38 results on '"Pei Hwa Wang"'
Search Results
2. Development of novel microsatellite markers to analyze the genetic structure of dog populations in Taiwan
- Author
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Fang-Yu Lai, Yu-Chen Lin, Shih-Torng Ding, Chi-Sheng Chang, Wi-Lin Chao, and Pei-Hwa Wang
- Subjects
dog ,novel microsatellite marker ,population genetic analysis ,Zoology ,QL1-991 - Abstract
Objective Alongside the rise of animal-protection awareness in Taiwan, the public has been paying more attention to dog genetic deficiencies due to inbreeding in the pet market. The goal of this study was to isolate novel microsatellite markers for monitoring the genetic structure of domestic dog populations in Taiwan. Methods A total of 113 DNA samples from three dog breeds—beagles (BEs), bichons (BIs), and schnauzers (SCs)—were used in subsequent polymorphic tests applying the 14 novel microsatellite markers that were isolated in this study. Results The results showed that the high level of genetic diversity observed in these novel microsatellite markers provided strong discriminatory power. The estimated probability of identity (P(ID)) and the probability of identity among sibs (P(ID)sib) for the 14 novel microsatellite markers were 1.7×10−12 and 1.6×10−5, respectively. Furthermore, the power of exclusion for the 14 novel microsatellite markers was 99.98%. The neighbor-joining trees constructed among the three breeds indicated that the 14 sets of novel microsatellite markers were sufficient to correctly cluster the BEs, BIs, and SCs. The principal coordinate analysis plot showed that the dogs could be accurately separated by these 14 loci based on different breeds; moreover, the Beagles from different sources were also distinguished. The first, the second, and the third principal coordinates could be used to explain 44.15%, 26.35%, and 19.97% of the genetic variation. Conclusion The results of this study could enable powerful monitoring of the genetic structure of domestic dog populations in Taiwan.
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- 2022
- Full Text
- View/download PDF
3. Identification of potential descriptors of water-soluble fullerene derivatives responsible for antitumor effects on lung cancer cells via QSAR analysis
- Author
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Hung-Jin Huang, Margarita Chetyrkina, Chui-Wei Wong, Olga A. Kraevaya, Alexander V. Zhilenkov, Ilya I. Voronov, Pei-Hwa Wang, Pavel A. Troshin, and Shan-hui Hsu
- Subjects
NSCLC ,Genetic algorithm ,QSAR ,Antitumor ,Water-soluble fullerene derivatives ,Biotechnology ,TP248.13-248.65 - Abstract
Water-soluble fullerene derivatives are actively investigated as potential drugs for cancer treatment due to their favorable membranotropic properties. Herein, cytotoxic effects of twenty fullerene derivatives with different solubilizing addends were evaluated in three different types of non-small-cell lung carcinoma (NSCLC). The potential structural descriptors of the solubilizing addends related to the inhibitory activities on each type of lung cancer cell were investigated by the quantitative structure–activity relationship (QSAR) approach. The determination coefficient r2 for the recommended QSAR model were 0.9325, 0.8404, and 0.9011 for A549, H460, and H1299 cell lines, respectively. The results revealed that the chemical features of the fullerene-based compounds including aromatic bonds, sulfur-containing aromatic rings, and oxygen atoms are favored properties and promote the inhibitory effects on H460 and H1299 cells. Particularly, thiophene moiety is the key functional group, which was positively correlated with strong inhibitory effects on the three types of lung cancer cells. The useful information obtained from our regression models may lead to the design of more efficient inhibitors of the three types of NSCLC.
- Published
- 2021
- Full Text
- View/download PDF
4. Monitoring of genetically close Tsaiya duck populations using novel microsatellite markers with high polymorphism
- Author
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Fang-Yu Lai, Yi-Ying Chang, Yi-Chen Chen, En-Chung Lin, Hsiu-Chou Liu, Jeng-Fang Huang, Shih-Torng Ding, and Pei-Hwa Wang
- Subjects
breeding and conservation strategies ,genetic structure ,novel microsatellite markers ,tsaiya ducks ,Animal culture ,SF1-1100 ,Animal biochemistry ,QP501-801 - Abstract
Objective A set of microsatellite markers with high polymorphism from Tsaiya duck were used for the genetic monitoring and genetic structure analysis of Brown and White Tsaiya duck populations in Taiwan. Methods The synthetic short tandem repeated probes were used to isolate new microsatellite markers from the genomic DNA of Tsaiya ducks. Eight populations, a total of 566 samples, sourced from Ilan Branch, Livestock Research Institute were genotyped through novel and known markers. The population genetic variables were calculated using optional programs in order to describe and monitor the genetic variability and the genetic structures of these Tsaiya duck populations. Results In total 24 primer pairs, including 17 novel microsatellite loci from this study and seven previously known loci, were constructed for the detection of genetic variations in duck populations. The average values for the allele number, the effective number of alleles, the observed heterozygosity, the expected heterozygosity, and the polymorphism information content were 11.29, 5.370, 0.591, 0.746, and 0.708, respectively. The results of analysis of molecular variance and principal component analysis indicated a contracting Brown Tsaiya duck cluster and a spreading White Tsaiya duck cluster. The Brown Tsaiya ducks and the White Tsaiya ducks with Pekin ducks were just split to six clusters and three clusters when K was set equal to 6 and 3 in the Bayesian cluster analysis. The individual phylogenetic tree revealed eight taxa, and each individual was assigned to its own population. Conclusion According to our study, the 24 novel microsatellite markers exhibited a high capacity to analyze relationships of inter- and intra-population in those populations with a relatively limited degree of genetic diversity. We suggest that duck farms in Taiwan could use the new (novel) microsatellite set to monitor the genetic characteristics and structures of their Tsaiya duck populations at various intervals in order to ensure quality breeding and conservation strategies.
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- 2020
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5. Development of a Rapid Sex Identification Method for Newborn Pigeons Using Recombinase Polymerase Amplification and a Lateral-Flow Dipstick on Farm
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Fang-Yu Lai, Kuang-Chih Chang, Chi-Sheng Chang, and Pei-Hwa Wang
- Subjects
pigeons ,sex identification ,recombinase polymerase amplification-lateral-flow dipstick (RPA-LFD) ,on-farm test ,Veterinary medicine ,SF600-1100 ,Zoology ,QL1-991 - Abstract
According to pigeon racing rules in Taiwan, the pigeon raiser must decide which juveniles will be chosen as soon as possible. Differentiating the sex of young pigeons based on appearances, and other traditional methods, can be time-consuming and require several pieces of equipment. Recombinase polymerase amplification (RPA) combined with a lateral-flow dipstick (LFD) could further simplify the presentation of amplification results. A designed reverse primer and probe were labeled with biotin and FAM (fluorescein), respectively, to serve as ligands in the LFD. With the addition of a designed forward primer, the RPA-LFD can be used to perform sex identification of pigeon DNA. The optimal conditions were determined to require at least 6.3 pg of the DNA template, a temperature of 37 °C, and a reaction time of at least 20 min. Under these conditions, the test band area on the strip appeared as a dark color if the sample contained female template DNA, whereas the male DNA samples did not produce any test signal in any of the conditions. The results of random samples using RPA-LFD under the optimal conditions agreed with the results of the same samples determined by PCR-agarose gel electrophoresis. The approach in this study represents a rapid and accurate method for pigeon sexing.
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- 2022
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6. Population structure and phylogenetic analysis of laboratory rabbits in Taiwan based on microsatellite markers
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Fang-Yu Lai, Shih-Torng Ding, Po-An Tu, R.S. Chen, Der-Yuh Lin, En-Cheng Lin, and Pei-Hwa Wang
- Subjects
genetic monitoring ,laboratory rabbit ,microsatellite markers ,phylogenetic analysis ,Animal culture ,SF1-1100 ,Veterinary medicine ,SF600-1100 - Abstract
Laboratory rabbits used in Taiwan are primarily supplied by the Livestock Research Institute (LRI) and the Animal Drugs Inspection Branch (ADIB) of the Animal Health Research Institute. An analysis of the genetic characteristics and structure of these populations would thus be a fundamental step in building a long-term management programme for maintaining stable animal quality and preserving the genetic variation among the populations. In this study, DNA samples were isolated from founders of 5 populations: New Zealand White rabbits (NZW) and Japanese White rabbits (JPN) from the ADIB, NZW and Rex rabbits (REX) from the LRI, and NZW from a private rabbit breeding farm in Ban Ciao (BC). A set of microsatellite markers, 18 in total, was designed for genetic analysis. The average values for the allele number (Na), effective number of alleles (Ne), observed heterozygosity (Ho), expected heterozygosity (HE), and Wright’s fixation index (FIS) were 5.50, 2.437, 0.442, 0.568 and 0.232, respectively. These results revealed that this set of microsatellite markers has high diversity and that the major local populations have a tendency toward inbreeding. At the same time, analysis of molecular variance results showed that the laboratory rabbits used in Taiwan have maintained a high level of within-population genetic differentiation (83%). The genetic differentiation among clusters was moderate (FST=0.18), and Bayesian cluster analysis showed that the most likely number of groups was 4 (K=4). Principal component analysis (PCA) also showed 4 divergent clusters. The LRI and BC NZW populations were not separated when K=4 was used in a Structure software analysis and were also hard to split until principal component 3 in PCA. The individual unrooted phylogenetic tree showed that the 5 populations were separated, except that some individuals from the LRI NZW population overlapped with the ADIB NZW and BC NZW populations. As such, in order to counteract the reduced FIS (0.232) and maximise heterozygosity, the 3 NZW populations could be interbred or have new genes introduced into them. The set of microsatellite markers used herein was useful for studying the relationships and genetic diversities among these rabbit populations of Taiwan. Based on the resulting data, rabbit farms in Taiwan could select parental stocks for planned mating in the future as part of strategies to preserve and restore the rational breeding of laboratory rabbits.
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- 2018
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7. Survey of genetic structure of geese using novel microsatellite markers
- Author
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Fang-Yu Lai, Po-An Tu, Shih-Torng Ding, Min-Jung Lin, Shen-Chang Chang, En-Chung Lin, Ling-Ling Lo, and Pei-Hwa Wang
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Geese ,Microsatellite Markers ,Genetic Structure of Population ,Animal culture ,SF1-1100 ,Animal biochemistry ,QP501-801 - Abstract
Objective The aim of this study was to create a set of microsatellite markers with high polymorphism for the genetic monitoring and genetic structure analysis of local goose populations. Methods Novel microsatellite markers were isolated from the genomic DNA of white Roman geese using short tandem repeated probes. The DNA segments, including short tandem repeats, were tested for their variability among four populations of geese from the Changhua Animal Propagation Station (CAPS). The selected microsatellite markers could then be used to monitor genetic variability and study the genetic structures of geese from local geese farms. Results 14 novel microsatellite loci were isolated. In addition to seven known loci, two multiplex sets were constructed for the detection of genetic variations in geese populations. The average of allele number, the effective number of alleles, the observed heterozygosity, the expected heterozygosity, and the polymorphism information content were 11.09, 5.145, 0.499, 0.745, and 0.705, respectively. The results of analysis of molecular variance and principal component analysis indicated a contracting white Roman cluster and a spreading Chinese cluster. In white Roman populations, the CAPS populations were depleted to roughly two clusters when K was set equal to 6 in the Bayesian cluster analysis. The founders of private farm populations had a similar genetic structure. Among the Chinese geese populations, the CAPS populations and private populations represented different clads of the phylogenetic tree and individuals from the private populations had uneven genetic characteristics according to various analyses. Conclusion Based on this study’s analyses, we suggest that the CAPS should institute a proper breeding strategy for white Roman geese to avoid further clustering. In addition, for preservation and stable quality, the Chinese geese in the CAPS and the aforementioned proper breeding scheme should be introduced to geese breeders.
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- 2018
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8. Genetic diversity of Formosan pangolins (Manis pentadactyla pentadactyla) in Taiwan based on the MHC gene
- Author
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Jin-Ting Liu, Fang-Yu Lai, Yu-Hsuan Wu, Flora Hsuan-Yi Lo, En-Chung Lin, and Pei-Hwa Wang
- Abstract
The Formosan pangolin (Manis pentadactyla pentadactyla) is an endangered species in Taiwan. The polymorphisms at major histocompatibility complex (MHC) gene regions could provide an indicator for immunological fitness and genetic diversity of a population. In this study, seven different novel markers for MHC genotyping of Formosan pangolin were developed and used to evaluate the genetic diversity of 92 Formosan pangolins. In the MHC markers, six loci showed monomorphism or only two haplotypes. Only one marker, a DLA class II DR-1 beta chain-like locus, showed more diversity: four haplotypes were detected and their relative frequencies were 62.0, 37.0, 0.5 and 0.5%, with nine polymorphic sites in the nucleotide sequence and six variable sites in the amino acid sequence. The non-synonymous substitution rate (dN) and synonymous substitution rate (dS) were 0.026 and 0.017, and showed that this locus appears to be under positive selection (dN /dS >1). Observed heterozygosity (HO) and expected heterozygosity (HE) were 0.413 and 0.482, respectively. FIS was 0.144, indicating that the population might have an inbreeding tendency (FIS > 0). Haplotype diversity (h) was 0.482 and nucleotide diversity (π) was 0.010. Overall, the results indicated that the genetic diversity of MHC genes among Formosan pangolins in Taiwan was insufficient.
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- 2023
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9. Analysis of the population genetic structure using microsatellite markers in goat populations in Taiwan
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Fang-Yu Lai, Chung-Ying Yin, Shih-Torng Ding, Po-An Tu, and Pei-Hwa Wang
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Animal Science and Zoology ,Bioengineering ,Biotechnology - Abstract
Due to the poor growth rate of the Taiwan black (TB) goat in Taiwan, many exotic breeds were brought into breeding schemes to improve TB goat. However, the excessive cross-breeding of alien species with TB goat has decreased its population numbers, genetic variation and biodiversity. Therefore, TB goat population considered an endemic species in Taiwan that needed to be conservation. The objective of the present study was to analyze the genetic structure and TB goat using genetic markers for genetic improvement and to sustain germplasm conservation and utilization. 15 microsatellite markers, divided into three sets, were used to analyze 690 goats sampled from 10 goat populations. The average number of alleles (Na) and effective alleles (Ne) was 11.87 ± 3.93 and 5.093 ± 1.768, respectively. The average expected heterozygosity (HE) and observed heterozygosity (HO) was 0.780 ± 0.084 and 0.602 ± 0.116, respectively. The average polymorphic information content (PIC) was 0.747 ± 0.103; FIS was 0.058 ± 0.075. All 15 microsatellite markers were highly polymorphic. The genetic distances between individuals were estimated to construct a phylogenetic tree. In present study, the 690 goat samples were divided into 8 clusters. The results indicated that these 15 microsatellite markers successfully clustered goat populations in Taiwan and could assist in the preservation of TB goats.
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- 2022
10. Genetic diversity of Formosan pangolins (Manis pentadactyla pentadactyla) in Taiwan based on the MHC gene
- Author
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Jin-Ting Liu, Fang-Yu Lai, Hsuan Wu, Flora Hsuan-Yi Lo, En-Chung Lin, Eric Hsien-Shao Taso, and Pei-Hwa Wang
- Abstract
The Formosan pangolin (Manis pentadactyla pentadactyla) is an endangered species in Taiwan. Usually, a decline in population size leads to a decrease in genetic diversity and increases the risk of extinction. Thus, measuring genetic diversity of Formosan pangolins in Taiwan is important in conservation programs. The major histocompatibility complex (MHC) genes play a crucial role in the immune response in many animals. Therefore, polymorphisms at these gene regions could provide an indicator for the immunological fitness of a population. In this study, seven different novel markers for MHC genotyping of Formosan pangolin were developed. In total, 92 Formosan pangolins from throughout Taiwan were collected and used to evaluate their genetic diversity. In the MHC markers, six loci showed monomorphism or only two haplotypes. Only one marker, a DLA class II DR-1 beta chain-like locus, showed more diversity: four haplotypes were detected and their relative frequencies were 62.0, 37.0, 0.5 and 0.5%, with nine polymorphic sites in the nucleotide sequence and six variable sites in the amino acid sequence. Moreover, the non-synonymous substitution rate (dN) and synonymous substitution rate (dS) were 0.026 and 0.017, and showed that this locus appears to be under positive selection (dN /dS >1). In the DLA class II DR-1 beta chain-like locus, the observed heterozygosity (HO) and expected heterozygosity (HE) were 0.413 and 0.482, respectively. FIS was 0.144, indicating that the population might have an inbreeding tendency (FIS > 0). Haplotype diversity (h) was 0.482 and nucleotide diversity (π) was 0.010. Overall, the present results indicate that the genetic diversity of MHC genes among Formosan pangolins in our sample population may be insufficient.
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- 2022
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11. Identification of potential descriptors of water-soluble fullerene derivatives responsible for antitumor effects on lung cancer cells via QSAR analysis
- Author
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Chui-Wei Wong, Hung-Jin Huang, Ilya I. Voronov, Pei-Hwa Wang, Shan-hui Hsu, Pavel A. Troshin, Olga A. Kraevaya, Margarita Chetyrkina, and Alexander V. Zhilenkov
- Subjects
Quantitative structure–activity relationship ,Quantitative Biology::Tissues and Organs ,Biophysics ,NSCLC ,Biochemistry ,Quantitative Biology::Cell Behavior ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Structural Biology ,Physics::Atomic and Molecular Clusters ,Genetics ,medicine ,Thiophene ,Moiety ,Lung cancer ,Cytotoxicity ,030304 developmental biology ,Water-soluble fullerene derivatives ,0303 health sciences ,QSAR ,Aromaticity ,Antitumor ,medicine.disease ,Combinatorial chemistry ,Computer Science Applications ,respiratory tract diseases ,chemistry ,Genetic algorithm ,Cell culture ,030220 oncology & carcinogenesis ,Functional group ,TP248.13-248.65 ,Research Article ,Biotechnology - Abstract
Graphical abstract A series of water-soluble fullerene derivatives are synthesized to produce antitumor effects on three types of lung cancer cells. The fullerene compounds with sulfur-containing aromatic rings showed the most effective inhibition on cell proliferation among all fullerene compounds. The quantitative structure–activity relationship (QSAR) models illustrate that thiophene moiety in the fullerene cage has positive correlation with the antitumor effect of the fullerene derivatives., Water-soluble fullerene derivatives are actively investigated as potential drugs for cancer treatment due to their favorable membranotropic properties. Herein, cytotoxic effects of twenty fullerene derivatives with different solubilizing addends were evaluated in three different types of non-small-cell lung carcinoma (NSCLC). The potential structural descriptors of the solubilizing addends related to the inhibitory activities on each type of lung cancer cell were investigated by the quantitative structure–activity relationship (QSAR) approach. The determination coefficient r2 for the recommended QSAR model were 0.9325, 0.8404, and 0.9011 for A549, H460, and H1299 cell lines, respectively. The results revealed that the chemical features of the fullerene-based compounds including aromatic bonds, sulfur-containing aromatic rings, and oxygen atoms are favored properties and promote the inhibitory effects on H460 and H1299 cells. Particularly, thiophene moiety is the key functional group, which was positively correlated with strong inhibitory effects on the three types of lung cancer cells. The useful information obtained from our regression models may lead to the design of more efficient inhibitors of the three types of NSCLC.
- Published
- 2021
12. Pedigree-based analyses of changes in genetic variability in three major swine breeds in Taiwan after a disease outbreak
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Ruei-Syuan Wu, Hsu-Chang Wang, Chan Liang Su, Pei-Hwa Wang, and En-Chung Lin
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General Veterinary ,Animal Science and Zoology - Abstract
Pedigree analysis was performed in three major Taiwanese swine breeds to evaluate the genetic variability in the current population and determine the main reason for genetic diversity (GD) loss after the occurrence of foot-and-mouth disease (FMD) in Taiwan. The pedigree files of the Duroc, Landrace, and Yorkshire breeds, containing 60,237, 87,177, and 34,373 records, respectively, were analyzed. We divided the population into two subpopulations (pre-1998 and post-1998) to determine the role of FMD in GD loss. Pedigree completeness and related indicators were analyzed to evaluate the pedigree quality, and several parameters were used to measure the levels of GD and further used to determine the major cause of GD loss. The pedigree completeness indexes for the different breeds were higher than 0.60, and the trend was enhanced after the FMD outbreak. The estimated proportion of random genetic drift in GD loss increased in all breeds over time (from 62.64% to 78.44% in Duroc; from 26.26% to 57.99% in Landrace; and from 47.97% to 55.00% in Yorkshire, respectively). The effective population size of Duroc and Landrace were increased by the time (Duroc: from 61.73 to 84.75; Landrace: from 108.70 to 113.64); however, it shows opposite trend in Yorkshire population (decline from 86.21 to 50.00). In summary, the occurrence of FMD led to the major loss of GD loss by random genetic drift. Therefore, for the recovery of GD, breeders in Taiwan should increase the effective population size with newly imported genetic materials and adjust the breeding strategy to reduce the inbreeding rate.
- Published
- 2021
13. Docosahexaenoic Acid Suppresses Expression of Adipogenic Tetranectin through Sterol Regulatory Element-Binding Protein and Forkhead Box O Protein in Pigs
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Yu-Jen Chen, Harry J. Mersmann, Shih-Torng Ding, Chao-Wei Huang, Ya Chin Wang, Jui Ting Yang, and Pei-Hwa Wang
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0301 basic medicine ,Docosahexaenoic Acids ,Swine ,forkhead box O protein (FoxO) ,Adipose tissue ,FOXO1 ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Gene expression ,Adipocytes ,Animals ,Humans ,TX341-641 ,Lectins, C-Type ,Nutritional Physiological Phenomena ,docosahexaenoic acid (DHA) ,adipose tissues ,chemistry.chemical_classification ,Sterol Regulatory Element Binding Proteins ,Nutrition and Dietetics ,Adipogenesis ,sterol regulatory element-binding protein-1c (SREBP-1c) ,Nutrition. Foods and food supply ,Chemistry ,Binding protein ,Fibrinolysis ,Fatty acid ,food and beverages ,pigs ,Forkhead Transcription Factors ,Molecular biology ,Sterol regulatory element-binding protein ,030104 developmental biology ,HEK293 Cells ,Docosahexaenoic acid ,lipids (amino acids, peptides, and proteins) ,tetranectin ,Food Science - Abstract
Tetranectin (TN), a plasminogen-binding protein originally involved in fibrinolysis and bone formation, was later identified as a secreted adipokine from human and rat adipocytes and positively correlated with adipogenesis and lipid metabolism in adipocytes. To elucidate the nutritional regulation of adipogenic TN from diets containing different sources of fatty acids (saturated, n-6, n-3) in adipocytes, we cloned the coding region of porcine TN from a cDNA library and analyzed tissue expressions in weaned piglets fed with 2% soybean oil (SB, enriched in n-6 fatty acids), docosahexaenoic acid oil (DHA, an n-3 fatty acid) or beef tallow (BT, enriched in saturated and n-9 fatty acids) for 30 d. Compared with tissues in the BT- or SB-fed group, expression of TN was reduced in the adipose, liver and lung tissues from the DHA-fed group, accompanied with lowered plasma levels of triglycerides and cholesterols. This in vivo reduction was also confirmed in porcine primary differentiated adipocytes supplemented with DHA in vitro. Then, promoter analysis was performed. A 1956-bp putative porcine TN promoter was cloned and transcription binding sites for sterol regulatory-element binding protein (SREBP)-1c or forkhead box O proteins (FoxO) were predicted on the TN promoter. Mutating binding sites on porcine TN promoters showed that transcriptional suppression of TN by DHA on promoter activity was dependent on specific response elements for SREBP-1c or FoxO. The inhibited luciferase promoter activity by DHA on the TN promoter coincides with reduced gene expression of TN, SREBP-1c, and FoxO1 in human embryonic kidney HEK293T cells supplemented with DHA. To conclude, our current study demonstrated that the adipogenic TN was negatively regulated by nutritional modulation of DHA both in pigs in vivo and in humans/pigs in vitro. The transcriptional suppression by DHA on TN expression was partly through SREBP-1c or FoxO. Therefore, down-regulation of adipogenic tetranectin associated with fibrinolysis and adipogenesis may contribute to the beneficial effects of DHA on ameliorating obesity-induced metabolic syndromes such as atherosclerosis and adipose dysfunctions.
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- 2021
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14. Monitoring of genetically close Tsaiya duck populations using novel microsatellite markers with high polymorphism
- Author
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Pei-Hwa Wang, Jeng-Fang Huang, En-Chung Lin, Shih-Torng Ding, Yi-Yinhg Chang, Hsiu-Chou Liu, Fang-Yu Lai, and Chen Yi-Chen
- Subjects
0106 biological sciences ,Population ,lcsh:Animal biochemistry ,Genetic Structure ,Biology ,Tsaiya Ducks ,01 natural sciences ,Analysis of molecular variance ,Article ,Genetic variation ,Genetic variability ,education ,lcsh:QP501-801 ,Breeding and Conservation Strategies ,lcsh:SF1-1100 ,Genetic diversity ,education.field_of_study ,Novel Microsatellite Markers ,0402 animal and dairy science ,04 agricultural and veterinary sciences ,Animal Breeding and Genetics ,040201 dairy & animal science ,Evolutionary biology ,Genetic structure ,Microsatellite ,Animal Science and Zoology ,lcsh:Animal culture ,010606 plant biology & botany ,Food Science ,Genetic monitoring - Abstract
Objective: A set of microsatellite markers with high polymorphism from Tsaiya duck were used for the genetic monitoring and genetic structure analysis of Brown and White Tsaiya duck populations in Taiwan.Methods: The synthetic short tandem repeated probes were used to isolate new microsatellite markers from the genomic DNA of Tsaiya ducks. Eight populations, a total of 566 samples, sourced from Ilan Branch, Livestock Research Institute were genotyped through novel and known markers. The population genetic variables were calculated using optional programs in order to describe and monitor the genetic variability and the genetic structures of these Tsaiya duck populations.Results: In total 24 primer pairs, including 17 novel microsatellite loci from this study and seven previously known loci, were constructed for the detection of genetic variations in duck populations. The average values for the allele number, the effective number of alleles, the observed heterozygosity, the expected heterozygosity, and the polymorphism information content were 11.29, 5.370, 0.591, 0.746, and 0.708, respectively. The results of analysis of molecular variance and principal component analysis indicated a contracting Brown Tsaiya duck cluster and a spreading White Tsaiya duck cluster. The Brown Tsaiya ducks and the White Tsaiya ducks with Pekin ducks were just split to six clusters and three clusters when K was set equal to 6 and 3 in the Bayesian cluster analysis. The individual phylogenetic tree revealed eight taxa, and each individual was assigned to its own population.Conclusion: According to our study, the 24 novel microsatellite markers exhibited a high capacity to analyze relationships of inter- and intra-population in those populations with a relatively limited degree of genetic diversity. We suggest that duck farms in Taiwan could use the new (novel) microsatellite set to monitor the genetic characteristics and structures of their Tsaiya duck populations at various intervals in order to ensure quality breeding and conservation strategies.
- Published
- 2019
15. Analysis of the genes that may affect the color of the Taiwan swamp buffalo population.
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Pei-Jung Hsin, Chi-Sheng Chang, Pi-Hua Chuang, Ya-Wen Hsiao, Chih-Yu Lin, and Pei-Hwa Wang
- Subjects
CALVES ,MAMMAL genetics ,HISTOCHEMISTRY ,GENE expression in mammals ,POLYMERASE chain reaction - Abstract
Copyright of Journal of the Chinese Society of Animal Science is the property of Chinese Society of Animal Science and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
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- 2022
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16. Chinese Herbal Medicine Formula Guizhi Li-Zhong Tang as an Alternative to Antibiotic Feed Additives for Preventing Pneumonia in Piglets through Antioxidant, Anti-Inflammatory, and Antiapoptotic Protection
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Chen Wen Lu, Sheue Er Wang, Chung Hsin Wu, Wan Jhen Wu, Ming Chung Lee, Wu Chang Chuang, Li Yu Su, Che Hsuan Wang, and Pei Hwa Wang
- Subjects
Article Subject ,medicine.drug_class ,business.industry ,Feed additive ,Antibiotics ,Weanling ,Eosinophil ,Pharmacology ,medicine.disease ,Anti-inflammatory ,chemistry.chemical_compound ,Pneumonia ,Other systems of medicine ,medicine.anatomical_structure ,Complementary and alternative medicine ,chemistry ,medicine ,Tilmicosin ,Respiratory system ,business ,RZ201-999 ,Research Article - Abstract
Weanling piglets often develop respiratory diseases such as pneumonia because they encounter substantial environmental stress. This study investigated an alternative herbal feed additive, Guizhi Li-Zhong Tang (GLZ), for preventing pneumonia in weanling piglets. An in vitro experiment demonstrated that GLZ has high antioxidant capacity and low cytotoxicity toward Kupffer cells. In addition, GLZ treatment can alleviate lipopolysaccharide (LPS)-induced damage in Kupffer cells. A total of 94 4-week-old piglets were randomly divided into three groups, which received sham treatment, 0.2% Tilmicosin antibiotic (TAB) treatment, or 0.2% GLZ treatment. Piglets receiving the GLZ treatment had a higher survival rate and higher immunoglobulin G levels but lower allergy-related eosinophil levels and cough incidence than did piglets receiving the sham or 0.2% TAB treatments. Through immunohistochemistry and Western blot analysis, we discovered that piglets receiving the 0.2% GLZ treatment had significantly higher expression of antioxidant-related SOD2 and lower expression of oxidative-stress-related 3-NT ( p < 0.01 ), inflammation-related TNF-α ( p < 0.01 ) and NF-κB ( p < 0.05 ), and apoptosis-related caspase-3 ( p < 0.01 ) in lung tissue than did piglets receiving the sham or 0.2% TAB treatment. Therefore, GLZ treatment is promising as an alternative to antibiotic medicine for weanling piglets because of its protective antioxidative, anti-inflammatory, and antiapoptotic effects in lung tissue.
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- 2021
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17. Alternative antibiotic feed additives alleviate pneumonia with inhibiting ACE-2 expression in the respiratory system of piglets
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Sheue Er Wang, Chung Hsin Wu, Che Hsuan Wang, Wan Jhen Wu, Chen Wen Lu, Li Yu Su, and Pei Hwa Wang
- Subjects
0301 basic medicine ,Immunoglobulin A ,feed additive ,Allergy ,medicine.drug_class ,Feed additive ,animal diseases ,Antibiotics ,Weanling ,lcsh:TX341-641 ,Pharmacology ,piglets ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,fluids and secretions ,angiotensin‐converting enzyme 2 ,medicine ,Weaning ,pneumonia ,030212 general & internal medicine ,Tilmicosin ,Original Research ,biology ,integumentary system ,business.industry ,alternative antibiotic ,medicine.disease ,Pneumonia ,030104 developmental biology ,chemistry ,biology.protein ,business ,lcsh:Nutrition. Foods and food supply ,Food Science - Abstract
Weaning piglets often suffer from pneumonia during growth, so in general, antibiotics are used by owners to make piglets grow smoothly. However, antibiotics may be accompanied by many side effects such as gastrointestinal discomfort and allergies. The aim of this study was to develop an alternative antibiotic herbal veterinary medicine for alleviating pneumonia in weanling piglets. As observed in the pig ranches, many weanling piglets suffer from the pneumonia and also show high expression of angiotensin‐converting enzyme 2 (ACE‐2) in their respiratory and intestinal tracts. ACE inhibitors have been reported that can decrease pneumonia risk through their main mechanism of action. Thus, we also try to find alternative antibiotic feed additives that can reduce expression of ACE‐2 in piglets. We selected the Guizhi Li‐Zhong Tang Extract Granules (GLZ) as a natural product for piglets. Then, we compared the serum immunoglobulin levels of piglets with sham, tilmicosin antibiotic (TAB), and GLZ treatments. Our results showed that piglets with GLZ treatment had significantly a higher expression of immunoglobulin A and immunoglobulin G but a lower expression of immunoglobulin E than those with sham and TAB treatments. In addition, piglets with GLZ treatment showed obviously low pneumonia incidence than those with sham and TAB treatments. Similarly, piglets with GLZ treatment showed significantly lower expressions of ACE‐2 in their tracheal, bronchial, and lung tissues than those with sham and TAB treatments. GLZ seems to be an alternative ACE inhibitor that can decrease pneumonia risk through inhibiting ACE‐2 expression and alleviating allergies in their respiratory systems. Thus, we suggest that GLZ can be an alternative antibiotic feed additive for weaning piglets., Schematic diagram illustrates that GLZ treatment can protect the respiratory system of weanling piglets from allergies and respiratory symptoms because of reducing ACE‐2 expression in the respiratory systems.
- Published
- 2020
18. Effects of aqueous extracts of 'betel quid' and its constituents on testosterone production by dispersed mouse interstitial cells
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Nai-Yen Jack Yang, Khrishna Kaphle, Pei-Hwa Wang, De-Shien Jong, Leang-Shin Wu, and Jen-Hsou Lin
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Medicine, Chinese -- Research ,Testosterone -- Research ,Materia medica, Vegetable -- Research ,Materia medica, Vegetable -- Health aspects ,Plant extracts -- Research ,Plant extracts -- Health aspects ,Mice as laboratory animals -- Research ,Medicine, Botanic -- Research ,Medicine, Herbal -- Research ,Chewing gum -- Health aspects ,Chewing gum -- Research ,Health - Published
- 2004
19. Survey of genetic structure of geese using novel microsatellite markers
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Shih-Torng Ding, Fang-Yu Lai, Ling-Ling Lo, Po-An Tu, En-Chung Lin, Min-Jung Lin, Pei-Hwa Wang, and Shen-Chang Chang
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0301 basic medicine ,Phylogenetic tree ,lcsh:Animal biochemistry ,Microsatellite Markers ,Biology ,Animal Breeding and Genetics ,Analysis of molecular variance ,Article ,03 medical and health sciences ,030104 developmental biology ,Goose ,Evolutionary biology ,biology.animal ,Genetic structure ,Genetic variation ,Geese ,Genetic Structure of Population ,Microsatellite ,Animal Science and Zoology ,lcsh:Animal culture ,Genetic variability ,lcsh:QP501-801 ,lcsh:SF1-1100 ,Food Science ,Genetic monitoring - Abstract
Objective The aim of this study was to create a set of microsatellite markers with high polymorphism for the genetic monitoring and genetic structure analysis of local goose populations. Methods Novel microsatellite markers were isolated from the genomic DNA of white Roman geese using short tandem repeated probes. The DNA segments, including short tandem repeats, were tested for their variability among four populations of geese from the Changhua Animal Propagation Station (CAPS). The selected microsatellite markers could then be used to monitor genetic variability and study the genetic structures of geese from local geese farms. Results 14 novel microsatellite loci were isolated. In addition to seven known loci, two multiplex sets were constructed for the detection of genetic variations in geese populations. The average of allele number, the effective number of alleles, the observed heterozygosity, the expected heterozygosity, and the polymorphism information content were 11.09, 5.145, 0.499, 0.745, and 0.705, respectively. The results of analysis of molecular variance and principal component analysis indicated a contracting white Roman cluster and a spreading Chinese cluster. In white Roman populations, the CAPS populations were depleted to roughly two clusters when K was set equal to 6 in the Bayesian cluster analysis. The founders of private farm populations had a similar genetic structure. Among the Chinese geese populations, the CAPS populations and private populations represented different clads of the phylogenetic tree and individuals from the private populations had uneven genetic characteristics according to various analyses. Conclusion Based on this study’s analyses, we suggest that the CAPS should institute a proper breeding strategy for white Roman geese to avoid further clustering. In addition, for preservation and stable quality, the Chinese geese in the CAPS and the aforementioned proper breeding scheme should be introduced to geese breeders.
- Published
- 2017
20. Diagnostic tests for caprine arthritis-encephalitis virus (CAEV) infection
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Fang-Yu Lai, Shen-Shyuan Yang, and Pei-Hwa Wang, Po-An Tu, and Jen-Wen Shiau
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business.industry ,Diagnostic test ,Medicine ,Caprine arthritis encephalitis virus CAEV ,business ,Virology - Published
- 2017
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21. Determination of Terahertz-frequency-dependent Skin Penetration Depth Based on Water Sorption-desorption Assessment
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Chin-Ping Yu, Pei-Hwa Wang, Borwen You, and Ja-Yu Lu
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medicine.anatomical_structure ,Adsorption ,Materials science ,integumentary system ,Surface wave ,Terahertz radiation ,Desorption ,Stratum corneum ,medicine ,Dielectric ,Penetration depth ,Molecular physics ,Overlayer - Abstract
Frequency-dependent terahertz (THz) penetration depth is experimentally assessed using a multilayered water-skin model. The skin adsorbed with one water overlayer is considered as the multilayered structure to reflect THz waves and the reflected THz field variation is experimentally observed during a water desorption process. The skin penetration depths can thus be derived using the multilayered water-skin model while considering the measured reflectivity, water dielectric constants, and effective thicknesses of the adsorbed water overlayer. The largest penetration depth is independent of the illumination power of THz wave and in 0.4–0.6 THz at approximately 0.3 mm, covering the possible depths of stratum corneum (SC) and partial epidermis. The distinctly high penetration depth of 0.4–0.6 THz waves is finally confirmed via drying and damaging the SC.
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- 2019
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22. Frequency-dependent skin penetration depth of terahertz radiation determined by water sorption-desorption
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Chin-Ping Yu, Ja-Yu Lu, Pei Hwa Wang, Borwen You, and Ching Yu Chen
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Materials science ,Terahertz radiation ,Swine ,02 engineering and technology ,Dielectric ,Radiation ,Radiation Dosage ,01 natural sciences ,Overlayer ,010309 optics ,Optics ,Desorption ,0103 physical sciences ,Animals ,Penetration depth ,Skin ,integumentary system ,business.industry ,Water ,021001 nanoscience & nanotechnology ,Atomic and Molecular Physics, and Optics ,Attenuation coefficient ,Models, Animal ,Female ,0210 nano-technology ,business ,Relative Biological Effectiveness ,Terahertz Radiation ,Visible spectrum - Abstract
A multilayered water-skin model is used to experimentally verify a new sensing method for determining the skin penetration depth of radiation with 0.1-0.9 terahertz (THz) frequencies. A water overlayer is dripped on a skin sample to form a multilayered structure for dynamically measuring the reflected THz-wave amplitude during water desorption. Skin penetration depths can be successfully derived by using the multilayered water-skin model and by considering the measured reflectivity, water dielectric constants, and effective thicknesses of the water overlayer on the skin sample. The maximum penetration depth is approximately 0.3 mm and is obtained with wave frequencies of 0.4-0.6 THz. This penetration depth encompasses the stratum corneum (SC) and part of the epidermis. The high penetration depth of 0.4-0.6 THz waves is also confirmed in the dried and damaged SC.
- Published
- 2018
23. A Recombinase Polymerase Amplification Lateral Flow Dipstick for Field Diagnosis of Bovine Leukemia Virus Infection and its Effectiveness Compared to iiPCR. and ELISA
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Pei-Hwa Wang, Fang-Yu Lai, Jen-Wen Shiau, Po-An Tu, Yi-Hsuan Chen, Jia-Shian Shiu, and Victor Fei Pang
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Infectious Diseases ,Bovine leukemia virus ,Virology ,Recombinase Polymerase Amplification ,Dipstick ,Biology ,biology.organism_classification - Published
- 2018
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24. Efficient SNP Discovery by Combining Microarray and Lab-on-a-Chip Data for Animal Breeding and Selection
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Yen-Wen Lu, Pei-Hwa Wang, Fang-Wei Liu, Shih-Torng Ding, Ling-Ling Lo, En-Chung Lin, Yu-Tsung Lin, and Chao-Wei Huang
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Animal breeding ,business.industry ,chicken ,Biomedical Engineering ,Bioengineering ,Single-nucleotide polymorphism ,swine ,Computational biology ,Review ,economic traits ,Biology ,Biochemistry ,Biotechnology ,SNP genotyping ,lcsh:Biochemistry ,marker-assisted selection (MAS) ,Genetic marker ,Trait ,SNP ,lcsh:QD415-436 ,business ,Genotyping Techniques ,Selection (genetic algorithm) - Abstract
The genetic markers associated with economic traits have been widely explored for animal breeding. Among these markers, single-nucleotide polymorphism (SNPs) are gradually becoming a prevalent and effective evaluation tool. Since SNPs only focus on the genetic sequences of interest, it thereby reduces the evaluation time and cost. Compared to traditional approaches, SNP genotyping techniques incorporate informative genetic background, improve the breeding prediction accuracy and acquiesce breeding quality on the farm. This article therefore reviews the typical procedures of animal breeding using SNPs and the current status of related techniques. The associated SNP information and genotyping techniques, including microarray and Lab-on-a-Chip based platforms, along with their potential are highlighted. Examples in pig and poultry with different SNP loci linked to high economic trait values are given. The recommendations for utilizing SNP genotyping in nimal breeding are summarized.
- Published
- 2015
25. Short communication Novel microsatellite markers in the Formosan pangolin (Manis pentadactyla pentadactyla).
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Yu-Hsuan Wu, Fang-Yu Lai, Shin-Torng Ding, Hsuan-Yi Lo, Flora, and Pei-Hwa Wang
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MICROSATELLITE repeats ,PANGOLINS ,WILD animal trade ,PROBABILITY theory - Abstract
Copyright of Journal of the Chinese Society of Animal Science is the property of Chinese Society of Animal Science and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)
- Published
- 2021
26. Characterization of the Genetic Diversity and Population Structure for the Yellow Cattle in Taiwan Based on Microsatellite Markers
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Jan-Chi Huang, Guang-Fu Li, Pei-Hwa Wang, Der-Yuh Lin, Po-An Tu, and De-Chi Wang
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Genetics ,education.field_of_study ,Veterinary medicine ,Genetic diversity ,Phylogenetic tree ,Population size ,Population ,Taiwan ,Genetic Variation ,Bioengineering ,Breeding ,Biology ,Genetics, Population ,Genetic variation ,Animals ,Microsatellite ,Cattle ,Animal Science and Zoology ,Genetic variability ,education ,Inbreeding ,Microsatellite Repeats ,Biotechnology - Abstract
In recent years, the population size of Taiwan yellow cattle has drastically declined, even become endangered. A preservation project, Taiwan Yellow Cattle Genetic Preservation Project (TYCGPP), was carried out at the Livestock Research Institute (LRI) Hengchun branch (1988-present). An analysis of intra- and inter- population variability was performed to be the first step to preserve this precious genetic resource. In this work, a total number of 140 individuals selected from the five Taiwan yellow cattle populations were analyzed using 12 microsatellite markers (loci). These markers determined the level of genetic variation within and among populations as well as the phylogenetic structure. The total number of alleles detected (122, 10.28 per locus) and the expected heterozygosity (0.712) indicated that these five populations had a high level of genetic variability. Bayesian cluster analysis showed that the most likely number of groups was 2 (K = 2). Genetic differentiation among clusters was moderate (F ST = 0.095). The result of AMOVA showed that yellow cattle in Taiwan had maintained a high level of within-population genetic differentiation (91%), the remainder being accounted for by differentiation among subpopulations (4%), and by differentiation among regions (5%). The results of STRUCTURE and principal component analysis (PCA) revealed two divergent clusters. The individual unrooted phylogenetic tree showed that some Kinmen yellow cattle in the Hengchun facility (KMHC individuals) were overlapped with Taiwan yellow cattle (TW) and Taiwan yellow cattle Hengchun (HC) populations. Also, they were overlapped with Kinmen × Taiwan (KT) and Kinmen yellow cattle (KM) populations. It is possible that KMHC kept similar phenotypic characteristics and analogous genotypes between TW and KM. A significant inbreeding coefficient (F IS = 0.185; P < 0.01) was detected, suggesting a medium level of inbreeding for yellow cattle in Taiwan. The hypothesis that yellow cattle in Taiwan were derived from two different clusters was also supported by the phylogenetic tree constructed by the UPGMA, indicating that the yellow cattle in Taiwan and in Kinmen should be treated as two different management units. This result will be applied to maintain a good level of genetic variability and rusticity (stress-resistance) and to avoid further inbreeding for yellow cattle population in Taiwan.
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- 2014
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27. Polymorphisms in the promoter region of myostatin gene are associated with carcass traits in pigs
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Ling-Ling Lo, C.-C. Hsu, En-Chung Lin, Yee-Chun Chen, Pei-Hwa Wang, Po-An Tu, R.-S. Lin, and Jen-Wen Shiau
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Genetics ,Genotyping Techniques ,Swine ,Skeletal muscle ,Single-nucleotide polymorphism ,General Medicine ,Myostatin ,Biology ,Marker-assisted selection ,Polymorphism, Single Nucleotide ,SNP genotyping ,Andrology ,Phenotype ,medicine.anatomical_structure ,Species Specificity ,Food Animals ,Polymorphism (computer science) ,Genotype ,biology.protein ,medicine ,Animals ,Animal Science and Zoology ,Allele ,Promoter Regions, Genetic - Abstract
Higher average daily gain, more lean meat yield and less fat yield of porcine carcass increase selling profits for animal producers. Myostatin (MSTN), previously called GDF8, is a member of transforming growth factor-β (TGF-β) superfamily. It is a negative regulator for both embryonic development and adult homeostasis of skeletal muscle. In this study, the genotypes of the previously described SNPs MSTN g.435GA and g.447AG SNPs in 66 Duroc pigs, 33 Landrace pigs, 180 Duroc × Landrace (DL) pigs and 155 Duroc × Yorkshire × Landrace (DYL) pigs were determined by Taqman SNP Genotyping Assays. For Duroc and Landrace pigs, MSTN g.435GG/g.447AA individual had greater backfat thickness (p 0.05) than g.435AA/g.447GG individual, whereas MSTN g.435AA/g.447GG had greater meat (p 0.05) and meat percentage (p 0.05) than g.435GA/g.447AG individual. For DL and DYL pigs, the MSTN g.435GG/g.447AA animals were greater in backfat at ultrasound 10th rib (p 0.05) and carcass 10th rib (p 0.01) than g.435AA/g.447GG individual. The MSTN g.435AA/g.447GG individual also had higher values than g.435GG/g.447AA for anterior-end meat (p 0.05), posterior-end meat (p 0.01), total meat weight (p 0.01) and meat percentage (p 0.01). This study confirmed evidence that MSTN g.435GA and g.447AG affected carcass traits in pigs. The effects of the mutated alleles were additive with the maximal effects resulting from two copies of the mutated allele. Selection for MSTN g.435A/g.447G allele is expected to increase muscle of limb and total meat production and decrease backfat thickness.
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- 2013
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28. A Comparison Study for the Efficacy of Novel Micropatterned Nerve Conduits versus Commercial Ones in Regeneration of Transected Rat Sciatic Nerve
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Pei-Hwa Wang, Ching-Fen Jiang, Chia-Hung Lin, Chen-Tung Yen, Shan-hui Hsu, and Lien-Guo Dai
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medicine.medical_specialty ,business.industry ,Regeneration (biology) ,Comparison study ,Medicine ,Anatomy ,Sciatic nerve ,business ,Surgery - Published
- 2012
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29. Development of 24 new microsatellite markers in the Crested Serpent Eagle (Spilornis cheela hoya)
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Shih-Torng Ding, Pei-Hwa Wang, Chao Ming-Chieh, Chi-Chen Hsu, Fang-Tse Chan, Hsiao-Wei Yuan, Hsien-Shao Tsao, Yi-Ying Chang, and Hsin-Hsin Hsu
- Subjects
Genetics ,Eagle ,education.field_of_study ,biology ,Population ,Locus (genetics) ,Spilornis cheela ,biology.organism_classification ,Evolutionary biology ,Genetic marker ,biology.animal ,Genetic structure ,Hoya ,Microsatellite ,education ,Ecology, Evolution, Behavior and Systematics - Abstract
Twenty-four microsatellite markers were developed for the Crested Serpent Eagle (Spilornis cheela hoya) composing a new marker set. The markers were tested on 61 Crested Serpent Eagle individuals. The number alleles ranged from 2 to 8 per locus (average = 3.8), and the effective number of alleles ranged from 1.13 to 6.07 (average = 2.34). In the new marker set, there were 11 markers with high polymorphism (PIC > 0.5), and the average HE and HO over all loci was 0.50 and 0.49, respectively. The results showed that the new marker set was highly polymorphic as an individual genetic marker compared to the existing cross-species markers previously used for population genetic structure monitoring of the Taiwan Crested Serpent Eagle. In conclusion, the microsatellite marker set developed can be applied as a molecular tool to investigate the genetic structure or phylogeny of the Crested Serpent Eagle.
- Published
- 2012
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30. Sex identification in the Collared Scops Owl (Otus bakkamoena) with novel markers generated by random amplified polymorphic DNA
- Author
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P. I. Lin, Shih-Torng Ding, L. M. Wang, Hsiao-Wei Yuan, Pei-Hwa Wang, F. T. Chan, Hsien-Shao Tsao, H. A. Hsu, C. C. Chen, and Chao Ming-Chieh
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Genetics ,biology ,Collared scops owl ,Sexing ,biology.organism_classification ,RAPD ,law.invention ,Sexual dimorphism ,Otus bakkamoena ,Genetic marker ,law ,Primer (molecular biology) ,Ecology, Evolution, Behavior and Systematics ,Polymerase chain reaction - Abstract
The Collared Scops Owl (Otus bakkamoena) is not sexually dimorphic, which makes it difficult to discriminate between sexes. Hence, it is difficult to establish a breeding and conservation program. This study report, the identification of a novel random amplified polymorphic DNA (RAPD) marker for sexing the species O. bakkamoena. A novel 1,307-bp sex-specific fragment, AN15, in females was initially generated by RAPD fingerprinting using the primer OPAN15. We then designed the nested primer set, CsoAN15-6F/R, and amplified a sex-specific fragment of 349 bp in females, as well as a 796-bp fragment shared by both sexes. The latter fragment can serve as an internal control for monitoring both the PCR reaction and preventing false sex assignment. Our current study accurately identified the sex of each individual (including 8 males and 8 females) using this primer set. This novel primer set, thus, provides a sex-specific DNA marker for accurate sex identification in this species.
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- 2012
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31. Use of random amplified polymorphic DNA to identify several novel markers for sex identification in the crested serpent eagle and crested goshawk
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Shih-Torng Ding, H. A. Hsu, L. M. Wang, Pei-Hwa Wang, P. I. Lin, C.H. Chang, F. T. Chan, M.C. Chao, and Hsiao-Wei Yuan
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Genetic Markers ,Male ,Eagle ,Sex Determination Analysis ,Eagles ,Molecular Sequence Data ,EcoRI ,Spilornis cheela ,Food Animals ,biology.animal ,Hoya ,Animals ,Small Animals ,Genetics ,Sex Characteristics ,Base Sequence ,biology ,Equine ,Nucleic acid sequence ,biology.organism_classification ,DNA Fingerprinting ,Hawks ,Random Amplified Polymorphic DNA Technique ,RAPD ,DNA-Binding Proteins ,Genetic marker ,biology.protein ,Female ,Animal Science and Zoology ,Primer (molecular biology) ,Sequence Alignment - Abstract
The crested serpent eagle (Spilornis cheela hoya) has no distinct sexual dimorphic traits. In the current study, we report the results of an EE0.6 (EcoRI 0.6-kb fragment) sequence applied to S. cheela hoya and a novel random amplified polymorphic DNA (RAPD) marker that can be used to sex individuals within the species S. cheela hoya and Accipiter trivigatus formosae (crested goshawk). We used sex-specific primers for the avian CHD1 (chromo-helicase-DNA-binding 1) gene and the EE0.6 sequence in PCR assays to determine sex. In addition, 120 random primers were used for RAPD fingerprinting to search for novel sex-specific fragments of S. cheela hoya. The OPBB08 random primer generated a 1241-bp sex-specific fragment in all female S. cheela hoya. From the nucleotide sequence, PCR primers were designed to amplify 553-, 895-, and 194-bp sex-specific fragments present in all female S. cheela hoya. One of these primer pairs (ScBB08-7F/R) also amplified a male/female common fragment that can be used as an internal control (543 bp). Moreover, one of the primer pairs (ScBB08-5aF/5bR) could be used to identify genders of A. trivigatus formosae. In conclusion, we identified novel sex-specific DNA markers of S. cheela hoya and A. trivigatus formosae that can be used for rapid and accurate sex identification.
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- 2009
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32. Development of microsatellite markers in an ungulate mammal, the Formosan serow (Capricornis swinhoei)
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Shih-Torng Ding, Y. Y. Chang, Pei-Hwa Wang, En-Chung Lin, Hsien-Shao Tsao, Chao Ming-Chieh, and Hsiao-Wei Yuan
- Subjects
Genetics ,education.field_of_study ,biology ,Range (biology) ,Population ,biology.organism_classification ,Serow ,Polymorphism (computer science) ,Phylogenetics ,Evolutionary biology ,Genetic structure ,Microsatellite ,Allele ,education ,Ecology, Evolution, Behavior and Systematics - Abstract
Sixteen microsatellite markers were isolated from Formosan serow (Capricornis swinhoei) to compose a new marker set. Analysis of the Formosan serow population in the Taipei zoo yielded a mean number alleles = 6.4 with a range from 3 to 11, and the mean of the effective number of alleles = 3.6 with a range from 2.0 to 6.1. In the marker set, there were 14 markers with high polymorphism (PIC > 0.5), and the average HE and HO over all loci was 0.642 and 0.701, respectively. The results showed that the new marker set was not only highly polymorphic but also powerful in the individual and parentage identification compared to the existing cross-species markers. In conclusion, the markers developed in this study could be applied as molecular tools to investigate the genetic structure or phylogeny of the Formosan serow in the future.
- Published
- 2012
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33. The association of genetic variations in the promoter region of myostatin gene with growth traits in Duroc pigs
- Author
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Ming-Che Wu, Shih-Torng Ding, Jen-Wen Shiau, Pei-Hwa Wang, Po-An Tu, and En-Chung Lin
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medicine.medical_specialty ,biology ,Sus scrofa ,Bioengineering ,Single-nucleotide polymorphism ,Promoter ,Myostatin ,Weight Gain ,Feed conversion ratio ,Eating ,Endocrinology ,Internal medicine ,Genotype ,Genetic variation ,medicine ,biology.protein ,Animals ,Animal Science and Zoology ,Allele ,Promoter Regions, Genetic ,Biotechnology ,Transforming growth factor - Abstract
Average daily gain (ADG) and feed efficiency (FE) are important factors for assessing productivity in farm animals. Myostatin (MSTN), previously called GDF8, is a member of transforming growth factor β (TGFβ) superfamily. It is a negative regulator for both embryonic development and adult homeostasis of skeletal muscle. In this study, the genotypes of MSTN g.435GA and g.447AG SNPs in Duroc pigs were determined. The 435GG/447AA individually had significantly higher ADG (P0.01), body weight at 70 d (P0.05) and 150 d (P0.01), and a lower age at 110 kg (P0.01) than 435AA/447GG individuals. Dose dependent genetic additive effects were found for the negative effects of the 435A/447 G allele for ADG and body weight on 70 d and 150 d. The 435A/447 G allele also increased the age at 110 kg about 1.47 and 4.53% for 1 and 2 copies, respectively. The MSTN 435 G/447A allele increased the age at 110 kg about 1.41 and 4.47% for 1 and 2 copies, respectively. Overall, the two mutated MSTN 435A/447G allele had negative effects on ADG (P0.01), body weight at 70 d (P0.05), and 150 d (P0.001) and increased the age at 110 kg (P0.001). The present study provided evidence that MSTN g.435GA and g.447AG affected growth in Duroc pigs. The effects of the mutated alleles were additive with the maximal effects resulting from two copies of the wild-type allele. Selection for the 435 G/447A allele is expected to increase ADG, body weight and decrease the age at 110 kg in Duroc pigs and might be used in porcine breeding programs.
- Published
- 2012
34. INVESTIGATION OF GENETIC RELATIONSHIPS AMONG TAIWAN BLACK PIGS AND OTHER PIG BREEDS IN TAIWAN BASED ON MICROSATELLITE MARKERS
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Pei-Hwa Wang, C. Y. L. Chyr, C. C. Chien, Y. C. Leu, Y. C. Chen, Jih-Tay Hsu, C. H. Chen, Der-Yuh Lin, En-Chung Lin, Génétique Animale et Biologie Intégrative (GABI), Institut National de la Recherche Agronomique (INRA)-AgroParisTech, Dept Anim Sci & Technol, Natl Taiwan Univ, Dept Anim Breeding, Livestock Research Institute, Council of Agriculture, Dept Anim Ind, Livestock Ind Sect, Council of agriculture, and Council of Agriculture in Taiwan [98AM-04.05-AD-08(3), 99AM-04.05-AD-01]
- Subjects
[SDV.SA]Life Sciences [q-bio]/Agricultural sciences ,Microsatellite markers ,Genetic relationship ,Sus scrofa ,Taiwan ,DIVERSITY ,Bioengineering ,Biology ,Taiwan black pigs ,LINKAGE MAP ,03 medical and health sciences ,NUMBER ,Black hair ,Genetic variation ,Animals ,Cluster Analysis ,Allele ,Phylogeny ,030304 developmental biology ,Genetics ,0303 health sciences ,Genetic diversity ,Pig ,0402 animal and dairy science ,Genetic Variation ,04 agricultural and veterinary sciences ,040201 dairy & animal science ,HARDY-WEINBERG ,MULTIPLE ALLELES ,DISTANCE ,Microsatellite ,POPULATIONS ,Animal Science and Zoology ,Inbreeding ,Purebred ,Microsatellite Repeats ,Biotechnology - Abstract
The aim of this study was to investigate the genetic relationships between Taiwan black pigs (TBP) and other pig breeds by means of 15 fluorescent-labeled microsatellite markers. DNA from a total of 299 TBP from eight private farms and 234 purebred pigs representing six breeds and one synthetic line was used. Among the 15 microsatellite loci, polymorphism information content (PIC) values were all above 0.500; the numbers of observed alleles were all greater than the numbers of effective alleles (10.1 vs. 4.3 in averages). But 13 of the 15 microsatellite markers significantly deviated from the Hardy-Weinberg equilibrium (HWE); moreover, 13 of the 15 tested populations also deviated from the HWE. The inbreeding coefficient (F(IS)) indicated that two TBP populations (TBP-3 and TBP-4) had heterozygote deficiency (P < 0.01). The pair-wise F(ST), representing the genetic diversity between the two populations, ranged from 0.0332 to 0.3809. Meishan and Taoyuan breeds with black hair were previously considered closely related to TBP; however, the result of genetic relationship refuted this assumption. In conclusion, TBP is more similar to the European than Chinese breeds, and further investigations will need to clarify it more accurately.
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- 2012
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35. Docosahexaenoic acid suppresses the expression of FoxO and its target genes
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Chih-Chien Chen, Li-Ru Liu, Shau-Ping Lin, Yu-Hsiang Yu, Ya-Chin Wang, Pei-Hwa Wang, Harry J. Mersmann, Shih-Torng Ding, Tsai-Kun Li, Fang-Ying Chang, and Yu Jen Chen
- Subjects
Male ,Very low-density lipoprotein ,medicine.medical_specialty ,Carcinoma, Hepatocellular ,Docosahexaenoic Acids ,Swine ,Endocrinology, Diabetes and Metabolism ,Clinical Biochemistry ,Adipose tissue ,FOXO1 ,Biology ,Carbohydrate metabolism ,Real-Time Polymerase Chain Reaction ,Biochemistry ,chemistry.chemical_compound ,Internal medicine ,Cell Line, Tumor ,medicine ,Adipocytes ,Glucose homeostasis ,Animals ,Humans ,Molecular Biology ,Triglycerides ,chemistry.chemical_classification ,Nutrition and Dietetics ,Cholesterol ,Forkhead Box Protein O1 ,Forkhead Box Protein O3 ,Liver Neoplasms ,food and beverages ,Forkhead Transcription Factors ,Lipid Metabolism ,Endocrinology ,Glucose ,chemistry ,Adipose Tissue ,Gene Expression Regulation ,Liver ,Docosahexaenoic acid ,Dietary Supplements ,lipids (amino acids, peptides, and proteins) ,Female ,Polyunsaturated fatty acid - Abstract
Docosahexaenoic acid (DHA), an n-3 polyunsaturated fatty acid, has previously been shown to ameliorate obesity-associated metabolic syndrome. To decipher the mechanism responsible for the beneficial effects of DHA on energy/glucose homeostasis and the metabolic syndrome, 30 weaned cross-bred pigs were randomly assigned to three groups and fed ad libitum with a standard diet supplemented with 2% of beef tallow, soybean oil or DHA oil for 30 days, and the gene expression profile of various tissues was evaluated by quantitative real-time polymerase chain reaction. The DHA-supplemented diets reduced the expression of forkhead box O transcription factor (FoxO) 1 and FoxO3 in the liver and adipose tissue. DHA treatments also decreased the expression of FoxO1 and FoxO3 in human hepatoma cells, SK-HEP-1 and human and porcine primary adipocytes. In addition, DHA also down-regulated FoxO target genes, such as microsomal triacylglycerol transfer protein (MTP), glucose-6-phosphatase, apolipoprotein C-III (apoC-III) and insulin-like growth factor binding-protein 1 in the liver, as well as reduced total plasma levels of cholesterol and triacylglycerol in the pig. Transcriptional suppression of FoxO1, FoxO3, apoC-III and MTP by DHA was further confirmed by reporter assays with each promoter construct. Taken together, our study indicates that DHA modulates lipid and glucose homeostasis in part by down-regulating FoxO function. The down-regulation of genes associated with triacylglycerol metabolism and very low density lipoprotein assembly is likely to contribute to the beneficial effects of DHA on the metabolic syndrome.
- Published
- 2011
36. Effects of aqueous extracts of 'Betel quid' and its constituents on testosterone production by dispersed mouse interstitial cells
- Author
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Leang-Shin Wu, Jen-Hsou Lin, Pei-Hwa Wang, De-Shien Jong, Nai-Yen Jack Yang, and Krishna Kaphle
- Subjects
Male ,Arecoline ,Catechu ,Cholinergic Agonists ,Immunoenzyme Techniques ,chemistry.chemical_compound ,Mice ,medicine ,Cyclic AMP ,Animals ,Nuts ,Cyclic adenosine monophosphate ,Testosterone ,Acacia catechu ,Areca ,Piper ,Mice, Inbred ICR ,biology ,Traditional medicine ,Dose-Response Relationship, Drug ,Leydig Cells ,General Medicine ,biology.organism_classification ,Dose–response relationship ,Complementary and alternative medicine ,Biochemistry ,chemistry ,medicine.drug ,Drugs, Chinese Herbal - Abstract
Betel quid (BQ) is a favorite chewing item among many communities in different parts of Asia where it is popular by different names. BQ is a unique combination of nut or fruit from the Areca catechu Linn. (AN) tree, leaf from the Piper betle Linn. (BL) vine, slaked lime, paste of bark from the Acacia catechu tree and other spices. AN has been used successfully in various traditional medicines by different civilizations over several ages. Initially condemned by the medical communities for its health hazards, identification and application of potent pharmacologically bioactive compounds from different constituents of BQ have rekindled growing interest in related investigations. Curious about the stimulating role of BQ, we investigated the potential steroidogenic activity of hot water extract from BQ and its constituents and arecoline on testosterone producing ability in an in vitro experiment. Enzyme dissociated interstitial cells from adult mouse testes (ICR strain) were cultured with/without different doses of the extracts and the level of testosterone produced was assayed by an enzyme immunoassay (EIA) technique. It was found that at lower doses of arecoline, AN and BL extracts had significantly stimulated testosterone production over the basal level (p
- Published
- 2005
37. Efficient SNP Discovery by Combining Microarray and Lab-on-a-Chip Data for Animal Breeding and Selection.
- Author
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Chao-Wei Huang, Yu-Tsung Lin, Shih-Torng Ding, Ling-Ling Lo, Pei-Hwa Wang, En-Chung Lin, Fang-Wei Liu, and Yen-Wen Lu
- Subjects
SINGLE nucleotide polymorphisms ,ANIMAL breeding ,LABS on a chip - Abstract
The genetic markers associated with economic traits have been widely explored for animal breeding. Among these markers, single-nucleotide polymorphism (SNPs) are gradually becoming a prevalent and effective evaluation tool. Since SNPs only focus on the genetic sequences of interest, it thereby reduces the evaluation time and cost. Compared to traditional approaches, SNP genotyping techniques incorporate informative genetic background, improve the breeding prediction accuracy and acquiesce breeding quality on the farm. This article therefore reviews the typical procedures of animal breeding using SNPs and the current status of related techniques. The associated SNP information and genotyping techniques, including microarray and Lab-on-a-Chip based platforms, along with their potential are highlighted. Examples in pig and poultry with different SNP loci linked to high economic trait values are given. The recommendations for utilizing SNP genotyping in nimal breeding are summarized. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
38. Population structure and phylogenetic analysis of laboratory rabbits in Taiwan based on microsatellite markers
- Author
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Fang-Yu Lai, Shih-Torng Ding, Po-An Tu, R.S. Chen, Der-Yuh Lin, En-Cheng Lin, and Pei-Hwa Wang
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