15 results on '"Pegman, P."'
Search Results
2. Interacting with dementia: The MARIO approach
- Author
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Kouroupetroglou, C., Santorelli, A., Raciti, M., Barrett, E., D'onofrio, Ricciardi, F., Giuliani, F., Greco, A., Sancarlo, D., Mannion, Arlene, Whelan, S., Pegman, P., Koumpis, A., Reforgiato Recupero, D., Kouroupetroglou, A., and Horizon 2020
- Subjects
MARIO approach ,dementia - Abstract
This paper presents the results from trials of MARIO interacting with people with dementia (PWD). MARIO aims to help PWD to battle isolation and loneliness by enabling them to stay socially active. In this paper, results from the first trials are presented in terms of acceptability and user interaction with the robot. The research leading to these results has received funding from the European Union Horizons 2020 – the Framework Programme for Research and Innovation (2014-2020) under grant agreement 643808 Project MARIO ‘Managing active and healthy aging with use of caring service robots” non-peer-reviewed
- Published
- 2017
3. Seed dispersal as an ecosystem service by a keystone avian frugivore in New Zealand
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Pegman, Andrew Paul McKenzie
- Abstract
ABSTRACTSeed dispersal service is the proportion of plant species dispersed by a given disperser. It is important since seed dispersal enables colonisation of new habitats, and because movement of seeds even short distances away from trees can reduce vulnerability of seeds and seedlings to disease, predation and density-dependent effects that occur in the immediate vicinity of parent trees. In New Zealand, indigenous large-fruited canopy tree species are susceptible to recruitment failure because Hemiphaga novaeseelandiae(kererū; Columbidae) is the only widespread avian frugivore capable of swallowing large fruit and dispersing their seeds, and its survival relies on ongoing predator control. In view of the critical nature of this mutualism, seed dispersal service was assessed by measuring the difference in composition of seeds of indigenous large-fruited canopy tree species that were dispersed by H. novaeseelandiaetounder the canopies of co-fruiting large-fruited canopy tree species across the Auckland region in New Zealand. If seed dispersal were effective, seeds of all species should be found under the canopies of all tree species, i.e. low beta diversity of seed rain. Beta diversity was higher than expected at two locations, suggesting incomplete seed dispersal service; this pattern was attributed to interactions between frugivore behaviour and the local distribution of fruit. The third location had lower than expected beta diversity, reflecting dispersal of a complete array of tree species’ seeds to sampling sites, plus long-distance dispersal of nonlocal indigenous species of large seeds. Hemiphaga novaeseelandiaeappears to be dispersing an array of species of large seeds between co-fruiting tree species at some Auckland locations. However, incomplete seed dispersal service at two of the locations, together with evidence of low recruitment of some species of seeds, could eventually reduce tree species diversity.
- Published
- 2020
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4. The Discovery and Hit-to-Lead Optimization of Tricyclic Sulfonamides as Potent and Efficacious Potentiators of Glycine Receptors.
- Author
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Bregman, Howard, Simard, Jeffrey R., Andrews, Kristin L., Ayube, Shawn, Hao Chen, Gunaydin, Hakan, Guzman-Perez, Angel, Jiali Hu, Liyue Huang, Xin Huang, Krolikowski, Paul H., Lehto, Sonya G., Lewis, Richard T., Michelsen, Klaus, Pegman, Pamela, Plant, Matthew H., Shaffer, Paul L., Teffera, Yohannes, Shuyan Yi, and Maosheng Zhang
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- 2017
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5. Size-based fruit selection by a keystone avian frugivore and effects on seed viability
- Author
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Pegman, Andrew Paul McKenzie, Perry, George L. W., and Clout, Mick N.
- Abstract
ABSTRACTThe non-random selection of fruits by frugivores can affect plant demography by changing the probability of seedling recruitment. We investigated whether the New Zealand pigeon (Hemiphaga novaeseelandiae) exhibits size-based preference of fruit in two indigenous tree species, Vitex lucensand Prumnopitys ferruginea, that have large fleshy diaspores containing single seeds. We also assessed if there was an advantage for seeds that were actively dispersed since birds may select fruits that have viable seeds (although the cue for such selection remains unclear) and whether a combined scarification–deinhibition advantage was conferred on germination due to seed passage through the gut. Using seed length as a proxy for fruit size, we compared the length of passively dispersed fruits in traps with the estimated fruit length of actively dispersed seeds in six trees of each species across three areas in one fruiting season. For both species, actively dispersed seeds were significantly longer than seeds from passively dispersed fruit, suggesting frugivore preference for larger fruit. Seeds from passively dispersed P. ferrugineafruit had significantly higher viability than actively dispersed seeds and there was no measurable scarification–deinhibition effect. For V. lucens, there was no significant difference in viability between actively and passively dispersed seeds and there was a total lack of seed germination in our trial. Our results show a significant preference by H. novaeseelandiaefor larger fruit in both tree species, which was possibly associated with annual fruit production since P. ferrugineatrees that had more fruit produced larger fruit on average. That H. novaeseelandiaeselected longer fruit in our study is consistent with the prediction that birds will prefer larger fruit when beak gape limitation is absent. However, active dispersal of larger seeds may not always be advantageous since passively dispersed intact fruit germinated equally well and may even have had a viability advantage.
- Published
- 2017
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6. Systemic biodistribution and hepatocyte-specific gene editing with CRISPR/Cas9 using hyaluronic acid-based nanoparticles.
- Author
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Francis, Christopher, Wroblewska, Liliana, Pegman, Pamela, and Amiji, Mansoor
- Subjects
GENE delivery techniques ,CRISPRS ,GENE transfection ,GENOME editing ,NANOPARTICLES ,HYALURONIC acid ,MANNOSE - Abstract
The goal of this study was to evaluate hepatocyte-specific gene editing, via systemic administration of hyaluronic acid (HA)-based nanoparticles in naïve CD-1 mice. Using HA-poly(ethylene imine) (HA-PEI) and HA-PEI-mannose nanoparticles with differential mannose density (1X and 2X), we have evaluated systemic biodistribution and hepatocyte-specific delivery using IVIS imaging and flow cytometry. Additionally, we have investigated hepatocyte-specific delivery and transfection of CRISPR/Cas9 gene editing plasmid and eGFP gene payload to integrate at the Rosa26 locus. IVIS imaging showed uptake of HA-PEI nanoparticles primarily by the liver, and with addition of mannose at different concentrations, the nanoparticles showed increased uptake in both the liver and spleen. HA-PEI-mannose nanoparticles showed 55–65% uptake by hepatocytes, along with uptake by resident macrophage regardless of the mannose concentration. One of two gRNA targets showed 15% genome editing and obtained similar results for all three nanoparticle formulations. Cells positive for our gene payload were greatest with HA-PEI-mannose-1X nanoparticles where 16.2% of cells were GFP positive. The results were encouraging as proof of concept for the development of a non-viral biodegradable and biocompatible polymeric delivery system for gene editing specifically targeting hepatocytes upon systemic administration. Hyaluronic acid-poly(ethylene imine) (HA-PEI)-based nanoparticles were formulated with different mannose density for encapsulation and delivery of CRISPR/Cas-9 construct for hepatocyte-specific gene editing. Following biodistribution and hepatocyte-specific payload delivery evaluations, we have evaluated gene editing efficiency following systemic administration. [Display omitted] [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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7. Productivity-decomposition dynamics of Baumea juncea and Gleichenia dicarpa at Kaitoke Swamp, Great Barrier Island, New Zealand
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Pegman, Andrew P. McK. and Ogden, J.
- Abstract
The productivity and decomposition of Baumea juncea and Gleichenia dicarpa were measured at two sites at Kaitoke Swamp, Great Barrier Island, New Zealand, to determine their annual biomass dynamics. These interactions, including resulting peat accumulation, are poorly understood, especially for wetland sedges. Annual productivity and maximum “standing” above-surface and below-surface biomass were measured using sequential harvest plots. Decomposition was determined using recently dead B. juncea culms and G. dicarpa fronds confined in mesh litter bags placed on, above, and below the swamp surface.The annual productivity of B. juncea (c. 1.4 kg m-2) was within worldwide estimates for swamp wetland species, but that of G. dicarpa (c. 0.5 kg m-2) was low. The order of decomposition of B. juncea leaf litter was: surface > above surface > below surface; but in the case of G. dicarpa there were no significant differences. Litter bag mesh size did not affect decomposition processes for either species, indicating that larger decomposer animals probably do not have a significant influence on biomass loss. Peat accumulation was estimated based on observations and measurements of the entrainment process. Baumea juncea and G. dicarpa both had high peat accumulation, with 71.6% (0.99 kg m-2 yr-1) and 42.8% (0.22 kg m-2 yr-1) of the annual production remaining, respectively, after all components had been underground for 5 years. Consequently, only a small amount of the annual production of biomass is lost from both sites.
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- 2006
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8. Productivity-decomposition dynamics of Typha orientalis at Kaitoke Swamp, Great Barrier Island, New Zealand
- Author
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Pegman, Andrew P. McK. and Ogden, J.
- Abstract
The productivity and decomposition of Typha orientalis at Kaitoke Swamp on Great Barrier Island, New Zealand, were measured to determine the annual dynamics of its biomass. These interactions, including peat accumulation under nutrient-rich conditions, are often poorly understood. Annual productivity and maximum “standing” above-surface and below-surface biomass were measured using sequential harvest plots. Decomposition was determined using recently dead T. orientalis leaves in mesh litter bags placed on, above, and below the swamp surface.The annual productivity of T. orientalis (c. 3 kg m-2) is within world-wide estimates for swamp wetland species. The order of decomposition of leaf litter at Kaitoke Swamp is: below surface > surface > above surface. Litter bag mesh size did not affect decomposition processes, indicating that larger decomposer animals probably do not have a significant influence on biomass loss in the site. Peat accumulation was estimated based on observations and measurements of the entrainment process. T. orientalis had low estimated peat accumulation, with 6.5% (0.19 kg m-2 yr1) of the annual production remaining after all components had been underground for 5 years. Consequently a large amount of the annual production of biomass is lost from the site. The ratio of maximum biomass to annual productivity was 2.2, also indicating low biomass accumulation.
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- 2005
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9. Plant succession and dune dynamics on actively prograding dunes, Whatipu Beach, northern New Zealand
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Pegman, Andrew P. McK. and Rapson, G. L.
- Abstract
Whatipu Beach, north Manukau Harbour, Auckland, has prograded episodically over 1.5 centuries. Sand dune vegetation is quantitatively described, and related to successional stage, local environment, and progradation dynamics. Foredunes, with fine, mobile, infertile sand, occupy the most recently prograded areas and are partially vegetated by native species. Instead of a dune slack, a stream which changed course to flow between dune ridges has created wet “sand river” vegetation. Relict fore-dunes and a dune slack persist inland of the sand river, disrupting a lineal spatial sequence, as do rear dune wetlands. Less-mobile grass and shrub communities, derived from Ammophila arenaria dunes, occupy surfaces >50 years old. No climax communities are present. In contrast to spatial analogues, the Whatipu dunes demonstrate how rapidly succession proceeds in response to the formation of new habitat, while freshwater movements generate non-seral sand-river communities. Succession is modified by invading exotics and by the absence of many disturbance-intolerant native shrub species. Coastal progradation rates at Whatipu indicate that shrubland develops within 50 years, suggesting that spatial analogues of dune succession can mis-represent the longevity of early seral stages. These unusual successional patterns on dateable surfaces, and the presence of rare flora and fauna, make Whatipu Beach important for conservation.
- Published
- 2005
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10. P-382: The MARIO European Project – Managing active and healthy aging with use of caring service robots: Aim and design.
- Author
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Sancarlo, D., Giuliani, F., D’Onofrio, G., Casey, D., Dupourque, V., Pegman, G., Trochidis, I., Bleaden, A., Nolfi, S., Messervey, T., Kourou, C., Polian, I., and Greco, A.
- Published
- 2015
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11. 29. Challenging current assumptions about the basis of the surgical relationship with new breast cancer patients.
- Author
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Beesley, Helen, Pegman, Sarah, Holcombe, Christopher, and Salmon, Peter
- Subjects
BREAST cancer patients ,SURGICAL complications ,BREAST cancer surgery ,SURGEONS ,QUESTIONNAIRES ,CANCER research - Published
- 2015
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12. Systemic biodistribution and hepatocyte-specific gene editing with CRISPR/Cas9 using hyaluronic acid-based nanoparticles.
- Author
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Francis C, Wroblewska L, Pegman P, and Amiji M
- Subjects
- Animals, CRISPR-Cas Systems genetics, Hepatocytes, Hyaluronic Acid, Mice, Tissue Distribution, Gene Editing methods, Nanoparticles
- Abstract
The goal of this study was to evaluate hepatocyte-specific gene editing, via systemic administration of hyaluronic acid (HA)-based nanoparticles in naïve CD-1 mice. Using HA-poly(ethylene imine) (HA-PEI) and HA-PEI-mannose nanoparticles with differential mannose density (1X and 2X), we have evaluated systemic biodistribution and hepatocyte-specific delivery using IVIS imaging and flow cytometry. Additionally, we have investigated hepatocyte-specific delivery and transfection of CRISPR/Cas9 gene editing plasmid and eGFP gene payload to integrate at the Rosa26 locus. IVIS imaging showed uptake of HA-PEI nanoparticles primarily by the liver, and with addition of mannose at different concentrations, the nanoparticles showed increased uptake in both the liver and spleen. HA-PEI-mannose nanoparticles showed 55-65% uptake by hepatocytes, along with uptake by resident macrophage regardless of the mannose concentration. One of two gRNA targets showed 15% genome editing and obtained similar results for all three nanoparticle formulations. Cells positive for our gene payload were greatest with HA-PEI-mannose-1X nanoparticles where 16.2% of cells were GFP positive. The results were encouraging as proof of concept for the development of a non-viral biodegradable and biocompatible polymeric delivery system for gene editing specifically targeting hepatocytes upon systemic administration., (Copyright © 2021 Elsevier Inc. All rights reserved.)
- Published
- 2022
- Full Text
- View/download PDF
13. Metabolic engineering of Chinese hamster ovary cells towards reduced biosynthesis and accumulation of novel growth inhibitors in fed-batch cultures.
- Author
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Mulukutla BC, Mitchell J, Geoffroy P, Harrington C, Krishnan M, Kalomeris T, Morris C, Zhang L, Pegman P, and Hiller GW
- Subjects
- Amino Acids genetics, Amino Acids metabolism, Animals, CHO Cells, Cricetinae, Cricetulus, Batch Cell Culture Techniques, Growth Inhibitors biosynthesis, Growth Inhibitors genetics, Metabolic Engineering
- Abstract
Chinese hamster ovary (CHO) cells in fed-batch cultures are known to consume large amounts of nutrients and divert significant portion of them towards the formation of byproducts, some of which, including lactate and ammonia, are known to be growth inhibitory in nature. A major fraction of these inhibitory metabolites are byproducts or intermediates of amino acid catabolism. Limiting the supply of amino acids has been shown to curtail the production of corresponding inhibitory byproducts resulting in enhanced growth and productivities in CHO cell fed-batch cultures (Mulukutla et al., 2017). In the current study, metabolic engineering of CHO cells was undertaken in order to reduce the biosynthesis of these novel growth inhibitors. Phenylalanine-tyrosine (Phe-Tyr) and branched chain amino acid (BCAA) catabolic pathways were engineered as part of this effort. Four genes that encode enzymes in the Phe-Tyr pathway, which were observed to be minimally expressed in CHO cells, were in turn overexpressed. Metabolically engineered cells were prototrophic to tyrosine and had reduced production of the inhibitory byproducts from Phe-Tyr pathway including 3-phenyllactate and 4-hydroxyphenyllactate. In case of BCAA catabolic pathway, branched chain aminotransferase 1 (BCAT1) gene, which encodes the enzyme that catalyzes the first step in the catabolism of BCAAs, was knocked out in CHO cells. Knockout (KO) of BCAT1 function completely eliminated production of inhibitory byproducts from BCAA catabolic pathway, including isovalerate, isobutyrate and 2-methylbutyrate, resulting in significantly enhanced cell growth and productivities in fed-batch cultures. This study is first of its kind to demonstrate that metabolic engineering of essential amino acid metabolism of CHO cells can significantly improve cell culture process performance., (Copyright © 2019 International Metabolic Engineering Society. Published by Elsevier Inc. All rights reserved.)
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- 2019
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14. Antimicrobial Resistance Patterns and Prevalence of blaPER-1 and blaVEB-1 Genes Among ESBL-producing Pseudomonas aeruginosa Isolates in West of Iran.
- Author
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Alikhani MY, Karimi Tabar Z, Mihani F, Kalantar E, Karami P, Sadeghi M, Ahdi Khosroshahi S, and Farajnia S
- Abstract
Background: Pseudomonas aeruginosa is a leading cause of nosocomial infections worldwide. Resistance of P. aeruginosa strains to the broad-spectrum cephalosporins may be caused by extended-spectrum β-lactamases (ESBLs)., Objectives: The aim of this study was to determine the antimicrobial resistance patterns and prevalence of PER-1 and VEB-1 type genes among ESBL producing strains of P. aeruginosa., Material and Methods: A total of 106 P. aeruginosa isolates were collected from two university hospitals in Hamadan, Iran, during a7-month study (2009). The antimicrobial susceptibility of isolates was determined by disc diffusion method and interpreted according to the clinical and laboratory standards institute (CLSI) recommendations. Production of ESBL was determined by combined disk test and presence of PER-1 and VEB-1 type ESBL genes was identified by PCR., Results: The resistance against broad-spectrum cephalosporins and monobactames were: cefepime (97%), cefotaxime (92.5%) ceftazidime (51%), and aztreonam (27%). Ciprofloxacin (91.5%), imipenem (84.9%) and meropenem (82.1%) were the most effective anti-pseudomonas agents in this study. The results revealed that 88.7% of the isolates were multidrug resistant, 58.25% of those were ESBL positive. Sixteen (26.6%), 9 (15%) and 3 (5%) strains among ESBL-producing strains contained blaPER-1, blaVEB and blaPER-1-blaVEB, respectively., Conclusions: This study highlighted the need to establish antimicrobial resistance surveillance networks for P. aeruginosa to determine the appropriate empirical treatment regimens. The high prevalence of multidrug resistance and production of ESBLs in P. aeruginosa isolates confirms the necessity of protocols considering these issues in the hospitals.
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- 2014
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15. Optimised mammalian expression through the coupling of codon adaptation with gene amplification: maximum yields with minimum effort.
- Author
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Kotsopoulou E, Bosteels H, Chim YT, Pegman P, Stephen G, Thornhill SI, Faulkner JD, and Uden M
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- Animals, CHO Cells, Cricetinae, Cricetulus, Gene Dosage, Methotrexate, Open Reading Frames, Recombinant Proteins metabolism, Tetrahydrofolate Dehydrogenase, Codon, Gene Amplification, Recombinant Proteins biosynthesis, Recombinant Proteins genetics
- Abstract
Gene amplification methodologies are frequently employed for the generation of large quantities of recombinant proteins in mammalian cells. Although they usually guarantee very high yields, they are very time consuming. In addition, due to the large genomic re-arrangements that frequently occur with amplification, the resulting high-producing clones can be unstable. We herein describe significant improvements to the dihydrofolate reductase (DHFR)/methotrexate (MTX) based gene amplification methodology typically employed to improve yields of recombinant proteins produced in genetically engineered CHO host cells. We demonstrate substantial synergy when such gene amplification is combined with extremely high codon optimisation strategies. As a result, expression saturation can be achieved rapidly, in as low as 5 nM MTX, with minimal effort and without compromise in final yields achieved., ((c) 2010 Elsevier B.V. All rights reserved.)
- Published
- 2010
- Full Text
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