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Loss‐of‐function CHD2(chromodomain helicase DNA‐binding protein 2) mutations are associated with a spectrum of neurodevelopmental disorders often including early‐onset generalized seizures, photosensitivity, and epileptic encephalopathies. Patients show psychomotor delay/intellectual disability (ID), autistic features, and behavior disorders, such as aggression and impulsivity. Most reported cases are sporadic with description of germline mosaicism only in two families. We detect the first case of parental gonosomal CHD2mosaicism disclosed by two brothers showing mild ID, born to healthy parents. The eldest brother has a history of drug‐controlled generalized tonic–clonic seizures and displays sleep disorder and aggressive behavior suggestive of Smith–Magenis syndrome (SMS). Analysis of brothers’ DNAs by next‐generation sequencing (NGS) custom gene panel for pediatric epilepsy and/or ID disclosed in both the same pathogenic CHD2variant. Additional NGS experiment on genomic DNA from parents’ peripheral blood and from buccal swab raised the suspicion of low‐grade gonosomal mosaicism in the unaffected mother subsequently confirmed by digital polymerase chain reaction (dPCR). This report underlines as worthwhile CHD2screening in individuals presenting ID/developmental delay, with/without epilepsy, and behavior and sleep disorders suggestive of SMS. Detecting a CHD2variant should prime testing probands' parents by NGS coupled to dPCR on different tissues to exclude/confirm gonosomal mosaicism and define the recurrence risk.