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Knowledge of an animal's chronological age is crucial for understanding and predicting population demographics, survival and reproduction, but accurate age determination for many wild animals remains challenging. Previous methods to estimate age require invasive procedures, such as tooth extraction to analyse growth layers, which are difficult to carry out with large, mobile animals such as cetaceans. However, recent advances in epigenetic methods have opened new avenues for precise age determination. These ‘epigenetic clocks’ present a less invasive alternative and can provide age estimates with unprecedented accuracy. Here, we present a species-specific epigenetic clock based on skin tissue samples for a population of Indo-Pacific bottlenose dolphins (Tursiops aduncus) in Shark Bay, Western Australia. We measured methylation levels at 37,492 cytosine-guanine sites (CpG sites) in 165 samples using the mammalian methylation array. Chronological age estimates with an accuracy of ±1 year were available for 68 animals as part of a long-term behavioral study of this population. Using these samples with known age, we built an elastic net model with Leave-One-Out-Cross-Validation, which retained 43 CpG sites, providing an r = 0.86 and median absolute age error (MAE) = 2.1 years (5% of maximum age). This model was more accurate for our data than the previously published methylation clock based on skin samples of common bottlenose dolphins (T. truncatus: r = 0.83, MAE = 2.2) and the multi-species odontocete methylation clock (r = 0.68, MAE = 6.8), highlighting that species-specific clocks can have superior performance over those of multi-species assemblages. We further developed an epigenetic sex estimator, predicting sex with 100% accuracy. As age and sex are critical parameters for the study of animal populations, this clock and sex estimator will provide a useful tool for extracting life history information from skin samples rather than long-term observational data for f

OCTOPUS v.2 is an Open Geospatial Consortium (OGC) compliant web-enabled database that allows users to visualise, query, and download cosmogenic radionuclide, luminescence, and radiocarbon ages and denudation rates associated with erosional landscapes, Quaternary depositional landforms, and archaeological records, along with ancillary geospatial (vector and raster) data layers. The database follows the FAIR (Findability, Accessibility, Interoperability, and Reuse) data principles and is based on open-source software deployed on the Google Cloud Platform. Data stored in the database can be accessed via a custom-built web interface and via desktop geographic information system (GIS) applications that support OGC data access protocols. OCTOPUS v.2 hosts five major data collections. CRN Denudation and ExpAge consist of published cosmogenic 10Be and 26Al measurements in modern fluvial sediment and glacial samples respectively. Both collections have a global extent; however, in addition to geospatial vector layers, CRN Denudation also incorporates raster layers, including a digital elevation model, gradient raster, flow direction and flow accumulation rasters, atmospheric pressure raster, and CRN production scaling and topographic shielding factor rasters. SahulSed consists of published optically stimulated luminescence (OSL) and thermoluminescence (TL) ages for fluvial, aeolian, and lacustrine sedimentary records across the Australian mainland and Tasmania. SahulArch consists of published OSL, TL, and radiocarbon ages for archaeological records, and FosSahul consists of published late-Quaternary records of direct and indirect non-human vertebrate (mega)fauna fossil ages that have been systematically quality rated. Supporting data are comprehensive and include bibliographic, contextual, and sample-preparation- and measurement-related information. In the case of cosmogenic radionuclide data, OCTOPUS also includes all necessary information and input files for the recalculat

Conservation management of wildlife species should be underpinned by knowledge of their distribution and abundance, as well as impacts of human activities on their populations and habitats. Common dolphins (Delphinus delphis) are subject to incidental capture in a range of Australia’s commercial fisheries including gill netting, purse seining and mid-water trawling. The impact these fishery interactions have on common dolphin populations is uncertain, as estimates of abundance are lacking, particularly for the segments of the populations at risk of bycatch and in greater need of protection. Here we used double-observer platform aerial surveys and mark-recapture distance sampling methods to estimate the abundance of common dolphins in 2011 over an area of 42,438 km2 in central South Australia, where incidental mortality of common dolphins due to fisheries bycatch is the highest. We also used the potential biological removal (PBR) method to estimate sustainable levels of human-caused mortality for this segment of the population. The estimated abundance of common dolphins was 21,733 (CV = 0.25; 95% CI = 13,809–34,203) in austral summer/autumn and 26,504 in winter/spring (CV = 0.19; 95% CI = 19,488–36,046). Annual PBR estimates, assuming a conservative maximum population growth rate of Rmax = 0.02 and a recovery factor of Fr = 0.5 for species of unknown conservation status, ranged from 95 (summer/autumn) to 120 dolphins (winter/spring), and from 189 (summer/autumn) to 239 dolphins (winter/spring) with an Rmax = 0.04. Our results indicate that common dolphins are an abundant dolphin species in waters over the central South Australian continental shelf (up to 100 m deep). Based on the 2011 abundance estimates of this species, the highest estimated bycatch of common dolphins (423 mortalities in 2004/05) in the southern Australian region exceeded the precautionary PBR estimates for this population segment. Recent bycatch levels appear to be below PBR estimates, but low obse

Climate impacts affect marine ecosystems worldwide with island nations such as New Zealand being extremely vulnerable because of their socio-economic and cultural dependence on the marine and costal environment. Cetaceans are ideal indicator species of ecosystem change and ocean health given their extended life span and cosmopolitan distribution, but limited data availability prevents anticipating change in distribution under future climate changes. We projected the range shifts of a key odontocete and mysticete species (Physeter macrocephalus and Balaenoptera musculus) in 2100 relative to present day in New Zealand waters, using an ensemble modelling approach, under three climate change scenarios of different severity. The results show a latitudinal shift in suitable habitat for both whale species, increasing in magnitude with severity of sea surface temperature warming. The most severe climate change scenario tested generated 56% and 42% loss and decrease of currently suitable habitat for sperm and blue whales, respectively, mostly in New Zealand’s northern waters. These predicted changes will have a strong impact on the ecosystem functioning and services in New Zealand’s northern waters but also in coastal areas (critical for the species’ foraging and survival). Not only do these simulated range shifts help to identify future potential climate refugia to mitigate a global warming, they also generate a range of socioeconomic consequences for island nations relying on wildlife tourism, industry, and environmental protection.

The avian beak is a key morphological trait used for foraging. If parasites alter beak shape, we may expect changes in host foraging behaviour. Larvae of the avian vampire fly Philornis downsi cause naris enlargement in Darwin's finch nestlings when first and second instar larvae consume keratin, blood and tissue from inside the beak of the developing host. This naris malformation persists into adulthood, where nares that are >15% of total beak length are considered enlarged. We measured effects of parasite-induced naris enlargement on foraging behaviour, foraging niche overlap and body condition in Darwin's finches on Floreana Island. Foraging behaviour was ranked by the stress per foraging technique exerted on the beak and ranged from least stress for ‘gleaning’ to most stress for ‘chip off bark’. Naris enlargement occurred in 34% of adult birds. The most common foraging technique differed among species: medium tree finches (Camarhynchus pauper) often chipped off bark to extract subsurface prey, small tree finches (C. parvulus) often gleaned surface prey from foliage, hybrids gleaned prey from bark and foliage, and small ground finches (Geospiza fuliginosa) mostly foraged on the ground. In C. pauper, birds with naris enlargement did more gleaning and less subsurface prey excavation. Foraging niche across species was most similar in birds with naris enlargement. Finally, body condition was lower in insectivorous tree finches with malformed beaks. A novel aspect of this study is the idea that parasite-induced alterations to phenotype affect ecological processes and interspecific interactions at large temporal and spatial scales. The parasitism occurs early in life but the ecological effects of this parasitism, if causative, are happening later.

Dredging is an excavation activity used worldwide in marine and freshwater environments to create, deepen, and maintain waterways, harbours, channels, locks, docks, berths, river entrances, and approaches to ports and boat ramps. However, dredging impacts on marine life, including marine mammals (cetaceans, pinnipeds, and sirenians), remain largely unknown. Here we quantified the effect of dredging operations in 2005 and 2019 on the occurrence of Indo-Pacific bottlenose dolphins (Tursiops aduncus) and long-nosed fur seals (Arctocephalus forsteri) in the Port River estuary, a highly urbanized estuary in Adelaide, South Australia. We applied generalised linear models to two long-term sighting datasets (dolphins: 1992–2020, fur seals: 2010–2020), to analyse changes in sighting rates as a function of dredging operations, season, rainfall, and sea surface temperature. We showed that the fluctuations in both dolphin and fur seal occurrences were not correlated with dredging operations, whereas sea surface temperature and season were stronger predictors of both species sighting rates (with seals more prevalent during the colder months, and dolphins in summer). Given the highly industrial environment of the Port River estuary, it is possible that animals in this area are habituated to high noise levels and therefore were not disturbed by dredging operations. Future research would benefit from analysing short-term effects of dredging operations on behaviour, movement patterns and habitat use to determine effects of possible habitat alteration caused by dredging.

Species occurring in sympatry and relying on similar and limited resources may partition resource use to avoid overlap and interspecific competition. Aotearoa, New Zealand hosts an extraordinarily rich marine megafauna, including 50% of the world’s cetacean species. In this study, we used carbon and nitrogen stable isotopes as ecological tracers to investigate isotopic niche overlap between 21 odontocete (toothed whale) species inhabiting neritic, mesopelagic, and bathypelagic waters. Results showed a clear niche separation for the bathypelagic Gray’s beaked whales (Mesoplodon grayi) and sperm whales (Physeter macrocephalus), but high isotopic niche overlap and potential interspecific competition for neritic and mesopelagic species. For these species, competition could be reduced via temporal or finer-scale spatial segregation or differences in foraging behaviour. This study represents the first insights into the coexistence of odontocetes in a biodiverse hotspot. The data presented here provide a critical baseline to a system already ongoing ecosystem change via ocean warming and subsequent effects on prey abundance and distributions.

Extinctions stemming from environmental change often trigger trophic cascades and coextinctions. Bottom–up cascades occur when changes in the primary producers in a network elicit flow-on effects to higher trophic levels. However, it remains unclear what determines a species' vulnerability to bottom–up cascades and whether such cascades were a large contributor to the megafauna extinctions that swept across several continents in the Late Pleistocene. The pathways to megafauna extinctions are particularly unclear for Sahul (landmass comprising Australia and New Guinea), where extinctions happened earlier than on other continents. We investigated the potential role of bottom–up trophic cascades in the megafauna extinctions in Late Pleistocene Sahul by first developing synthetic networks that varied in topology to identify how network position (trophic level, diet breadth, basal connections) influences vulnerability to bottom–up cascades. We then constructed pre-extinction (~80 ka) network models of the ecological community of Naracoorte, south-eastern Sahul, to assess whether the observed megafauna extinctions could be explained by bottom–up cascades. Synthetic networks showed that node vulnerability to bottom–up cascades decreased with increasing trophic level, diet breadth and basal connections. Extinct species in the Naracoorte community were more vulnerable overall to these cascades than were species that survived. The position of extinct species in the network – tending to be of low trophic level and therefore having relatively narrow diet breadths and fewer connections to plants – made them vulnerable. However, these species also tended to have few or no predators, a network-position attribute that suggests they might have been particularly vulnerable to new predators. Together, these results suggest that trophic cascades and naivety to predators could have contributed to the megafauna extinction event in Sahul.

Conservation management of wildlife species should be underpinned by knowledge of their distribution and abundance, as well as impacts of human activities on their populations and habitats. Common dolphins (Delphinus delphis) are subject to incidental capture in a range of Australia’s commercial fisheries including gill netting, purse seining and mid-water trawling. The impact these fishery interactions have on common dolphin populations is uncertain, as estimates of abundance are lacking, particularly for the segments of the populations at risk of bycatch and in greater need of protection. Here we used double-observer platform aerial surveys and mark-recapture distance sampling methods to estimate the abundance of common dolphins in 2011 over an area of 42,438 km$^{2}$ in central South Australia, where incidental mortality of common dolphins due to fisheries bycatch is the highest. We also used the potential biological removal (PBR) method to estimate sustainable levels of human-caused mortality for this segment of the population. The estimated abundance of common dolphins was 21,733 (CV = 0.25; 95% CI = 13,809–34,203) in austral summer/autumn and 26,504 in winter/spring (CV = 0.19; 95% CI = 19,488–36,046). Annual PBR estimates, assuming a conservative maximum population growth rate of R$_{max}$ = 0.02 and a recovery factor of F$_{r}$ = 0.5 for species of unknown conservation status, ranged from 189 (summer/autumn) to 239 dolphins (winter/spring), and from 378 (summer/autumn) to 478 dolphins (winter/spring) with an R$_{max}$ = 0.04. Our results indicate that common dolphins are an abundant dolphin species in waters over the central South Australian continental shelf (up to 100 m deep). Based on the 2011 abundance estimates of this species, the highest estimated bycatch of common dolphins (423 mortalities in 2004/05) in the southern Australian region exceeded the precautionary PBR estimates for this population segment. Recent bycatch levels appear to be below PBR es