27 results on '"Petry I"'
Search Results
2. Prognostische Bedeutung von Immunglobulin Kappa C für das metastasenfreie Überleben beim adjuvant unbehandelten nodal-negativen Mammakarzinom: PO037
- Author
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Schmidt, M., Petry, I., Böhm, D., Lebrecht, A., Gehrmann, M., Hengstler, J., and Kölbl, H.
- Published
- 2010
3. Outcome of renal grafts after simultaneous kidney/ pancreas transplantation
- Author
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Hillebrand, G., Illner, W. -D., Abendroth, D., Schneeberger, H., Petry, I., Schleibner, S., Landgraf, R., and Land, W.
- Published
- 1991
- Full Text
- View/download PDF
4. Conformational stability of six truncated cHMG1a proteins studied in their mixture by H/D exchange and electrospray ionization mass spectrometry
- Author
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Petry, I., Wiśniewski, J. R., and Zbigniew Szewczuk
- Subjects
Spectrometry, Mass, Electrospray Ionization ,Time Factors ,Protein Conformation ,Thermodynamics ,Cloning, Molecular ,HMGB1 Protein ,General Biochemistry, Genetics and Molecular Biology ,Mass Spectrometry ,Protein Binding ,Protein Structure, Tertiary - Abstract
The high mobility group (HMG) proteins are abundant non-histone components of eukaryotic chromatin. The presence of C-terminal acidic tails is a common feature of the majority of HMG proteins. Although the biological significance of the acidic domains is not clear, they are conferring conformational and metabolic stability to the proteins in vitro. Moreover, the length and net charge of the acidic tails affect the strength of HMG protein interaction with DNA. Synthesis of an insect HMG protein by standard recombinant technology in bacteria leads to a mixture of the intact protein (cHMG1a-(1-113) (I)) and a series of its degradation products truncated at the C tail: cHMG1a-(1-111) (II); cHMG1a-(1-110) (III); cHuMGla-(1-109) (IV); cHMG1a-(1-108) (V); cHMG1a-(1-107) (VI); cHMG1a-(1-106) (VII). The proteins differ from each other only by the number of amino-acid residues at the C-terminal tail. We used H/D exchange mass spectrometry to characterize the stability of the proteins directly in their mixture. The results show that the proteins I-V and VII have very similar conformations. The protein VI is less compact and exchanges its protons faster than the others. It may be concluded that the C-terminal tail influences the conformation of the cHMG1a protein and that individual residues in this part of the protein play a key role in its compactness.
- Published
- 2002
5. Immunoreactive score of Ep-CAM might predict survival in early ovarian cancer patients
- Author
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Battista, MJ, primary, Steetskamp, J, additional, Mantai, N, additional, Gebhard, S, additional, Cotarelo, C, additional, Victor, A, additional, Petry, I, additional, Schmidt, M, additional, and Kölbl, H, additional
- Published
- 2011
- Full Text
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6. Disparities in the prognostic significance of proliferation amongst different molecular subtypes in node-negative breast cancer.
- Author
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Schmidt, M., primary, Petry, I., additional, Boehm, D., additional, Lebrecht, A., additional, Gebhard, S., additional, Koelbl, H., additional, Gehrmann, M., additional, and Hengstler, J. G., additional
- Published
- 2011
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7. Validierung der prognostischen Bedeutung von Immunglobulin Kappa C für das metastasenfreie Überleben beim nodal-negativen Mammakarzinom in drei unabhängigen Kollektiven
- Author
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Schmidt, M, primary, Petry, I, additional, Böhm, D, additional, Lebrecht, A, additional, Hengstler, J, additional, Gehrmann, M, additional, and Kölbl, H, additional
- Published
- 2010
- Full Text
- View/download PDF
8. Prognostic significance of immunoglobulin kappa C in node-negative breast cancer is both conserved across and independent from molecular subtypes.
- Author
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Schmidt, M., primary, Petry, I., additional, Boehm, D., additional, Lebrecht, A., additional, Koelbl, H., additional, Gehrmann, M., additional, and Hengstler, J. G., additional
- Published
- 2010
- Full Text
- View/download PDF
9. Evaluation of high temperature glycation of proteins and peptides by electrospray ionization mass spectrometry.
- Author
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Stefanowicz, P, primary, Boratyński, J, additional, Kańska, U, additional, Petry, I, additional, and Szewczuk, Z, additional
- Published
- 2001
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10. Conformational stability of six truncated cHMG1a proteins studied in their mixture by H/D exchange and electrospray ionization mass spectrometry.
- Author
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Petry, I, primary, Wigniewski, J R, additional, and Szewczuk, Z, additional
- Published
- 2001
- Full Text
- View/download PDF
11. Design, synthesis and biological evaluation of a new bridged immunosuppressor.
- Author
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Szewczuk, Z, primary, Wilczyński, A, additional, Petry, I, additional, Siemion, I Z, additional, and Wieczorek, Z, additional
- Published
- 2001
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12. New conformationally restricted analog of the immunosuppressory mini-domain of HLA-DQ and its biological properties
- Author
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Szewczuk, Z., Wilczynski, A., Dyba, M., Petry, I., Siemion, I. Z., and Wieczorek, Z.
- Published
- 2000
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13. Constitutive phosphorylation of the acidic tails of the high mobility group 1 proteins by casein kinase II alters their conformation, stability, and DNA binding specificity.
- Author
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Wiśniewski, J R, Szewczuk, Z, Petry, I, Schwanbeck, R, and Renner, U
- Abstract
The high mobility group (HMG) 1 and 2 proteins are the most abundant non-histone components of chromosomes. Here, we report that essentially the entire pool of HMG1 proteins in Drosophila embryos and Chironomus cultured cells is phosphorylated at multiple serine residues located within acidic tails of these proteins. The phosphorylation sites match the consensus phosphorylation site of casein kinase II. Electrospray ionization mass spectroscopic analyses revealed that Drosophila HMGD and Chironomus HMG1a and HMG1b are double-phosphorylated and that Drosophila HMGZ is triple-phosphorylated. The importance of this post-translational modification was studied by comparing some properties of the native and in vitro dephosphorylated proteins. It was found that dephosphorylation affects the conformation of the proteins and decreases their conformational and metabolic stability. Moreover, it weakens binding of the proteins to four-way junction DNA by 2 orders of magnitude, whereas the strength of binding to linear DNA remains unchanged. Based on these observations, we propose that the detected phosphorylation is important for the proper function and turnover rates of these proteins. As the occurrence of acidic tails containing canonical casein kinase II phosphorylation sites is common to diverse HMG and other chromosomal proteins, our results are probably of general significance.
- Published
- 1999
14. Evaluation of high temperature glycation of proteins and peptides by electrospray ionization mass spectrometry
- Author
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Piotr Stefanowicz, Boratyński, J., Kańska, U., Petry, I., and Szewczuk, Z.
- Subjects
Spectrometry, Mass, Electrospray Ionization ,Models, Chemical ,Circular Dichroism ,Glycine ,Temperature ,Proteins ,Muramidase ,Peptides ,General Biochemistry, Genetics and Molecular Biology - Abstract
Recently Boratyński & Roy (Glycoconjugate J., 1998, 15, 131) described a fast and convenient procedure for the synthesis of glycoconjugates. In the present study we used ESI-MS and circular dichroism as tools to analyze non-enzymatic glycation products of proteins and peptides. We discuss influence of reaction conditions on the rate of glycation of lysozyme. We analyze for the first time collision induced dissociation spectra of the obtained peptide conjugates.
15. Design, synthesis and biological evaluation of a new bridged immunosuppressor
- Author
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Zbigniew Szewczuk, Wilczyński, A., Petry, I., Siemion, I. Z., and Wieczorek, Z.
- Subjects
Models, Molecular ,Epitopes ,Mice ,Binding Sites ,Time Factors ,HLA-DQ Antigens ,CD4 Antigens ,Animals ,Humans ,Peptides ,General Biochemistry, Genetics and Molecular Biology ,Immunosuppressive Agents ,Protein Structure, Tertiary - Abstract
A bridged peptide with the sequence: H-Thr-Pro-Gln-Arg-Gly-Asp-Val-gamma-Abu-Asn-Asp-Gln-Glu-Glu-Thr-Thr-Gly-Val-Val-Ser-Thr-Pro-Leu-Ile-Arg-Asn-Gly-OH was designed to mimic the discontinuous epitope of the HLA-DQ molecule that might interact with CD4. The bridged peptide revealed distinct suppressory effect in the humoral immune response. This result supports our suggestion that the 164-172 region of the HLA-DQ molecule may enhance its interactions with coreceptors, possibly with CD4.
16. In situ co-amorphisation in coated tablets - The combination of carvedilol with aspartic acid during immersion in an acidic medium.
- Author
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Petry I, Löbmann K, Grohganz H, Rades T, and Leopold CS
- Subjects
- Aspartic Acid chemistry, Carvedilol chemistry, Chemistry, Pharmaceutical, Drug Liberation, Hydrogen-Ion Concentration, Hydrochloric Acid chemistry, Tablets chemistry
- Abstract
In the present study the feasibility of an in situ co-amorphisation of the basic drug carvedilol with the acidic co-former aspartic acid was investigated by immersion of film-coated tablets consisting of the two compounds in 0.1 MHCl. Tablets containing either crystalline carvedilol with aspartic acid or only crystalline carvedilol were prepared and coated with a gastro-resistant but water-permeable coating of a methacrylic acid - ethyl acrylate copolymer (Eudragit®L55). The film-coated tablets were immersed in 0.1 M HCl for 0, 45, and 120 min and their solid-state properties were analysed by X-ray powder diffractometry (XRPD), differential scanning calorimetry (DSC), dynamic mechanical analysis (DMA), and Fourier transformed infrared spectroscopy (FTIR). The drug release behaviour from these tablets was investigated at pH 6.8. It was shown that the formulation containing carvedilol with aspartic acid formed a co-amorphous system during immersion, while the formulation containing only carvedilol remained crystalline. FTIR spectroscopy indicated molecular interactions in the co-amorphous carvedilol-aspartic acid system, which explained the single T
g found using DMA (106 ± 4 °C). However, because of a lack of sufficient disintegration, drug release of the immersed co-amorphous formulation was lower than from the untreated tablets (immersed for 0 min) containing only carvedilol or the crystalline physical mixture of carvedilol and aspartic acid. After overcoming the disadvantage of the insufficient disintegration, it may be concluded that in situ co-amorphisation in a film-coated tablet by immersion in 0.1 M HCl appears to be a feasible formulation approach for poorly water-soluble basic drugs., (Copyright © 2019 Elsevier B.V. All rights reserved.)- Published
- 2019
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17. In situ co-amorphisation of arginine with indomethacin or furosemide during immersion in an acidic medium - A proof of concept study.
- Author
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Petry I, Löbmann K, Grohganz H, Rades T, and Leopold CS
- Subjects
- Calorimetry, Differential Scanning methods, Chemistry, Pharmaceutical methods, Citric Acid chemistry, Hydrolysis, Methylmethacrylates chemistry, Naproxen chemistry, Proof of Concept Study, Solubility, Spectroscopy, Fourier Transform Infrared methods, Tablets chemistry, X-Ray Diffraction methods, Arginine chemistry, Furosemide chemistry, Indomethacin chemistry
- Abstract
The concept of controlled in situ amorphisation of drug/polymer mixtures has been introduced previously with indomethacin-Eudragit
® E and naproxen-Eudragit® E compacts. In the present study, the feasibility of in situ amorphisation of a crystalline API with the low molecular weight coformer arginine was investigated. This research was based on a previous study, which showed that a high relative humidity (75% RH) may induce co-amorphisation of indomethacin with arginine. It was assumed that an in situ co-amorphisation may be achieved, if a tablet containing a crystalline acidic API and the basic amino acid arginine, coated with a gastro-resistant but water-permeable coating, is exposed to an acidic medium. To investigate this hypothesis, tablets containing arginine and either indomethacin or furosemide were coated with Eudragit®L. After different time periods of immersion (10, 20, 30, 60, 120 min) in 0.1 MHCl, samples were analysed with respect to their solid state properties by XRPD, FTIR spectroscopy and modulated temperature DSC. In both formulations co-amorphous API-arginine was already detected after 10 min of immersion. The maximum of co-amorphous content was reached after 20 min with both formulations, while longer immersion time periods than 60 min revealed a partial API recrystallisation. In addition, during immersion of the indomethacin-arginine formulation, basic hydrolysis of indomethacin was observed, which could be prevented by addition of citric acid to the tablet formulation. However, this addition also inhibited the co-amorphisation of indomethacin. In this proof-of-principle study it was shown that the concept of in situ co-amorphisation of APIs with arginine might be a feasible formulation approach for those poorly water-soluble drugs, which are not susceptible to basic hydrolysis., (Copyright © 2018 Elsevier B.V. All rights reserved.)- Published
- 2018
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18. Undesired co-amorphisation of indomethacin and arginine during combined storage at high humidity conditions.
- Author
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Petry I, Löbmann K, Grohganz H, Rades T, and Leopold CS
- Subjects
- Calorimetry, Differential Scanning, Chromatography, High Pressure Liquid, Crystallization, Drug Stability, Drug Storage, Humidity, Powder Diffraction, Spectroscopy, Fourier Transform Infrared, Thermogravimetry, X-Ray Diffraction, Anti-Inflammatory Agents, Non-Steroidal chemistry, Arginine chemistry, Excipients chemistry, Indomethacin chemistry
- Abstract
The use of co-amorphous systems for solubility enhancement of poorly water-soluble drugs has recently gained interest in the field of pharmaceutical technology. However, undesired co-amorphisation of a drug may lead to an alteration of the performance of the drug product, e.g. the previously observed co-amorphisation of indomethacin and arginine upon storage of tablets containing both components in an initially crystalline form at room temperature (RT) and 75% relative humidity (RH). Therefore, the aim of the present study was to further investigate this unintended co-amorphisation by storing plain crystalline γ-indomethacin and arginine as well as physical mixtures of both components at RT and three different RH levels (28, 58, and 75% RH). After storage for up to 101 days, their properties were analysed by X-ray powder diffraction, infrared spectroscopy, differential scanning calorimetry, thermogravimetric analysis, and HPLC. Results showed that the solid state of plain γ-indomethacin did not change during storage at all three storage conditions. In contrast, arginine was found to form a dihydrate upon storage at RT/58% RH and RT/75% RH. The physical mixtures, stored at RT/28% RH and RT/58% RH, remained crystalline and were chemically stable, while the formation of a co-amorphous salt between indomethacin and arginine as well as basic hydrolysis of indomethacin started already 1 day after exposure to RT/75% RH. Moreover, formation of a crystalline salt of indomethacin and arginine upon storage at RT/75% RH was observed. As neither of these instabilities occurred, if indomethacin was stored separately, the simultaneous effects of arginine and moisture on the solid state properties and chemical stability of indomethacin should be taken into account, if selecting arginine as excipient., (Copyright © 2018 Elsevier B.V. All rights reserved.)
- Published
- 2018
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19. Solid state properties and drug release behavior of co-amorphous indomethacin-arginine tablets coated with Kollicoat® Protect.
- Author
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Petry I, Löbmann K, Grohganz H, Rades T, and Leopold CS
- Subjects
- Arginine pharmacokinetics, Drug Liberation, Indomethacin pharmacokinetics, Polyvinyls pharmacokinetics, Spectroscopy, Fourier Transform Infrared methods, Tablets, Enteric-Coated, X-Ray Diffraction methods, Chemistry, Pharmaceutical methods, Indomethacin chemical synthesis, Polyvinyls chemical synthesis
- Abstract
A promising approach to improve the solubility of poorly water-soluble drugs and to overcome the stability issues related to the plain amorphous form of the drugs, is the formulation of drugs as co-amorphous systems. Although polymer coatings have been proven very useful with regard to tablet stability and modifying drug release, there is little known on coating co-amorphous formulations. Hence, the aim of the present study was to investigate whether polymer coating of co-amorphous formulations is possible without inducing recrystallization. Tablets containing either a physical mixture of crystalline indomethacin and arginine or co-amorphous indomethacin-arginine were coated with a water soluble polyvinyl alcohol-polyethylene glycol graft copolymer (Kollicoat® Protect) and stored at 23°C/0% RH and 23°C/75% RH. The solid state properties of the coated tablets were analyzed by XRPD and FTIR and the drug release behavior was tested for up to 4h in phosphate buffer pH 4.5. The results showed that the co-amorphous formulation did not recrystallize during the coating process or during storage at both storage conditions for up to three months, which confirmed the high physical stability of this co-amorphous system. Furthermore, the applied coating could partially inhibit recrystallization of indomethacin during drug release testing, as coated tablets reached a higher level of supersaturation compared to the respective uncoated formulations and showed a lower decrease of the dissolved indomethacin concentration upon precipitation. Thus, the applied coating enhanced the AUC of the dissolution curve of the co-amorphous tablets by about 30%. In conclusion, coatings might improve the bioavailability of co-amorphous formulations., (Copyright © 2017 Elsevier B.V. All rights reserved.)
- Published
- 2017
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20. A comprehensive analysis of human gene expression profiles identifies stromal immunoglobulin κ C as a compatible prognostic marker in human solid tumors.
- Author
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Schmidt M, Hellwig B, Hammad S, Othman A, Lohr M, Chen Z, Boehm D, Gebhard S, Petry I, Lebrecht A, Cadenas C, Marchan R, Stewart JD, Solbach C, Holmberg L, Edlund K, Kultima HG, Rody A, Berglund A, Lambe M, Isaksson A, Botling J, Karn T, Müller V, Gerhold-Ay A, Cotarelo C, Sebastian M, Kronenwett R, Bojar H, Lehr HA, Sahin U, Koelbl H, Gehrmann M, Micke P, Rahnenführer J, and Hengstler JG
- Subjects
- B-Lymphocytes metabolism, B-Lymphocytes pathology, Biomarkers, Tumor metabolism, Breast Neoplasms metabolism, Carcinoma, Non-Small-Cell Lung metabolism, Cohort Studies, Colorectal Neoplasms metabolism, Female, Follow-Up Studies, Humans, Immunoenzyme Techniques, Immunoglobulins metabolism, Lung Neoplasms genetics, Lung Neoplasms metabolism, Ovarian Neoplasms metabolism, Paraffin Embedding, Prognosis, Stromal Cells metabolism, Stromal Cells pathology, Biomarkers, Tumor genetics, Breast Neoplasms genetics, Carcinoma, Non-Small-Cell Lung genetics, Colorectal Neoplasms genetics, Gene Expression Profiling, Immunoglobulins genetics, Ovarian Neoplasms genetics
- Abstract
Purpose: Although the central role of the immune system for tumor prognosis is generally accepted, a single robust marker is not yet available., Experimental Design: On the basis of receiver operating characteristic analyses, robust markers were identified from a 60-gene B cell-derived metagene and analyzed in gene expression profiles of 1,810 breast cancer; 1,056 non-small cell lung carcinoma (NSCLC); 513 colorectal; and 426 ovarian cancer patients. Protein and RNA levels were examined in paraffin-embedded tissue of 330 breast cancer patients. The cell types were identified with immunohistochemical costaining and confocal fluorescence microscopy., Results: We identified immunoglobulin κ C (IGKC) which as a single marker is similarly predictive and prognostic as the entire B-cell metagene. IGKC was consistently associated with metastasis-free survival across different molecular subtypes in node-negative breast cancer (n = 965) and predicted response to anthracycline-based neoadjuvant chemotherapy (n = 845; P < 0.001). In addition, IGKC gene expression was prognostic in NSCLC and colorectal cancer. No association was observed in ovarian cancer. IGKC protein expression was significantly associated with survival in paraffin-embedded tissues of 330 breast cancer patients. Tumor-infiltrating plasma cells were identified as the source of IGKC expression., Conclusion: Our findings provide IGKC as a novel diagnostic marker for risk stratification in human cancer and support concepts to exploit the humoral immune response for anticancer therapy. It could be validated in several independent cohorts and carried out similarly well in RNA from fresh frozen as well as from paraffin tissue and on protein level by immunostaining., (©2012 AACR.)
- Published
- 2012
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21. p53 is correlated with low BMI negative progesterone receptor status and recurring disease in patients with endometrial cancer.
- Author
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Seeger A, Kölbl H, Petry IB, Gebhard S, Battista MJ, Böhm D, and Steiner E
- Subjects
- Adenocarcinoma complications, Adenocarcinoma mortality, Adenocarcinoma pathology, Adult, Aged, Aged, 80 and over, Blotting, Western, Case-Control Studies, Diabetes Complications metabolism, Disease-Free Survival, Electrophoresis, Polyacrylamide Gel, Endometrial Neoplasms complications, Endometrial Neoplasms mortality, Endometrial Neoplasms pathology, Female, Genes, p53, Humans, Kaplan-Meier Estimate, Middle Aged, Prognosis, Recurrence, Tumor Suppressor Protein p53 genetics, Up-Regulation, Adenocarcinoma metabolism, Biomarkers, Tumor metabolism, Body Mass Index, Endometrial Neoplasms metabolism, Receptors, Progesterone analysis, Tumor Suppressor Protein p53 metabolism
- Abstract
Objective: P53 tumor suppressor gene plays a role in endometrial carcinogenesis. Former studies described correlations between p53 protein overexpression in endometrial cancer and prognostic factors, measured by immunohistochemistry. But data is still controversial. The aim of this study was to measure p53 and phospho-p53 overexpression by Western blot and evaluate correlations between overexpression and prognostic and clinical factors. Phospho-p53 seems to be the functional p53 protein and was examined for the first time in endometrial cancer., Methods: 40 patients with endometrial cancer were included in the study. A control group of 20 patients with normal endometrial tissue samples was used. Western blot was performed for detection of p53 and phospho-p53. Clinical and pathological parameters were obtained from medical records. Statistical analysis was performed using the log-rank test, the Mann-Whitney test for two independent groups and the Fisher's exact test for dichotomous groupings., Results: In 17.5% of the patients with endometrial cancer a p53 overexpression could be evaluated. There was a correlation between a p53 overexpression and recurring disease (p: 0.014), a negative progesterone receptor status (p: 0.021) and a low BMI (p: 0.022). Only one of 40 patients had a phospho-p53 expression., Conclusion: Western blot is a valid method for the detection of p53 overexpression. As other authors described before, p53 overexpression seems to correlate with negative prognostic factors. The correlation between p53 overexpression and a low BMI may underline the relationship between p53 alterations and biological aggressive endometrial carcinomas., (Copyright © 2011 Elsevier Inc. All rights reserved.)
- Published
- 2012
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22. Prognostic effect of epithelial cell adhesion molecule overexpression in untreated node-negative breast cancer.
- Author
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Schmidt M, Hasenclever D, Schaeffer M, Boehm D, Cotarelo C, Steiner E, Lebrecht A, Siggelkow W, Weikel W, Schiffer-Petry I, Gebhard S, Pilch H, Gehrmann M, Lehr HA, Koelbl H, Hengstler JG, and Schuler M
- Subjects
- Adult, Aged, Aged, 80 and over, Biomarkers, Tumor, Breast Neoplasms mortality, Breast Neoplasms pathology, Drug Delivery Systems, Epithelial Cell Adhesion Molecule, Female, Humans, Lymphatic Metastasis, Middle Aged, Neoplasms, Hormone-Dependent, Prognosis, Antigens, Neoplasm metabolism, Breast Neoplasms metabolism, Cell Adhesion Molecules metabolism
- Abstract
Purpose: Epithelial cell adhesion molecule (Ep-CAM) recently received increased attention not only as a prognostic factor in breast cancer but also as a potential target for immunotherapy. We examined Ep-CAM expression in 402 consecutive node-negative breast cancer patients with long-term follow-up not treated in the adjuvant setting., Experimental Design: Ep-CAM expression was evaluated by immunostaining. Its prognostic effect was estimated relative to overexpression/amplification of HER-2, histologic grade, tumor size, age, and hormone receptor expression., Results: Ep-CAM status was positive in 106 (26.4%) patients. In multivariate analysis, Ep-CAM status was associated with disease-free survival independent of age, pT stage, histologic grade, estrogen receptor (ER), progesterone receptor (PR), as well as HER2 status (P = 0.028; hazard ratio, 1.60; 95% confidence interval, 1.05-2.44). Recently, so-called triple-negative (HER-2, ER, and PR) breast cancer has received increased attention. We noticed a similar association of Ep-CAM with disease-free survival in the triple-negative group as for the entire cohort., Conclusion: In this study of untreated breast cancer patients, Ep-CAM overexpression was associated with poor survival in the entire cohort and in the subgroup of triple-negative breast cancer. This suggests that Ep-CAM may be a well-suited target for specific therapies particularly in HER-2-, ER-, and PR-negative tumors.
- Published
- 2008
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23. Role of urokinase-type plasminogen activator (uPA) and plasminogen activator inhibitor type 1 (PAI-1) for prognosis in endometrial cancer.
- Author
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Steiner E, Pollow K, Hasenclever D, Schormann W, Hermes M, Schmidt M, Puhl A, Brulport M, Bauer A, Petry IB, Koelbl H, and Hengstler JG
- Subjects
- Adenocarcinoma mortality, Adenocarcinoma pathology, Adenocarcinoma surgery, Disease-Free Survival, Endometrial Neoplasms mortality, Endometrial Neoplasms pathology, Endometrial Neoplasms surgery, Female, Germany epidemiology, Humans, Middle Aged, Neoplasm Staging, Predictive Value of Tests, Prognosis, Survival Analysis, Adenocarcinoma metabolism, Biomarkers, Tumor metabolism, Endometrial Neoplasms metabolism, Plasminogen Activator Inhibitor 1 metabolism, Urokinase-Type Plasminogen Activator metabolism
- Abstract
Background: Urokinase-type plasminogen activator (uPA) and plasminogen activator inhibitor type 1 (PAI-1) contribute to the invasiveness of many carcinomas. Here, we studied a possible association between cytosolic uPA and PA-1 concentrations in tumor tissue with prognosis in patients with endometrial cancer., Methods: Cytosolic concentrations of uPA and PAI-1 were determined in 69 primary endothelial adenocarcinomas using an enzyme-linked immunoassay (ELISA). A possible influence of uPA and PAI-1 was studied by multivariate Cox regression adjusting for the established clinical prognostic factors FIGO-stage, grading, depth of invasion, diabetes mellitus and age., Results: Both uPA (p=0.011) and PAI-1 (p=0.003) were associated with relapse free time using the multivariate proportional hazards model. Association with overall survival was less pronounced with p=0.021 for uPA and p=0.358 for PAI-1. Concentrations of PAI-1 increased with FIGO stage (p=0.003) and with histological grading (p=0.005). Both uPA and PAI-1 concentrations were negatively correlated with estrogen and progesterone receptor levels., Conclusion: The combination of high cytosolic concentrations of uPA (>5 ng/mg total protein) and high PAI-1 (>20 ng/mg total protein) may reveal a group of patients with increased risk of progression.
- Published
- 2008
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24. Proteomic methods applied to the analysis of immobilized biocatalysts.
- Author
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Petry I, Ganesan A, Pitt A, Moore BD, and Halling PJ
- Subjects
- Adsorption, Automation, Bioreactors, Catalysis, Chromatography, Liquid, Electrophoresis, Polyacrylamide Gel, Enzymes, Immobilized chemistry, Fungal Proteins, Glycosylation, Lipase analysis, Lipase chemistry, Mass Spectrometry, Enzymes, Immobilized analysis, Proteomics methods
- Abstract
Methods adapted from proteomics can directly characterize proteins present in immobilized biocatalysts. Complete hydrolysis followed by HPLC analysis of Tyr and Phe estimates total protein bound, and is preferable to conventional difference methods, as tested with subtilisin Carlsberg on silica. This new method shows that various treatments give quantitative desorption of proteins immobilized by adsorption. Intact desorbed proteins may be analyzed by electrospray mass spectrometry. The Candida antarctica lipase B from Novozyme 435 was shown to be heavily glycosylated, while the lipase from Lipozyme RM IM was a mixture of four N-terminally truncated forms. Peptides from selective cleavage were analyzed by tandem mass spectrometry, leading to automatic identification of proteins present. A second major protein present in Lipozyme RM IM was thus found to be alpha-amylase from Aspergillus oryzae. These methods should be valuable complements to activity measurements in understanding immobilized enzyme activity and stability., ((c) 2006 Wiley Periodicals, Inc.)
- Published
- 2006
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25. Circular dichroism studies of subtilisin Carlsberg immobilised on micron sized silica particles.
- Author
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Ganesan A, Price NC, Kelly SM, Petry I, Moore BD, and Halling PJ
- Subjects
- Bacillus enzymology, Catalysis, Circular Dichroism, Enzymes, Immobilized chemistry, Hydrolysis, Protein Structure, Secondary, Protein Structure, Tertiary, Silicon Dioxide chemistry, Spectrophotometry, Subtilisins metabolism, Ultraviolet Rays, Biophysics methods, Subtilisins chemistry
- Abstract
Immobilised enzymes are widely used in industry, but the reasons for loss of activity of such biocatalysts are usually not known. We have used circular dichroism (CD) to investigate the structure of one such system, i.e., subtilisin Carlsberg (SC) immobilised on silica gel particles (60 microm). A number of technical problems have to be overcome in order to obtain appropriate data from which conclusions can be drawn. A rotating cell holder has been developed to avoid sedimentation of the silica particles during the collection of spectra. By moving the cell holder as close as possible to the detector window, the effects of differential scattering can be minimised. However, the effects of absorption flattening limit the extent to which reliable quantitative information on secondary structure content can be obtained from far UV CD studies. We have used an empirical approach based on absorbance units derived from the high-tension voltage to correct for absorption flattening effects. After applying the correction there was satisfactory agreement with the solution spectra. Comparison of the fresh and used (inactive) SC-silica gel spectra in organic media reveals substantial change in the secondary structure. Additional evidence for loss of native conformation is provided by the significant decrease in the near UV CD spectrum. These results for the first time clearly demonstrate the origin of enzyme instability in the immobilised state.
- Published
- 2006
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26. Consecutive steps of phosphorylation affect conformation and DNA binding of the chironomus high mobility group A protein.
- Author
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Schwanbeck R, Gymnopoulos M, Petry I, Piekiełko A, Szewczuk Z, Heyduk T, Zechel K, and Wiśniewski JR
- Subjects
- Animals, Chironomidae genetics, DNA genetics, DNA metabolism, High Mobility Group Proteins genetics, Phosphorylation, Protein Binding, Protein Conformation, Chironomidae metabolism, High Mobility Group Proteins metabolism
- Abstract
The high mobility group (HMG) proteins of the AT-hook family (HMGA) lie downstream in regulatory networks with protein kinase C, Cdc2 kinase, MAP kinase, and casein kinase 2 (CK2) as final effectors. In the cells of the midge Chironomus, almost all of the HMGA protein (cHMGA) is phosphorylated by CK2 at two adjacent sites. 40% of the protein population is additionally modified by MAP kinase. Using spectroscopic and protein footprinting techniques, we analyzed how individual and consecutive steps of phosphorylation change the conformation of an HMGA protein and affect its contacts with poly(dA-dT).poly(dA-dT) and a fragment of the interferon-beta promoter. We demonstrate that phosphorylation of cHMGA by CK2 alters its conformation and modulates its DNA binding properties such that a subsequent phosphorylation by Cdc2 kinase changes the organization of the protein-DNA complex. In contrast, consecutive phosphorylation by MAP kinase, which results in a dramatic change in cHMGA conformation, has no direct effect on the complex. Because the phosphorylation of the HMGA proteins attenuates binding affinity and reduces the extent of contacts between the DNA and protein, it is likely that this process mirrors the dynamics and diversity of regulatory processes in chromatin.
- Published
- 2001
- Full Text
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27. Inhibition of serine proteinases from human blood clotting system by squash inhibitor mutants.
- Author
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Grzesiak A, Buczek O, Petry I, Szewczuk Z, and Otlewski J
- Subjects
- Factor Xa Inhibitors, Fibrinolysin antagonists & inhibitors, Humans, Kallikreins antagonists & inhibitors, Kallikreins blood, Models, Molecular, Plant Proteins genetics, Point Mutation, Protein Binding, Serine Proteinase Inhibitors genetics, Trypsin Inhibitors genetics, Trypsin Inhibitors pharmacology, Blood Coagulation, Plant Proteins pharmacology, Serine Endopeptidases blood, Serine Proteinase Inhibitors pharmacology
- Abstract
A series of six CMTI I variants mutated in the P(2)-P(4)' region of the canonical binding loop were used to probe the role of single amino acid substitutions on binding to the following human proteinases involved in blood clotting: plasmin, plasma kallikrein, factors X(a) and XII(a). The mutants were expressed as fusion proteins with the LE1413 hydrophobic polypeptide in Escherichia coli, purified from inclusion bodies, followed by cyanobromide cleavage and refolding. The mutants inhibited the proteinases with the association constants in the range 10(3)-10(9) M(-1). Inhibition of plasma kallikrein and factors X(a) and XII(a) could be improved up to 30-fold by single mutations. In contrast, neither of the introduced mutations increased inhibitory properties of CMTI I against plasmin. Additionally, using two inhibitors of natural origin, CMTI I (P(1) Arg) and CPTI II (P(1) Lys), we determined the effect of Lys-->Arg on binding to four proteinases. With the exception of plasmin (no effect), P(1) Arg resulted in up to 30-fold stronger binding than P(1) Lys.
- Published
- 2000
- Full Text
- View/download PDF
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