35 results on '"Petersen JN"'
Search Results
2. Permeable reactive biobarriers for in situ Cr(VI) reduction: bench scale tests using Cellulomonas sp. strain ES6.
- Author
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Viamajala S, Peyton BM, Gerlach R, Sivaswamy V, Apel WA, and Petersen JN
- Subjects
- Bioreactors, Cellulomonas growth & development, Ferric Compounds metabolism, Oxidation-Reduction, Silicon Dioxide chemistry, Cellulomonas metabolism, Chromates metabolism
- Abstract
Chromate (Cr(VI)) reduction studies were performed in bench scale flow columns using the fermentative subsurface isolate Cellulomonas sp. strain ES6. In these tests, columns packed with either quartz sand or hydrous ferric oxide (HFO)-coated quartz sand, were inoculated with strain ES6 and fed nutrients to stimulate growth before nutrient-free Cr(VI) solutions were injected. Results show that in columns containing quartz sand, a continuous inflow of 2 mg/L Cr(VI) was reduced to below detection limits in the effluent for durations of up to 5.7 residence times after nutrient injection was discontinued proving the ability of strain ES6 to reduce chromate in the absence of an external electron donor. In the HFO-containing columns, Cr(VI) reduction was significantly prolonged and effluent Cr(VI) concentrations remained below detectable levels for periods of up to 66 residence times after nutrient injection was discontinued. Fe was detected in the effluent of the HFO-containing columns throughout the period of Cr(VI) removal indicating that the insoluble Fe(III) bearing solids were being continuously reduced to form soluble Fe(II) resulting in prolonged abiotic Cr(VI) reduction. Thus, growth of Cellulomonas within the soil columns resulted in formation of permeable reactive barriers that could reduce Cr(VI) and Fe(III) for extended periods even in the absence of external electron donors. Other bioremediation systems employing Fe(II)-mediated reactions require a continuous presence of external nutrients to regenerate Fe(II). After depletion of nutrients, contaminant removal within these systems occurs by reaction with surface-associated Fe(II) that can rapidly become inaccessible due to formation of crystalline Fe-minerals or other precipitates. The ability of fermentative organisms like Cellulomonas to reduce metals without continuous nutrient supply in the subsurface offers a viable and economical alternative technology for in situ remediation of Cr(VI)-contaminated groundwater through formation of permeable reactive biobarriers (PRBB).
- Published
- 2008
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3. [Horizontal transfer of catabolic plasmids in the process of naphthalene biodegradation in model soil systems].
- Author
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Akhmetov LI, Filonov AE, Puntus IF, Kosheleva IA, Nechaeva IA, Yonge DR, Petersen JN, and Boronin AM
- Subjects
- Biodegradation, Environmental, Gene Transfer, Horizontal, Plasmids metabolism, Pseudomonas fluorescens metabolism, Pseudomonas putida metabolism, Naphthalenes metabolism, Plasmids genetics, Pseudomonas fluorescens genetics, Pseudomonas putida genetics
- Abstract
The process of naphthalene degradation by indigenous, introduced, and transconjugant strains was studied in laboratory soil microcosms. Conjugation transfer of catabolic plasmids was demonstrated in naphthalene-contaminated soil. Both indigenous microorganisms and an introduced laboratory strain BS394 (pNF142::TnMod-OTc) served as donors of these plasmids. The indigenous bacterial degraders of naphthalene isolated from soil were identified as Pseudomonas putida and Pseudomonas fluorescens. The frequency of plasmid transfer in soil was 10(-5)-10(-4) per donor cell. The activity of the key enzymes of naphthalene biodegradation in indigenous and transconjugant strains was studied. Transconjugant strains harboring indigenous catabolic plasmids possessed high salicylate hydroxylase and low catechol-2,3-dioxygenase activities, in contrast to indigenous degraders, which had a high level of catechol-2,3-dioxygenase activity and a low level of salicylate hydroxylase. Naphthalene degradation in batch culture in liquid mineral medium was shown to accelerate due to cooperation of the indigenous naphthalene degrader P. fluorescens AP1 and the transconjugant strain P. putida KT2442 harboring the indigenous catabolic plasmid pAP35. The role of conjugative transfer of naphthalene biodegradation plasmids in acceleration of naphthalene degradation was demonstrated in laboratory soil microcosms.
- Published
- 2008
4. Isolation and characterization of Cr(VI) reducing Cellulomonas spp. from subsurface soils: implications for long-term chromate reduction.
- Author
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Viamajala S, Smith WA, Sani RK, Apel WA, Petersen JN, Neal AL, Roberto FF, Newby DT, and Peyton BM
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- Cellulomonas genetics, Chromates chemistry, Chromium chemistry, Phylogeny, Time Factors, Cellulomonas metabolism, Chromates metabolism, Chromium metabolism, Soil analysis
- Abstract
Microbial enrichments from Cr(VI) contaminated and uncontaminated US Department of Energy Hanford Site sediments produced Cr(VI) reducing consortia when grown in the presence of Cr(VI) with acetate, D-xylose or glycerol as a carbon and energy source. Eight of the nine isolates from the consortia were Gram positive and four of these were identified by 16S rRNA sequence homology and membrane fatty acid composition as belonging to the genus Cellulomonas. Two strains, ES6 and WS01, were further examined for their ability to reduce Cr(VI) under growth and non-growth conditions. During fermentative growth on D-xylose, ES6 and WS01 decreased aqueous Cr(VI) concentrations from 0.04 mM Cr(VI) to below the detection limit (0.002 mM Cr(VI)) in less than three days and retained their ability to reduce Cr(VI) even after four months of incubation. Washed ES6 and WS01 cells also reduced Cr(VI) under non-growth conditions for over four months, both with and without the presence of an exogenous electron donor. K-edge XANES spectroscopy confirmed the reduction of Cr(VI) to Cr(III). The ability to reduce Cr(VI) after growth had stopped and in the absence of an external electron donor, suggests that stimulation of these types of organisms may lead to effective long-term, in situ passive reactive barriers for Cr(VI) removal. Our results indicate that Cr(VI) reduction by indigenous Cellulomonas spp. may be a potential method of in situ bioremediation of Cr(VI) contaminated sediment and groundwater.
- Published
- 2007
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5. Solubilization, solution equilibria, and biodegradation of PAH's under thermophilic conditions.
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Viamajala S, Peyton BM, Richards LA, and Petersen JN
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- Bacillaceae isolation & purification, Fluorenes pharmacokinetics, Solubility, Temperature, Thermodynamics, Bacillaceae metabolism, Biodegradation, Environmental, Hot Temperature, Phenanthrenes pharmacokinetics, Soil Microbiology
- Abstract
Biodegradation rates of PAHs are typically low at mesophilic conditions and it is believed that the kinetics of degradation is controlled by PAH solubility and mass transfer rates. Solubility tests were performed on phenanthrene, fluorene and fluoranthene at 20 degrees C, 40 degrees C and 60 degrees C and, as expected, a significant increase in the equilibrium solubility concentration and of the rate of dissolution of these polycyclic aromatic hydrocarbons (PAHs) was observed with increasing temperature. A first-order model was used to describe the PAH dissolution kinetics and the thermodynamic property changes associated with the dissolution process (enthalpy, entropy and Gibb's free energy of solution) were evaluated. Further, other relevant thermodynamic properties for these PAHs, including the activity coefficients at infinite dilution, Henry's law constants and octanol-water partition coefficients, were calculated in the temperature range 20-60 degrees C. In parallel with the dissolution studies, three thermophilic Geobacilli were isolated from compost that grew on phenanthrene at 60 degrees C and degraded the PAH more rapidly than other reported mesophiles. Our results show that while solubilization rates of PAHs are significantly enhanced at elevated temperatures, the biodegradation of PAHs under thermophilic conditions is likely mass transfer limited due to enhanced degradation rates.
- Published
- 2007
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6. Selenite reduction by a denitrifying culture: batch- and packed-bed reactor studies.
- Author
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Viamajala S, Bereded-Samuel Y, Apel WA, and Petersen JN
- Subjects
- Acetates metabolism, Bacteria ultrastructure, Fuel Oils microbiology, Microscopy, Electron, Transmission methods, Oxidation-Reduction, Waste Management methods, Bacteria metabolism, Bioreactors microbiology, Nitrites metabolism, Sodium Selenite metabolism
- Abstract
Selenite reduction by a bacterial consortium enriched from an oil refinery waste sludge was studied under denitrifying conditions using acetate as the electron donor. Fed-batch studies with nitrate as the primary electron acceptor showed that accumulation of nitrite led to a decrease in the extent of selenite reduction. Also, when nitrite was added as the primary electron acceptor, rapid selenite reduction was observed only after nitrite was significantly depleted from the medium. These results indicate that selenite reduction was inhibited at high nitrite concentrations. In addition to batch experiments, continuous-flow selenite reduction experiments were performed in packed-bed columns using immobilized enrichment cultures. These experiments were carried out in three phases: in phase I, a continuous nitrate feed with different inlet selenite concentration was applied; in phase II, nitrate was fed in a pulsed fashion; and in phase III, nitrate was fed in a continuous mode but at much lower concentrations than the other two phases. During the phase I experiments, little selenite was removed from the influent. However, when the column was operated in the pulse feed strategy (phase II) or in the continuous mode with low nitrate levels (phase III), significant quantities of selenium were removed from solution and retained in the immobilization matrix in the column. Thus, immobilized denitrifying cultures can be effective in removing selenium from waste streams, but nitrate-limited operating conditions might be required.
- Published
- 2006
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7. Toxic effects of chromium(VI) on anaerobic and aerobic growth of Shewanella oneidensis MR-1.
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Viamajala S, Peyton BM, Sani RK, Apel WA, and Petersen JN
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- Adaptation, Physiological drug effects, Aerobiosis drug effects, Anaerobiosis drug effects, Cell Division drug effects, Cell Division physiology, Dose-Response Relationship, Drug, Shewanella cytology, Chromium toxicity, Shewanella drug effects, Shewanella growth & development
- Abstract
Cr(VI) was added to early- and mid-log-phase Shewanella oneidensis (S. oneidensis) MR-1 cultures to study the physiological state-dependent toxicity of Cr(VI). Cr(VI) reduction and culture growth were measured during and after Cr(VI) reduction. Inhibition of growth was observed when Cr(VI) was added to cultures of MR-1 growing aerobically or anaerobically with fumarate as the terminal electron acceptor. Under anaerobic conditions, there was immediate cessation of growth upon addition of Cr(VI) in early- and mid-log-phase cultures. However, once Cr(VI) was reduced below detection limits (0.002 mM), the cultures resumed growth with normal cell yield values observed. In contrast to anaerobic MR-1 cultures, addition of Cr(VI) to aerobically growing cultures resulted in a gradual decrease of the growth rate. In addition, under aerobic conditions, lower cell yields were also observed with Cr(VI)-treated cultures when compared to cultures that were not exposed to Cr(VI). Differences in response to Cr(VI) between aerobically and anaerobically growing cultures indicate that Cr(VI) toxicity in MR-1 is dependent on the physiological growth condition of the culture. Cr(VI) reduction has been previously studied in Shewanella spp., and it has been proposed that Shewanella spp. may be used in Cr(VI) bioremediation systems. Studies of Shewanella spp. provide valuable information on the microbial physiology of dissimilatory metal reducing bacteria; however, our study indicates that S. oneidensis MR-1 is highly susceptible to growth inhibition by Cr(VI) toxicity, even at low concentrations [0.015 mM Cr(VI)].
- Published
- 2004
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8. Modeling chromate reduction in Shewanella oneidensis MR-1: development of a novel dual-enzyme kinetic model.
- Author
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Viamajala S, Peyton BM, and Petersen JN
- Subjects
- Cell Culture Techniques, Chromates analysis, Enzymes, Fumarates metabolism, Kinetics, Mathematics, Models, Biological, Nitrates metabolism, Oxidation-Reduction, Reproducibility of Results, Shewanella growth & development, Chromates metabolism, Shewanella metabolism
- Abstract
Chromate (Cr(VI)) reduction tests were performed with nitrate- and fumarate-grown stationary phase cultures of Shewanella oneidensis MR-1 (henceforth referred to as MR-1) and disappearance of Cr(VI) was monitored over time. A rapid initial decrease in Cr(VI) concentration was observed, which was followed by a slower, steady decrease. These observations appear to be consistent with our previous results indicating that Cr(VI) reduction in MR-1 involves at least two mechanisms (Viamajala et al., 2002b). Modeling of metal reduction kinetics is often based on single-enzyme Michaelis-Menten equations. However, these models are often developed using initial rates and do not always match actual reduction profiles. Based on the hypothesis that multiple Cr(VI) reduction mechanisms exist in MR-1, a model was developed to describe the kinetics of Cr(VI) reduction by two parallel mechanisms: (1) a rapid Cr(VI) reduction mechanism that was deactivated (or depleted) quickly, and (2) a slower mechanism that had a constant activity and was sustainable for a longer duration. Kinetic parameters were estimated by fitting experimental data, and model fits were found to correspond very closely to quantitative observations of Cr(VI) reduction by MR-1., (Copyright 2003 Wiley Periodicals, Inc.)
- Published
- 2003
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9. Cytotoxic potential of industrial strains of Bacillus sp.
- Author
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Pedersen PB, Bjørnvad ME, Rasmussen MD, and Petersen JN
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- Animals, Antibodies, Bacterial immunology, Bacillus cereus immunology, Bacillus cereus isolation & purification, Biological Assay, CHO Cells drug effects, CHO Cells metabolism, Cricetinae, Culture Media, Conditioned chemistry, Culture Media, Conditioned toxicity, Dose-Response Relationship, Drug, Enterotoxins toxicity, Mesocricetus, Tetrazolium Salts metabolism, Thiazoles metabolism, Bacillus cereus pathogenicity, Enterotoxins analysis, Environmental Microbiology
- Abstract
The cytotoxic potential of selected strains of Bacillus licheniformis, Bacillus amyloliquefaciens, and Bacillus subtilis, used in the production of industrial enzyme products, has been assessed. Cytotoxicity was determined in Chinese hamster ovary (CHO-K1) cells by measuring total cellular metabolic activity using the tetrazolium salt 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT). Initially the MTT assay was validated against toxigenic strains of Bacillus cereus, to define the exact criteria for a toxigenic versus a nontoxigenic response. The assay proved sensitive to culture broths of both a diarrheagenic strain and an emetic strain of B. cereus. The enzyme-producing strains tested were nontoxic to CHO-K1 cells. Additionally it was demonstrated that our industrial strains did not react with antibodies against B. cereus enterotoxins by use of commercial antibody-based kits from Oxoid and Tecra. A short survey of the literature concerning the toxigenic potential of species within the subtilis group is included, as is a database search of known B. cereus enterotoxins against B. subtilis and B. licheniformis DNA sequences., (Copyright 2002 Elsevier Science (USA))
- Published
- 2002
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10. Dissimilatory reduction of Cr(VI), Fe(III), and U(VI) by Cellulomonas isolates.
- Author
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Sani RK, Peyton BM, Smith WA, Apel WA, and Petersen JN
- Subjects
- Anaerobiosis, Cellulomonas isolation & purification, Oxidation-Reduction, Cellulomonas metabolism, Chromium metabolism, Iron metabolism, Uranium metabolism
- Abstract
The reduction of Cr(VI), Fe(III), and U(VI) was studied using three recently isolated environmental Cellulomonas sp. (WS01, WS18, and ES5) and a known Cellulomonas strain ( Cellulomonas flavigena ATCC 482) under anaerobic, non-growth conditions. In all cases, these cultures were observed to reduce Cr(VI), Fe(III), and U(VI). In 100 h, with lactate as electron donor, the Cellulomonas isolates (500 mg/l total cell protein) reduced nitrilotriacetic acid chelated Fe(III) [Fe(III)-NTA] from 5 mM to less than 2.2 mM, Cr(VI) from 0.2 mM to less than 0.001 mM, and U(VI) from 0.2 mM to less than 0.12 mM. All Cellulomonas isolates also reduced Cr(VI), Fe(III), and U(VI) in the absence of lactate, while no metal reduction was observed in either the cell-free or heat-killed cell controls. This is the first report of Cellulomonas sp. reducing Fe(III) and U(VI). Further, this is the first report of Cellulomonas spp. coupling the oxidation of lactate, or other unknown electron donors in the absence of lactate, to the reduction of Cr(VI), Fe(III), and U(VI).
- Published
- 2002
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11. Chromate/nitrite interactions in Shewanella oneidensis MR-1: evidence for multiple hexavalent chromium [Cr(VI)] reduction mechanisms dependent on physiological growth conditions.
- Author
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Viamajala S, Peyton BM, Apel WA, and Petersen JN
- Subjects
- Chromium analysis, Drug Interactions, Logistic Models, Nitrites analysis, Nitrites pharmacology, Oxidation-Reduction, Sensitivity and Specificity, Shewanella putrefaciens drug effects, Shewanella putrefaciens growth & development, Chromium metabolism, Fumarates metabolism, Nitrates metabolism, Nitrites metabolism, Shewanella putrefaciens metabolism
- Abstract
Inhibition of hexavalent chromium [Cr(VI)] reduction due to nitrate and nitrite was observed during tests with Shewanella oneidensis MR-1 (previously named Shewanella putrefaciens MR-1 and henceforth referred to as MR-1). Initial Cr(VI) reduction rates were measured at various nitrite concentrations, and a mixed inhibition kinetic model was used to determine the kinetic parameters-maximum Cr(VI) reduction rate and inhibition constant [V(max,Cr(VI)) and K(i,Cr(VI))]. Values of V(max,Cr(VI)) and K(i,Cr(VI)) obtained with MR-1 cultures grown under denitrifying conditions were observed to be significantly different from the values obtained when the cultures were grown with fumarate as the terminal electron acceptor. It was also observed that a single V(max,Cr(VI)) and K(i,Cr(VI)) did not adequately describe the inhibition kinetics of either nitrate-grown or fumarate-grown cultures. The inhibition patterns indicate that Cr(VI) reduction in MR-1 is likely not limited to a single pathway, but occurs via different mechanisms some of which are dependent on growth conditions. Inhibition of nitrite reduction due to the presence of Cr(VI) was also studied, and the kinetic parameters V(max,NO2) and K(i,NO2) were determined. It was observed that these coefficients also differed significantly between MR-1 grown under denitrifying conditions and fumarate reducing conditions. The inhibition studies suggest the involvement of nitrite reductase in Cr(VI) reduction. Because nitrite reduction is part of the anaerobic respiration process, inhibition due to Cr(VI) might be a result of interaction with the components of the anaerobic respiration pathway such as nitrite reductase. Also, differences in the degree of inhibition of nitrite reduction activity by chromate at different growth conditions suggest that the toxicity mechanism of Cr(VI) might also be dependent on the conditions of growth. Cr(VI) reduction has been shown to occur via different pathways, but to our knowledge, multiple pathways within a single organism leading to Cr(VI) reduction has not been reported previously., (Copyright 2002 Wiley Periodicals, Inc.)
- Published
- 2002
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12. A bacterial flavin reductase system reduces chromate to a soluble chromium(III)-NAD(+) complex.
- Author
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Puzon GJ, Petersen JN, Roberts AG, Kramer DM, and Xun L
- Subjects
- Chromatography, Gel, Chromatography, High Pressure Liquid, Electron Spin Resonance Spectroscopy, Escherichia coli enzymology, FMN Reductase, Spectrophotometry, Atomic, Chromates metabolism, NAD metabolism, NADH, NADPH Oxidoreductases metabolism
- Abstract
Biological reduction of carcinogenic chromate has been extensively studied in eukaryotic cells partly because the reduction produces stable chromium(III)-DNA adducts, which are mutagenic. Microbial reduction of chromate has been studied for bioremediation purposes, but little is known about the reduction mechanism. In eukaryotic cells chromate is mainly reduced non-enzymatically by ascorbate, which is usually absent in bacterial cells. We have characterized the reduction of chromate by a flavin reductase (Fre) from Escherichia coli with flavins. The Fre-flavin system rapidly reduced chromate, whereas chemical reduction by NADH and glutathione was very slow. Thus, enzymatic chromate reduction is likely the dominant mechanism in bacterial cells. Furthermore, the end-product was a soluble and stable Cr(III)-NAD(+) complex, instead of Cr(III) precipitate. Since intracellularly generated Cr(III) forms adducts with DNA, protein, glutathione, and ascorbate in eukaryotic cells, we suggest that the produced Cr(III) is primarily complexed to NAD(+), DNA, and other cellular components inside bacteria.
- Published
- 2002
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13. Chromate reduction in Shewanella oneidensis MR-1 is an inducible process associated with anaerobic growth.
- Author
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Viamajala S, Peyton BM, Apel WA, and Petersen JN
- Subjects
- Anaerobiosis physiology, Chromium analysis, Models, Chemical, Nitrites pharmacology, Oxidation-Reduction, Shewanella drug effects, Shewanella genetics, Chromium metabolism, Fumarates metabolism, Nitrates metabolism, Shewanella growth & development, Shewanella metabolism
- Abstract
Cr(VI) reduction was observed during tests with Shewanella oneidensis MR-1 (previously named S. putrefaciens MR-1) while being grown with nitrate or fumarate as electron acceptor and lactate as electron donor. From the onset of anoxic growth on fumarate, we measured a gradual and progressive increase in the specific Cr(VI) reduction rate with incubation time until a maximum was reached at late exponential/early stationary phase. Under denitrifying conditions, the specific Cr(VI) reduction rate was inhibited by nitrite, which is produced during nitrate reduction. However, once nitrite was consumed, the specific reduction rate increased until a maximum was reached, again during the late exponential/early stationary phase. Thus, under both fumarate- and nitrate-reducing conditions, an increase in the specific Cr(VI) reduction rate was observed as the microorganisms transition from oxic to anoxic growth conditions, presumably as a result of induction of enzyme systems capable of reducing Cr(VI). Although Cr(VI) reduction has been studied in MR-1 and in other facultative bacteria under both oxic and anoxic conditions, a transition in specific reduction rates based on physiological conditions during growth is a novel finding. Such physiological responses provide information required for optimizing the operation of in situ systems for remediating groundwater contaminated with heavy metals and radionuclides, especially those that are characterized by temporal variations in oxygen content. Moreover, such information may point the way to a better understanding of the cellular processes used by soil bacteria to accomplish Cr(VI) reduction.
- Published
- 2002
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14. Nitrate reduction with Halomonas campisalis. Kinetics of denitrification at pH 9 and 12.5% NaCl.
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Peyton BM, Mormile MR, and Petersen JN
- Subjects
- Hydrogen-Ion Concentration, Ion Exchange Resins, Kinetics, Osmosis, Sodium Chloride chemistry, Waste Disposal, Fluid, Halomonas physiology, Nitrates metabolism
- Abstract
Regeneration of ion exchange resins with NaCl produces brine containing high concentrations of nitrate that can be difficult to remove using standard biological, physical, or chemical technologies. In this study. Halomonas campisalis (ATCC #700597) (Mormile et al., 1999) was shown to completely reduce nitrate at 125 g/L NaCl and pH 9. This organism was also used in experiments to determine nitrate-reduction rates and biomass yields. Kinetic parameters were measured separately with glycerol, lactate. acetate, ethanol, and methanol. The specific nitrate-reduction rate coefficient was highest in cultures amended with acetate, while lactate and glycerol (a natural osmoticum in hypersaline environments) had lower reduction rates. No evidence of nitrate reduction was observed when ethanol or methanol was provided as an electron donor. Kinetic modeling provided values for nitrate and nitrite-reduction rate coefficients and for biomass yields. Measured rates and yields were similar to reported parameters obtained from non-halophilic nitrate-reducing cultures under low salt concentrations. Therefore, for highly saline solutions, the use of halophiles to selectively remove nitrate from these brines may represent a viable treatment option.
- Published
- 2001
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15. Successive identification of biodegradation rates for multiple sequentially reactive contaminants in groundwater.
- Author
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Suna Y, Petersen JN, and Bearc J
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- Biodegradation, Environmental, Chemistry Techniques, Analytical, Models, Theoretical, Soil Pollutants metabolism, Water Pollutants, Chemical metabolism
- Abstract
At the field scale, the biodegradation rate is usually estimated from analytical solutions to single species transport with first-order reactions, using measured data as input. Because many contaminants, e.g., chlorinated solvents, are degraded in a sequential pattern, with degradation products further reacting to produce new species, it is of great interest to quantify the transformation rate of every reaction. The conventional inverse solutions for identifying the transformation rates are limited to single species problems. In the present study, we propose a successive optimization approach to identify the biodegradation rate for each species by using a previously developed analytical solution to multi-species first-order reactive transport using data obtained at the field scale. By specifying a link between analytical solutions to sequentially reactive transport problems and optimization methods and assuming constant transport parameters (velocity, dispersivities, and retardation factors), the first-order transformation rates are optimized successively from parent species to its daughter species.
- Published
- 2001
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16. Biotransformation of carbon tetrachloride by various acetate- and nitrate-limited denitrifying consortia
- Author
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Sherwood JL, Petersen JN, and Skeen RS
- Abstract
Fed-batch experiments were performed to determine the carbon tetrachloride (CT)-degrading ability of three denitrifying consortia cultured from sites not contaminated with CT. A mathematical model was used to quantify the rates of CT transformation by the consortia under both acetate-limiting and nitrate-limiting conditions. A rate constant for CT transformation on a cellular protein basis and the fraction of degraded CT transformed to chloroform (CF) were determined for each consortium by optimizing the model to fit the experimental data. The parameters for these experiments were statistically compared to those obtained for previous experiments with a denitrifying consortium cultured from an aquifer soil sample from the US Department of Energy Hanford site in southeastern Washington state. Results of F-test analysis indicated the rate of CT transformation and the production of CF both were functions of the limiting nutrient. Under nitrate-limited conditions, the rate constant for CT transformation for all four consortia was about 30 L/gmol/min and approximately 50% of the CT transformed was converted to CF. When acetate was the limiting nutrient, the rate constant for CT transformation was approximately 8 L/gmol/min and the CF yield decreased to about 25%. These results imply the ability to degrade CT may be inherent to some denitrifying organisms, regardless of previous exposure to CT. Copyright 1999 John Wiley & Sons, Inc.
- Published
- 1999
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17. Selenium reduction by a denitrifying consortium.
- Author
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Rege MA, Yonge DR, Mendoza DP, Petersen JN, Bereded-Samuel Y, Johnstone DL, Apel WA, and Barnes JM
- Abstract
A denitrifying bacterial consortium obtained from the Pullman, Washington wastewater treatment facility was enriched under denitrifying conditions and its ability to reduce selenite and selenate was studied. Replicate experiments at two different experimental conditions were performed. All experiments were performed under electron-acceptor limiting conditions, with acetate as the carbon source and nitrate the electron acceptor. In the first set of experiments, selenite was present, whereas, in the second set, selenate was added. A significant lag period of approximately 150 h was necessary before selenite or selenate reduction was observed. During this lag period, nitrate and nitrite use was observed. Once selenite or selenate reduction had started, nitrate and nitrite reduction was concomitant with selenium species reduction. Trace amounts of selenite were detected during the selenate reduction study. Analysis of the data indicates that, once selenium species reduction was induced, the rate of reduction was proportional to the selenium species concentration and to the biomass concentration. Furthermore, at similar biomass and contaminant concentrations, selenite reduction is approximately four times faster than selenate reduction. Copyright 1999 John Wiley & Sons, Inc.
- Published
- 1999
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18. Biodegradation of 1,1,1-trichloroethane by a carbon tetrachloride-degrading denitrifying consortium
- Author
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Sherwood JL, Petersen JN, and Skeen RS
- Abstract
A denitrifying consortium capable of degrading carbon tetrachloride (CT) was shown to also degrade 1,1,1-trichloroethane (TCA). Fed-batch experiments demonstrated that the specific rate of TCA degradation by the consortium was comparable to the specific rate of CT degradation (approximately 0.01 L/gmol/min) and was independent of the limiting nutrient. Although previous work demonstrated that 4-50% of CT transformed by the consortium was converted to chloroform (CF), no reductive dechlorination products were detected during TCA degradation, regardless of the limiting nutrient. The lack of chlorinated TCA degradation products implies that the denitrifying consortium possesses an alternate pathway for the degradation of chlorinated solvents which does not involve reductive dechlorination. Copyright 1998 John Wiley & Sons, Inc.
- Published
- 1998
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19. Bacterial reduction of chromium.
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Schmieman EA, Petersen JN, Yonge DR, Johnstone DL, Bereded-Samuel Y, Apel WA, and Turick CE
- Abstract
A mixed culture was enriched from surface soil obtained from an eastern United States site highly contaminated with chromate. Growth of the culture was inhibited by a chromium concentration of 12 mg/L. Another mixed culture was enriched from subsurface soil obtained from the Hanford reservation, at the fringe of a chromate plume. The enrichment medium was minimal salts solution augmented with acetate as the carbon source, nitrate as the terminal electron acceptor, and various levels of chromate. This mixed culture exhibited chromate tolerance, but not chromate reduction capability, when growing anaerobically on this medium. However, this culture did exhibit chromate reduction capability when growing anaerobically on TSB. Growth of this culture was not inhibited by a chromium concentration of 12 mg/L. Mixed cultures exhibited decreasing diversity with increasing levels of chromate in the enrichment medium. An in situ bioremediation strategy is suggested for chromate contaminated soil and groundwater.
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- 1997
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20. Effects of nitrate and acetate availability on chloroform production during carbon tetrachloride destruction.
- Author
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Sherwood JL, Petersen JN, Skeen RS, and Valentine NB
- Abstract
Fed batch experiments were performed to test the effects of electron donor and electron acceptor availability on the production of chloroform (CF) during carbon tetrachloride (CT) destruction by a denitrifying bacterial consortium. In one series of tests, acetate (electron donor) was present in excess while nitrate and nitrite (electron acceptor) were limiting. In the other series of tests, acetate was the limiting nutrient, and nitrate and nitrite were in excess. Under nitrate limiting conditions, 50% (+/-17%) of the CT transformed by the microorganisms was converted to CF. However, under acetate limiting conditions, only 4% (+/-4%) of the CT that was degraded appeared as CF. Previous research had suggested that denitrifying bacteria can degrade CT via two competing pathways. One of these pathways produces CF as the predominant end product. The second pathway produces CO(2) as the primary end product. The results shown here suggest that the first pathway is dominant when nitrate and nitrite are depleted while the second pathway, which produces little CF, dominates when nitrate or nitrite are available.
- Published
- 1996
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21. Development of a predictive description of an immobilized-cell, three-phase, fluidized-bed bioreactor.
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Petersen JN and Davison BH
- Abstract
A fully predictive mathematical description of a three-phase, tapered, fluidized-bed bioreactor is developed. This mathematical model includes the effects of the tapered bed, variable dispersion coefficient, and variable solid holdup upon the concentration profiles developed in the bed. In addition, the effect of the concentration profile which is developed inside the biocatalyst bead is included by means of an effectiveness factor calculation. Using accepted correlations for the dispersion coefficient and for the liquid, gas, and solid holdup in the bed, the model is fully predictive. The model was found to adequately predict experimental obtained concentration profiles. Then, the model was used to examine the various phase holdups through the bed and the degree to which the dispersion coefficient varied through the bed. The effect of changes in these calculated variables upon the reaction rate is discussed. (c) 1995 John Wiley & Sons, Inc.
- Published
- 1995
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22. Kinetics of nitrate inhibition of carbon tetrachloride transformation by a denitrifying consortia.
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Skeen RS, Valentine NB, Hooker BS, and Petersen JN
- Abstract
The kinetics of nitrate inhibition of carbon tetrachloride (CT) transformation were examined using a denitrifying consortium. Comparison of data from fed-batch experiments to the model reported by Hooker et al. indicate that the inhibition constant ranges between 3.2 and 21 mg/L, with an average of 8.8 mg/L. This range is much lower than the previously reported value of 169 mg/L. Simulations using the corrected parameter accurately reflect this new data and the data reported by Hooker et al. In contrast, the earlier reported coefficient value does not reflect the data reported in this work. (c) 1995 John Wiley & Sons, Inc.
- Published
- 1995
- Full Text
- View/download PDF
23. Biological destruction of CCI(4): II. Kinetic modeling.
- Author
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Hooker BS, Skeen RS, and Petersen JN
- Abstract
A denitrifying consortium capable of transforming carbon tetrachloride (CCI(4)) was cultured from an aquifer soil sample from the U.S. Department of Energy's Hanford Site in southeastern Washington State. A mathematical description of the kinetics of CCI(4) destruction by this microbial consortium is presented, and its prediction are compared to experimental data. The model successfully predicted the concentrations of acetate, nitrate, nitrite, biomass, and CCI(4) for all 12 experiments (a total of 60 concentration-vs.-time data sets). In addition, no statistically significant interactions exist between parameter values and individual test conditions. The ability of the model to predict the results of a treatability test for CCI(4) degradation in Hanford groundwater, without adjusting any model parameters, is discussed. (c) 1994 John Wiley & Sons, Inc.
- Published
- 1994
- Full Text
- View/download PDF
24. Biological destruction of CCl(4): I. Experimental design and data.
- Author
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Petersen JN, Skeen RS, Amos KM, and Hooker BS
- Abstract
A denitrifying consortium capable of transforming carbon tetrachloride (CCl(4)) was cultured from aquifer sediment from the U.S. Department of Energy's Hanford Site in southeastern Washington State. To understand the kinetics of the biological destruction of CCl(4) by these microbes, a set of experiments, the conditions of which were chosen according to a fractional factorial experimental design, were completed. This article reports on the experimental design along with the results for CCl(4), biomass, acetate, nitrate, and nitrite concentrations. These data indicate that growth is inhibited by high nitrite concentrations, whereas CCl(4) degradation is slowed by the presence of nitrate and/or nitrite. (c) 1994 John Wiley & Sons, Inc.
- Published
- 1994
- Full Text
- View/download PDF
25. Size changes associated with metal adsorption onto modified bone gelatin beads.
- Author
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Petersen JN, Davison BH, Scott CD, and Blankship SL
- Abstract
Significant quantities of heavy metals will adsorb onto modified bone gelatin beads. As this adsorption occurs, the bead can undergo a substantial volume change. Research has shown that the equilibrium bead diameter was a function of the solution pH and the ion concentration in the solution. Here, we demonstrate that under certain conditions, the volume of the beads that absorbed the metal was only 35% of the bead volume when no metal was adsorbed. By taking advantages of these size changes, a fluidized-bed separator can be operated such that natural segregation of loaded beads occurs. This phenomenon may facilitate the design of continous separators for the recovery and concentration of heavy-metal-contaminated waters. These concepts are demonstrated using Cu(2+) adsorption onto such beads.
- Published
- 1991
- Full Text
- View/download PDF
26. Minimizing the errors associated with the determination of effective diffusion coefficients when using spherical cell immobilization matrices.
- Author
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Petersen JN, Davison BH, and Scott CD
- Abstract
Gel materials are often used to entrap biological catalysts. Several experimental methods have been proposed to estimate the diffusion coefficient of important chemical species within these materials. An error analysis for the bead method was performed and, contrary to previously reported results, when proper experimental conditions were employed, the error associated with the bead method was similar to that obtained using the other common methods.
- Published
- 1991
- Full Text
- View/download PDF
27. Control and optimization of apheresis procedures in a COBE 2997 cell separator.
- Author
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Wooten SL, Petersen JN, and Van Wie BJ
- Subjects
- Animals, Cattle, Computers, Efficiency, Equipment Design, Models, Biological, Plasmapheresis, Reference Values, Blood Component Removal instrumentation, Cell Separation instrumentation
- Abstract
To obtain more efficient operation of a COBE Model 2997 clinical cell separator using either a Single Stage II (SS II) or a Dual Stage separation chamber, modifications were made to allow complete computer control. Product cell density was detected using an optical sensor and controlled by automatic feedback through a microcomputer interface. Control was accomplished by automatically adjusting the red blood cell (RBC) and plasma product flow rates using a proportional-integral (PI) algorithm. Results show that, using either chamber, the product cell density can be maintained at a preselected value for extended periods of time without operator intervention. This system allowed investigation of optimal operating regions for plateletpheresis and leukapheresis procedures. The effects of centrifuge rpm and controller set point on centrifuge operation were investigated using a second order factorial experimental design. Theoretical significance of model parameters was assessed with the aid of a hindered settling model and simple reasoning about the interface position relative to the collection port. The results suggest that, in either chamber, the optimum operating region for plateletpheresis procedures occurs at moderate controller set points and high centrifuge rpm. The resultant operating efficiency and product purity values are approximately 63 percent and 0.65 respectively in the SS II chamber and approximately 70 percent and 0.70 respectively in the Dual Chamber. In the SS II, the optimum operating region for leukapheresis procedures occurred at high controller set point values for any centrifuge rpm above 1200 with an operating efficiency near 100 percent. However, in the Dual Chamber, the optimum operating region for leukapheresis procedures occurred at high controller set points and high centrifuge rpm's, again providing an operating efficiency near 100 percent.
- Published
- 1991
- Full Text
- View/download PDF
28. Dynamic on-line optimization of a bioreactor.
- Author
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Petersen JN and Whyatt GA
- Abstract
An algorithm was developed which uses recursive least squares to identify a dynamic, discrete time model of a poorly defined system and uses both the dynamic and static portions of the identified model for on-line optimization. To test this new algorithm, a model of an continuous biochemical reactor was used as the "process." The objective, here, was to maximize ethanol production from the reactor by manipulating the feed rate to the reactor. The new algorithm, which uses dynamic information, was found to be superior to previously published algorithms which use only the steady-state portion of the identified model.
- Published
- 1990
- Full Text
- View/download PDF
29. An experimental and theoretical study of temperature regulation in the immersed dog.
- Author
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Petersen JN and Seagrave RC
- Subjects
- Animals, Brain physiology, Cold Temperature, Dogs, Immersion, Male, Nose innervation, Therapeutic Irrigation, Thermoreceptors physiology, Body Temperature Regulation, Hyperthermia, Induced instrumentation
- Published
- 1983
- Full Text
- View/download PDF
30. Dansk kiropraktor kursus: an historical perspective and overview of the Danish Chiropractors' School.
- Author
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Simonsen IH, Deltoff MN, Johansen KK, and Petersen JN
- Subjects
- Denmark, History, Modern 1601-, Chiropractic history, Education, Medical history
- Published
- 1989
31. Digitally controlled system for reproducing blood flow waveforms in vitro.
- Author
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Petersen JN
- Subjects
- Regional Blood Flow, Rheology, Blood Physiological Phenomena, Computers, Microcomputers, Models, Cardiovascular
- Published
- 1984
- Full Text
- View/download PDF
32. An improved method for process identification in the frequency domain.
- Author
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Tu CH and Petersen JN
- Subjects
- Regression Analysis, Research Design, Computers, Statistics as Topic
- Published
- 1983
- Full Text
- View/download PDF
33. The effects of RPM and recycle on separation efficiency in a clinical blood cell centrifuge.
- Author
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Drumheller PD, Van Wie BJ, Petersen JN, Oxford RJ, and Schneider GW
- Subjects
- Animals, Biomedical Engineering, Cattle, Humans, Blood Cells, Cell Separation instrumentation, Centrifugation instrumentation
- Abstract
A COBE blood cell centrifuge, model 2997 with a single stage channel, was modified to allow computer controlled sampling, and to allow recycle of red blood cells (RBCs) and plasma streams using bovine whole blood. The effects of recycle of the packed RBC and plasma product streams, and of the centrifuge RPM on platelet and white blood cell (WBC) separation efficiencies were quantified using a central composite factorial experimental design. These data were then fit using second order models. Both the model for the WBC separation efficiency and the model for the platelet separation efficiency predict that RPM has the greatest effect on separation efficiency and that RBC and plasma recycle have detrimental effects at moderate to low RPM, but have negligible impact on separation efficiency at high RPM.
- Published
- 1987
- Full Text
- View/download PDF
34. Injection of Air by the Lumbar Route in Diagnosis and Treatment.
- Author
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Petersen JN
- Published
- 1928
35. NEWER DRUGS IN THE TREATMENT OF EPILEPSY.
- Author
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Petersen JN and Keith HM
- Published
- 1940
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