470 results on '"Peter D, ParÉ"'
Search Results
2. Genome-wide interaction study of gene-by-occupational exposures on respiratory symptoms
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Xiang Zeng, Judith M. Vonk, Diana A. van der Plaat, Alen Faiz, Peter D. Paré, Philippe Joubert, David Nickle, Corry-Anke Brandsma, Hans Kromhout, Roel Vermeulen, Xijin Xu, Xia Huo, Kim de Jong, and H. Marike Boezen more...
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Environmental sciences ,GE1-350 - Abstract
Respiratory symptoms are important indicators of respiratory diseases. Both genetic and environmental factors contribute to respiratory symptoms development but less is known about gene-environment interactions. We aimed to assess interactions between single nucleotide polymorphisms (SNPs) and occupational exposures on respiratory symptoms cough, dyspnea and phlegm. As identification cohort LifeLines I (n = 7976 subjects) was used. Job-specific exposure was estimated using the ALOHA + job exposure matrix. SNP-by-occupational exposure interactions on respiratory symptoms were tested using logistic regression adjusted for gender, age, and current smoking. SNP-by-exposure interactions with a p-value more...
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- 2019
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3. The genetics of smoking in individuals with chronic obstructive pulmonary disease
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Ma’en Obeidat, Guohai Zhou, Xuan Li, Nadia N. Hansel, Nicholas Rafaels, Rasika Mathias, Ingo Ruczinski, Terri H. Beaty, Kathleen C. Barnes, Peter D. Paré, and Don D. Sin
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Cessation ,Smoking ,GWAS ,eCO ,Cotinine ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Smoking is the principal modifiable environmental risk factor for chronic obstructive pulmonary disease (COPD) which affects 300 million people and is the 3rd leading cause of death worldwide. Most of the genetic studies of smoking have relied on self-reported smoking status which is vulnerable to reporting and recall bias. Using data from the Lung Health Study (LHS), we sought to identify genetic variants associated with quantitative smoking and cessation in individuals with mild to moderate COPD. Methods The LHS is a longitudinal multicenter study of mild-to-moderate COPD subjects who were all smokers at recruitment. We performed genome-wide association studies (GWASs) for salivary cotinine (n = 4024), exhaled carbon monoxide (eCO) (n = 2854), cigarettes per day (CPD) (n = 2706) and smoking cessation at year 5 follow-up (n = 717 quitters and 2175 smokers). The GWAS analyses were adjusted for age, gender, and genetic principal components. Results For cotinine levels, SNPs near UGT2B10 gene achieved genome-wide significance (i.e. P more...
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- 2018
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4. Gene expression analysis in asthma using a targeted multiplex array
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Christopher D. Pascoe, Ma’en Obeidat, Bryna A. Arsenault, Yunlong Nie, Stephanie Warner, Dorota Stefanowicz, Samuel J. Wadsworth, Jeremy A. Hirota, S. Jasemine Yang, Delbert R. Dorscheid, Chris Carlsten, Tillie L. Hackett, Chun Y. Seow, and Peter D. Paré more...
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Asthma ,Co-expression ,Nanostring ,Extracellular matrix ,CTCF ,Smooth muscle ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Gene expression changes in the structural cells of the airways are thought to play a role in the development of asthma and airway hyperresponsiveness. This includes changes to smooth muscle contractile machinery and epithelial barrier integrity genes. We used a targeted gene expression arrays to identify changes in the expression and co-expression of genes important in asthma pathology. Methods RNA was isolated from the airways of donor lungs from 12 patients with asthma (8 fatal) and 12 non-asthmatics controls and analyzed using a multiplexed, hypothesis-directed platform to detect differences in gene expression. Genes were grouped according to their role in airway dysfunction: airway smooth muscle contraction, cytoskeleton structure and regulation, epithelial barrier function, innate and adaptive immunity, fibrosis and remodeling, and epigenetics. Results Differential gene expression and gene co-expression analyses were used to identify disease associated changes in the airways of asthmatics. There was significantly decreased abundance of integrin beta 6 and Ras-Related C3 Botulinum Toxin Substrate 1 (RAC1) in the airways of asthmatics, genes which are known to play an important role in barrier function. Significantly elevated levels of Collagen Type 1 Alpha 1 (COL1A1) and COL3A1 which have been shown to modulate cell proliferation and inflammation, were found in asthmatic airways. Additionally, we identified patterns of differentially co-expressed genes related to pathways involved in virus recognition and regulation of interferon production. 7 of 8 pairs of differentially co-expressed genes were found to contain CCCTC-binding factor (CTCF) motifs in their upstream promoters. Conclusions Changes in the abundance of genes involved in cell-cell and cell-matrix interactions could play an important role in regulating inflammation and remodeling in asthma. Additionally, our results suggest that alterations to the binding site of the transcriptional regulator CTCF could drive changes in gene expression in asthmatic airways. Several asthma susceptibility loci are known to contain CTCF motifs and so understanding the role of this transcription factor may expand our understanding of asthma pathophysiology and therapeutic options. more...
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- 2017
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5. Responsiveness to Ipratropium Bromide in Male and Female Patients with Mild to Moderate Chronic Obstructive Pulmonary Disease
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Xuan Li, Ma'en Obeidat, Guohai Zhou, Janice M. Leung, Donald Tashkin, Robert Wise, John Connett, Philippe Joubert, Yohan Bossé, Maarten van den Berge, Corry-Anke Brandsma, David C. Nickle, Ke Hao, Peter D. Paré, and Don D. Sin more...
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Sex ,FEV1 ,Ipratropium ,COPD ,Gene expression ,Lung ,Medicine ,Medicine (General) ,R5-920 - Abstract
Introduction: Although the prevalence of chronic obstructive pulmonary disease (COPD) is similar between men and women, current evidence used to support bronchodilator therapy has been generated in therapeutic trials that have predominately enrolled male patients. Here, we determined whether there is any significant sex-related differences in FEV1 responses to ipratropium bromide. Methods: Data from the Lung Health Study (n = 5887; 37% females) were used to determine changes in FEV1 with ipratropium or placebo in male and female subjects with mild to moderate COPD over 5 years. Lung Expression Quantitative Trait Loci (eQTL) dataset was used to determine whether there were any sex-related differences in gene expression for muscarinic (M2 and M3) receptors in lungs of male and female patients. Results: After 4 months, ipratropium therapy increased FEV1 by 6.0% in female and 2.9% in male subjects from baseline values (p = 2.42 × 10−16). This effect was modified by body mass index (BMI) such that the biggest improvements in FEV1 with ipratropium were observed in thin female subjects (p for BMI ∗ sex interaction = 0.044). The sex-related changes in FEV1 related to ipratropium persisted for 2 years (p = 0.0134). Female compared with male lungs had greater gene expression for M3 relative to M2 receptors (p = 6.86 × 10−8). Conclusion: Ipratropium induces a larger bronchodilator response in female than in male patients and the benefits are particularly notable in non-obese females. Female lungs have greater gene expression for the M3 muscarinic receptor relative to M2 receptors than male lungs. Female patients are thus more likely to benefit from ipratropium than male COPD patients. more...
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- 2017
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6. Network-based analysis reveals novel gene signatures in peripheral blood of patients with chronic obstructive pulmonary disease
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Ma’en Obeidat, Yunlong Nie, Virginia Chen, Casey P. Shannon, Anand Kumar Andiappan, Bernett Lee, Olaf Rotzschke, Peter J. Castaldi, Craig P. Hersh, Nick Fishbane, Raymond T. Ng, Bruce McManus, Bruce E. Miller, Stephen Rennard, Peter D. Paré, and Don D. Sin more...
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COPD ,FEV1 ,Blood ,mRNA ,Gene expression ,Co-expression ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Chronic obstructive pulmonary disease (COPD) is currently the third leading cause of death and there is a huge unmet clinical need to identify disease biomarkers in peripheral blood. Compared to gene level differential expression approaches to identify gene signatures, network analyses provide a biologically intuitive approach which leverages the co-expression patterns in the transcriptome to identify modules of co-expressed genes. Methods A weighted gene co-expression network analysis (WGCNA) was applied to peripheral blood transcriptome from 238 COPD subjects to discover co-expressed gene modules. We then determined the relationship between these modules and forced expiratory volume in 1 s (FEV1). In a second, independent cohort of 381 subjects, we determined the preservation of these modules and their relationship with FEV1. For those modules that were significantly related to FEV1, we determined the biological processes as well as the blood cell-specific gene expression that were over-represented using additional external datasets. Results Using WGCNA, we identified 17 modules of co-expressed genes in the discovery cohort. Three of these modules were significantly correlated with FEV1 (FDR more...
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- 2017
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7. Airway and parenchymal tissue resistance and elastance in ex vivo sheep lungs: effects of bronchochallenge and deep inspiration
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Shou-Jin Dong, Lu Wang, Pasquale Chitano, Dragoş Mihai Vasilescu, Peter D. Paré, and Chun Y. Seow
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Pulmonary and Respiratory Medicine ,Sheep ,Inhalation ,Physiology ,Airway Resistance ,Physiology (medical) ,Animals ,Cell Biology ,Lung ,Parenchymal Tissue ,Respiratory Function Tests - Abstract
Lung resistance ( RL) is determined by airway and parenchymal tissue resistance, as well as the degree of heterogeneity in airway constriction. Deep inspirations (DIs) are known to reverse experimentally induced increase in RL, but the mechanism is not entirely clear. The first step toward understanding the effect of DI is to determine how each of the resistance components is affected by DI. In the present study, we measured RL and apparent airway resistance ( RAW, which combines the effects of airway resistance and airway heterogeneity) simultaneously before and after a DI in acetylcholine (ACh)-challenged ex vivo sheep lungs. We found that at normal breathing frequency (0.25 Hz) ACh-challenge led to a doubling of RL, 80.3% of that increase was caused by an increase in RAW; the increase in apparent tissue resistance ( RT) was insignificant. 57.7% of the increase in RAW was abolished by a single DI. After subtracting RAW from RL, the remaining RT was mostly independent of ACh-challenge and its reduction after a DI came mostly from the change in the mechanical properties of lung parenchyma. We conclude that at normal breathing frequency, RL in an unchallenged lung is mostly composed of RT, and the increase in RL due to ACh-challenge stems mostly from the increase in RAW and that both RAW and RT can be greatly reduced by a DI, likely due to a reduction in true airway resistance and heterogeneity, as well as parenchymal tissue hysteresis post DI. more...
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- 2022
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8. Lung resistance and elastance are different in ex vivo sheep lungs ventilated by positive and negative pressures
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Shou-Jin Dong, Lu Wang, Pasquale Chitano, Harvey O. Coxson, Dragoş M. Vasilescu, Peter D. Paré, and Chun Y. Seow
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Positive-Pressure Respiration ,Pulmonary and Respiratory Medicine ,Sheep ,Physiology ,Airway Resistance ,Physiology (medical) ,Respiratory Mechanics ,Respiratory Physiological Phenomena ,Animals ,Cell Biology ,respiratory system ,Lung ,Respiratory Function Tests - Abstract
Lung resistance ( RL) and elastance ( EL) can be measured during positive or negative pressure ventilation. Whether the different modes of ventilation produce different RL and EL is still being debated. Although negative pressure ventilation (NPV) is more physiological, positive pressure ventilation (PPV) is more commonly used for treating respiratory failure. In the present study, we measured lung volume, airway diameter, and airway volume, as well as RL and EL with PPV and NPV in explanted sheep lungs. We found that lung volume under a static pressure, either positive or negative, was not different. However, RL and EL were significantly higher in NPV at high inflation pressures. Interestingly, diameters of smaller airways (diameters L is higher in NPV (vs. PPV), because the peripheral parenchyma is a major source of tissue resistance, which is a part of the RL that increases with pressure. This explanation is consistent with the finding that during high frequency ventilation (>1 Hz, where RL reflects airway resistance more than tissue resistance), the difference in RL between NPV and PPV disappeared. more...
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- 2022
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9. Supplementary Table 1 from Molecular Signature of Smoking in Human Lung Tissues
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Michel Laviolette, Peter D. Paré, Wim Timens, Andrew J. Sandford, James C. Hogg, Gregory J. Opiteck, Jeffrey A. Tsou, Vladislav Malkov, Catherine Tribouley, Corry A. Brandsma, Maarten van den Berge, Mark Elliott, Vivien Wong, Philippe Joubert, Nathalie Gaudreault, Christian Couture, Maxime Lamontagne, Don D. Sin, Dirkje S. Postma, and Yohan Bossé more...
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PDF file - 589K, Probe sets significantly associated with smoking in the discovery set
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- 2023
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10. Supplementary Methods, Tables 2-3, Figures 1-6 from Molecular Signature of Smoking in Human Lung Tissues
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Michel Laviolette, Peter D. Paré, Wim Timens, Andrew J. Sandford, James C. Hogg, Gregory J. Opiteck, Jeffrey A. Tsou, Vladislav Malkov, Catherine Tribouley, Corry A. Brandsma, Maarten van den Berge, Mark Elliott, Vivien Wong, Philippe Joubert, Nathalie Gaudreault, Christian Couture, Maxime Lamontagne, Don D. Sin, Dirkje S. Postma, and Yohan Bossé more...
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PDF file - 242K, Table S2. Clinical characteristics of patients in the first replication set (UBC). Table S3. Clinical characteristics of patients in the second replication set (Groningen). Figure S1. Volcano plots showing the impact of smoking, COPD, and lung cancer on gene expression in the lung. Figure S2. Comparison of gene expression recovery following smoking cessation between the discovery set (Laval) and UBC. Figure S3. Comparison of gene expression recovery following smoking cessation between the discovery set (Laval) and Groningen. Figure S4. Expression of SERPIND1 in lung parenchyma of smoker and never-smoker by immunochemistry. Figure S5. Enrichment plot for slowly reversible gene in UBC. Figure S6. Enrichment plot for slowly reversible gene in Groningen more...
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- 2023
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11. The actin regulator zyxin reinforces airway smooth muscle and accumulates in airways of fatal asthmatics.
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Sonia R Rosner, Christopher D Pascoe, Elizabeth Blankman, Christopher C Jensen, Ramaswamy Krishnan, Alan L James, John G Elliot, Francis H Green, Jeffrey C Liu, Chun Y Seow, Jin-Ah Park, Mary C Beckerle, Peter D Paré, Jeffrey J Fredberg, and Mark A Smith more...
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Medicine ,Science - Abstract
Bronchospasm induced in non-asthmatic human subjects can be easily reversed by a deep inspiration (DI) whereas bronchospasm that occurs spontaneously in asthmatic subjects cannot. This physiological effect of a DI has been attributed to the manner in which a DI causes airway smooth muscle (ASM) cells to stretch, but underlying molecular mechanisms-and their failure in asthma-remain obscure. Using cells and tissues from wild type and zyxin-/- mice we report responses to a transient stretch of physiologic magnitude and duration. At the level of the cytoskeleton, zyxin facilitated repair at sites of stress fiber fragmentation. At the level of the isolated ASM cell, zyxin facilitated recovery of contractile force. Finally, at the level of the small airway embedded with a precision cut lung slice, zyxin slowed airway dilation. Thus, at each level zyxin stabilized ASM structure and contractile properties at current muscle length. Furthermore, when we examined tissue samples from humans who died as the result of an asthma attack, we found increased accumulation of zyxin compared with non-asthmatics and asthmatics who died of other causes. Together, these data suggest a biophysical role for zyxin in fatal asthma. more...
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- 2017
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12. Canadian lung tissue biobank with associated clinical data supporting respiratory research for four decades
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Steven Booth, Chen Xi Yang, Harvey O. Coxson, D. P. Sutherland, James C. Hogg, Tillie-Louise Hackett, Dragoş M. Vasilescu, Emmanuel T. Osei, W. M. Elliot, N. E. Coxson, and Peter D. Paré
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Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Lung ,business.industry ,Micro computed tomography ,Respiratory disease ,respiratory system ,Critical Care and Intensive Care Medicine ,medicine.disease ,Biobank ,respiratory tract diseases ,Human lung ,medicine.anatomical_structure ,medicine ,Respiratory system ,Lung tissue ,business - Abstract
RATIONALE: The James Hogg Lung Registry (JHLR) was established in 1977 to enable respiratory disease research through the biobanking of human lung tissues. The objective of this report is to provid... more...
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- 2021
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13. Ratio of Maximal Inspiratory to Expiratory Flow Aids in the Separation of COPD from Asthma
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Yuki Mieno, Hiroshi Takahashi, Kazuyoshi Imaizumi, Mitsushi Okazawa, and Peter D. Paré
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Pulmonary and Respiratory Medicine ,Spirometry ,COPD ,medicine.medical_specialty ,Vital capacity ,medicine.diagnostic_test ,business.industry ,medicine.disease ,Logistic regression ,respiratory tract diseases ,Pulmonary function testing ,03 medical and health sciences ,FEV1/FVC ratio ,0302 clinical medicine ,030228 respiratory system ,Wheeze ,Internal medicine ,medicine ,Cardiology ,030212 general & internal medicine ,medicine.symptom ,business ,Asthma - Abstract
Patients who have chronic obstructive pulmonary disease (COPD) and bronchial asthma (BA) share symptoms such as, dyspnoea, cough and wheeze. Differentiating these diseases in the ambulatory setting can be challenging especially in older adult smokers who are being treated with a variety of medications. The objective of this study was to test the value of adding a maximal inspiratory manoeuvre to basic spirometry to differentiate COPD and BA. One hundred forty-three COPD patients and 142 BA patients had measurements of maximal inspiratory and expiratory flow during routine spirometry. Parameters from these tests were used to assess diagnostic accuracy using receiver-operating characteristic (ROC) analyses followed by logistic regression. The association of two independent parameters were analyzed using linear regression analyses. Results show that forced expiratory volume in one second/forced vital capacity (FEV1/FVC%) 3.06 significantly predicted COPD. Post-test probability for prediction of COPD was 82.0% when patients had both parameters. When asthmatic patients with a smoking history were compared with COPD patients, FEV1/FVC% 3.29 were both independent predictors of COPD. The post-test probability for COPD was 94.4% when patients had both parameters. The association between FEV1/FVC% and PIF/MEF50 was significantly different between COPD and BA. In conclusion, the addition of the maximal inspiratory effort to routine pulmonary function measurements provides a simple test to help differentiate COPD and BA. more...
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- 2020
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14. Increased Epicardial Adipose Tissue Is Associated with the Airway Dominant Phenotype of Chronic Obstructive Pulmonary Disease.
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Yuichi Higami, Emiko Ogawa, Yasushi Ryujin, Kenichi Goto, Ruriko Seto, Hiroshi Wada, Nguyen Van Tho, Le Thi Tuyet Lan, Peter D Paré, and Yasutaka Nakano
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Medicine ,Science - Abstract
Epicardial adipose tissue (EAT) has been shown to be a non-invasive marker that predicts the progression of cardiovascular disease (CVD). It has been reported that the EAT volume is increased in patients with chronic obstructive pulmonary disease (COPD). However, little is known about which phenotypes of COPD are associated with increased EAT.One hundred and eighty smokers who were referred to the clinic were consecutively enrolled. A chest CT was used for the quantification of the emphysematous lesions, airway lesions, and EAT. These lesions were assessed as the percentage of low attenuation volume (LAV%), the square root of airway wall area of a hypothetical airway with an internal perimeter of 10 mm (√Aaw at Pi10) and the EAT area, respectively. The same measurements were made on 225 Vietnamese COPD patients to replicate the results.Twenty-six of the referred patients did not have COPD, while 105 were diagnosed as having COPD based on a FEV1/FVC more...
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- 2016
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15. Human Lung Tissue Transcriptome: Influence of Sex and Age.
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Matteo Dugo, Chiara E Cotroneo, Emilie Lavoie-Charland, Matteo Incarbone, Luigi Santambrogio, Lorenzo Rosso, Maarten van den Berge, David Nickle, Peter D Paré, Yohan Bossé, Tommaso A Dragani, and Francesca Colombo more...
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Medicine ,Science - Abstract
Sex and age strongly influence the pathophysiology of human lungs, but scarce information is available about their effects on pulmonary gene expression.We followed a discovery-validation strategy to identify sex- and age-related transcriptional differences in lung.We identified transcriptional profiles significantly associated with sex (215 genes; FDR < 0.05) and age at surgery (217 genes) in non-involved lung tissue resected from 284 lung adenocarcinoma patients. When these profiles were tested in three independent series of non-tumor lung tissue from an additional 1,111 patients, we validated the association with sex and age for 25 and 22 genes, respectively. Among the 17 sex-biased genes mapping on chromosome X, 16 have been reported to escape X-chromosome inactivation in other tissues or cells, suggesting that this mechanism influences lung transcription too. Our 22 age-related genes partially overlap with genes modulated by age in other tissues, suggesting that the aging process has similar consequences on gene expression in different organs. Finally, seven genes whose expression was modulated by sex in non-tumor lung tissue, but no age-related gene, were also validated using publicly available data from 990 lung adenocarcinoma samples, suggesting that the physiological regulatory mechanisms are only partially active in neoplastic tissue.Gene expression in non-tumor lung tissue is modulated by both sex and age. These findings represent a validated starting point for research on the molecular mechanisms underlying the observed differences in the course of lung diseases among men and women of different ages. more...
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- 2016
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16. Identification of Susceptibility Genes of Adult Asthma in French Canadian Women
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Jean-Christophe Bérubé, Nathalie Gaudreault, Emilie Lavoie-Charland, Laura Sbarra, Cyndi Henry, Anne-Marie Madore, Peter D. Paré, Maarten van den Berge, David Nickle, Michel Laviolette, Catherine Laprise, Louis-Philippe Boulet, and Yohan Bossé more...
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Diseases of the respiratory system ,RC705-779 - Abstract
Susceptibility genes of asthma may be more successfully identified by studying subgroups of phenotypically similar asthma patients. This study aims to identify single nucleotide polymorphisms (SNPs) associated with asthma in French Canadian adult women. A pooling-based genome-wide association study was performed in 240 allergic asthmatic and 120 allergic nonasthmatic women. The top associated SNPs were selected for individual genotyping in an extended cohort of 349 asthmatic and 261 nonasthmatic women. The functional impact of asthma-associated SNPs was investigated in a lung expression quantitative trait loci (eQTL) mapping study (n=1035). Twenty-one of the 38 SNPs tested by individual genotyping showed P values lower than 0.05 for association with asthma. Cis-eQTL analyses supported the functional contribution of rs17801353 associated with C3AR1 (P=7.90E-10). The asthma risk allele for rs17801353 is associated with higher mRNA expression levels of C3AR1 in lung tissue. In silico functional characterization of the asthma-associated SNPs also supported the contribution of C3AR1 and additional genes including SYNE1, LINGO2, and IFNG-AS1. This pooling-based GWAS in French Canadian adult women followed by lung eQTL mapping suggested C3AR1 as a functional locus associated with asthma. Additional susceptibility genes were suggested in this homogenous subgroup of asthma patients. more...
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- 2016
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17. Specific genotyping of human leukocyte antigen-A*01 by polymerase chain reaction using allele group-specific primers
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Ikuma Kasuga, Peter D. Paré, and Andrew J. Sandford
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HLA-A1 ,PCR ,allele group-specific primers ,Genetics ,QH426-470 - Abstract
We established a specific genotyping assay for HLA-A*01, which is one of the most frequently found HLA-A alleles in the Caucasian population. This assay uses the polymerase chain reaction (PCR) with allele group-specific primers (ASP). HLA-A*01 group-specific primers were designed for exon 3 of the HLA-A gene, based on the recent HLA-sequence alignment. Both sense and anti-sense primers were designed with completely matched sequences to each specific HLA-A*01 allele, but mismatched by at least 1 nucleotide to all other known class I HLA alleles. By the use of these primers and stringent PCR conditions, we successfully genotyped the HLA-A*01 group alleles and achieved greater accuracy than previous methods. more...
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- 2006
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18. Genetic Testing for Respiratory Disease: Are We There Yet?
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Peter D Paré
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Diseases of the respiratory system ,RC705-779 - Abstract
The human genome project promised a revolution in health care – the development of ‘personalized medicine’, where knowledge of an individual’s genetic code enables the prediction of risk for specific diseases and the potential to alter that risk based on preventive measures and lifestyle modification. The present brief review provides a report card on the progress toward that goal with respect to respiratory disease. Should generalized population screening for genetic risk factors for respiratory disease be instituted? Or not? more...
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- 2012
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19. The Effect of Statins on Blood Gene Expression in COPD.
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Ma'en Obeidat, Nick Fishbane, Yunlong Nie, Virginia Chen, Zsuzsanna Hollander, Scott J Tebbutt, Yohan Bossé, Raymond T Ng, Bruce E Miller, Bruce McManus, Stephen Rennard, Peter D Paré, and Don D Sin
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Medicine ,Science - Abstract
BackgroundCOPD is currently the fourth leading cause of death worldwide. Statins are lipid lowering agents with documented cardiovascular benefits. Observational studies have shown that statins may have a beneficial role in COPD. The impact of statins on blood gene expression from COPD patients is largely unknown.ObjectiveIdentify blood gene signature associated with statin use in COPD patients, and the pathways underpinning this signature that could explain any potential benefits in COPD.MethodsWhole blood gene expression was measured on 168 statin users and 451 non-users from the ECLIPSE study using the Affymetrix Human Gene 1.1 ST microarray chips. Factor Analysis for Robust Microarray Summarization (FARMS) was used to process the expression data. Differential gene expression analysis was undertaken using the Linear Models for Microarray data (Limma) package adjusting for propensity score and surrogate variables. Similarity of the expression signal with published gene expression profiles was performed in ProfileChaser.Results25 genes were differentially expressed between statin users and non-users at an FDR of 10%, including LDLR, CXCR2, SC4MOL, FAM108A1, IFI35, FRYL, ABCG1, MYLIP, and DHCR24. The 25 genes were significantly enriched in cholesterol homeostasis and metabolism pathways. The resulting gene signature showed correlation with Huntington's disease, Parkinson's disease and acute myeloid leukemia gene signatures.ConclusionThe blood gene signature of statins' use in COPD patients was enriched in cholesterol homeostasis pathways. Further studies are needed to delineate the role of these pathways in lung biology. more...
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- 2015
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20. Impact of Statins on Gene Expression in Human Lung Tissues.
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Jérôme Lane, Stephan F van Eeden, Ma'en Obeidat, Don D Sin, Scott J Tebbutt, Wim Timens, Dirkje S Postma, Michel Laviolette, Peter D Paré, and Yohan Bossé
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Medicine ,Science - Abstract
Statins are 3-hydroxy-3-methylglutaryl-coenzyme A reductase inhibitors that alter the synthesis of cholesterol. Some studies have shown a significant association of statins with improved respiratory health outcomes of patients with asthma, chronic obstructive pulmonary disease and lung cancer. Here we hypothesize that statins impact gene expression in human lungs and may reveal the pleiotropic effects of statins that are taking place directly in lung tissues. Human lung tissues were obtained from patients who underwent lung resection or transplantation. Gene expression was measured on a custom Affymetrix array in a discovery cohort (n = 408) and two replication sets (n = 341 and 282). Gene expression was evaluated by linear regression between statin users and non-users, adjusting for age, gender, smoking status, and other covariables. The results of each cohort were combined in a meta-analysis and biological pathways were studied using Gene Set Enrichment Analysis. The discovery set included 141 statin users. The lung mRNA expression levels of eighteen and three genes were up-regulated and down-regulated in statin users (FDR < 0.05), respectively. Twelve of the up-regulated genes were replicated in the first replication set, but none in the second (p-value < 0.05). Combining the discovery and replication sets into a meta-analysis improved the significance of the 12 up-regulated genes, which includes genes encoding enzymes and membrane proteins involved in cholesterol biosynthesis. Canonical biological pathways altered by statins in the lung include cholesterol, steroid, and terpenoid backbone biosynthesis. No genes encoding inflammatory, proteases, pro-fibrotic or growth factors were altered by statins, suggesting that the direct effect of statin in the lung do not go beyond its antilipidemic action. Although more studies are needed with specific lung cell types and different classes and doses of statins, the improved health outcomes and survival observed in statin users with chronic lung diseases do not seem to be mediated through direct regulation of gene expression in the lung. more...
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- 2015
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21. Vitronectin expression in the airways of subjects with asthma and chronic obstructive pulmonary disease.
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Lina M Salazar-Peláez, Thomas Abraham, Ana M Herrera, Mario A Correa, Jorge E Ortega, Peter D Paré, and Chun Y Seow
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Medicine ,Science - Abstract
Vitronectin, a multifunctional glycoprotein, is involved in coagulation, inhibition of the formation of the membrane attack complex (MAC), cell adhesion and migration, wound healing, and tissue remodeling. The primary cellular source of vitronectin is hepatocytes; it is not known whether resident cells of airways produce vitronectin, even though the glycoprotein has been found in exhaled breath condensate and bronchoalveolar lavage from healthy subjects and patients with interstitial lung disease. It is also not known whether vitronectin expression is altered in subjects with asthma and COPD. In this study, bronchial tissue from 7 asthmatic, 10 COPD and 14 control subjects was obtained at autopsy and analyzed by immunohistochemistry to determine the percent area of submucosal glands occupied by vitronectin. In a separate set of experiments, quantitative colocalization analysis was performed on tracheobronchial tissue sections obtained from donor lungs (6 asthmatics, 4 COPD and 7 controls). Vitronectin RNA and protein expressions in bronchial surface epithelium were examined in 12 subjects who undertook diagnostic bronchoscopy. Vitronectin was found in the tracheobronchial epithelium from asthmatic, COPD, and control subjects, although its expression was significantly lower in the asthmatic group. Colocalization analysis of 3D confocal images indicates that vitronectin is expressed in the glandular serous epithelial cells and in respiratory surface epithelial cells other than goblet cells. Expression of the 65-kDa vitronectin isoform was lower in bronchial surface epithelium from the diseased subjects. The cause for the decreased vitronectin expression in asthma is not clear, however, the reduced concentration of vitronectin in the epithelial/submucosal layer of airways may be linked to airway remodeling. more...
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- 2015
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22. The Huxley crossbridge model as the basic mechanism for airway smooth muscle contraction
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Peter D. Paré, Pasquale Chitano, Lu Wang, Chun Y. Seow, and Ling Luo
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0301 basic medicine ,Pulmonary and Respiratory Medicine ,Myosin Light Chains ,Contraction (grammar) ,Myosin light-chain kinase ,Physiology ,Respiratory System ,macromolecular substances ,Muscle, Smooth, Vascular ,03 medical and health sciences ,0302 clinical medicine ,CrossBridge ,Physiology (medical) ,Myosin ,Animals ,Phosphorylation ,Muscle, Skeletal ,Actin ,Sheep ,Chemistry ,Cell Biology ,Airway smooth muscle ,Smooth muscle contraction ,Actin Cytoskeleton ,030104 developmental biology ,Biophysics ,030217 neurology & neurosurgery ,Research Article ,Muscle Contraction - Abstract
The cyclic interaction between myosin crossbridges and actin filaments underlies smooth muscle contraction. Phosphorylation of the 20-kDa myosin light chain (MLC20) is a crucial step in activating the crossbridge cycle. Our current understanding of smooth muscle contraction is based on observed correlations among MLC20 phosphorylation, maximal shortening velocity ( Vmax), and isometric force over the time course of contraction. However, during contraction there are changes in the extent of phosphorylation of many additional proteins as well as changes in activation of enzymes associated with the signaling pathways. As a consequence, the mechanical manifestation of muscle contraction is likely to change with time. To simplify the study of these relationships, we measured the mechanical properties of airway smooth muscle at different levels of MLC20 phosphorylation at a fixed time during contraction. A simple correlation emerged when time-dependent variables were fixed. MLC20 phosphorylation was found to be directly and linearly correlated with the active stress, stiffness, and power of the muscle; the observed weak dependence of Vmax on MLC20 phosphorylation could be explained by the presence of an internal load in the muscle preparation. These results can be entirely explained by the Huxley crossbridge model. We conclude that when the influence of time-dependent events during contraction is held constant, the basic crossbridge mechanism in smooth muscle is the same as that in striated muscle. more...
- Published
- 2019
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23. Prenatal depression and birth mode sequentially mediate maternal education's influence on infant sleep duration
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Tobias R. Kollmann, Jeremy A. Scott, Teresa To, M.B. Azad, Theo J. Moraes, Michael Brauer, Piush J. Mandhane, Thomas Eiwegger, Allan B. Becker, Andrew J. Sandford, A. D. Befus, Frances Silverman, Catherine Laprise, Edith Chen, Richard G. Hegele, Scott J. Tebbutt, Padmaja Subbarao, W.Y.W. Lou, Anita L. Kozyrskyj, Felix Ratjen, Peter D. Paré, A.B. Becker, J.R. Brook, D. L. Holness, Meghan B. Azad, P. J. Mandhane, Joseph Macri, Sharon D. Dell, T.J. Moraes, Clare D. Ramsey, Malcolm R. Sears, M.R. Sears, Q. L. Duan, Wendy Y. W. Lou, Stuart E. Turvey, Brittany A. Matenchuk, Sukhpreet K Tamana, P. Subbarao, Sonia S. Anand, A.L. Kozyrskyj, Michael M Cyr, S.E. Turvey, Hartmut Grasemann, James A. Scott, Timothy K. Takaro, Perry Hystad, Gregory E. Miller, Kent T. HayGlass, Judah A. Denburg, Denise Daley, Elinor Simons, Diana L. Lefebvre, and Michael S. Kobor more...
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Mothers ,Affect (psychology) ,Cohort Studies ,Depression, Postpartum ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Pregnancy ,medicine ,Humans ,Antibiotic prophylaxis ,Depression (differential diagnoses) ,Cesarean Section ,Depression ,Obstetrics ,business.industry ,Infant ,General Medicine ,Center for Epidemiologic Studies Depression Scale ,Maternal education ,030228 respiratory system ,Duration (music) ,Infant Behavior ,Cohort ,Female ,Observational study ,Sleep ,business ,030217 neurology & neurosurgery - Abstract
Rationale Sleep duration is critical to growth, learning, and immune function development in infancy. Strategies to ensure that national recommendations for sleep duration in infants are met require knowledge of perinatal factors that affect infant sleep. Objectives To investigate the mechanistic pathways linking maternal education and infant sleep. Methods An observational study was conducted on 619 infants whose mothers were enrolled at the Edmonton site of the CHILD birth cohort. Infant sleep duration at three months was assessed using the Brief Infant Sleep Questionnaire. Maternal education was collected via maternal report. Prenatal and postnatal depression scores were obtained from the 20-item Center for Epidemiologic Studies Depression Scale (CES-D). Birth records and maternal report were the source of covariate measures. Mediation analysis (PROCESS v3.0) was used to examine the indirect effects of maternal education on infant sleep duration mediated through prenatal depression and birth mode. Measurements and main results At three months of age, infants slept on average 14.1 h. Lower maternal education and prenatal depression were associated with significantly shorter infant sleep duration. Emergency cesarean section birth was associated with 1-hour shorter sleep duration at three months compared to vaginal birth [without intrapartum antibiotic prophylaxis] (β: −0.99 h; 95% CI: −1.51, −0.48). Thirty percent of the effect of lower maternal education on infant total sleep duration was mediated sequentially through prenatal depression and birth mode (Total Indirect Effects: −0.12, 95% CI: −0.22, −0.03, p Conclusions Prenatal depression and birth mode sequentially mediate the effect of maternal education on infant sleep duration. more...
- Published
- 2019
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24. Small Airway Reduction and Fibrosis Is an Early Pathologic Feature of Idiopathic Pulmonary Fibrosis
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Cameron J. Hague, Kohei Ikezoe, Darra T. Murphy, Christopher J. Ryerson, Joel D. Cooper, Samuel Peterson, James C. Hogg, Naoya Tanabe, Peter D. Paré, Tillie-Louise Hackett, Dante Prins, Fanny Chu, Feng Xu, Stacey LeDoux, Harvey O. Coxson, Thomas V. Colby, and Dragoş M. Vasilescu more...
- Subjects
Pulmonary and Respiratory Medicine ,Male ,Pathology ,medicine.medical_specialty ,Disease outcome ,Critical Care and Intensive Care Medicine ,Idiopathic pulmonary fibrosis ,Fibrosis ,medicine ,Humans ,Bronchioles ,Aged ,business.industry ,fungi ,food and beverages ,X-Ray Microtomography ,respiratory system ,Middle Aged ,medicine.disease ,Pathophysiology ,Idiopathic Pulmonary Fibrosis ,respiratory tract diseases ,Terminal Bronchioles ,Early Diagnosis ,Female ,Airway ,business - Abstract
Rationale: To improve disease outcomes in idiopathic pulmonary fibrosis (IPF), it is essential to understand its early pathophysiology so that it can be targeted therapeutically. Objectives: Perfor... more...
- Published
- 2021
25. Airway diameter at different transpulmonary pressures in ex vivo sheep lungs: implications for deep inspiration-induced bronchodilation and bronchoprotection
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Lu Wang, Peter D. Paré, Chun Y. Seow, Pasquale Chitano, Shou-Jin Dong, and Harvey O. Coxson
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Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Physiology ,First line ,Bronchoconstriction ,Bronchi ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,Airway resistance ,Physiology (medical) ,Internal medicine ,Bronchodilation ,medicine ,Animals ,Lung ,Asthma ,Sheep ,business.industry ,Airway Resistance ,Healthy subjects ,Muscle, Smooth ,Cell Biology ,respiratory system ,medicine.disease ,respiratory tract diseases ,Respiratory Function Tests ,030228 respiratory system ,Inhalation ,Cardiology ,medicine.symptom ,business ,Airway ,Lung Volume Measurements ,Tomography, X-Ray Computed ,Ex vivo - Abstract
Deep inspiration (DI)-induced bronchodilation is the first line of defense against bronchoconstriction in healthy subjects. A hallmark of asthma is the lack of this beneficial effect of DI. The mechanism underlying the bronchodilatory effect of DI is not clear. Understanding the mechanism will help us unravel the mystery of asthma pathophysiology. It has been postulated that straining airway smooth muscle (ASM) during a DI could lead to bronchodilation and bronchoprotection. The hypothesis is currently under debate, and a central question is whether ASM is sufficiently stretched during a DI for its contractility to be compromised. Besides bronchoconstriction, another contributor to lung resistance is airway heterogeneity. The present study examines changes in airway diameter and heterogeneity at different lung volumes. Freshly explanted sheep lungs were used in plethysmographic measurements of lung resistance and elastance at different lung volumes, whereas the airway dimensions were measured by computed tomography (CT). The change in airway diameter informed by CT measurements was applied to isolated airway ring preparations to determine the strain-induced loss of ASM contractility. We found that changing the transpulmonary pressure from 5 to 30 cmH2O led to a 51% increase in lung volume, accompanied by a 46% increase in the airway diameter with no change in airway heterogeneity. When comparable airway strains measured in the whole lung were applied to isolated airway rings in either relaxed or contracted state, a significant loss of ASM contractility was observed, suggesting that DI-induced bronchodilation and bronchoprotection can result from strain-induced loss of ASM contractility. more...
- Published
- 2021
26. Physiological Changes at Altitude in Nonasthmatic and Asthmatic Subjects
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Dianna Louie and Peter D Paré
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Diseases of the respiratory system ,RC705-779 - Abstract
Exercised-induced asthma is not due to exercise itself per se, but rather is due to cooling and/or drying of the airway because of the increased ventilation that accompanies exercise. Travel to high altitudes is accompanied by increased ventilation of cool, often dry, air, irrespective of the level of exertion, and by itself, this could represent an 'exercise' challenge for asthmatic subjects. Exercise-induced bronchoconstriction was measured at sea level and at various altitudes during a two-week trek through the Himalayas in a group of nonasthmatic and asthmatic subjects. The results of this study showed that in mild asthmatics, there was a significant reduction in peak expiratory flow at very high altitudes. Contrary to the authors' hypothesis, there was not a significant additional decrease in peak expiratory flow after exercise in the asthmatic subjects at high altitude. However, there was a significant fall in arterial oxygen saturation postexercise in the asthmatic subjects, a change that was not seen in the nonasthmatic subjects. These data suggest that asthmatic subjects develop bronchoconstriction when they go to very high altitudes, possibly via the same mechanism that causes exercise-induced asthma. more...
- Published
- 2004
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27. Refining susceptibility loci of chronic obstructive pulmonary disease with lung eqtls.
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Maxime Lamontagne, Christian Couture, Dirkje S Postma, Wim Timens, Don D Sin, Peter D Paré, James C Hogg, David Nickle, Michel Laviolette, and Yohan Bossé
- Subjects
Medicine ,Science - Abstract
Chronic obstructive pulmonary disease (COPD) is the fourth leading cause of mortality worldwide. Recent genome-wide association studies (GWAS) have identified robust susceptibility loci associated with COPD. However, the mechanisms mediating the risk conferred by these loci remain to be found. The goal of this study was to identify causal genes/variants within susceptibility loci associated with COPD. In the discovery cohort, genome-wide gene expression profiles of 500 non-tumor lung specimens were obtained from patients undergoing lung surgery. Blood-DNA from the same patients were genotyped for 1,2 million SNPs. Following genotyping and gene expression quality control filters, 409 samples were analyzed. Lung expression quantitative trait loci (eQTLs) were identified and overlaid onto three COPD susceptibility loci derived from GWAS; 4q31 (HHIP), 4q22 (FAM13A), and 19q13 (RAB4B, EGLN2, MIA, CYP2A6). Significant eQTLs were replicated in two independent datasets (n = 363 and 339). SNPs previously associated with COPD and lung function on 4q31 (rs1828591, rs13118928) were associated with the mRNA expression of HHIP. An association between mRNA expression level of FAM13A and SNP rs2045517 was detected at 4q22, but did not reach statistical significance. At 19q13, significant eQTLs were detected with EGLN2. In summary, this study supports HHIP, FAM13A, and EGLN2 as the most likely causal COPD genes on 4q31, 4q22, and 19q13, respectively. Strong lung eQTL SNPs identified in this study will need to be tested for association with COPD in case-control studies. Further functional studies will also be needed to understand the role of genes regulated by disease-related variants in COPD. more...
- Published
- 2013
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28. Mechanopharmacology and Synergistic Relaxation of Airway Smooth Muscle
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Lu Wang, Pasquale Chitano, Peter D. Paré, and Chun Y. Seow
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0301 basic medicine ,Contraction (grammar) ,Chemistry ,Airway smooth muscle ,respiratory system ,musculoskeletal system ,Research Papers ,respiratory tract diseases ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Intracellular signaling pathways ,Salbutamol ,medicine ,Biophysics ,Relaxation (physics) ,Cytoskeleton ,Rho-associated protein kinase ,030217 neurology & neurosurgery ,Acetylcholine ,medicine.drug - Abstract
Asthmatic airways are stiffer than normal. We have shown that the cytoskeletal passive stiffness of airway smooth muscle (ASM) can be regulated by intracellular signaling pathways, especially those associated with Rho kinase (ROCK). We have also shown that an oscillatory strain reduces the passive stiffness of ASM and its ability to generate force. Here, we investigated the combined effect of inhibiting the ASM contraction with β2 agonist and decreasing the ASM cytoskeletal stiffness with ROCK inhibitor and/or force oscillation (FO) on the relaxation of contracted ASM. We hypothesize that the ASM relaxation can be synergistically enhanced by the combination of these interventions, because drug-induced softening of the cytoskeleton enhances the FO-induced relaxation and vice versa. Sheep tracheal strips were isotonically contracted to acetylcholine (3 × 10−5 M). At the plateau of shortening, β2 agonist salbutamol (10−7 M), ROCK inhibitor H1152 (10−7 M), and FO (square wave, 1 Hz, amplitude 6% maximal active force) were applied either alone or in combination. After adjusting for nonspecific time-dependent variation, relengthening by individual interventions with low-dose salbutamol or H1152, or small amplitude FO was not significantly different from zero. However, significant relengthening was observed in all combination treatments. The relengthening was greater than the mathematical sum of relengthening caused by individual treatments thereby demonstrating synergistic relaxation. The ASM stiffness did not change with salbutamol or H1152 treatments, but was lower with FO in combination with H1152. The results suggest that the mechanopharmacological treatment can be an effective therapy for asthma. more...
- Published
- 2019
29. Asthma, Gender and the Epigenetic Clock
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Denise Daley, M. Wan, Celia M. T. Greenwood, A.B. Becker, Peter D. Paré, D. Vasileva, Edmond S. Chan, Catherine Laprise, and Andrew J. Sandford
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business.industry ,medicine ,Epigenetics ,Bioinformatics ,medicine.disease ,business ,Asthma - Published
- 2020
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30. An In-Situ Single Cell Atlas of the Terminal Bronchioles in Chronic Obstructive Pulmonary Disease by Imaging Mass Cytometry
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Tillie L. Hackett, Mark W. Elliott, H.-K. Koo, Steven Booth, Y. Wei, Dragoş M. Vasilescu, Peter D. Paré, Joel D. Cooper, James C. Hogg, D. Quail, Emmanuel T. Osei, and A. Hsieh
- Subjects
In situ ,Pathology ,medicine.medical_specialty ,Terminal Bronchioles ,medicine.anatomical_structure ,Atlas (anatomy) ,business.industry ,Cell ,medicine ,Pulmonary disease ,Mass cytometry ,business - Published
- 2020
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31. Correction: Lung eQTLs to Help Reveal the Molecular Underpinnings of Asthma.
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Ke Hao, Yohan Bossé, David C. Nickle, Peter D. Paré, Dirkje S. Postma, Michel Laviolette, Andrew Sandford, Tillie L. Hackett, Denise Daley, James C. Hogg, W. Mark Elliott, Christian Couture, Maxime Lamontagne, Corry-Anke Brandsma, Maarten van den Berge, Gerard Koppelman, Alise S. Reicin, Donald W. Nicholson, Vladislav Malkov, Jonathan M. Derry, Christine Suver, Jeffrey A. Tsou, Amit Kulkarni, Chunsheng Zhang, Rupert Vessey, Greg J. Opiteck, Sean P. Curtis, Wim Timens, and Don D. Sin more...
- Subjects
Genetics ,QH426-470 - Published
- 2012
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32. Lung eQTLs to help reveal the molecular underpinnings of asthma.
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Ke Hao, Yohan Bossé, David C Nickle, Peter D Paré, Dirkje S Postma, Michel Laviolette, Andrew Sandford, Tillie L Hackett, Denise Daley, James C Hogg, W Mark Elliott, Christian Couture, Maxime Lamontagne, Corry-Anke Brandsma, Maarten van den Berge, Gerard Koppelman, Alise S Reicin, Donald W Nicholson, Vladislav Malkov, Jonathan M Derry, Christine Suver, Jeffrey A Tsou, Amit Kulkarni, Chunsheng Zhang, Rupert Vessey, Greg J Opiteck, Sean P Curtis, Wim Timens, and Don D Sin more...
- Subjects
Genetics ,QH426-470 - Abstract
Genome-wide association studies (GWAS) have identified loci reproducibly associated with pulmonary diseases; however, the molecular mechanism underlying these associations are largely unknown. The objectives of this study were to discover genetic variants affecting gene expression in human lung tissue, to refine susceptibility loci for asthma identified in GWAS studies, and to use the genetics of gene expression and network analyses to find key molecular drivers of asthma. We performed a genome-wide search for expression quantitative trait loci (eQTL) in 1,111 human lung samples. The lung eQTL dataset was then used to inform asthma genetic studies reported in the literature. The top ranked lung eQTLs were integrated with the GWAS on asthma reported by the GABRIEL consortium to generate a Bayesian gene expression network for discovery of novel molecular pathways underpinning asthma. We detected 17,178 cis- and 593 trans- lung eQTLs, which can be used to explore the functional consequences of loci associated with lung diseases and traits. Some strong eQTLs are also asthma susceptibility loci. For example, rs3859192 on chr17q21 is robustly associated with the mRNA levels of GSDMA (P = 3.55 × 10(-151)). The genetic-gene expression network identified the SOCS3 pathway as one of the key drivers of asthma. The eQTLs and gene networks identified in this study are powerful tools for elucidating the causal mechanisms underlying pulmonary disease. This data resource offers much-needed support to pinpoint the causal genes and characterize the molecular function of gene variants associated with lung diseases. more...
- Published
- 2012
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33. DNA methylation profiles of airway epithelial cells and PBMCs from healthy, atopic and asthmatic children.
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Dorota Stefanowicz, Tillie-Louise Hackett, Farshid S Garmaroudi, Oliver P Günther, Sarah Neumann, Erika N Sutanto, Kak-Ming Ling, Michael S Kobor, Anthony Kicic, Stephen M Stick, Peter D Paré, and Darryl A Knight more...
- Subjects
Medicine ,Science - Abstract
Allergic inflammation is commonly observed in a number of conditions that are associated with atopy including asthma, eczema and rhinitis. However, the genetic, environmental or epigenetic factors involved in these conditions are likely to be different. Epigenetic modifications, such as DNA methylation, can be influenced by the environment and result in changes to gene expression.To characterize the DNA methylation pattern of airway epithelial cells (AECs) compared to peripheral blood mononuclear cells (PBMCs) and to discern differences in methylation within each cell type amongst healthy, atopic and asthmatic subjects.PBMCs and AECs from bronchial brushings were obtained from children undergoing elective surgery for non-respiratory conditions. The children were categorized as atopic, atopic asthmatic, non-atopic asthmatic or healthy controls. Extracted DNA was bisulfite treated and 1505 CpG loci across 807 genes were analyzed using the Illumina GoldenGate Methylation Cancer Panel I. Gene expression for a subset of genes was performed using RT-PCR.We demonstrate a signature set of CpG sites that are differentially methylated in AECs as compared to PBMCs regardless of disease phenotype. Of these, 13 CpG sites were specific to healthy controls, 8 sites were only found in atopics, and 6 CpGs were unique to asthmatics. We found no differences in the methylation status of PBMCs between disease phenotypes. In AECs derived from asthmatics compared to atopics, 8 differentially methylated sites were identified including CpGs in STAT5A and CRIP1. We demonstrate STAT5A gene expression is decreased whereas CRIP1 gene expression is elevated in the AECs from asthmatic compared to both healthy and atopic subjects.We characterized a cell specific DNA methylation signature for AECs compared to PBMCs regardless of asthmatic or atopic status. Our data highlight the importance of understanding DNA methylation in the epithelium when studying the epithelial contribution to asthma. more...
- Published
- 2012
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34. Direct PCR of Small Genomic DNA Fragments from Serum
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Andrew J. Sandford and Peter D. Paré
- Subjects
Biology (General) ,QH301-705.5 - Abstract
A simple and rapid method is described where human genomic DNA suitable for PCR was prepared from serum by microwave irradiation. We were able to reproducibly amplify single-copy gene sequences up to 442 bp from small quantities of serum without the need for DNA extraction. Genotyping results obtained from serum samples were shown to be identical to those derived from purified DNA from the same individuals. more...
- Published
- 1997
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35. The smoking gun: Genetics and genomics reveal causal pathways for COPD
- Author
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Peter D. Paré
- Subjects
0301 basic medicine ,Pulmonary and Respiratory Medicine ,Genetics ,COPD ,Genomics ,030204 cardiovascular system & hematology ,Biology ,Critical Care and Intensive Care Medicine ,medicine.disease ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,medicine ,Causal pathways - Published
- 2017
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36. Hyperresponsiveness: Relating the Intact Airway to the Whole Lung
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Peter D. Paré, Chun Y. Seow, and Kenneth R. Lutchen
- Subjects
Pathology ,medicine.medical_specialty ,Lung ,Physiology ,business.industry ,respiratory system ,030204 cardiovascular system & hematology ,Asthma ,respiratory tract diseases ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Inhalation ,030228 respiratory system ,Airway wall ,medicine ,Humans ,sense organs ,Bronchial Hyperreactivity ,Airway ,business - Abstract
We relate changes of the airway wall to the response of the intact airway and the whole lung. We address how mechanical conditions and specific structural changes for an airway contribute to hyperresponsiveness resistant to deep inspiration. This review conveys that the origins of hyperresponsiveness do not devolve into an abnormality at single structural level but require examination of the complex interplay of all the parts. more...
- Published
- 2017
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37. The Contribution of Small Airway Obstruction to the Pathogenesis of Chronic Obstructive Pulmonary Disease
- Author
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James C. Hogg, Tillie-Louise Hackett, and Peter D. Paré
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Physiology ,Small airways ,business.industry ,Reviews ,Pulmonary disease ,General Medicine ,respiratory system ,Airway obstruction ,medicine.disease ,respiratory tract diseases ,Pathogenesis ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030228 respiratory system ,Conducting airways ,Lung anatomy ,Physiology (medical) ,medicine ,business ,Molecular Biology - Abstract
The hypothesis that the small conducting airways were the major site of obstruction to airflow in normal lungs was introduced by Rohrer in 1915 and prevailed until Weibel introduced a quantitative method of studying lung anatomy in 1963. Green repeated Rohrer's calculations using Weibels new data in 1965 and found that the smaller conducting airways offered very little resistance to airflow. This conflict was resolved by seminal experiments conducted by Macklem and Mead in 1967, which confirmed that a small proportion of the total lower airways resistance is attributable to small airways more...
- Published
- 2017
- Full Text
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38. Responsiveness to Ipratropium Bromide in Male and Female Patients with Mild to Moderate Chronic Obstructive Pulmonary Disease
- Author
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Robert A. Wise, Xuan Li, John E. Connett, M. Obeidat, Guohai Zhou, Ke Hao, Philippe Joubert, Donald P. Tashkin, Corry-Anke Brandsma, David C. Nickle, Yohan Bossé, Don D. Sin, Maarten van den Berge, Peter D. Paré, Janice M. Leung, and Groningen Research Institute for Asthma and COPD (GRIAC) more...
- Subjects
Male ,lcsh:Medicine ,EMPHYSEMA ,Ipratropium bromide ,Gastroenterology ,FEV1 ,Pulmonary Disease, Chronic Obstructive ,0302 clinical medicine ,Bronchodilator ,030212 general & internal medicine ,Precision Medicine ,Lung ,BRONCHODILATOR ,2. Zero hunger ,COPD ,lcsh:R5-920 ,Ipratropium ,General Medicine ,respiratory system ,Bronchodilator Agents ,medicine.anatomical_structure ,Treatment Outcome ,Sex ,Female ,lcsh:Medicine (General) ,SMOKERS ,medicine.drug ,Research Paper ,medicine.medical_specialty ,SEX-DIFFERENCES ,medicine.drug_class ,Muscarinic Antagonists ,LUNG HEALTH ,Placebo ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Internal medicine ,medicine ,Humans ,Asthma ,GENDER-DIFFERENCES ,business.industry ,lcsh:R ,AIRWAY HYPERRESPONSIVENESS ,DIFFERENCE ,medicine.disease ,respiratory tract diseases ,Endocrinology ,030228 respiratory system ,ASTHMA ,Gene expression ,business ,Body mass index - Abstract
Introduction Although the prevalence of chronic obstructive pulmonary disease (COPD) is similar between men and women, current evidence used to support bronchodilator therapy has been generated in therapeutic trials that have predominately enrolled male patients. Here, we determined whether there is any significant sex-related differences in FEV1 responses to ipratropium bromide. Methods Data from the Lung Health Study (n = 5887; 37% females) were used to determine changes in FEV1 with ipratropium or placebo in male and female subjects with mild to moderate COPD over 5 years. Lung Expression Quantitative Trait Loci (eQTL) dataset was used to determine whether there were any sex-related differences in gene expression for muscarinic (M2 and M3) receptors in lungs of male and female patients. Results After 4 months, ipratropium therapy increased FEV1 by 6.0% in female and 2.9% in male subjects from baseline values (p = 2.42 × 10− 16). This effect was modified by body mass index (BMI) such that the biggest improvements in FEV1 with ipratropium were observed in thin female subjects (p for BMI ∗ sex interaction = 0.044). The sex-related changes in FEV1 related to ipratropium persisted for 2 years (p = 0.0134). Female compared with male lungs had greater gene expression for M3 relative to M2 receptors (p = 6.86 × 10− 8). Conclusion Ipratropium induces a larger bronchodilator response in female than in male patients and the benefits are particularly notable in non-obese females. Female lungs have greater gene expression for the M3 muscarinic receptor relative to M2 receptors than male lungs. Female patients are thus more likely to benefit from ipratropium than male COPD patients., Highlights • Ipratropium; a muscarinic antagonist bronchodilator is more effective in female COPD patients compared to males. • The effect was modified by body mass index (BMI) such that thin female subjects respond better. • Female compared with male lungs had greater gene expression for the M3/M2 ratio of muscarinic receptors. Most evidence used to support bronchodilator therapy in COPD has been generated in therapeutic trials with predominately male patients. Here, we determined whether there are any significant sex-related differences in lung function responses to the bronchodilator ipratropium bromide. After 4 months, ipratropium therapy increased lung function in females twice as much as males. This effect was modified by body mass index (BMI) such that the biggest improvements in lung function with ipratropium were observed in thin female subjects. Female compared with male lungs had greater gene expression for ipratropium receptors. Female patients are likely to benefit more from ipratropium than male COPD patients. more...
- Published
- 2017
39. Site and nature of airway obstruction in chronic obstructive lung disease: 50 years on
- Author
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Peter D. Paré
- Subjects
Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,business.industry ,Internal medicine ,medicine ,Cardiology ,Airway obstruction ,Critical Care and Intensive Care Medicine ,medicine.disease ,business ,Obstructive lung disease - Published
- 2019
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40. The Pharmacogenomics of Inhaled Corticosteroids and Lung Function Decline in COPD
- Author
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Maarten van den Berge, Xuan Li, Peter D. Paré, Rasika A. Mathias, Kathleen C. Barnes, Philippe Joubert, Ma'en Obeidat, Alen Faiz, Corry-Anke Brandsma, Nadia N. Hansel, Ke Hao, S. F. Paul Man, Ingo Ruczinski, Terri H. Beaty, Don D. Sin, Nicholas Rafaels, and Groningen Research Institute for Asthma and COPD (GRIAC) more...
- Subjects
0301 basic medicine ,Pulmonary and Respiratory Medicine ,Spirometry ,Male ,medicine.medical_specialty ,Triamcinolone acetonide ,Placebo ,Polymorphism, Single Nucleotide ,law.invention ,03 medical and health sciences ,Pulmonary Disease, Chronic Obstructive ,0302 clinical medicine ,Randomized controlled trial ,law ,Adrenal Cortex Hormones ,Internal medicine ,Forced Expiratory Volume ,Administration, Inhalation ,medicine ,Humans ,Fluticasone ,Aged ,COPD ,medicine.diagnostic_test ,business.industry ,Middle Aged ,medicine.disease ,3. Good health ,Clinical trial ,030104 developmental biology ,030228 respiratory system ,A549 Cells ,Pharmacogenetics ,Disease Progression ,Quality of Life ,Female ,business ,medicine.drug ,Genome-Wide Association Study - Abstract
Inhaled corticosteroids (ICS) are widely prescribed for patients with chronic obstructive pulmonary disease (COPD), yet have variable outcomes and adverse reactions, which may be genetically determined. The primary aim of the study was to identify the genetic determinants for forced expiratory volume in 1 s (FEV1) changes related to ICS therapy.In the Lung Health Study (LHS)-2, 1116 COPD patients were randomised to the ICS triamcinolone acetonide (n=559) or placebo (n=557) with spirometry performed every 6 months for 3 years. We performed a pharmacogenomic genome-wide association study for the genotype-by-ICS treatment effect on 3 years of FEV1 changes (estimated as slope) in 802 genotyped LHS-2 participants. Replication was performed in 199 COPD patients randomised to the ICS, fluticasone or placebo.A total of five loci showed genotype-by-ICS interaction at p−6; of these, single nucleotide polymorphism (SNP) rs111720447 on chromosome 7 was replicated (discovery p=4.8×10−6, replication p=5.9×10−5) with the same direction of interaction effect. ENCODE (Encyclopedia of DNA Elements) data revealed that in glucocorticoid-treated (dexamethasone) A549 alveolar cell line, glucocorticoid receptor binding sites were located near SNP rs111720447. In stratified analyses of LHS-2, genotype at SNP rs111720447 was significantly associated with rate of FEV1 decline in patients taking ICS (C allele β 56.36 mL·year−1, 95% CI 29.96–82.76 mL·year−1) and in patients who were assigned to placebo, although the relationship was weaker and in the opposite direction to that in the ICS group (C allele β −27.57 mL·year−1, 95% CI −53.27– −1.87 mL·year−1).The study uncovered genetic factors associated with FEV1 changes related to ICS in COPD patients, which may provide new insight on the potential biology of steroid responsiveness in COPD. more...
- Published
- 2019
41. Upregulation of smooth muscle Rho-kinase protein expression in human asthma
- Author
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Chun Y. Seow, Pasquale Chitano, Peter D. Paré, and Lu Wang
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Pulmonary and Respiratory Medicine ,rho-Associated Kinases ,business.industry ,education ,Conflict of interest ,Library science ,Muscle, Smooth ,Airway smooth muscle ,Protein expression ,Asthma ,3. Good health ,Up-Regulation ,03 medical and health sciences ,0302 clinical medicine ,030228 respiratory system ,Smooth muscle ,Medicine ,Humans ,030212 general & internal medicine ,business ,Production team ,health care economics and organizations ,Muscle Contraction - Abstract
The lack of bronchodilatory response to deep inspiration in asthmatics is thought to be partially due to reduced airway distensibility [1, 2], possibly caused by an increase in airway smooth muscle (ASM) tone and stiffness [3]. Rho-kinase (ROCK) is known to play a role in regulating ASM tone [4] and ASM cytoskeletal stiffness [5]. Footnotes This manuscript has recently been accepted for publication in the European Respiratory Journal . It is published here in its accepted form prior to copyediting and typesetting by our production team. After these production processes are complete and the authors have approved the resulting proofs, the article will move to the latest issue of the ERJ online. Please open or download the PDF to view this article. Conflict of interest: Dr. Wang reports grants from Canadian Institutes of Health Research, grants from Natural Sciences and Engineering Research Council of Canada, grants from British Columbia Lung Association, during the conduct of the study. Conflict of interest: Dr. Chitano reports grants from Canadian Institutes of Health Research, grants from Natural Sciences and Engineering Research Council of Canada, grants from British Columbia Lung Association, during the conduct of the study. Conflict of interest: Dr. Pare reports grants from Canadian Institutes of Health Research, grants from Natural Sciences and Engineering Research Council of Canada, grants from British Columbia Lung Association, during the conduct of the study. Conflict of interest: Dr. Seow reports grants from Canadian Institutes of Health Research, grants from Natural Sciences and Engineering Research Council of Canada, grants from British Columbia Lung Association, during the conduct of the study. more...
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- 2019
42. The Pharmacogenomics of Inhaled Corticosteroids and Lung Function Decline in COPD Patients
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M. van den Berge, P. Man, Ma'en Obeidat, T.H. Beaty, R. Mathias, Alen Faiz, Xuan Li, Kathleen C. Barnes, Don D. Sin, Nadia N. Hansel, Peter D. Paré, K. Hao, Ingo Ruczinski, Nicholas Rafaels, Corry-Anke Brandsma, and Philippe Joubert more...
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medicine.medical_specialty ,Copd patients ,business.industry ,Pharmacogenomics ,Internal medicine ,medicine ,Inhaled corticosteroids ,business ,Lung function - Published
- 2019
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43. History of Respiratory Medicine in Canada: A New Canadian Respiratory Journal Series
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Louis-Philippe Boulet and Peter D Paré
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Diseases of the respiratory system ,RC705-779 - Published
- 2014
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44. Heterogeneity of airway wall dimensions in humans: a critical determinant of lung function in asthmatics and nonasthmatics
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Tillie-Louise Hackett, Peter D. Paré, Graham M. Donovan, Christopher D. Pascoe, and Chun Y. Seow
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Adult ,Male ,0301 basic medicine ,Pulmonary and Respiratory Medicine ,medicine.medical_specialty ,Pathology ,Adolescent ,Physiology ,Airflow obstruction ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Airway resistance ,Physiology (medical) ,Internal medicine ,Electric Impedance ,medicine ,Humans ,Child ,Lung ,Methacholine Chloride ,Lung function ,Demography ,Asthma ,business.industry ,Cell Biology ,Airway smooth muscle ,Middle Aged ,respiratory system ,medicine.disease ,Biomechanical Phenomena ,Respiratory Function Tests ,respiratory tract diseases ,Donor lungs ,030104 developmental biology ,030228 respiratory system ,Airway wall ,Child, Preschool ,Cardiology ,Female ,Airway ,business - Abstract
Airway remodeling, a key feature of asthma, alters every layer of the airway wall but most strikingly the airway smooth muscle (ASM) layer. Airway remodeling in asthmatics contributes to fixed airflow obstruction and can amplify airway narrowing caused by ASM activation. Previous modeling studies have shown that the increase in ASM mass has the largest effect on increasing maximal airway narrowing. Simulated heterogeneity in the dimensions and properties of the airway wall can further amplify airway narrowing. Using measurements made on histological sections from donor lungs, we show for the first time that there is profound heterogeneity of ASM area and wall area in both nonasthmatics and asthmatics. Using a mathematical model, we found that this heterogeneity, together with changes in the mean values, contributes to an increased baseline resistance and elastance in asthmatics as well as a leftward shift in the responsiveness of the airways to a simulated agonist in both nonasthmatics and asthmatics. The ability of heterogeneous wall dimensions to shift the dose-response curve is largely due to an increased susceptibility for the small airways to close. This research confirms that heterogeneity of airway wall dimensions can contribute to exaggerated airway narrowing and provides an actual assessment of the magnitude of these effects. more...
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- 2017
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45. Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis
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Ruth Tal-Singer, Dandi Qiao, David A. Lomas, David A. Schwartz, Robert P. Chase, Amund Gulsvik, Maxime Lamontagne, Judith M. Vonk, George T. O'Connor, Matthijs Oudkerk, Iwona Hawryłkiewicz, Per Bakke, Harry J. de Koning, Eugene R. Bleecker, Terri H. Beaty, Mi Kyeong Lee, Peter D. Paré, Nora Franceschini, Lies Lahousse, Deborah A. Meyers, Nicholas Locantore, María Soler Artigas, Xin-Qun Wang, Wim Timens, James D. Crapo, Victoria E. Jackson, Jemma B. Wilk, Jørgen Vestbo, Megan Hardin, Pawel Sliwinski, Stephen I. Rennard, Prescott G. Woodruff, Dirkje S. Postma, Peter J. Castaldi, Jae-Joon Yim, Stephen S. Rich, Guy Brusselle, Elizabeth J. Ampleford, Nick Shrine, R. Graham Barr, Harry J.M. Groen, André G. Uitterlinden, Shuguang Leng, Deog Kyeom Kim, Yohan Bossé, Steven A. Belinsky, William MacNee, Bruce M. Psaty, Stephanie J. London, Augusto A. Litonjua, Brian D. Hobbs, Traci M. Bartz, David P. Strachan, Martin D. Tobin, Woo Jin Kim, Ani Manichaikul, Ian P. Hall, Tasha E. Fingerlin, Kim de Jong, Sina A. Gharib, Louise V. Wain, John E. Hokanson, Josée Dupuis, Yohannes Tesfaigzi, Bruno H. Stricker, Edwin K. Silverman, Yeon-Mok Oh, Kari E. North, Susan R. Heckbert, Jan Willem J. Lammers, Annah B. Wyss, Jeanne C. Latourelle, David Sparrow, Michael H. Cho, Pieter Zanen, H. Marike Boezen, Damage and Repair in Cancer Development and Cancer Treatment (DARE), Guided Treatment in Optimal Selected Cancer Patients (GUTS), Groningen Research Institute for Asthma and COPD (GRIAC), Life Course Epidemiology (LCE), Psychiatry, Public Health, Epidemiology, Pulmonary Medicine, and Internal Medicine more...
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Male ,0301 basic medicine ,Pulmonary Fibrosis ,Genome-wide association study ,EMPHYSEMA ,VARIANTS ,SUSCEPTIBILITY ,Genome-wide association studies ,AIR-FLOW OBSTRUCTION ,Pulmonary Disease, Chronic Obstructive ,Risk Factors ,Pulmonary fibrosis ,Lung ,Aged, 80 and over ,Genetics ,COPD ,education.field_of_study ,I INTERFERON ,Smoking ,Middle Aged ,Phenotype ,medicine.anatomical_structure ,Female ,Adult ,Population ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Journal Article ,medicine ,Humans ,Genetic Predisposition to Disease ,SMOKING-BEHAVIOR ,Allele ,GENOME-WIDE ASSOCIATION ,education ,Alleles ,Aged ,Genetic association ,Asthma ,Respiratory tract diseases ,COMPLEX TRAITS ,medicine.disease ,SURFACTANT PROTEIN-D ,respiratory tract diseases ,030104 developmental biology ,Genetic Loci ,Immunology ,Genome-Wide Association Study - Abstract
Chronic obstructive pulmonary disease (COPD) is a leading cause of mortality worldwide(1). We performed a genetic association study in 15,256 cases and 47,936 controls, with replication of select top results (P more...
- Published
- 2017
46. Micro–Computed Tomography Comparison of Preterminal Bronchioles in Centrilobular and Panlobular Emphysema
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Peter D. Paré, John E. McDonough, Joel D. Cooper, Daisuke Kinose, Masaru Suzuki, James C. Hogg, Dragoş M. Vasilescu, and Naoya Tanabe
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Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Lung ,medicine.diagnostic_test ,business.industry ,Micro computed tomography ,Bronchiolar wall ,Computed tomography ,respiratory system ,030204 cardiovascular system & hematology ,Critical Care and Intensive Care Medicine ,respiratory tract diseases ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Terminal Bronchioles ,030228 respiratory system ,Multidetector computed tomography ,Centrilobular emphysema ,Medicine ,business - Abstract
Rationale: Very little is known about airways that are too small to be visible on thoracic multidetector computed tomography but larger than the terminal bronchioles.Objectives: To examine the structure of preterminal bronchioles located one generation proximal to terminal bronchioles in centrilobular and panlobular emphysema.Methods: Preterminal bronchioles were identified by backtracking from the terminal bronchioles, and their centerlines were established along the entire length of their lumens. Multiple cross-sectional images perpendicular to the centerline were reconstructed to evaluate the bronchiolar wall and lumen, and the alveolar attachments to the outer airway walls in relation to emphysematous destruction in 28 lung samples from six patients with centrilobular emphysema, 20 lung samples from seven patients with panlobular emphysema associated with alpha-1 antitrypsin deficiency, and 47 samples from seven control (donor) lungs.Measurements and Main Results: The preterminal bronchiolar length, w... more...
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- 2017
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47. Genetic variants affecting cross-sectional lung function in adults show little or no effect on longitudinal lung function decline
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María Soler Artigas, Peter D. Paré, Martin D. Tobin, Scott A. Jelinsky, Nicholas M. Rafaels, Nadia N. Hansel, Sune F. Nielsen, Kathleen C. Barnes, Jennie Hui, Arthur W. Musk, Børge G. Nordestgaard, John Beilby, Anders Mälarstig, Alan James, Catherine John, Signe Vedel-Krogh, Ian P. Hall, Louise V. Wain, Iain Kilty, and Nick Shrine more...
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Adult ,Male ,0301 basic medicine ,Pulmonary and Respiratory Medicine ,Spirometry ,Time Factors ,Genotype ,Cross-sectional study ,Genome-wide association study ,Risk Assessment ,Pulmonary function testing ,Pulmonary Disease, Chronic Obstructive ,03 medical and health sciences ,FEV1/FVC ratio ,Risk Factors ,Journal Article ,medicine ,Humans ,Genetic Predisposition to Disease ,Longitudinal Studies ,Genetic association ,COPD ,medicine.diagnostic_test ,business.industry ,Respiration ,Genetic Variation ,Western Australia ,Middle Aged ,respiratory system ,medicine.disease ,Respiratory Function Tests ,respiratory tract diseases ,Cross-Sectional Studies ,030104 developmental biology ,Cohort ,Immunology ,Disease Progression ,Female ,business ,Genome-Wide Association Study ,Demography - Abstract
BACKGROUND: Genome-wide association studies have identified numerous genetic regions that influence cross-sectional lung function. Longitudinal decline in lung function also includes a heritable component but the genetic determinants have yet to be defined.OBJECTIVES: We aimed to determine whether regions associated with cross-sectional lung function were also associated with longitudinal decline and to seek novel variants which influence decline.METHODS: We analysed genome-wide data from 4167 individuals from the Busselton Health Study cohort, who had undergone spirometry (12 695 observations across eight time points). A mixed model was fitted and weighted risk scores were calculated for the joint effect of 26 known regions on baseline and longitudinal changes in FEV1 and FEV1/FVC. Potential additional regions of interest were identified and followed up in two independent cohorts.RESULTS: The 26 regions previously associated with cross-sectional lung function jointly showed a strong effect on baseline lung function (p=4.44×10-16 for FEV1/FVC) but no effect on longitudinal decline (p=0.160 for FEV1/FVC). This was replicated in an independent cohort. 39 additional regions of interest (48 variants) were identified; these associations were not replicated in two further cohorts.CONCLUSIONS: Previously identified genetic variants jointly have a strong effect on cross-sectional lung function in adults but little or no effect on the rate of decline of lung function. It is possible that they influence COPD risk through lung development. Although no genetic variants have yet been associated with lung function decline at stringent genome-wide significance, longitudinal change in lung function is heritable suggesting that there is scope for future discoveries. more...
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- 2017
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48. Genome-wide association analyses for lung function and chronic obstructive pulmonary disease identify new loci and potential druggable targets
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Stefan Enroth, Robert J. Hall, James D. Crapo, Frederick E. Dewey, Victoria E. Jackson, Eleftheria Zeggini, Gudmar Thorleifsson, Terho Lehtimäki, David J. Porteous, Nicole Probst-Hensch, Ian J. Deary, A. Mesut Erzurumluoglu, Bram P. Prins, Maarten van den Berge, Craig E. Pennell, Catherine John, Terri H. Beaty, Claudia Schurmann, Michael H. Cho, Veronique Vitart, Erwin P. Bottinger, Carol A. Wang, H. Lester Kirchner, Medea Imboden, David J. Carey, Archie Campbell, Kari Stefansson, Matthias Wielscher, Ida Surakka, Igor Rudan, Shona M. Kerr, Holger Schulz, Michael A. Portelli, Thorarinn Gislason, Peter D. Paré, James F. Wilson, Boris Noyvert, Beate Stubbe, Zhengming Chen, Ruth J. F. Loos, Ma'en Obeidat, María Soler Artigas, Philippe Joubert, Kathleen C. Barnes, Christian Gieger, Andrew P. Morris, Rajesh Rawal, Yohan Bossé, Peter K. Joshi, Nadia N. Hansel, Emily S. Wan, David M. Evans, David C. Nickle, Caroline Hayward, Stefan Karrasch, Ke Hao, Tracy L. Rimington, Don D. Sin, Alan James, Stefan Jonsson, Shannon Bruse, Amanda P. Henry, Iona Y Millwood, Lara Bossini-Castillo, Ian P. Hall, David Sparrow, Ulf Gyllensten, Ian Sayers, Edwin K. Silverman, Robert Busch, David P. Strachan, Martin D. Tobin, Nick Shrine, Louise V. Wain, Robin G. Walters, Ingileif Jonsdottir, Peter D. Sly, Liming Li, Charlotte K. Billington, Anna Hansell, Omri Gottesman, Om P Kurmi, Ingo Ruczinski, Nicholas J. Wareham, Amund Gulsvik, Per Bakke, Jennie Hui, Corry-Anke Brandsma, Gosia Trynka, Anthony G. Fenech, Brian D. Hobbs, A. John Henderson, Jonathan Marten, Olli T. Raitakari, Richard J. Allen, Augusto A. Litonjua, Sarah E. Harris, Ozren Polasek, Mika Kähönen, Tineka Blake, Marjo-Riitta Järvelin, Rasika A. Mathias, Jing Hua Zhao, Julien Vaucher, Girish N. Nadkarni, Christopher E. Brightling, Groningen Research Institute for Asthma and COPD (GRIAC), Wareham, Nicholas [0000-0003-1422-2993], Zhao, Jing Hua [0000-0003-4930-3582], Marten, Jonathan [0000-0001-6916-2014], and Apollo - University of Cambridge Repository more...
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Male ,0301 basic medicine ,Oncology ,Genome-wide association study ,heart disease ,VARIANTS ,SUSCEPTIBILITY ,Epigenesis, Genetic ,AIR-FLOW OBSTRUCTION ,Pulmonary Disease, Chronic Obstructive ,Risk Factors ,HISTORY ,GWAS ,EPIDEMIOLOGY ,Lung ,POPULATION ,Cause of death ,Genetics & Heredity ,Aged, 80 and over ,education.field_of_study ,COPD ,Framingham Risk Score ,Chronic obstructive pulmonary disease ,Heart ,11 Medical And Health Sciences ,Middle Aged ,3. Good health ,Female ,HEALTH ,Life Sciences & Biomedicine ,Adult ,medicine.medical_specialty ,Population ,genome-wide, lungs, target ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,Internal medicine ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Allele ,education ,Alleles ,Aged ,Asthma ,Science & Technology ,ta1184 ,Odds ratio ,06 Biological Sciences ,ta3121 ,medicine.disease ,Lung function ,respiratory tract diseases ,030104 developmental biology ,Genetic Loci ,FAM13A ,Immunology ,Lungs ,Pulmonary disease ,Developmental Biology ,Genome-Wide Association Study - Abstract
Chronic obstructive pulmonary disease (COPD) is characterized by reduced lung function and is the third leading cause of death globally. Through genome-wide association discovery in 48,943 individuals, selected from extremes of the lung function distribution in UK Biobank, and follow-up in 95,375 individuals, we increased the yield of independent signals for lung function from 54 to 97. A genetic risk score was associated with COPD susceptibility (odds ratio per 1 s.d. of the risk score (similar to 6 alleles) (95% confidence interval) = 1.24 (1.20-1.27), P = 5.05 x 10(-49)), and we observed a 3.7-fold difference in COPD risk between individuals in the highest and lowest genetic risk score deciles in UK Biobank. The 97 signals show enrichment in genes for development, elastic fibers and epigenetic regulation pathways. We highlight targets for drugs and compounds in development for COPD and asthma (genes in the inositol phosphate metabolism pathway and CHRM3) and describe targets for potential drug repositioning from other clinical indications. more...
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- 2017
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49. Influence ofSIGLEC9polymorphisms on COPD phenotypes including exacerbation frequency
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Takashi Motegi, Shinobu Kitazume, Congxiao Gao, Kozui Kida, Takeo Ishii, Peter D. Paré, Michael H. Cho, Edwin K. Silverman, Takashi Angata, Naoyuki Taniguchi, Emily S. Wan, Akihiko Gemma, David A. Lomas, and Kazuaki Ohtsubo more...
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0301 basic medicine ,Pulmonary and Respiratory Medicine ,COPD ,Exacerbation ,business.industry ,Haplotype ,Single-nucleotide polymorphism ,respiratory system ,medicine.disease ,respiratory tract diseases ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030228 respiratory system ,Genotype ,Immunology ,medicine ,Population study ,Allele ,Risk factor ,business - Abstract
Background and objective The exacerbation-prone phenotype of COPD is particularly important, as exacerbations lead to poor quality of life and disease progression. We previously found that COPD patients who lack Siglec-14, a myeloid cell protein that recognizes bacteria and triggers inflammatory responses, are less prone to exacerbation. We hypothesized that the variations in other SIGLEC genes could also influence COPD exacerbation frequency, and investigated the association between SIGLEC9 polymorphisms and the exacerbation-prone phenotype of COPD. Methods We examined whether SIGLEC9 polymorphisms affect the frequency of COPD exacerbation in 135 subjects within our study population, and also analysed the correlation between the genotypes and the severity of airflow obstruction and emphysema in 362 Japanese smokers including 244 COPD patients. The association between these single nucleotide polymorphisms (SNPs) and COPD phenotypes were also assessed in a Caucasian population of ECLIPSE study. The effects of these coding SNPs (cSNPs) on Siglec-9 protein functions were analysed using in vitro assays. Results The G allele of rs2075803 and rs2075803 G/rs2258983 A(GA) haplotype in SIGLEC9 was associated with higher frequency of exacerbations and the extent of emphysema in COPD. These results did not replicate in the ECLIPSE study. A myeloid cell line expressing the Siglec-9 variant corresponding to GA haplotype produced more TNF-α than the one expressing the variant corresponding to the other major haplotype. Conclusion The SIGLEC9 rs2075803 G/rs2258983 A haplotype, which corresponds to a Siglec-9 variant that is less effective at suppressing inflammatory response, may be a risk factor for the development of emphysema. more...
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- 2016
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50. Susceptibility genes for lung diseases in the major histocompatibility complex revealed by lung expression quantitative trait loci analysis
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Don D. Sin, Ke Hao, Philippe Joubert, Michel Laviolette, Yohan Bossé, Wim Timens, Dirkje S. Postma, David C. Nickle, Maxime Lamontagne, Peter D. Paré, Groningen Research Institute for Asthma and COPD (GRIAC), and Guided Treatment in Optimal Selected Cancer Patients (GUTS) more...
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Lung Diseases ,Male ,0301 basic medicine ,Pulmonary and Respiratory Medicine ,Pathology ,medicine.medical_specialty ,Quantitative Trait Loci ,Quantitative trait locus ,Major histocompatibility complex ,Polymorphism, Single Nucleotide ,Major Histocompatibility Complex ,03 medical and health sciences ,0302 clinical medicine ,Pulmonary fibrosis ,medicine ,Humans ,Genetic Predisposition to Disease ,Lung cancer ,Idiopathic interstitial pneumonia ,Asthma ,Lung ,biology ,business.industry ,PULMONARY-FIBROSIS ,respiratory system ,medicine.disease ,3. Good health ,respiratory tract diseases ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Expression quantitative trait loci ,Immunology ,biology.protein ,Female ,business - Abstract
The major histocompatibility complex (MHC) has been linked with hundreds of diseases [1]. The MHC is one of the most complex regions of the human genome, because of the high gene density, extended linkage disequilibrium (LD) and sequence diversity [2]. Recent genome-wide association studies (GWAS) have identified polymorphisms located in the MHC that are associated with lung diseases and related traits: asthma, cystic fibrosis, idiopathic interstitial pneumonia, lung cancer and lung function. However, due to the limitations of GWAS and tissue-specific characteristics of gene expression [3], the causal genes and genetic mechanisms mediating the heritable risk within this locus remain to be found. more...
- Published
- 2016
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- View/download PDF
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