600 results on '"Pereira SP"'
Search Results
2. PWE-210 Needle-based confocal laser endomicrosocpy for pancreatic cystic lesions: initial results from the UK concyst study
- Author
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Keane, MG, Stefanescu, D, Cieplik, N, Fusai, GK, Thorburn, D, Metz, A, and Pereira, SP
- Published
- 2015
- Full Text
- View/download PDF
3. OC-108 Improving the diagnosis of pancreaticobiliary malignancy by the detection of minichromosome maintenance protein 5 in biliary brushings
- Author
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Keane, MG, Huggett, MT, Johnson, GJ, Chapman, MH, Webster, GJ, Thorburn, D, MacKay, J, and Pereira, SP
- Published
- 2015
- Full Text
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4. Boerhaave’s Syndrome - An Unusual Presentation of Eosinophilic Oesophagitis
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Pereira Sp, Sivalokanathan S, Magee C, and Goodchild G
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medicine.medical_specialty ,S syndrome ,business.industry ,medicine ,Eosinophilic oesophagitis ,Presentation (obstetrics) ,business ,Dermatology - Published
- 2021
5. OC-074 Nutritional Optimisation and Pancreatic Enzyme Supplementation in Chronic Pancreatitis: are we Giving our Patient’s Enough Advice?
- Author
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Paranandi, B, Patel, PS, Joshi, D, El-Sayed, GH, Koshy, K, Ghai, A, Chapman, MH, Pereira, SP, Webster, GJ, and Johnson, GJ
- Published
- 2014
- Full Text
- View/download PDF
6. OC-072 Use of a Novel Self-expanding Metal Stent to Allow for Endoscopic Drainage and Necrosectomy of Pancreatic Fluid Collections
- Author
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Huggett, MT, Oppong, KW, Pereira, SP, Mitra, V, Charnley, RM, and Nayar, MK
- Published
- 2014
- Full Text
- View/download PDF
7. OC-068 The Impact of Endoscopic Therapy on Patient-perceived Outcome and Quality of Life in Sphincter of Oddi Dysfunction
- Author
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Paranandi, B, Cheung, VTF, Joshi, D, El-Sayed, GH, Johnson, GJ, Pereira, SP, Webster, GJ, and Chapman, MH
- Published
- 2014
- Full Text
- View/download PDF
8. OC-037 The Increasing Role of Enhanced Sedation Assisted Ercp: Important Lessons for Service Provision
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Joshi, D, Paranandi, B, El Sayed, G, Johnson, G, Chapman, MH, Pereira, SP, and Webster, GJ
- Published
- 2014
- Full Text
- View/download PDF
9. KRAS-mutated iCCA display distinct molecular alterations and a preferential sensitivity towards PARP-1 inhibition
- Author
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Keggenhoff, FL, additional, Castven, D, additional, Becker, D, additional, Pereira, SP, additional, Hartmann, M, additional, Straub, B, additional, Fahrer, J, additional, Andersen, JB, additional, Matter, MS, additional, Rössler, S, additional, Kaina, B, additional, Galle, PR, additional, and Marquardt, JU, additional
- Published
- 2021
- Full Text
- View/download PDF
10. KRAS-mutated intrahepatic cholangiocarcinoma shows preferential sensitivity towards PARP-1-based interventions
- Author
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Mahn, FL, additional, Castven, D, additional, Pereira, SP, additional, Hartmann, M, additional, Fahrer, J, additional, Andersen, JB, additional, Matter, MS, additional, Gaiser, T, additional, Rössler, S, additional, Galle, PR, additional, and Marquardt, JU, additional
- Published
- 2020
- Full Text
- View/download PDF
11. Mitochondrial respiratory states and rate
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Gnaiger, E., Aasander Frostner, E., Abdul Karim, N., Abumrad, NA., Acuna-Castroviejo, D., Adiele, RC., Ahn, B., Ali, SS., Alton, L., Alves, MG., Amati, F., Amoedo, ND., Andreadou, I., Arago, M., Aral, C., Arandarcikaite, O., Armand, AS., Arnould, T., Avram, VF., Bailey, DM., Bajpeyi, S., Bajzikova, M., Bakker, BM., Barlow, J., Bastos Sant'Anna Silva, AC., Batterson, P., Battino, M., Bazil, J., Beard, DA., Bednarczyk, P., Bello, F., Ben-Shachar, D., Bergdahl, A., Berge, RK., Bergmeister, L., Bernardi, P., Berridge, MV., Bettinazzi, S., Bishop, D., Blier, PU., Blindheim, DF., Boardman, NT., Boetker, HE., Borchard, S., Boros, M., Borsheim, E., Borutaite, V., Botella, J., Bouillaud, F., Bouitbir, J., Boushel, RC., Bovard, J., Breton, S., Brown, DA., Brown, GC., Brown, RA., Brozinick, JT., Buettner, GR., Burtscher, J., Calabria, E., Calbet, JA., Calzia, E., Cannon, DT., Cano Sanchez, M., Canto, AC., Cardoso, LHD., Carvalho, E., Casado Pinna, M., Cassar, S., Cassina, AM., Castelo, MP., Castro, L., Cavalcanti-de-Albuquerque, JP., Cervinkova, Z., Chabi, B., Chakrabarti, L., Chakrabarti, S., Chaurasia, B., Chen, Q., Chicco, AJ., Chinopoulos, C., Chowdhury, SK., Cizmarova, B., Clementi, E., Coen, PM., Cohen, BH., Coker, RH., Collin, A., Crisostomo, L., Dahdah, N., Dalgaard, LT., Dambrova, M., Danhelovska, T., Darveau, CA., Das, AM., Dash, RK., Davidova, E., Davis, MS., De Goede, P., De Palma, C., Dembinska-Kiec, A., Detraux, D., Devaux, Y., Di Marcello, M., Dias, TR., Distefano, G., Doermann, N., Doerrier, C., Dong, L., Donnelly, C., Drahota, Z., Duarte, FV., Dubouchaud, H., Duchen, MR., Dumas, JF., Durham, WJ., Dymkowska, D., Dyrstad, SE., Dyson, A., Dzialowski, EM., Eaton, S., Ehinger, J., Elmer, E., Endlicher, R., Engin, AB., Escames, G., Ezrova, Z., Falk, MJ., Fell, DA., Ferdinandy, P., Ferko, M., Ferreira, JCB., Ferreira, R., Ferri, A., Fessel, JP., Filipovska, A., Fisar, Z., Fischer, C., Fischer, M., Fisher, G., Fisher, JJ., Ford, E., Fornaro, M., Galina, A., Galkin, A., Gallee, L., Galli, GL., Gama Perez, P., Gan, Z., Ganetzky, R., Garcia-Rivas, G., Garcia-Roves, PM., Garcia-Souza, LF., Garipi, E., Garlid, KD., Garrabou, G., Garten, A., Gastaldelli, A., Gayen, J., Genders, AJ., Genova, ML., Giovarelli, M., Goncalo Teixeira da Silva, R., Goncalves, DF., Gonzalez-Armenta, JL., Gonzalez-Freire, M., Gonzalo, H., Goodpaster, BH., Gorr, TA., Gourlay, CW., Granata, C., Grefte, S., Guarch, ME., Gueguen, N., Gumeni, S., Haas, CB., Haavik, J., Haendeler, J., Haider, M., Hamann, A., Han, J., Han, WH., Hancock, CR., Hand, SC., Handl, J., Hargreaves, IP., Harper, ME., Harrison, DK., Hassan, H., Hausenloy, DJ., Heales, SJR., Heiestad, C., Hellgren, KT., Hepple, RT., Hernansanz-Agustin, P., Hewakapuge, S., Hickey, AJ., Ho, DH., Hoehn, KL., Hoel, F., Holland, OJ., Holloway, GP., Hoppel, CL., Hoppel, F., Houstek, J., Huete-Ortega, M., Hyrossova, P., Iglesias-Gonzalez, J., Irving, BA., Isola, R., Iyer, S., Jackson, CB., Jadiya, P., Jana, PF., Jang, DH., Jang, YC., Janowska, J., Jansen, K., Jansen-Duerr, P., Jansone, B., Jarmuszkiewicz, W., Jaskiewicz, A., Jedlicka, J., Jespersen, NR., Jha, RK., Jurczak, MJ., Jurk, D., Kaambre, T., Kaczor, JJ., Kainulainen, H., Kampa, RP., Kandel, SM., Kane, DA., Kapferer, W., Kappler, L., Karabatsiakis, A., Karavaeva, I., Karkucinska-Wieckowska, A., Kaur, S., Keijer, J., Keller, MA., Keppner, G., Khamoui, AV., Kidere, D., Kilbaugh, T., Kim, HK., Kim, JKS., Klepinin, A., Klepinina, L., Klingenspor, M., Klocker, H., Komlodi, T., Koopman, WJH., Kopitar-Jerala, N., Kowaltowski, AJ., Kozlov, AV., Krajcova, A., Krako Jakovljevic, N., Kristal, BS., Krycer, JR., Kuang, J., Kucera, O., Kuka, J., Kwak, HB., Kwast, K., Laasmaa, M., Labieniec-Watala, M., Lagarrigue, S., Lai, N., Land, JM., Lane, N., Laner, V., Lanza, IR., Laranjinha, J., Larsen, TS., Lavery, GG., Lazou, A., Lee, HK., Leeuwenburgh, C., Lehti, M., Lemieux, H., Lenaz, G., Lerfall, J., Li, PA., Li Puma, L., Liepins, E., Liu, J., Lopez, LC., Lucchinetti, E., Ma, T., Macedo, MP., Maciej, S., MacMillan-Crow, LA., Majtnerova, P., Makarova, E., Makrecka-Kuka, M., Malik, AN., Markova, M., Martin, DS., Martins, AD., Martins, JD., Maseko, TE., Maull, F., Mazat, JP., McKenna, HT., McKenzie, M., Menze, MA., Merz, T., Meszaros, AT., Methner, A., Michalak, S., Moellering, DR., Moisoi, N., Molina, AJA., Montaigne, D., Moore, AL., Moreau, K., Moreira, BP., Moreno-Sanchez, R., Mracek, T., Muccini, AM., Munro, D., Muntane, J., Muntean, DM., Murray, AJ., Musiol, E., Nabben, M., Nair, KS., Nehlin, JO., Nemec, M., Neufer, PD., Neuzil, J., Neviere, R., Newsom, SA., Nozickova, K., O'Brien, KA., O'Gorman, D., Olgar, Y., Oliveira, B., Oliveira, MF., Oliveira, MT., Oliveira, PF., Oliveira, PJ., Orynbayeva, Z., Osiewacz, HD., Pak, YK., Pallotta, ML., Palmeira, CM., Parajuli, N., Passos, JF., Passrugger, M., Patel, HH., Pavlova, N., Pecina, P., Pedersen, TM., Pereira da Silva Grilo da Silva, F., Pereira, SP., Perez Valencia, JA., Perks, KL., Pesta, D., Petit, PX., Pettersen, IKN., Pichaud, N., Pichler, I., Piel, S., Pietka, TA., Pino, MF., Pirkmajer, S., Plangger, M., Porter, C., Porter, RK., Procaccio, V., Prochownik, EV., Prola, A., Pulinilkunnil, T., Puskarich, MA., Puurand, M., Radenkovic, F., Ramzan, R., Rattan, SIS., Reboredo, P., Renner-Sattler, K., Rial, E., Robinson, MM., Roden, M., Rodriguez, E., Rodriguez-Enriquez, S., Roesland, GV., Rohlena, J., Rolo, AP., Ropelle, ER., Rossignol, R., Rossiter, HB., Rubelj, I., Rybacka-Mossakowska, J., Saada, A., Safaei, Z., Saharnaz, S., Salin, K., Salvadego, D., Sandi, C., Saner, N., Sanz, A., Sazanov, LA., Scatena, R., Schartner, M., Scheibye-Knudsen, M., Schilling, JM., Schlattner, U., Schoenfeld, P., Schots, PC., Schulz, R., Schwarzer, C., Scott, GR., Selman, C., Shabalina, IG., Sharma, P., Sharma, V., Shevchuk, I., Shirazi, R., Shiroma, JG., Siewiera, K., Silber, AM., Silva, AM., Sims, CA., Singer, D., Singh, BK., Skolik, R., Smenes, BT., Smith, J., Soares, FAA., Sobotka, O., Sokolova, I., Sonkar, VK., Sowton, AP., Sparagna, GC., Sparks, LM., Spinazzi, M., Stankova, P., Starr, J., Stary, C., Stelfa, G., Stepto, NK., Stiban, J., Stier, A., Stocker, R., Storder, J., Sumbalova, Z., Suomalainen, A., Suravajhala, P., Svalbe, B., Swerdlow, RH., Swiniuch, D., Szabo, I., Szewczyk, A., Szibor, M., Tanaka, M., Tandler, B., Tarnopolsky, MA., Tausan, D., Tavernarakis, N., Tepp, K., Thakkar, H., Thapa, M., Thyfault, JP., Tomar, D., Ton, R., Torp, MK., Towheed, A., Tretter, L., Trewin, AJ., Trifunovic, A., Trivigno, C., Tronstad, KJ., Trougakos, IP., Truu, L., Tuncay, E., Turan, B., Tyrrell, DJ., Urban, T., Valentine, JM., Van Bergen, NJ., Van Hove, J., Varricchio, F., Vella, J., Vendelin, M., Vercesi, AE., Victor, VM., Vieira Ligo Teixeira, C., Vidimce, J., Viel, C., Vieyra, A., Vilks, K., Villena, JA., Vincent, V., Vinogradov, AD., Viscomi, C., Vitorino, RMP., Vogt, S., Volani, C., Volska, K., Votion, DM., Vujacic-Mirski, K., Wagner, BA., Ward, ML., Warnsmann, V., Wasserman, DH., Watala, C., Wei, YH., Whitfield, J., Wickert, A., Wieckowski, MR., Wiesner, RJ., Williams, CM., Winwood-Smith, H., Wohlgemuth, SE., Wohlwend, M., Wolff, JN., Wrutniak-Cabello, C., Wuest, RCI., Yokota, T., Zablocki, K., Zanon, A., Zanou, N., Zaugg, K., Zaugg, M., Zdrazilova, L., Zhang, Y., Zhang, YZ., Zikova, A., Zischka, H., Zorzano, A., and Zvejniece, L.
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Mitochondrial respiratory control, coupling control, mitochondrial preparations, protonmotive force, uncoupling, oxidative phosphorylation, OXPHOS, efficiency, electron transfer, ET ,proton leak, LEAK, residual oxygen consumption, ROX, State 2, State 3, State 4, normalization, flow, flux, O2 - Abstract
As the knowledge base and importance of mitochondrial physiology to human health expands, the necessity for harmonizing the terminologyconcerning mitochondrial respiratory states and rates has become increasingly apparent. Thechemiosmotic theoryestablishes the mechanism of energy transformationandcoupling in oxidative phosphorylation. Theunifying concept of the protonmotive force providestheframeworkfordeveloping a consistent theoretical foundation ofmitochondrial physiology and bioenergetics.We followguidelines of the International Union of Pure and Applied Chemistry(IUPAC)onterminology inphysical chemistry, extended by considerationsofopen systems and thermodynamicsof irreversible processes.Theconcept-driven constructive terminology incorporates the meaning of each quantity and alignsconcepts and symbols withthe nomenclature of classicalbioenergetics. We endeavour to provide a balanced view ofmitochondrial respiratory control and a critical discussion on reporting data of mitochondrial respiration in terms of metabolic flows and fluxes.Uniform standards for evaluation of respiratory states and rates will ultimatelycontribute to reproducibility between laboratories and thussupport the development of databases of mitochondrial respiratory function in species, tissues, and cells.Clarity of concept and consistency of nomenclature facilitate effective transdisciplinary communication, education, and ultimately further discovery.
- Published
- 2019
12. FTY720 treatment starting after onset of symptoms reverses synaptic and memory deficits in an AD mouse model
- Author
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Kartalou G-I, Salgueiro Pereira SP, Endres T, Lesnikova A, Casarotto P, Pousinha P, Delanoe K, Edelmann E, Castrén E, Gottmann K, Marie H, Lessmann V.
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- 2019
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13. Diagnostic and prognostic biomarkers in cholangiocarcinoma
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Macias, R, Kornek, M, Rodrigues, P, Paiva, N, Castro, R, Urban, S, Pereira, S, Cadamuro, M, Rupp, C, Loosen, S, Luedde, T, Banales, J, Macias, RIR, Rodrigues, PM, Paiva, NA, Castro, RE, Pereira, SP, Loosen, SH, Banales, JM, Macias, R, Kornek, M, Rodrigues, P, Paiva, N, Castro, R, Urban, S, Pereira, S, Cadamuro, M, Rupp, C, Loosen, S, Luedde, T, Banales, J, Macias, RIR, Rodrigues, PM, Paiva, NA, Castro, RE, Pereira, SP, Loosen, SH, and Banales, JM
- Abstract
The high mortality rate of cholangiocarcinoma (CCA) is due, in part, to the lack of non-invasive approaches able to accurately detect this silent tumour at early stages, when therapeutic options can be potentially curative or may at least increase the overall survival of patients. The fact that the majority of CCA tumours are not linked to any known aetiological factor highly compromises the monitoring of patients at risk for tumour development and also their early diagnosis. Combination of clinical/biochemical features, imaging techniques and analysis of non-specific tumour biomarkers in serum are commonly used to help in the diagnosis of CCA, but tumour biopsy is usually required to confirm the diagnosis. Moreover, no prognostic biomarkers are currently used in the clinical setting, deserving more innovative research, and international validation and consensus. Important efforts have been made in the last few years to identify accurate non-invasive biomarkers, by using innovative techniques and high-throughput omics technologies. This review summarizes and discusses the advances in the investigation of novel diagnostic and prognostic biomarkers in CCA and envisions the future directions in this field of research.
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- 2019
14. Identification of a serum biomarker panel for the differential diagnosis of cholangiocarcinoma and primary sclerosing cholagnitis
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Cuenco, J, Wehnert, N, Blyuss, O, Kazarian, A, Whitwell, HJ, Menon, U, Dawnay, A, Manns, MP, Pereira, SP, and Timms, JF
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biliary tract cancer ,differential diagnosis ,serum biomarker ,primary sclerosing cholangitis ,cholangiocarcinoma - Abstract
The non-invasive differentiation of malignant and benign biliary disease is a clinical challenge. Carbohydrate antigen 19-9 (CA19-9), leucine-rich α2-glycoprotein (LRG1), interleukin 6 (IL6), pyruvate kinase M2 (PKM2), cytokeratin 19 fragment (CYFRA21.1) and mucin 5AC (MUC5AC) have reported utility for differentiating cholangiocarcinoma (CCA) from benign biliary disease. Herein, serum levels of these markers were tested in 66 cases of CCA and 62 cases of primary sclerosing cholangitis (PSC) and compared with markers of liver function and inflammation. Markers panels were assessed for their ability to discriminate malignant and benign disease. Several of the markers were also assessed in pre-diagnosis biliary tract cancer (BTC) samples with performances evaluated at different times prior to diagnosis. We show that LRG1 and IL6 were unable to accurately distinguish CCA from PSC, whereas CA19-9, PKM2, CYFRA21.1 and MUC5AC were significantly elevated in malignancy. Area under the receiver operating characteristic curves for these individual markers ranged from 0.73–0.84, with the best single marker (PKM2) providing 61% sensitivity at 90% specificity. A panel combining PKM2, CYFRA21.1 and MUC5AC gave 76% sensitivity at 90% specificity, which increased to 82% sensitivity by adding gamma-glutamyltransferase (GGT). In the pre-diagnosis setting, LRG1, IL6 and PKM2 were poor predictors of BTC, whilst CA19-9 and C-reactive protein were elevated up to 2 years before diagnosis. In conclusion, LRG1, IL6 and PKM2 were not useful for early detection of BTC, whilst a model combining PKM2, CYFRA21.1, MUC5AC and GGT was beneficial in differentiating malignant from benign biliary disease, warranting validation in a prospective trial.
- Published
- 2018
15. P49 Birthweight, lifetime obesity and physical functioning in mid-adulthood: a nationwide birth cohort study
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Rogers, NT, primary, Power, C, additional, and Pereira, SP, additional
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- 2019
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16. OP11 Premature mortality in adult survivors of child abuse and neglect
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Rogers, NT, primary, Power, C, additional, and Pereira, SP, additional
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- 2019
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17. P01 Childhood socio-economic position and midlife physical functioning: exploring associations and underlying mechanisms in the 1958 british birth cohort
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Ahmed, A, primary and Pereira, SP, additional
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- 2019
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18. ENDOSCOPIC ULTRASOUND-GUIDED FINE NEEDLE ASPIRATION CYTOLOGY VS FINE NEEDLE BIOPSY FOR THE DIAGNOSIS OF PANCREATIC NEUROENDOCRINE TUMOURS
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Eusebi, LH, additional, Thorburn, D, additional, Toumpanakis, C, additional, Frazzoni, L, additional, Johnson, G, additional, Vessal, S, additional, Caplin, M, additional, and Pereira, SP, additional
- Published
- 2019
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19. Genome-wide association study identifies inversion in the CTRB1-CTRB2 locus to modify risk for alcoholic and non-alcoholic chronic pancreatitis
- Author
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Rosendahl, J, Kirsten, H, Hegyi, E, Kovacs, P, Weiss, FU, Laumen, H, Lichtner, P, Ruffert, C, Chen, JM, Masson, E, Beer, S, Zimmer, C, Seltsam, K, Alguel, H, Buehler, F, Bruno, Marco, Bugert, P, Burkhardt, R, Cavestro, GM, Cichoz-Lach, H, Farre, A, Frank, J, Gambaro, G, Gimpfl, S, Grallert, H, Griesmann, H, Gruetzmann, R, Hellerbrand, C, Hegyi, P, Hollenbach, M, Iordache, S, Jurkowska, G, Keim, V, Kiefer, F, Krug, S, Landt, O, De Leo, M, Lerch, MM, Levy, P, Loeffler, M, Loehr, M, Ludwig, M, Macek, M, Malats, N, Malecka-Panas, E, Malerba, G, Mann, K, Mayerle, J, Mohr, S, te Morsche, RHM, Motyka, M, Mueller, S, Mueller, T, Noethen, MM, Pedrazzoli, S, Pereira, SP, Peters, A, Pfuetzer, R, Real, FX, Rebours, V, Ridinger, M, Rietschel, M, Roesmann, E, Saftoiu, A, Schneider, A, Schulz, HU, Soranzo, N, Soyka, M, Simon, P, Skipworth, J, Stickel, F, Strauch, K, Stumvoll, M, Testoni, PA, Toenjes, A, Werner, L, Werner, J, Wodarz, N, Ziegler, M, Masamune, A, Moessner, J, Ferec, C, Michl, P, Drenth, JPH, Witt, H, Scholz, M, Sahin-Toth, M, Rosendahl, J, Kirsten, H, Hegyi, E, Kovacs, P, Weiss, FU, Laumen, H, Lichtner, P, Ruffert, C, Chen, JM, Masson, E, Beer, S, Zimmer, C, Seltsam, K, Alguel, H, Buehler, F, Bruno, Marco, Bugert, P, Burkhardt, R, Cavestro, GM, Cichoz-Lach, H, Farre, A, Frank, J, Gambaro, G, Gimpfl, S, Grallert, H, Griesmann, H, Gruetzmann, R, Hellerbrand, C, Hegyi, P, Hollenbach, M, Iordache, S, Jurkowska, G, Keim, V, Kiefer, F, Krug, S, Landt, O, De Leo, M, Lerch, MM, Levy, P, Loeffler, M, Loehr, M, Ludwig, M, Macek, M, Malats, N, Malecka-Panas, E, Malerba, G, Mann, K, Mayerle, J, Mohr, S, te Morsche, RHM, Motyka, M, Mueller, S, Mueller, T, Noethen, MM, Pedrazzoli, S, Pereira, SP, Peters, A, Pfuetzer, R, Real, FX, Rebours, V, Ridinger, M, Rietschel, M, Roesmann, E, Saftoiu, A, Schneider, A, Schulz, HU, Soranzo, N, Soyka, M, Simon, P, Skipworth, J, Stickel, F, Strauch, K, Stumvoll, M, Testoni, PA, Toenjes, A, Werner, L, Werner, J, Wodarz, N, Ziegler, M, Masamune, A, Moessner, J, Ferec, C, Michl, P, Drenth, JPH, Witt, H, Scholz, M, and Sahin-Toth, M
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- 2018
20. PTH-036 Accuracy and safety of the 22g sharkcore needle for eus-fine needle biopsy: a case series
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Eusebi, LH, primary, Mogan, S, additional, Johnson, G, additional, Pereira, SP, additional, Vessal, S, additional, Perez-Machado, M, additional, and Thorburn, D, additional
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- 2017
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21. The effect of Transforming Growth Factor Beta family members on tumor initiating cells in primary liver cancer
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Pereira, SP, additional, Rodrigues, LZ, additional, Castven, D, additional, Dooley, S, additional, Meindl-Beinker, NMM, additional, Lang, H, additional, Grimminger, P, additional, Galle, PR, additional, and Marquardt, JU, additional
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- 2016
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22. OC-073 The First Multicentre Experience from The UK and Ireland of the Use of the Hot Axios System for Transluminal Drainage of Pancreatic Fluid Collections
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Venkatachalapathy, SV, primary, Makin, A, additional, Pereira, SP, additional, Johnson, GJ, additional, Bekkali, N, additional, Penman, I, additional, Oppong, KW, additional, Nayar, MK, additional, Carroll, NR, additional, Godfrey, EM, additional, Ryan, BM, additional, Parihar, V, additional, McKay, CJ, additional, and Huggett, MT, additional
- Published
- 2016
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23. R0 but not R1/R2 resection is associated with better survival than palliative photodynamic therapy in biliary tract cancer
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Matull, WR, Dhar, DK, Ayaru, L, Sandanayake, NS, Chapman, MH, Dias, A, Bridgewater, J, Webster, GJM, Bong, JJ, Davidson, BR, and Pereira, SP
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Adult ,Male ,Time Factors ,Kaplan-Meier Estimate ,Risk Assessment ,Article ,Cholangiocarcinoma ,Risk Factors ,London ,Humans ,Aged ,Proportional Hazards Models ,Retrospective Studies ,Aged, 80 and over ,Chi-Square Distribution ,Palliative Care ,Middle Aged ,Biliary Tract Surgical Procedures ,Bile Ducts, Intrahepatic ,Treatment Outcome ,Bile Duct Neoplasms ,Photochemotherapy ,Chemotherapy, Adjuvant ,Drainage ,Female ,Gallbladder Neoplasms ,Radiotherapy, Adjuvant - Abstract
There is a need for better management strategies to improve the survival and quality of life in patients with biliary tract cancer (BTC).To assess prognostic factors for survival in a large, non-selective cohort of patients with BTC.We compared outcomes in 321 patients with a final diagnosis of BTC (cholangiocarcinoma n = 237, gallbladder cancer n = 84) seen in a tertiary referral cancer centre between 1998 and 2007. Survival according to disease stage and treatment category was compared using log-rank testing. Cox's regression analysis was used to determine independent prognostic factors.Eighty-nine (28%) patients underwent a surgical intervention with curative intent, of whom 38% had R0 resections. Among the 321 patients, 34% were given chemo- and/or radiotherapy, 14% were palliated with photodynamic therapy (PDT) and 37% with biliary drainage procedures alone. The overall median survival was 9 months (3-year survival, 14%). R0-resective surgery conferred the most favourable outcome (3-year survival, 57%). Although patients palliated with PDT had more advanced clinical T-stages, their survival was similar to those treated with attempted curative surgery but who had positive resection margins. On multivariable analysis, treatment modality, serum carbohydrate-associated antigen 19-9, distant metastases and vascular involvement were independent prognostic indicators of survival.In this large UK series of BTC, palliative PDT resulted in survival similar to those with curatively intended R1/R2 resections. Surgery conferred a survival advantage only in patients with R0 resection margins, emphasising the need for accurate pre-operative staging.
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- 2010
24. PTH-003 Fully Covered Self Expanding Metals Stents Are Effective In Remodelling Benign Biliary Strictures In Patients With Chronic Pancreatitis
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Paranandi, B, primary, Joshi, D, additional, El-Sayed, GH, additional, Patel, P, additional, Chapman, MH, additional, Pereira, SP, additional, Webster, GJ, additional, and Johnson, GJ, additional
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- 2014
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25. PTH-121 The Burden Of Poor Nutrition In Chronic Pancreatitis: What Are The Impact Of Behavioural And Socioeconomic Factors?
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Paranandi, B, primary, Patel, PS, additional, El-Sayed, GH, additional, Joshi, D, additional, Ghai, A, additional, Koshy, K, additional, Chapman, MH, additional, Pereira, SP, additional, Webster, GJ, additional, and Johnson, GJ, additional
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- 2014
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26. PTH-004 Subjective Description Of Pain Does Not Predict Biliary Manometry Or Response To Endotherapy In Sphincter Of Oddi Dysfunction: Are The Rome Criteria Fit For Purpose?
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Paranandi, B, primary, Cheung, VTF, additional, Joshi, D, additional, El-Sayed, GH, additional, Johnson, GJ, additional, Pereira, SP, additional, Webster, GJ, additional, and Chapman, MH, additional
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- 2014
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27. Trial-based cost-effectiveness analysis comparing surgical and endoscopic drainage in patients with obstructive chronic pancreatitis
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Laramee, P, Wonderling, D, Cahen, Djuna, Dijkgraaf, MG, Gouma, DJ, Bruno, Marco, Pereira, SP, Laramee, P, Wonderling, D, Cahen, Djuna, Dijkgraaf, MG, Gouma, DJ, Bruno, Marco, and Pereira, SP
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Objective: Published evidence indicates that surgical drainage of the pancreatic duct was more effective than endoscopic drainage for patients with chronic pancreatitis. This analysis assessed the cost-effectiveness of surgical versus endoscopic drainage in obstructive chronic pancreatitis. Design: This trial-based cost-utility analysis (ISRCTN04572410) was conducted from a UK National Health Service (NHS) perspective and during a 79-month time horizon. During the trial the details of the diagnostic and therapeutic procedures, and pancreatic insufficiency were collected. The resource use was varied in the sensitivity analysis based on a review of the literature. The health outcome was the Quality-Adjusted Life Year (QALY), generated using EQ-5D data collected during the trial. There were no pancreas-related deaths in the trial. All-cause mortality from the trial was incorporated into the QALY estimates in the sensitivity analysis. Setting: Hospital. Participants: Patients with obstructive chronic pancreatitis. Primary and secondary outcome measures: Costs, QALYs and cost-effectiveness. Results: The result of the base-case analysis was that surgical drainage dominated endoscopic drainage, being both more effective and less costly. The sensitivity analysis varied mortality and resource use and showed that the surgical option remained dominant in all scenarios. The probability of cost-effectiveness for surgical drainage was 100% for the base case and 82% in the assessed most conservative case scenario. Conclusions: In obstructive chronic pancreatitis, surgical drainage is highly cost-effective compared with endoscopic drainage from a UK NHS perspective.
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- 2013
28. Chronic depolarization induced by veratridine increases the survival of rat retinal ganglion cells 'in vitro'
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Fernandes Pereira SP and Giestal de Araujo E
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During the last decades it has been shown that trophic molecules released by target, afferent and glial cells play a pivotal role controlling neuronal cell death. Trophic molecules are able to inhibit this regressive event during development as well as during degenerative diseases. One of the mechanisms involved in the control of neuronal survival by afferent cells requires the release of trophic molecules stimulated by electrical activity. It has been demonstrated that veratridine (a depolarizing agent that keeps the Na(+) channels opened) induces an increase in neuronal survival. In the present work we show that 3 µM veratridine induced a two-fold increase on the survival of retinal ganglion cells after 48 h in culture. The veratridine effect was inhibited by 50 µM amiloride (an inhibitor of Ca(2+) channels), 25 µM benzamil (an inhibitor of Na(+) channels), 30 µM dantrolene and 7.5 µM caffeine (both inhibitors of Ca(2+) release from the endoplasmatic reticulum) and 10 µM BAPTA-AM (an intracellular Ca(2+) chelator). However, 5 µM nifedipine (a selective inhibitor of voltage-dependent L-type Ca(2+) channels) and 100 µM MK 801 (an inhibitor of NMDA receptors) did not block the veratridine effect. On the other hand, treatment with 10 µM genistein (an inhibitor of tyrosine kinase enzymes), 20 µM fluorodeoxyuridine (an inhibitor of cell proliferation) or 10 µM atropine (an antagonist of muscarinic receptors) completely abolished the effect of veratridine. Taken together, our results indicate that veratridine increases the survival of rat retinal ganglion cells through mechanisms involving Na(+) influx, intracellular Ca(2+) release, activation of tyrosine kinase enzymes and cellular proliferation. They also indicate that cholinergic activity plays an important role in the veratridine effect.
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- 2001
29. Biliary Deoxycholic Acid (Dca) Influences the Partitioning of Biliary Cholesterol (Ch) between Micelles and Vesicles
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Hussaini, SH, primary, Pereira, SP, additional, Murphy, GM, additional, and Dowling, RH, additional
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- 1994
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30. Are the Molecular Species of Phosphatidylcholine (PC) Similar in Bile, Plasma and Red Blood Cell (RBC) Membranes?
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Pereira, SP, primary, Cassell, TB, additional, Hussaini, SH, additional, Murphy, GM, additional, and Dowling, RH, additional
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- 1994
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31. Is Biliary Phospholipid (Pl) Composition Altered in Cholesterol (Ch) Gallstone Disease?
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Pereira, SP, primary, Cassell, TB, additional, Hussaini, SH, additional, Murphy, GM, additional, and Dowling, RH, additional
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- 1993
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32. Photodynamic therapy of malignant biliary strictures using meso-tetrahydroxyphenylchlorin.
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Pereira SP, Ayaru L, Rogowska A, Mosse A, Hatfield AR, Bown SG, Pereira, Stephen P, Ayaru, Lakshmana, Rogowska, Agnieszka, Mosse, Alexander, Hatfield, Adrian R W, and Bown, Stephen G
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- 2007
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33. Liver transplantation for alcoholic liver disease at King's College Hospital: Survival and quality of life
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Pereira, SP and Williams, R
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- 1997
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34. Abdominal tuberculosis: the great mimic.
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Ahmed A, Pereira SP, Steger A, and Starke I
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- 2001
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35. PTH-036 Accuracy and safety of the 22g sharkcore needle for eus-fine needle biopsy: a case series
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Eusebi, LH, Mogan, S, Johnson, G, Pereira, SP, Vessal, S, Perez-Machado, M, and Thorburn, D
- Abstract
IntroductionAdequate tissue sampling for pathologic evaluation is one of the main challenges of endoscopic ultrasound (EUS) procedures. Novel needles for EUS fine needle biopsies (FNB) may improve tissue sampling. The distinctive tip geometry of the SharkCore needle (Medtronic, Dublin, Ireland) with six distal cutting edges has been designed to obtain consistent specimens without altering the tissue architecture. Our aim was to evaluate the diagnostic yield and safety of the Sharkcore needle for EUS-FNB.MethodWe reviewed prospectively collected data from patients undergoing EUS-FNB using a 22-gauge(G) SharkCore needle from two high volume tertiary centres in London. Demographics and clinical data, lesion characteristics, EUS technical aspects and histology results were collected for each patient.Based on histology reports, samples were classified as: diagnostic, suspicious or non-diagnostic. The proportion of diagnostic cases (regardless of being benign or malignant) was used to calculate the diagnostic yield. For all benign and suspicious/non-diagnostic cases, results of other diagnostic examinations and/or at least 4 months’ clinical follow-up were used to confirm the nature of the lesion.ResultsIn total 89 lesions were sampled using the SharkCore needles in 87 patients (Mean age 65 years; M/F: 47/40): 62 (69.7%) were pancreatic lesions, 10 (11.2%) lymph nodes, 8 (9%) submucosal lesions, and 9 (10.1%) other lesions. The average size of the lesions was 30.1 mm (range 8–110). A median of 2 passes were performed per lesion, ranging from 1 to 7. Six FNBs were performed from the oesophagus, 42 from the stomach, 23 from the bulb and 18 from the second portion of the duodenum.The overall histological diagnostic yield was 87.6% (78/89); 51 cases (65.4%) had a definitive diagnosis of malignancy, while 27 (34.6%) were benign. Considering lesion location, the histological yield was 87.1% (54/62) for pancreas, 100% (10/10) for lymph nodes, 75% (6/8) for submucosal lesions and 88.9% (8/9) for all other lesions. When only solid mass pancreatic lesions were considered, the diagnostic yield increased to 91.4% (32/35). No significant difference was found between the histological yields of malignancy (86.4%) compared to benign disease (90%).No major complications were recorded; one patient experienced acute post-procedural abdominal pain and in one patient a minor bleeding was observed after the FNB, both resolved conservatively and patients were discharged within 6 hours from the procedure.ConclusionThe 22G SharkCore needle for FNB, with a minimum number of required passes and excellent safety profile, achieved high histological diagnostic yield, in particular (>90%) for solid pancreatic mass lesions and lymph nodes.Disclosure of InterestNone Declared
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- 2017
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36. Intestinal absorption of mixed micellar phylloquinone (vitamin K1) is unreliable in infants with conjugated hyperbilirubinaemia: implications for oral prophylaxis of vitamin K deficiency bleeding.
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Pereira SP, Shearer MJ, Williams R, Mieli-Vergani G, Pereira, S P, Shearer, M J, Williams, R, and Mieli-Vergani, G
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Objective: To compare the pharmacokinetics and efficacy of oral versus intravenous mixed micellar vitamin K prophylaxis in infants with cholestatic liver disease, a known risk factor for vitamin K deficiency bleeding.Design: Prospective randomised controlled study.Setting: Paediatric Liver Unit.Patients: Forty four infants less than 6 months of age with conjugated hyperbilirubinaemia.Main Outcome Measures: Serum concentrations of vitamin K(1) and undercarboxylated prothrombin (PIVKA-II; a sensitive functional indicator of vitamin K status) before and for up to four days after a single dose of mixed micellar K(1) 1 mg intravenously or 2 mg orally. Comparison of K(1) levels 24 hours after oral K(1) with those from 14 healthy newborns given the same dose.Results: At admission, 18 infants (41%) had elevated levels of serum PIVKA-II and eight (18%) had low K(1) concentrations, indicative of subclinical vitamin K deficiency. Median serum K(1) concentrations were similar in the oral and intravenous groups at baseline (0.92 v 1.15 ng/ml), rising to 139 ng/ml six hours after intravenous K(1) but to only 1.4 ng/ml after oral administration. In the latter group, the low median value (0.95 ng/ml) and wide range (< 0.15-111 ng/ml) of serum K(1) compared unfavourably with the much higher levels (median 77, range 11-263 ng/ml) observed in healthy infants given the same oral dose, and suggested impaired and erratic intestinal absorption in cholestatic infants. The severity of malabsorption was such that only 4/24 (17%) achieved an incremental rise in serum K(1) > 10 ng/ml.Conclusions: The intestinal absorption of mixed micellar K(1) is unreliable in infants with conjugated hyperbilirubinaemia. Given the strong association between cholestasis and late vitamin K deficiency bleeding, these data provide an explanation for the failure of some oral vitamin K(1) prophylaxis regimens in infants with latent cholestasis. [ABSTRACT FROM AUTHOR]- Published
- 2003
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37. Serous cystic neoplasm of the pancreas: a multinational study of 2622 patients under the auspices of the International Association of Pancreatology and European Pancreatic Club (European Study Group on Cystic Tumors of the Pancreas)
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Luca Frulloni, I Gomatos, O Messina, Raghubinder S. Gill, Paolo Giorgio Arcidiacono, Vinicius Jardim Campos, Myriam Delhaye, W J Lee, Roberto Girelli, J M Urman Fernandez, Isabella Frigerio, Massimiliano Bissolati, Wataru Kimura, M Concepcion-Martin, T Ikeura, Jong Ho Moon, J Y Jang, Alessandro Bersch Osvaldt, Darwin L. Conwell, Riccardo Manfredi, Claudio Bassi, Maria Rachele Angiolini, Bertrand Napoleon, M Del Chiaro, B Jais, Riccardo Casadei, L S Lee, Atif Zaheer, Woohyun Jung, Ralph H. Hruban, F Bolado, D Oh, Ralf Segersvärd, Martina Fontana, Laura Maggino, Eva C. Vaquero, B Sastre, M A Rios-Vives, S Y Song, Rupert W. Leong, Anna Caterina Milanetto, Stephen P. Pereira, Margaret G. Keane, Giuseppe Malleo, Kazuichi Okazaki, Anne Marie Lennon, D H Song, I Araujo Acuna, Robert A. Moran, G Aguero Garcete, Hua Wang, Philippe Lévy, Stefano Crippa, Kofi Oppong, Giovanni Marchegiani, Vinciane Rebours, Myung-Hwan Kim, K V Kopchak, Darren Pavey, Chang Moo Kang, Matthew T. Huggett, Roberto Salvia, Claudio Ricci, Giovanni Morana, B Bernier, Alessandro Zerbi, C. De Angelis, Christopher L. Wolfgang, C. Fernandez del Castillo, M Shinzeki, Cosimo Sperti, Alex Faccinetto, Gianpaolo Balzano, Ichiro Hirai, Mehdi Ouaissi, Massimo Falconi, Y Ha, M Spandre, K T Jang, William R. Brugge, John P. Neoptolemos, M C Petrone, H J Choi, Huapyong Kang, I Matsumoto, J Tang, S W Kim, L Pererva, Jais, B, Rebours, V, Malleo, G, Salvia, R, Fontana, M, Maggino, L, Bassi, C, Manfredi, R, Moran, R, Lennon, A M, Zaheer, A, Wolfgang, C, Hruban, R, Marchegiani, G, Fernández Del Castillo, C, Brugge, W, Ha, Y, Kim, M H, Oh, D, Hirai, I, Kimura, W, Jang, J Y, Kim, S W, Jung, W, Kang, H, Song, S Y, Kang, C M, Lee, W J, Crippa, S, Falconi, M, Gomatos, I, Neoptolemos, J, Milanetto, A C, Sperti, C, Ricci, C, Casadei, R, Bissolati, M, Balzano, G, Frigerio, I, Girelli, R, Delhaye, M, Bernier, B, Wang, H, Jang, K T, Song, D H, Huggett, M T, Oppong, K W, Pererva, L, Kopchak, K V, Del Chiaro, M, Segersvard, R, Lee, L S, Conwell, D, Osvaldt, A, Campos, V, Aguero Garcete, G, Napoleon, B, Matsumoto, I, Shinzeki, M, Bolado, F, Fernandez, J M Urman, Keane, M G, Pereira, S P, Acuna, I Araujo, Vaquero, E C, Angiolini, M R, Zerbi, A, Tang, J, Leong, R W, Faccinetto, A, Morana, G, Petrone, M C, Arcidiacono, P G, Moon, J H, Choi, H J, Gill, R S, Pavey, D, Ouaïssi, M, Sastre, B, Spandre, M, De Angelis, C G, Rios-Vives, M A, Concepcion-Martin, M, Ikeura, T, Okazaki, K, Frulloni, L, Messina, O, Lévy, P, Lennon, Am, Kim, Mh, Jang, Jy, Kim, Sw, Song, Sy, Kang, Cm, Lee, Wj, Milanetto, Ac, Jang, Kt, Song, Dh, Huggett, Mt, Oppong, Kw, Kopchak, Kv, Lee, L, Fernandez, Jm, Keane, Mg, Pereira, Sp, Acuna, Ia, Vaquero, Ec, Angiolini, Mr, Leong, Rw, Petrone, Mc, Arcidiacono, P. G., Moon, Jh, Choi, Hj, Gill, R, De Angelis, Cg, Rios-Vives, Ma, and Lévy, P.
- Subjects
Male ,Abdominal pain ,Internationality ,PANCREATIC SURGERY ,PANCREATIC TUMOURS ,Cystadenoma ,Gastroenterology ,0302 clinical medicine ,80 and over ,Medicine ,Societies, Medical ,Settore MED/36 - DIAGNOSTICA PER IMMAGINI E RADIOTERAPIA ,Aged, 80 and over ,Cystadenoma, Serous ,Middle Aged ,Europe ,Serous fluid ,030220 oncology & carcinogenesis ,030211 gastroenterology & hepatology ,Female ,medicine.symptom ,hormones, hormone substitutes, and hormone antagonists ,Adult ,medicine.medical_specialty ,endocrine system ,Adolescent ,Pancreatic serous cystadenoma ,Malignancy ,Asymptomatic ,Aged ,Humans ,Retrospective Studies ,Young Adult ,Pancreatic Neoplasms ,03 medical and health sciences ,Internal medicine ,Medical ,business.industry ,Serous ,Retrospective cohort study ,medicine.disease ,Cystic Neoplasm ,Surgery ,stomatognathic diseases ,nervous system ,sense organs ,business ,Societies - Abstract
Objectives Serous cystic neoplasm (SCN) is a cystic neoplasm of the pancreas whose natural history is poorly known. The purpose of the study was to attempt to describe the natural history of SCN, including the specific mortality. Design Retrospective multinational study including SCN diagnosed between 1990 and 2014. Results 2622 patients were included. Seventy-four per cent were women, and median age at diagnosis was 58 years (16–99). Patients presented with non-specific abdominal pain (27%), pancreaticobiliary symptoms (9%), diabetes mellitus (5%), other symptoms (4%) and/or were asymptomatic (61%). Fifty-two per cent of patients were operated on during the first year after diagnosis (median size: 40 mm (2–200)), 9% had resection beyond 1 year of follow-up (3 years (1–20), size at diagnosis: 25 mm (4–140)) and 39% had no surgery (3.6 years (1–23), 25.5 mm (1–200)). Surgical indications were (not exclusive) uncertain diagnosis (60%), symptoms (23%), size increase (12%), large size (6%) and adjacent organ compression (5%). In patients followed beyond 1 year (n=1271), size increased in 37% (growth rate: 4 mm/year), was stable in 57% and decreased in 6%. Three serous cystadenocarcinomas were recorded. Postoperative mortality was 0.6% (n=10), and SCN9s related mortality was 0.1% (n=1). Conclusions After a 3-year follow-up, clinical relevant symptoms occurred in a very small proportion of patients and size slowly increased in less than half. Surgical treatment should be proposed only for diagnosis remaining uncertain after complete workup, significant and related symptoms or exceptionally when exists concern with malignancy. This study supports an initial conservative management in the majority of patients with SCN. Trial registration number IRB 00006477.
- Published
- 2016
38. The world through tinted glasses.
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Bennett DLH, Webster GJM, Molyneux P, Descamps MJL, Plant GT, Pereira SP, and Reilly MM
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- 2004
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39. Maternal heart exhibits metabolic and redox adaptations post-uncomplicated pregnancy.
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Tocantins C, Martins JD, Rodrigues ÓM, Grilo LF, Diniz MS, Stevanovic-Silva J, Beleza J, Coxito P, Rizo-Roca D, Santos-Alves E, Moreno AJ, Ascensão A, Magalhães J, Oliveira PJ, and Pereira SP
- Abstract
Pregnancy may be a challenging period for the maternal systems and has been regarded as a stress test, as imperceptible/mild dysfunctions eventually present may be exacerbated during this period. The cardiovascular system is no exception, and several morphological and functional adaptations accompanying pregnancy have been described. However, long-term pregnancy-induced cardiac molecular alterations remain highly unexplored. The postpartum is marked by reverse remodeling of the pregnancy-induced cardiovascular adaptations, representing a possible critical period for assessing future maternal cardiovascular health. The current study explored the molecular and metabolic alterations in the cardiac tissue eight weeks after a physiological uncomplicated pregnancy. Female Sprague-Dawley rats were fed a chow diet through pregnancy, lactation, and weaning and compared to their non-pregnant counterparts. Eight weeks postpartum, increased levels of the phosphorylated form of AMPKα (Thr172) and its ratio to total AMPKα indicated possible alterations in cardiac metabolic flexibility, accompanied by increased Pparα and Hif1α transcripts levels. Additionally, postpartum hearts exhibited higher mitochondrial ATP and NADH levels without major changes in mitochondrial respiratory function. Elevated Nrf2 levels in the cardiac tissue suggested potential implications for cardiac redox balance, further supported by increased levels or activity of proteins directly regulated by Nrf2. The findings herein reported suggest that at eight weeks postpartum, molecular alterations induced by pregnancy, especially regarding redox balance, are still observed in the mothers' heart. These alterations present at late postpartum may open new avenues to understand the different risk for cardiovascular complications development after normal pregnancies., Competing Interests: Declaration of competing interest The authors declare the following financial interests/personal relationships which may be considered as potential competing interests: Paulo J. Oliveira reports financial support was provided by European Commission. If there are other authors, they declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024. Published by Elsevier B.V.)
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- 2024
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40. Competing for Pixels: A Self-play Algorithm for Weakly-supervised Semantic Segmentation.
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Saeed SU, Huang S, Ramalhinho J, Gayo IJMB, Montana-Brown N, Bonmati E, Pereira SP, Davidson B, Barratt DC, Clarkson MJ, and Hu Y
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Weakly-supervised semantic segmentation (WSSS) methods, reliant on image-level labels indicating object presence, lack explicit correspondence between labels and regions of interest (ROIs), posing a significant challenge. Despite this, WSSS methods have attracted attention due to their much lower annotation costs compared to fully-supervised segmentation. Leveraging reinforcement learning (RL) self-play, we propose a novel WSSS method that gamifies image segmentation of a ROI. We formulate segmentation as a competition between two agents that compete to select ROI-containing patches until exhaustion of all such patches. The score at each time-step, used to compute the reward for agent training, represents likelihood of object presence within the selection, determined by an object presence detector pre-trained using only image-level binary classification labels of object presence. Additionally, we propose a game termination condition that can be called by either side upon exhaustion of all ROI-containing patches, followed by the selection of a final patch from each. Upon termination, the agent is incentivised if ROI-containing patches are exhausted or disincentivised if a ROI-containing patch is found by the competitor. This competitive setup ensures minimisation of over- or under-segmentation, a common problem with WSSS methods. Extensive experimentation across four datasets demonstrates significant performance improvements over recent state-of-the-art methods. Code: https://github.com/s-sd/spurl/tree/main/wss.
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- 2024
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41. Health Literacy and Adherence to Therapy in Type 2 Diabetes: A Cross-Sectional Study in Portugal.
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Rodrigues S, Isabel Patrício A, Cristina C, Fernandes F, Marcelino Santos G, Antunes I, Pintalhão I, Ribeiro M, Lopes R, Moreira S, Oliveira SA, Costa SP, Simões S, Nunes TC, Santiago LM, and Rosendo I
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- Humans, Female, Cross-Sectional Studies, Male, Portugal, Middle Aged, Aged, Surveys and Questionnaires, Glycated Hemoglobin analysis, Medication Adherence statistics & numerical data, Medication Adherence psychology, Diabetes Mellitus, Type 2 therapy, Diabetes Mellitus, Type 2 drug therapy, Health Literacy statistics & numerical data, Health Literacy standards, Self Care methods, Self Care statistics & numerical data, Self Care psychology
- Abstract
Background: Therapy adherence is a key factor in the control of type 2 diabetes mellitus (T2DM). Optimal self-care requires skills in health literacy (HL)., Objective: This study aims to analyze the relationship between HL and adherence to therapy and to understand the possible influence of other sociodemographic and disease variables., Methods: A multicenter, cross-sectional study was conducted in Portuguese in 13 different primary health care units in both rural and urban environments. A sociodemographic questionnaire and two validated instruments, "Medical Term Recognition Test" and "Summary of Diabetes Self-Care Activities," were applied. The last value of hemoglobin A1c (HbA1c) and the number of chronic medications were collected from clinical records. Descriptive statistics and bivariate correlations were performed as well as multivariable linear regression to assess the association between HL and adherence to therapy., Key Results: Participants (n = 354) were on average age 63.67 ± 10.39 years, 57.1% male and 42.9% female, 68.4% with inadequate HL and an average HbA1c of 7 ± 1.18%. Better HL was correlated with higher adherence to the total of self-care activities, nonpharmacological therapy, and foot care. In multivariable linear regression analyses, better HL ( β = 0.176, p = .003), less than minimum wage (β = -0.197, p = .001) and insulin therapy ( β = 0.272, p = .001) were independently associated with increased adherence to overall self-care activities., Conclusion: In a representative sample of people with T2DM in Portugal, HL was a key factor for greater adherence to demanding self-care activities. [ HLRP: Health Literacy Research and Practice . 2024;8(4):e194-e203. ].
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- 2024
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42. Cardiac Molecular Analysis Reveals Aging-Associated Metabolic Alterations Promoting Glycosaminoglycans Accumulation via Hexosamine Biosynthetic Pathway.
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Grilo LF, Zimmerman KD, Puppala S, Chan J, Huber HF, Li G, Jadhav AYL, Wang B, Li C, Clarke GD, Register TC, Oliveira PJ, Nathanielsz PW, Olivier M, Pereira SP, and Cox LA
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- Animals, Female, Papio genetics, Myocardium metabolism, Hexosamines metabolism, Hexosamines biosynthesis, Aging metabolism, Aging genetics, Glycosaminoglycans metabolism, Glycosaminoglycans genetics, Biosynthetic Pathways genetics
- Abstract
Age is a prominent risk factor for cardiometabolic disease, often leading to heart structural and functional changes. However, precise molecular mechanisms underlying cardiac remodeling and dysfunction exclusively resulting from physiological aging remain elusive. Previous research demonstrated age-related functional alterations in baboons, analogous to humans. The goal of this study is to identify early cardiac molecular alterations preceding functional adaptations, shedding light on the regulation of age-associated changes. Unbiased transcriptomics of left ventricle samples are performed from female baboons aged 7.5-22.1 years (human equivalent ≈30-88 years). Weighted-gene correlation network and pathway enrichment analyses are performed, with histological validation. Modules of transcripts negatively correlated with age implicated declined metabolism-oxidative phosphorylation, tricarboxylic acid cycle, glycolysis, and fatty-acid β-oxidation. Transcripts positively correlated with age suggested a metabolic shift toward glucose-dependent anabolic pathways, including hexosamine biosynthetic pathway (HBP). This shift is associated with increased glycosaminoglycan synthesis, modification, precursor synthesis via HBP, and extracellular matrix accumulation, verified histologically. Upregulated extracellular matrix-induced signaling coincided with glycosaminoglycan accumulation, followed by cardiac hypertrophy-related pathways. Overall, these findings revealed a transcriptional shift in metabolism favoring glycosaminoglycan accumulation through HBP before cardiac hypertrophy. Unveiling this metabolic shift provides potential targets for age-related cardiac diseases, offering novel insights into early age-related mechanisms., (© 2024 The Author(s). Advanced Science published by Wiley‐VCH GmbH.)
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- 2024
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43. Enhancing methodological rigor in meta-analyses assessing suicidal risk in mood disorders.
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Nogueira GN, Gomes SP, de Souza Júnior SA, de Matos E Souza FG, and Bisol LW
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- 2024
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44. Navigating the challenge of patient selection and scales to measure outcomes in ketamine trials for treatment-resistant depression.
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Gomes SP, Lima SR, Souza FGM, and Bisol LW
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The letter about the article "Ketamine for treatment-resistant major depressive disorder: Double-blind active-controlled crossover study" that discusses some points about methodology, outcome measures, and results., Competing Interests: Declaration of conflicting interestsThe author(s) declared no potential conflicts of interest with respect to the research, authorship, and/or publication of this article.
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- 2024
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45. Evaluation of urinary C-reactive protein as an early detection biomarker for pancreatic ductal adenocarcinoma.
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Ali N, Debernardi S, Kurotova E, Tajbakhsh J, Gupta NK, Pandol SJ, Wilson P, Pereira SP, Greenhalf B, Blyuss O, and Crnogorac-Jurcevic T
- Abstract
Pancreatic ductal adenocarcinoma (PDAC) is one of the leading causes of cancer-related death worldwide. Up to now, no specific screening or diagnostic tests are available for early PDAC detection. As a result, most patients are diagnosed with advanced or metastatic disease, which leads to a poor prognosis. In this study, we aimed to evaluate the diagnostic value of urinary CRP (uCRP) alone and in combination with our previously established urine biomarker panel (REG1B, LYVE1 and TFF1) for early detection of PDAC. A total of 534 urine samples from multiple centres were analysed: 93 from healthy individuals, 265 from patients with benign hepatobiliary diseases and 176 from PDAC patients. The uCRP and the urinary biomarker panel were assessed using commercial ELISA assays, while plasma CA19-9 and blood CRP (bCRP) were measured using Roche Cobas platform. Multiple logistic regression and nonparametric Kruskal-Wallis test were used for statistical analysis. An internal validation approach was applied, and the validated AUC estimators were reported to ensure accuracy. A significant difference was observed in the medians of uCRP between healthy and benign controls and PDAC sample groups (p < 0.001). uCRP levels were not dependent on gender and age, as well as cancer stage. When uCRP was combined with the urinary biomarker panel, it achieved AUCs of 0.878 (95% CI: 0.802-0.931), 0.798 (95% CI: 0.738-0.859) and 0.813 (95% CI: 0.758-0.869) in healthy vs PDAC, benign vs PDAC and healthy and benign vs PDAC sample groups, respectively. However, adding plasma CA19-9 to the urinary biomarker panel yielded a better performance, with AUCs of 0.978 (95% CI: 0.959-0.996), 0.911 (95% CI: 0.873-0.949) and 0.919 (95% CI: 0.883-0.955) in the healthy vs PDAC, benign vs PDAC and healthy and benign vs PDAC comparisons, respectively. In conclusion, we show that measuring CRP in urine is a feasible analytical method, and that uCRP could potentially be a promising biomarker in various diseases including other cancer types., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest., (Copyright © 2024 Ali, Debernardi, Kurotova, Tajbakhsh, Gupta, Pandol, Wilson, Pereira, Greenhalf, Blyuss and Crnogorac-Jurcevic.)
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- 2024
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46. Identification of a serum proteomic biomarker panel using diagnosis specific ensemble learning and symptoms for early pancreatic cancer detection.
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Ney A, Nené NR, Sedlak E, Acedo P, Blyuss O, Whitwell HJ, Costello E, Gentry-Maharaj A, Williams NR, Menon U, Fusai GK, Zaikin A, and Pereira SP
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- Humans, Female, Middle Aged, Male, Aged, Carcinoma, Pancreatic Ductal blood, Carcinoma, Pancreatic Ductal diagnosis, Machine Learning, Computational Biology methods, Pancreatic Neoplasms blood, Pancreatic Neoplasms diagnosis, Biomarkers, Tumor blood, Early Detection of Cancer methods, Proteomics methods
- Abstract
Background: The grim (<10% 5-year) survival rates for pancreatic ductal adenocarcinoma (PDAC) are attributed to its complex intrinsic biology and most often late-stage detection. The overlap of symptoms with benign gastrointestinal conditions in early stage further complicates timely detection. The suboptimal diagnostic performance of carbohydrate antigen (CA) 19-9 and elevation in benign hyperbilirubinaemia undermine its reliability, leaving a notable absence of accurate diagnostic biomarkers. Using a selected patient cohort with benign pancreatic and biliary tract conditions we aimed to develop a data analysis protocol leading to a biomarker signature capable of distinguishing patients with non-specific yet concerning clinical presentations, from those with PDAC., Methods: 539 patient serum samples collected under the Accelerated Diagnosis of neuro Endocrine and Pancreatic TumourS (ADEPTS) study (benign disease controls and PDACs) and the UK Collaborative Trial of Ovarian Cancer Screening (UKCTOCS, healthy controls) were screened using the Olink Oncology II panel, supplemented with five in-house markers. 16 specialized base-learner classifiers were stacked to select and enhance biomarker performances and robustness in blinded samples. Each base-learner was constructed through cross-validation and recursive feature elimination in a discovery set comprising approximately two thirds of the ADEPTS and UKCTOCS samples and contrasted specific diagnosis with PDAC., Results: The signature which was developed using diagnosis-specific ensemble learning demonstrated predictive capabilities outperforming CA19-9, the only biomarker currently accepted by the FDA and the National Comprehensive Cancer Network guidelines for pancreatic cancer, and other individual biomarkers and combinations in both discovery and held-out validation sets. An AUC of 0.98 (95% CI 0.98-0.99) and sensitivity of 0.99 (95% CI 0.98-1) at 90% specificity was achieved with the ensemble method, which was significantly larger than the AUC of 0.79 (95% CI 0.66-0.91) and sensitivity 0.67 (95% CI 0.50-0.83), also at 90% specificity, for CA19-9, in the discovery set (p = 0.0016 and p = 0.00050, respectively). During ensemble signature validation in the held-out set, an AUC of 0.95 (95% CI 0.91-0.99), sensitivity 0.86 (95% CI 0.68-1), was attained compared to an AUC of 0.80 (95% CI 0.66-0.93), sensitivity 0.65 (95% CI 0.48-0.56) at 90% specificity for CA19-9 alone (p = 0.0082 and p = 0.024, respectively). When validated only on the benign disease controls and PDACs collected from ADEPTS, the diagnostic-specific signature achieved an AUC of 0.96 (95% CI 0.92-0.99), sensitivity 0.82 (95% CI 0.64-0.95) at 90% specificity, which was still significantly higher than the performance for CA19-9 taken as a single predictor, AUC of 0.79 (95% CI 0.64-0.93) and sensitivity of 0.18 (95% CI 0.03-0.69) (p = 0.013 and p = 0.0055, respectively)., Conclusion: Our ensemble modelling technique outperformed CA19-9, individual biomarkers and indices developed with prevailing algorithms in distinguishing patients with non-specific but concerning symptoms from those with PDAC, with implications for improving its early detection in individuals at risk., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: UM reports stock ownership in Abcodia UK between 2011 and 2021; UM has received grants from the Medical Research Council (MRC), Cancer Research UK, the National Institute for Health Research (NIHR), the India Alliance, NIHR Biomedical Research Centre at University College London Hospital, and The Eve Appeal; UM currently has research collaborations with iLOF, RNA Guardian and Micronoma, with funding paid to UCL; UM holds patent number EP10178345.4 for Breast Cancer Diagnostics; AG currently has research collaborations with Micronoma and iLoF, with the research funding awarded to UCL. The other authors have declared that no competing interests exist., (Copyright: © 2024 Ney et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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47. Adipose tissue-liver cross-talk: a route to hepatic dysfunction in pregnant women with obesity.
- Author
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Sousa D, Magalhães CC, Matafome P, and Pereira SP
- Subjects
- Humans, Female, Pregnancy, Lipid Metabolism, Non-alcoholic Fatty Liver Disease metabolism, Non-alcoholic Fatty Liver Disease pathology, Insulin Resistance, Lipogenesis, Liver metabolism, Liver pathology, Obesity metabolism, Obesity pathology, Adipose Tissue metabolism, Adipose Tissue pathology, Pregnancy Complications metabolism
- Abstract
Obesity during pregnancy has been escalating, becoming a huge problem that poses consequences not only for the health of the offspring but also for the maternal well-being. Women's adipose and hepatic tissue metabolism undergoes significant changes during the gestational period. During pregnancy, obesity is a primary instigator of steatosis, increasing the risk of non-alcholic fatty liver disease (NAFLD), now recognized under the updated nomenclature metabolic dysfunction-associated steatotic liver disease (MASLD). Pregnant women with obesity present higher levels of free fatty acids and glucose, reduction in insulin sensitivity, and adipose tissue endocrine dysregulation. Furthermore, obesity-induced modifications in clock genes and lipid-associated gene expression within adipose tissue disrupt crucial metabolic adaptations, potentially culminating in adipose tissue dysfunction. Thus, the liver experiences increased exposure to free fatty acids through the portal vein. Higher uptake of free fatty acids into the liver disrupts hepatic lipid oxidation while enhances lipogenesis, thereby predisposing to ectopic fat deposition within the liver. This review focuses on the obesity-induced changes during pregnancy in both liver and adipose tissue metabolism, elucidating how the metabolic crosstalk between these two organs can be dysregulated in pregnant women living with obesity., (© 2024 The Author(s).)
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- 2024
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48. Guidelines Development Group for the British Society of Gastroenterology guidelines for the diagnosis and management of cholangiocarcinoma.
- Author
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Khan SA, Rushbrook SM, Kendall TJ, Zen Y, Albazaz R, Manoharan P, Pereira SP, Sturgess R, Davidson BR, Malik HZ, Manas D, Heaton N, Prasad KR, Valle JW, Goody R, Hawkins M, Prentice W, Morement H, Walmsley M, and Bridgewater J
- Abstract
Competing Interests: Competing interests: None declared.
- Published
- 2024
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49. Gouregine, an α -Gem-Dimethyltetradehydrocularine Alkaloid, and Other Aporphinoid Alkaloids from the Bark of Guatteria olivacea (Annonaceae) and Their In Vitro Cytotoxic Activities.
- Author
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Costa EV, Freitas JGC, Manickchand SP, Araújo MS, Silva VR, Santos LS, Koolen HHF, Silva FMAD, Soares MBP, and Bezerra DP
- Subjects
- Humans, Cell Line, Tumor, Guatteria chemistry, Antineoplastic Agents, Phytogenic pharmacology, Antineoplastic Agents, Phytogenic chemistry, Plant Extracts chemistry, Plant Extracts pharmacology, Cell Survival drug effects, Molecular Structure, Plant Bark chemistry, Aporphines pharmacology, Aporphines chemistry, Aporphines isolation & purification, Alkaloids chemistry, Alkaloids pharmacology, Alkaloids isolation & purification
- Abstract
Guatteria olivacea R.E. Fries is an Amazonian species known as 'envira-bobó' and 'envira-fofa' and is common in the states of Amazonas, Acre, and Pará. Recently, the essential oil from the leaves of this species has shown promising antitumor activity both in vitro and in vivo. The presence of isoquinoline-derived alkaloids, including aporphinoids and tetrahydroprotoberberine alkaloids, has also been previously reported. In our ongoing search for bioactive compounds from Annonaceae Amazonian plants, the bark of G. olivacea was investigated via classical chromatography techniques, which revealed nine compounds, eight isoquinoline-derived alkaloids, a rare alkaloid with a α -gem-dimethyltetradehydrocularine structure known as gouregine, seven known aporphinoid alkaloids: isopiline, O -methylisopiline, melosmine, 9-hydroxyiguattescine, dihydromelosmine, lysicamine, and guattouregidine, and one known pimaradiene diterpene: acanthoic acid. All the isolated compounds were described for the first time in the bark of G. olivacea, and their structures were elucidated by extensive analyses of their 1D and 2D NMR spectra in combination with MS data. The NMR data of the alkaloids isopiline, O -methylisopiline, melosmine, dihydromelosmine, and guattouregidine were revised due to incomplete data in the literature and some ambiguities. The in vitro cytotoxic activities of the isolated compounds were evaluated against human cancer (HepG2, KG-1a, and HCT116) and noncancerous (MRC-5) cell lines via the Alamar blue assay after 72 h of incubation. Among the compounds evaluated against human cancer cell lines, the most active was the oxoaporphine alkaloid lysicamine, which has strong activity against HCT116 cells, with an IC
50 value of 6.64 µg/mL (22.79 µmol/L). Melosmine had a moderate effect on HCT116 cells, with an IC50 value of 16.77 µg/mL (49.70 µmol/L), whereas acanthoic acid had moderate effects on HepG2 and HCT116 cells, with IC50 values of 14.63 µg/mL (48.37 µmol/L) and 21.25 µg/mL (70.25 µmol/L), respectively.- Published
- 2024
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50. Exploring substance use in first episode psychoses, what can we do more?
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Nogueira GN, Andrade AGM, Guimarães APC, Gomes SP, Ferreira TC, de Matos E Souza FG, and Bisol LW
- Subjects
- Humans, Schizophrenia, Adult, Psychotic Disorders, Substance-Related Disorders epidemiology
- Abstract
Competing Interests: Declaration of competing interest All authors declare have not conflicts of interest.
- Published
- 2024
- Full Text
- View/download PDF
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