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Magnetic resonance imaging (MRI) is widely employed for diagnostic tests in neurology. However, the utility of MRI is largely limited by its long acquisition time. Acquiring fewer k-space data in a sparse manner is a potential solution to reducing the acquisition time, but it can lead to severe aliasing reconstruction artifacts. In this paper, we present a novel Dual-Domain Cross-Iteration Squeeze and Excitation Network (DD-CISENet) for accelerated sparse MRI reconstruction. The information of k-spaces and MRI images can be iteratively fused and maintained using the Cross-Iteration Residual connection (CIR) structures. This study included 720 multi-coil brain MRI cases adopted from the open-source fastMRI Dataset. Results showed that the average reconstruction error by DD-CISENet was 2.28 $\pm$ 0.57%, which outperformed existing deep learning methods including image-domain prediction (6.03 $\pm$ 1.31, p < 0.001), k-space synthesis (6.12 $\pm$ 1.66, p < 0.001), and dual-domain feature fusion approaches (4.05 $\pm$ 0.88, p < 0.001)., Comment: Accepted at MIDL 2023

Magnetic resonance imaging (MRI) is one of the most commonly applied tests in neurology and neurosurgery. However, the utility of MRI is largely limited by its long acquisition time, which might induce many problems including patient discomfort and motion artifacts. Acquiring fewer k-space sampling is a potential solution to reducing the total scanning time. However, it can lead to severe aliasing reconstruction artifacts and thus affect the clinical diagnosis. Nowadays, deep learning has provided new insights into the sparse reconstruction of MRI. In this paper, we present a new approach to this problem that iteratively fuses the information of k-space and MRI images using novel dual Squeeze-Excitation Networks and Cross-Iteration Residual Connections. This study included 720 clinical multi-coil brain MRI cases adopted from the open-source deidentified fastMRI Dataset. 8-folder downsampling rate was applied to generate the sparse k-space. Results showed that the average reconstruction error over 120 testing cases by our proposed method was 2.28%, which outperformed the existing image-domain prediction (6.03%, p<0.001), k-space synthesis (6.12%, p<0.001), and dual-domain feature fusion (4.05%, p<0.001)., Comment: 4 pages, 5 figures, 2 tables

3D segmentation with deep learning if trained with full resolution is the ideal way of achieving the best accuracy. Unlike in 2D, 3D segmentation generally does not have sparse outliers, prevents leakage to surrounding soft tissues, at the very least it is generally more consistent than 2D segmentation. However, GPU memory is generally the bottleneck for such an application. Thus, most of the 3D segmentation applications handle sub-sampled input instead of full resolution, which comes with the cost of losing precision at the boundary. In order to maintain precision at the boundary and prevent sparse outliers and leakage, we designed ComboNet. ComboNet is designed in an end to end fashion with three sub-network structures. The first two are parallel: 2D UNet with full resolution and 3D UNet with four times sub-sampled input. The last stage is the concatenation of 2D and 3D outputs along with a full-resolution input image which is followed by two convolution layers either with 2D or 3D convolutions. With ComboNet we have achieved $92.1\%$ dice accuracy for aorta segmentation. With Combonet, we have observed up to $2.3\%$ improvement of dice accuracy as opposed to 2D UNet with the full-resolution input image., Comment: 9 pages, 3 figures, 3 tables

We present a novel Neural Embedding Spatio-Temporal (NEST) point process model for spatio-temporal discrete event data and develop an efficient imitation learning (a type of reinforcement learning) based approach for model fitting. Despite the rapid development of one-dimensional temporal point processes for discrete event data, the study of spatial-temporal aspects of such data is relatively scarce. Our model captures complex spatio-temporal dependence between discrete events by carefully design a mixture of heterogeneous Gaussian diffusion kernels, whose parameters are parameterized by neural networks. This new kernel is the key that our model can capture intricate spatial dependence patterns and yet still lead to interpretable results as we examine maps of Gaussian diffusion kernel parameters. The imitation learning model fitting for the NEST is more robust than the maximum likelihood estimate. It directly measures the divergence between the empirical distributions between the training data and the model-generated data. Moreover, our imitation learning-based approach enjoys computational efficiency due to the explicit characterization of the reward function related to the likelihood function; furthermore, the likelihood function under our model enjoys tractable expression due to Gaussian kernel parameterization. Experiments based on real data show our method's good performance relative to the state-of-the-art and the good interpretability of NEST's result.

The increasing volume of seismic data from long-term continuous monitoring motivates the development of algorithms based on convolutional neural network (CNN) for faster and more reliable phase detection and picking. However, many less studied regions lack a significant amount of labeled events needed for traditional CNN approaches. In this paper, we present a CNN-based Phase- Identification Classifier (CPIC) designed for phase detection and picking on small to medium sized training datasets. When trained on 30,146 labeled phases and applied to one-month of continuous recordings during the aftershock sequences of the 2008 MW 7.9 Wenchuan Earthquake in Sichuan, China, CPIC detects 97.5% of the manually picked phases in the standard catalog and predicts their arrival times with a five-times improvement over the ObsPy AR picker. In addition, unlike other CNN-based approaches that require millions of training samples, when the off-line training set size of CPIC is reduced to only a few thousand training samples the accuracy stays above 95%. The online implementation of CPIC takes less than 12 hours to pick arrivals in 31-day recordings on 14 stations. In addition to the catalog phases manually picked by analysts, CPIC finds more phases for existing events and new events missed in the catalog. Among those additional detections, some are confirmed by a matched filter method while others require further investigation. Finally, when tested on a small dataset from a different region (Oklahoma, US), CPIC achieves 97% accuracy after fine tuning only the fully connected layer of the model. This result suggests that the CPIC developed in this study can be used to identify and pick P/S arrivals in other regions with no or minimum labeled phases.

In the presence of background noise, arrival times picked from a surface microseismic data set usually include a number of false picks that can lead to uncertainty in location estimation. To eliminate false picks and improve the accuracy of location estimates, we develop an association algorithm termed RANSAC-based Arrival Time Event Clustering (RATEC) that clusters picked arrival times into event groups based on random sampling and fitting moveout curves that approximate hyperbolas. Arrival times far from the fitted hyperbolas are classified as false picks and removed from the data set prior to location estimation. Simulations of synthetic data for a 1-D linear array show that RATEC is robust under different noise conditions and generally applicable to various types of subsurface structures. By generalizing the underlying moveout model, RATEC is extended to the case of a 2-D surface monitoring array. The effectiveness of event location for the 2-D case is demonstrated using a data set collected by the 5200-element dense Long Beach array. The obtained results suggest that RATEC is effective in removing false picks and hence can be used for phase association before location estimates.