS Vaccines ,Antibody titer ,Gene Products, env ,T-Lymphocytes, Helper-Inducer ,Viral Load ,biochemical phenomena, metabolism, and nutrition ,Macaca mulatta ,Immunity, Innate ,Immunization ,Insect Science ,HIV-1 ,biology.protein ,Simian Immunodeficiency Virus ,Antibody ,Viral load - Abstract
Most human immunodeficiency virus type 1 (HIV-1) infections begin at mucosal surfaces. Providing a barrier of protection at these may assist in combating the earliest events in infection. Systemic immunization by intramuscular (i.m.) injection can drive mucosal immune responses, but there are data suggesting that mucosal immunization can better educate these mucosal immune responses. To test this, rhesus macaques were immunized with replicating single-cycle adenovirus (SC-Ad) vaccines expressing clade B HIV-1 gp160 by the intranasal (i.n.) and i.m. routes to compare mucosal and systemic routes of vaccination. SC-Ad vaccines generated significant circulating antibody titers against Env after a single i.m. immunization. Switching the route of second immunization with the same SC-Ad serotype allowed a significant boost in these antibody levels. When these animals were boosted with envelope protein, envelope-binding antibodies were amplified 100-fold, but qualitatively different immune responses were generated. Animals immunized by only the i.m. route had high peripheral T follicular helper (pTfh) cell counts in blood but low Tfh cell counts in lymph nodes. Conversely, animals immunized by the i.n. route had high Tfh cell counts in lymph nodes but low pTfh cell counts in the blood. Animals immunized by only the i.m. route had lower antibody-dependent cellular cytotoxicity (ADCC) antibody activity, whereas animals immunized by the mucosal i.n. route had higher ADCC antibody activity. When these Env-immunized animals were challenged rectally with simian-human immunodeficiency virus (SHIV) strain SF162P3 (SHIV(SF162P3)), they all became infected. However, mucosally SC-Ad-immunized animals had lower viral loads in their gastrointestinal tracts. These data suggest that there may be benefits in educating the immune system at mucosal sites during HIV vaccination. IMPORTANCE HIV-1 infections usually start at a mucosal surface after sexual contact. Creating a barrier of protection at these mucosal sites may be a good strategy for to protect against HIV-1 infections. While HIV-1 enters at mucosa, most vaccines are not delivered here. Most are instead injected into the muscle, a site well distant and functionally different than mucosal tissues. This study tested if delivering HIV vaccines at mucosa or in the muscle makes a difference in the quality, quantity, and location of immune responses against the virus. These data suggest that there are indeed advantages to educating the immune system at mucosal sites with an HIV-1 vaccine.
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- 2019
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15. CD4+ T cells are dispensable for induction of heterologous tier 2 HIV neutralizing antibodies in rhesus macaques
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James Kobie, Philip Barnette, Shilpi Pandey, David Spencer, Madhubanti Basu, Michael Piepenbrink, Michael Keefer, Ann J Hessell, Nancy L Haigwood, and Sanghita Sarkar
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Immunology ,Immunology and Allergy - Abstract
Induction of a sustained and broad neutralizing antibody (Ab) response is a major goal in developing a protective HIV vaccine. Many HIV Envelope (Env)-specific broadly neutralizing antibodies isolated to date exhibit substantial somatic hypermutation, and their development in HIV infected individuals has been correlated with T follicular helper responses. This has bolstered the rational that a robust CD4+ T helper cell response will likely be required for the induction of such HIV broadly neutralizing antibody responses by vaccination. Using the VC10014 DNA-protein co-immunization vaccine platform consisting of gp160 envelope plasmids and gp140 trimeric envelope proteins derived from a clade B HIV-1 infected subject who developed broadly neutralizing serum Abs, and which has been previously shown to induce Tier 2 heterologous neutralizing Abs in rabbits and rhesus macaques, we determined the influence of CD4+ T cell depletion during the vaccination regimen on the characteristics of the Env-specific humoral response in rhesus macaques. Both CD4+ depleted and non-depleted animals developed Tier 2 heterologous neutralizing plasma antibodies, with no inferiority in titers among the CD4+ T cell depleted animals. Similarly, there was no diminishment of titers of HIV Env-specific cross-clade binding antibodies, antibody dependent cellular phagocytosis or antibody dependent complement deposition in the CD4+ depleted animals. These results suggest that HIV neutralizing antibodies can be induced in the absence of robust CD4+ T cell help, which may have implications for developing effective HIV vaccine strategies.
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- 2020
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16. Combination Adenovirus and Protein Vaccines Prevent Infection or Reduce Viral Burden after Heterologous Clade C Simian-Human Immunodeficiency Virus Mucosal Challenge
- Author
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Lo Vang, Marc Gurwith, Alfred W. Legasse, James M. Wilson, Jason S. Reed, Hua-Xin Liao, Samir K. Lakhashe, James H. McLinden, Delphine C. Malherbe, Nancy L. Haigwood, Ruth M. Ruprecht, Jack T. Stapleton, Joshua Owuor, Byung Park, Jonah B. Sacha, Michael K. Axthelm, Donald N. Forthal, Barton F. Haynes, Philip Barnette, Johannes S. Gach, Jonathan M. Smith, Jason Mendy, Jinhua Xiang, Celia C. LaBranche, David C. Montefiori, Jeff Alexander, and Silvestri, Guido
- Subjects
0301 basic medicine ,Male ,Cellular immunity ,and promotion of well-being ,HIV vaccine ,viruses ,T-Lymphocytes ,Simian Acquired Immunodeficiency Syndrome ,Kaplan-Meier Estimate ,Antibodies, Viral ,Medical and Health Sciences ,Viral Envelope Proteins ,Antibody Specificity ,vaccine ,Vector (molecular biology) ,Viral ,correlate of protection ,Neutralizing ,V1V2-specific antibody ,Vaccines, Synthetic ,Vaccines ,SAIDS Vaccines ,Simian immunodeficiency virus ,adenovirus vector ,Humoral ,neutralizing antibody ,adenovirus ,Viral Load ,Biological Sciences ,Infectious Diseases ,3.4 Vaccines ,HIV/AIDS ,Simian Immunodeficiency Virus ,Infection ,Viral load ,Protein Binding ,Biotechnology ,Genotype ,Immunology ,Genetic Vectors ,Viremia ,Biology ,Microbiology ,Virus ,Antibodies ,Viral vector ,Cell Line ,Adenoviridae ,Vaccine Related ,03 medical and health sciences ,Immunity ,Virology ,Vaccines and Antiviral Agents ,medicine ,SHIV challenge ,Animals ,Humans ,Vaccine Related (AIDS) ,simian human immunodeficiency virus ,Agricultural and Veterinary Sciences ,Prevention ,Synthetic ,HIV ,medicine.disease ,Prevention of disease and conditions ,Antibodies, Neutralizing ,Macaca mulatta ,Immunity, Humoral ,CD4 Lymphocyte Count ,030104 developmental biology ,Good Health and Well Being ,Insect Science ,Immunization ,rhesus macaque - Abstract
HIV vaccine development is focused on designing immunogens and delivery methods that elicit protective immunity. We evaluated a combination of adenovirus (Ad) vectors expressing HIV 1086.C (clade C) envelope glycoprotein (Env), SIV Gag p55, and human pegivirus GBV-C E2 glycoprotein. We compared replicating simian (SAd7) with nonreplicating human (Ad4) adenovirus-vectored vaccines paired with recombinant proteins in a novel prime-boost regimen in rhesus macaques, with the goal of eliciting protective immunity against SHIV challenge. In both vaccine groups, plasma and buccal Env-specific IgG, tier 1 heterologous neutralizing antibodies, and antibody-dependent cell-mediated viral inhibition were readily generated. High Env-specific T cell responses elicited in all vaccinees were significantly greater than responses targeting Gag. After three intrarectal exposures to heterologous tier 1 clade C SHIV, all 10 sham-vaccinated controls were infected, whereas 4/10 SAd7- and 3/10 Ad4-vaccinated macaques remained uninfected or maintained tightly controlled plasma viremia. Time to infection was significantly delayed in SAd7-vaccinated macaques compared to the controls. Cell-associated and plasma virus levels were significantly lower in each group of vaccinated macaques compared to controls; the lowest plasma viral burden was found in animals vaccinated with the SAd7 vectors, suggesting superior immunity conferred by the replicating simian vectors. Furthermore, higher V1V2-specific binding antibody titers correlated with viral control in the SAd7 vaccine group. Thus, recombinant Ad plus protein vaccines generated humoral and cellular immunity that was effective in either protecting from SHIV acquisition or significantly reducing viremia in animals that became infected, consequently supporting additional development of replicating Ad vectors as HIV vaccines. IMPORTANCE There is a well-acknowledged need for an effective AIDS vaccine that protects against HIV infection and limits in vivo viral replication and associated pathogenesis. Although replicating virus vectors have been advanced as HIV vaccine platforms, there have not been any direct comparisons of the replicating to the nonreplicating format. The present study directly compared the replicating SAd7 to nonreplicating Ad4 vectors in macaques and demonstrated that in the SAd7 vaccine group, the time to infection was significantly delayed compared to the control group, and V1V2 Env-specific binding antibodies correlated with viral outcomes. Viral control was significantly enhanced in vaccinated macaques compared to controls, and in infected SAd7-vaccinated macaques compared to Ad4-vaccinated macaques, suggesting that this vector may have conferred more effective immunity. Because blocking infection is so difficult with current vaccines, development of a vaccine that can limit viremia if infection occurs would be valuable. These data support further development of replicating adenovirus vectors.
- Published
- 2018
17. Clinicopathologic comparison of familial versus sporadic atypical teratoid/rhabdoid tumors (AT/RT) of the central nervous system
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Jaclyn A. Biegel, Steven B. Bleyl, Theodore J. Pysher, Philip Barnette, Carol S. Bruggers, Marion L. Walker, and Zeinab Afify
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Male ,Pathology ,medicine.medical_specialty ,Chromosomal Proteins, Non-Histone ,Central nervous system ,Brain tumor ,Article ,Rhabdoid Tumor Predisposition Syndrome ,Central Nervous System Neoplasms ,Germline mutation ,medicine ,Humans ,Genetic Predisposition to Disease ,SMARCB1 ,Survival rate ,Germ-Line Mutation ,Rhabdoid Tumor ,Retrospective Studies ,business.industry ,Teratoma ,Infant ,SMARCB1 Protein ,Hematology ,medicine.disease ,Pedigree ,DNA-Binding Proteins ,Survival Rate ,Treatment Outcome ,medicine.anatomical_structure ,Oncology ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Female ,business ,Progressive disease ,Transcription Factors - Abstract
Central nervous system (CNS) atypical teratoid/rhabdoid tumors (AT/RT) are aggressive tumors usually diagnosed in young children and characterized by SMARCB1 (INI1, hSNF5) gene abnormalities. Despite initial chemo-radiation responsiveness, most children die of progressive disease (PD). Little data regarding familial AT/RT clinical course exist. This study described and compared familial (F) versus sporadic (S) AT/RT and elucidated SMARCB1 mutations and inheritance patterns.A retrospective chart review, pedigree, and SMARCB1 analysis were done.Between January 1989 and June 2009, 20 children with CNS AT/RT were diagnosed, 8-S and 12-F. Median age at diagnosis (months) of S and F patient were: 13 and 4.8, respectively. Median survival (months) was S-21, F4.5, and 8-all. Pedigree analyses showed unaffected parent carriers with multiple affected offspring.Children with F-AT/RT are younger, have more extensive disease, and are more likely to die from PD than children with S-AT/RT. Surgery, radiation, and chemotherapy were important in achieving long-term survival. Pedigree analysis supports autosomal dominant inheritance pattern with incomplete penetrance. Germline SMARCB1 mutation analysis is important in all patients diagnosed with AT/RT to (1) determine actual incidence of F-AT/RT, (2) determine penetrance of predisposing mutations, (3) provide appropriate genetic counseling, and (4) establish surveillance screening guidelines.
- Published
- 2010
- Full Text
- View/download PDF
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