27,706 results on '"Pease A"'
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2. A determinant formula of the Jones polynomial for a family of braids
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Asaner, Derya, Kumar, Sanjay, Molander, Melody, Pease, Andrew, and Poudel, Anup
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Mathematics - Geometric Topology ,Mathematics - Combinatorics ,57M15 (Primary) 05C70 (Secondary) 05C31, 05C10, 57K14, 57K10 - Abstract
In 2012, Cohen, Dasbach, and Russell presented an algorithm to construct a weighted adjacency matrix for a given knot diagram. In the case of pretzel knots, it is shown that after evaluation, the determinant of the matrix recovers the Jones polynomial. Although the Jones polynomial is known to be #P-hard by Jaeger, Vertigan, and Welsh, this presents a class of knots for which the Jones polynomial can be computed in polynomial time by using the determinant. In this paper, we extend these results by recovering the Jones polynomial as the determinant of a weighted adjacency matrix for certain subfamilies of the braid group. Lastly, we compute the Kauffman polynomial of (2,q) torus knots in polynomial time using the balanced overlaid Tait graphs. This is the first known example of generalizing the methodology of Cohen to a class of quantum invariants which cannot be derived from the HOMFLYPT polynomial.
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- 2024
3. How to Make an Action Better
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Pease, Marilyn and Whitmeyer, Mark
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Economics - Theoretical Economics - Abstract
For two actions in a decision problem, a and b, each of which that produces a state-dependent monetary reward, we study how to robustly make action a more attractive. Action a' improves upon a in this manner if the set of beliefs at which a is preferred to b is a subset of the set of beliefs at which a' is preferred to b, irrespective of the risk-averse agent's utility function (in money). We provide a full characterization of this relation and discuss applications in politics, bilateral trade and insurance.
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- 2024
4. Brain Tumor Segmentation (BraTS) Challenge 2024: Meningioma Radiotherapy Planning Automated Segmentation
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LaBella, Dominic, Schumacher, Katherine, Mix, Michael, Leu, Kevin, McBurney-Lin, Shan, Nedelec, Pierre, Villanueva-Meyer, Javier, Shapey, Jonathan, Vercauteren, Tom, Chia, Kazumi, Al-Salihi, Omar, Leu, Justin, Halasz, Lia, Velichko, Yury, Wang, Chunhao, Kirkpatrick, John, Floyd, Scott, Reitman, Zachary J., Mullikin, Trey, Bagci, Ulas, Sachdev, Sean, Hattangadi-Gluth, Jona A., Seibert, Tyler, Farid, Nikdokht, Puett, Connor, Pease, Matthew W., Shiue, Kevin, Anwar, Syed Muhammad, Faghani, Shahriar, Haider, Muhammad Ammar, Warman, Pranav, Albrecht, Jake, Jakab, András, Moassefi, Mana, Chung, Verena, Aristizabal, Alejandro, Karargyris, Alexandros, Kassem, Hasan, Pati, Sarthak, Sheller, Micah, Huang, Christina, Coley, Aaron, Ghanta, Siddharth, Schneider, Alex, Sharp, Conrad, Saluja, Rachit, Kofler, Florian, Lohmann, Philipp, Vollmuth, Phillipp, Gagnon, Louis, Adewole, Maruf, Li, Hongwei Bran, Kazerooni, Anahita Fathi, Tahon, Nourel Hoda, Anazodo, Udunna, Moawad, Ahmed W., Menze, Bjoern, Linguraru, Marius George, Aboian, Mariam, Wiestler, Benedikt, Baid, Ujjwal, Conte, Gian-Marco, Rauschecker, Andreas M., Nada, Ayman, Abayazeed, Aly H., Huang, Raymond, de Verdier, Maria Correia, Rudie, Jeffrey D., Bakas, Spyridon, and Calabrese, Evan
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Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Artificial Intelligence ,Computer Science - Human-Computer Interaction ,Computer Science - Machine Learning - Abstract
The 2024 Brain Tumor Segmentation Meningioma Radiotherapy (BraTS-MEN-RT) challenge aims to advance automated segmentation algorithms using the largest known multi-institutional dataset of radiotherapy planning brain MRIs with expert-annotated target labels for patients with intact or postoperative meningioma that underwent either conventional external beam radiotherapy or stereotactic radiosurgery. Each case includes a defaced 3D post-contrast T1-weighted radiotherapy planning MRI in its native acquisition space, accompanied by a single-label "target volume" representing the gross tumor volume (GTV) and any at-risk postoperative site. Target volume annotations adhere to established radiotherapy planning protocols, ensuring consistency across cases and institutions. For preoperative meningiomas, the target volume encompasses the entire GTV and associated nodular dural tail, while for postoperative cases, it includes at-risk resection cavity margins as determined by the treating institution. Case annotations were reviewed and approved by expert neuroradiologists and radiation oncologists. Participating teams will develop, containerize, and evaluate automated segmentation models using this comprehensive dataset. Model performance will be assessed using an adapted lesion-wise Dice Similarity Coefficient and the 95% Hausdorff distance. The top-performing teams will be recognized at the Medical Image Computing and Computer Assisted Intervention Conference in October 2024. BraTS-MEN-RT is expected to significantly advance automated radiotherapy planning by enabling precise tumor segmentation and facilitating tailored treatment, ultimately improving patient outcomes., Comment: 14 pages, 9 figures, 1 table
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- 2024
5. The 2024 Brain Tumor Segmentation (BraTS) Challenge: Glioma Segmentation on Post-treatment MRI
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de Verdier, Maria Correia, Saluja, Rachit, Gagnon, Louis, LaBella, Dominic, Baid, Ujjwall, Tahon, Nourel Hoda, Foltyn-Dumitru, Martha, Zhang, Jikai, Alafif, Maram, Baig, Saif, Chang, Ken, D'Anna, Gennaro, Deptula, Lisa, Gupta, Diviya, Haider, Muhammad Ammar, Hussain, Ali, Iv, Michael, Kontzialis, Marinos, Manning, Paul, Moodi, Farzan, Nunes, Teresa, Simon, Aaron, Sollmann, Nico, Vu, David, Adewole, Maruf, Albrecht, Jake, Anazodo, Udunna, Chai, Rongrong, Chung, Verena, Faghani, Shahriar, Farahani, Keyvan, Kazerooni, Anahita Fathi, Iglesias, Eugenio, Kofler, Florian, Li, Hongwei, Linguraru, Marius George, Menze, Bjoern, Moawad, Ahmed W., Velichko, Yury, Wiestler, Benedikt, Altes, Talissa, Basavasagar, Patil, Bendszus, Martin, Brugnara, Gianluca, Cho, Jaeyoung, Dhemesh, Yaseen, Fields, Brandon K. K., Garrett, Filip, Gass, Jaime, Hadjiiski, Lubomir, Hattangadi-Gluth, Jona, Hess, Christopher, Houk, Jessica L., Isufi, Edvin, Layfield, Lester J., Mastorakos, George, Mongan, John, Nedelec, Pierre, Nguyen, Uyen, Oliva, Sebastian, Pease, Matthew W., Rastogi, Aditya, Sinclair, Jason, Smith, Robert X., Sugrue, Leo P., Thacker, Jonathan, Vidic, Igor, Villanueva-Meyer, Javier, White, Nathan S., Aboian, Mariam, Conte, Gian Marco, Dale, Anders, Sabuncu, Mert R., Seibert, Tyler M., Weinberg, Brent, Abayazeed, Aly, Huang, Raymond, Turk, Sevcan, Rauschecker, Andreas M., Farid, Nikdokht, Vollmuth, Philipp, Nada, Ayman, Bakas, Spyridon, Calabrese, Evan, and Rudie, Jeffrey D.
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Computer Science - Computer Vision and Pattern Recognition - Abstract
Gliomas are the most common malignant primary brain tumors in adults and one of the deadliest types of cancer. There are many challenges in treatment and monitoring due to the genetic diversity and high intrinsic heterogeneity in appearance, shape, histology, and treatment response. Treatments include surgery, radiation, and systemic therapies, with magnetic resonance imaging (MRI) playing a key role in treatment planning and post-treatment longitudinal assessment. The 2024 Brain Tumor Segmentation (BraTS) challenge on post-treatment glioma MRI will provide a community standard and benchmark for state-of-the-art automated segmentation models based on the largest expert-annotated post-treatment glioma MRI dataset. Challenge competitors will develop automated segmentation models to predict four distinct tumor sub-regions consisting of enhancing tissue (ET), surrounding non-enhancing T2/fluid-attenuated inversion recovery (FLAIR) hyperintensity (SNFH), non-enhancing tumor core (NETC), and resection cavity (RC). Models will be evaluated on separate validation and test datasets using standardized performance metrics utilized across the BraTS 2024 cluster of challenges, including lesion-wise Dice Similarity Coefficient and Hausdorff Distance. Models developed during this challenge will advance the field of automated MRI segmentation and contribute to their integration into clinical practice, ultimately enhancing patient care., Comment: 10 pages, 4 figures, 1 table
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- 2024
6. Analysis of the BraTS 2023 Intracranial Meningioma Segmentation Challenge
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LaBella, Dominic, Baid, Ujjwal, Khanna, Omaditya, McBurney-Lin, Shan, McLean, Ryan, Nedelec, Pierre, Rashid, Arif, Tahon, Nourel Hoda, Altes, Talissa, Bhalerao, Radhika, Dhemesh, Yaseen, Godfrey, Devon, Hilal, Fathi, Floyd, Scott, Janas, Anastasia, Kazerooni, Anahita Fathi, Kirkpatrick, John, Kent, Collin, Kofler, Florian, Leu, Kevin, Maleki, Nazanin, Menze, Bjoern, Pajot, Maxence, Reitman, Zachary J., Rudie, Jeffrey D., Saluja, Rachit, Velichko, Yury, Wang, Chunhao, Warman, Pranav, Adewole, Maruf, Albrecht, Jake, Anazodo, Udunna, Anwar, Syed Muhammad, Bergquist, Timothy, Chen, Sully Francis, Chung, Verena, Conte, Gian-Marco, Dako, Farouk, Eddy, James, Ezhov, Ivan, Khalili, Nastaran, Iglesias, Juan Eugenio, Jiang, Zhifan, Johanson, Elaine, Van Leemput, Koen, Li, Hongwei Bran, Linguraru, Marius George, Liu, Xinyang, Mahtabfar, Aria, Meier, Zeke, Moawad, Ahmed W., Mongan, John, Piraud, Marie, Shinohara, Russell Takeshi, Wiggins, Walter F., Abayazeed, Aly H., Akinola, Rachel, Jakab, András, Bilello, Michel, de Verdier, Maria Correia, Crivellaro, Priscila, Davatzikos, Christos, Farahani, Keyvan, Freymann, John, Hess, Christopher, Huang, Raymond, Lohmann, Philipp, Moassefi, Mana, Pease, Matthew W., Vollmuth, Phillipp, Sollmann, Nico, Diffley, David, Nandolia, Khanak K., Warren, Daniel I., Hussain, Ali, Fehringer, Pascal, Bronstein, Yulia, Deptula, Lisa, Stein, Evan G., Taherzadeh, Mahsa, de Oliveira, Eduardo Portela, Haughey, Aoife, Kontzialis, Marinos, Saba, Luca, Turner, Benjamin, Brüßeler, Melanie M. T., Ansari, Shehbaz, Gkampenis, Athanasios, Weiss, David Maximilian, Mansour, Aya, Shawali, Islam H., Yordanov, Nikolay, Stein, Joel M., Hourani, Roula, Moshebah, Mohammed Yahya, Abouelatta, Ahmed Magdy, Rizvi, Tanvir, Willms, Klara, Martin, Dann C., Okar, Abdullah, D'Anna, Gennaro, Taha, Ahmed, Sharifi, Yasaman, Faghani, Shahriar, Kite, Dominic, Pinho, Marco, Haider, Muhammad Ammar, Aristizabal, Alejandro, Karargyris, Alexandros, Kassem, Hasan, Pati, Sarthak, Sheller, Micah, Alonso-Basanta, Michelle, Villanueva-Meyer, Javier, Rauschecker, Andreas M., Nada, Ayman, Aboian, Mariam, Flanders, Adam E., Wiestler, Benedikt, Bakas, Spyridon, and Calabrese, Evan
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Electrical Engineering and Systems Science - Image and Video Processing ,Computer Science - Computer Vision and Pattern Recognition ,Computer Science - Machine Learning - Abstract
We describe the design and results from the BraTS 2023 Intracranial Meningioma Segmentation Challenge. The BraTS Meningioma Challenge differed from prior BraTS Glioma challenges in that it focused on meningiomas, which are typically benign extra-axial tumors with diverse radiologic and anatomical presentation and a propensity for multiplicity. Nine participating teams each developed deep-learning automated segmentation models using image data from the largest multi-institutional systematically expert annotated multilabel multi-sequence meningioma MRI dataset to date, which included 1000 training set cases, 141 validation set cases, and 283 hidden test set cases. Each case included T2, T2/FLAIR, T1, and T1Gd brain MRI sequences with associated tumor compartment labels delineating enhancing tumor, non-enhancing tumor, and surrounding non-enhancing T2/FLAIR hyperintensity. Participant automated segmentation models were evaluated and ranked based on a scoring system evaluating lesion-wise metrics including dice similarity coefficient (DSC) and 95% Hausdorff Distance. The top ranked team had a lesion-wise median dice similarity coefficient (DSC) of 0.976, 0.976, and 0.964 for enhancing tumor, tumor core, and whole tumor, respectively and a corresponding average DSC of 0.899, 0.904, and 0.871, respectively. These results serve as state-of-the-art benchmarks for future pre-operative meningioma automated segmentation algorithms. Additionally, we found that 1286 of 1424 cases (90.3%) had at least 1 compartment voxel abutting the edge of the skull-stripped image edge, which requires further investigation into optimal pre-processing face anonymization steps., Comment: 16 pages, 11 tables, 10 figures, MICCAI
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- 2024
7. Long-term occurrence of Chuck-will's-widow (Antrostomus carolinensis) beyond contemporary IUCN range/Ocurrencia a largo plazo de chotacabras Antrostomus carolinensis mas alla del rango contemporaneo de la IUCN
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Metz, Elaine, Pease, Brent S., Benson, Thomas J., Beveroth, Tara A., Esker, Terry, Sierzega, Kevin, and Ward, Michael P.
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Extinction (Biology) -- Protection and preservation ,Endangered species -- Protection and preservation ,Wildlife conservation -- Protection and preservation ,Natural resources -- Protection and preservation ,Biological sciences - Abstract
Effective conservation of wildlife requires current and accurate range maps of a species' distribution. While maintaining these resources can be challenging, especially for poorly documented species, the map is important for scientists, land managers, and decision makers alike. The International Union for the Conservation of Nature (IUCN) Red List of Threatened Species is a leading information source on the global extinction risk status of flora and fauna and provides current range maps for use in wildlife conservation and listing decisions. Chuck-wills-widow (Antrostomus carolinensis), a declining aerial insectivore whose contemporary range includes North and South America, is a near-threatened species according to IUCN, but its range map excludes areas known to support breeding populations. Here we compiled occurrence of Chuck-wills-widow within the state of Illinois across 6 data sources over a 65+ year period to highlight the occurrence of the species throughout the region. Although excluded from the current IUCN range map, we documented 947 occurrences of the species within Illinois since 1957. Through the use of minimum convex polygons (MCP), we report consistent and stable occurrence of Chuck-wills-widow, with the composite MCP ranging across the southern half of the state. Our results suggest that Chuck-wills-widow distribution within Illinois is not a result of recent colonization nor a climatic-induced shift in the species' distribution, but rather likely an underreporting of the species. This research illustrates how nocturnal or otherwise difficult to detect species may be widely underrepresented in public biodiversity databases and, as a result, have several gaps in their IUCN range maps. In addition to eBird and GBIF, we therefore encourage the inclusion of researchers and land managers along the range boundaries in the development of IUCN range maps, as local knowledge may be needed to fully describe the distribution of declining and underrepresented species. Received 22 August 2023. Accepted 17 June 2024. Key words: conservation mapping, extent of occurrence, geographic range, nightjars, species distribution, threatened species. (Spanish)--La conservacion efectiva de la vida silvestre requiere de mapas de rangos de distribucion de especies actuales y precisos. Aunque el mantenimiento de estos recursos puede ser un reto, especialmente para especies poco documentadas, el mapa es importante tanto para cientificos como para administradores de tierras y tomadores de decisiones. La Lista Roja de Especies Amenazadas de la Union Internacional para la Conservacion de la Naturaleza (IUCN) es una fuente de informacion de avanzada en el riesgo global de estatus de riesgo de extincion global de flora y fauna y proporciona mapas de rangos actuales para uso en conservacion de vida silvestre y toma de decisiones en listados. El chotacabras Antrostomus carolinensis, una especie aerea insectivora en declive cuyo rango contemporaneo incluye Norte y Sudamerica, es una especie casi amenazada segun la IUCN pero su mapa de rango de distribucion excluye areas conocidas por tener poblaciones reproductivas. Aqui compilamos registros de presencia de chotacabras Antrostomus carolinensis dentro del estado de Illinois usando 6 fuentes de datos en un periodo de tiempo de mas de 65 anos para resaltar los registros de presencia de la especie en la region. Aunque excluida del mapa de rango actual de la IUCN, documentamos 947 registros de la especie en Illinois desde 1957. A traves del uso de poligonos minimos convexos (MCP), reportamos presencia consistente y estable de chotacabras Antrostomus carolinensis, con el rango compuesto de MCP que cubre la mitad surena del estado. Nuestros resultados sugieren que la distribucion de chotacabras Antrostomus carolinensis en Illinois no es el resultado de colonizacion reciente ni de cambio de distribucion inducido por el cambio climatico, sino que se debe posiblemente a un subreporte de la especie. Esta investigacion ilustra como especies nocturnas o dificiles de detectar por otras razones pueden estar subrepresentadas en bases de datos publicas de biodiversidad y, como resultado, tener faltantes serios en sus mapas de rangos de la IUCN. Ademas de eBird y GBF, instamos a incluir a investigadores y adminostradores de tierras cercanas a los limites de rangos en el desarrollo de los mapas de rango de la IUCN, ya que el conocimiento local puede ser necesario para describir completamente la distribucion de especies en declive o subrepresentadas. Palabras clave: amplitud de presencia, chotacabras, distribucion de especies, especies amenazadas, mapeo de conservacion, rango geografico., Documenting the current range of a species is essential for effective wildlife conservation and management (Franklin 2010, Guisan et al. 2013). This information is vital for scientists, decision makers, and [...]
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- 2024
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8. Minimum effective dose of clemastine in a mouse model of preterm white matter injury
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Odell, Elizabeth P., Jabassini, Nora, Schniedewind, Björn, Pease-Raissi, Sarah E., Frymoyer, Adam, Christians, Uwe, Green, Ari J., Chan, Jonah R., and Ostrem, Bridget E. L.
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- 2024
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9. Artificial intelligence innovations in neurosurgical oncology: a narrative review
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Baker, Clayton R., Pease, Matthew, Sexton, Daniel P., Abumoussa, Andrew, and Chambless, Lola B.
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- 2024
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10. The Adult Experience of Being Diagnosed with Autism Spectrum Disorder: A Qualitative Meta-Synthesis
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Ingrid Kiehl, Ruby Pease, and Corinna Hackmann
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There is a dearth of research into the experience of adult diagnosis of autism spectrum disorder, and targeted research is needed to understand the needs of these adults. The aim of this coproduced review was to assess existing qualitative data on the lived experience of receiving an autism spectrum disorder diagnosis, identify recurring themes, and synthesize them into a visual model representing the journey through diagnosis. Using thematic analysis, we analyzed qualitative data from 24 studies of adult experiences of autism spectrum disorder diagnosis from PsycINFO, Embase, MEDLINE, and CINAHL. Thirty-two "descriptive" themes and three superordinate themes were identified. These themes represented how factors relating to identity and relationships are impacted by the diagnosis of autism spectrum disorder and the role of adaptation and assimilation. While the diagnostic process was confusing and disappointing for many, it often led to a sense of relief and clarity regarding past experiences. It created opportunities to connect with other autistic individuals and to access services, though appropriate supports were widely lacking. Recommendations are made that the diagnosis process explicitly considers needs in relation to: the impact of the diagnosis on identity, interactions with other people, choices regarding disclosure, and whether and how to make informed adaptations.
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- 2024
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11. Safety, in Numbers
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Pease, Marilyn and Whitmeyer, Mark
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Economics - Theoretical Economics - Abstract
We introduce a way to compare actions in decision problems. An action is safer than another if the set of beliefs at which the decision-maker prefers the safer action increases in size (in the set inclusion sense) as the decision-maker becomes more risk averse. We provide a full characterization of this relation and show that it is equivalent to a robust concept of single-crossing. We discuss applications to investment hedging, security design, and game theory.
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- 2023
12. The selection landscape and genetic legacy of ancient Eurasians
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Irving-Pease, Evan K, Refoyo-Martínez, Alba, Barrie, William, Ingason, Andrés, Pearson, Alice, Fischer, Anders, Sjögren, Karl-Göran, Halgren, Alma S, Macleod, Ruairidh, Demeter, Fabrice, Henriksen, Rasmus A, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew H, Speidel, Leo, Stern, Aaron J, Scorrano, Gabriele, Ramsøe, Abigail, Schork, Andrew J, Rosengren, Anders, Zhao, Lei, Kristiansen, Kristian, Iversen, Astrid KN, Fugger, Lars, Sudmant, Peter H, Lawson, Daniel J, Durbin, Richard, Korneliussen, Thorfinn, Werge, Thomas, Allentoft, Morten E, Sikora, Martin, Nielsen, Rasmus, Racimo, Fernando, and Willerslev, Eske
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Biological Sciences ,Genetics ,History ,Heritage and Archaeology ,Human Society ,Archaeology ,Historical Studies ,Anthropology ,Good Health and Well Being ,Humans ,Alzheimer Disease ,Affect ,Alleles ,Agriculture ,Europe ,General Science & Technology - Abstract
The Holocene (beginning around 12,000 years ago) encompassed some of the most significant changes in human evolution, with far-reaching consequences for the dietary, physical and mental health of present-day populations. Using a dataset of more than 1,600 imputed ancient genomes1, we modelled the selection landscape during the transition from hunting and gathering, to farming and pastoralism across West Eurasia. We identify key selection signals related to metabolism, including that selection at the FADS cluster began earlier than previously reported and that selection near the LCT locus predates the emergence of the lactase persistence allele by thousands of years. We also find strong selection in the HLA region, possibly due to increased exposure to pathogens during the Bronze Age. Using ancient individuals to infer local ancestry tracts in over 400,000 samples from the UK Biobank, we identify widespread differences in the distribution of Mesolithic, Neolithic and Bronze Age ancestries across Eurasia. By calculating ancestry-specific polygenic risk scores, we show that height differences between Northern and Southern Europe are associated with differential Steppe ancestry, rather than selection, and that risk alleles for mood-related phenotypes are enriched for Neolithic farmer ancestry, whereas risk alleles for diabetes and Alzheimer's disease are enriched for Western hunter-gatherer ancestry. Our results indicate that ancient selection and migration were large contributors to the distribution of phenotypic diversity in present-day Europeans.
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- 2024
13. Elevated genetic risk for multiple sclerosis emerged in steppe pastoralist populations
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Barrie, William, Yang, Yaoling, Irving-Pease, Evan K, Attfield, Kathrine E, Scorrano, Gabriele, Jensen, Lise Torp, Armen, Angelos P, Dimopoulos, Evangelos Antonios, Stern, Aaron, Refoyo-Martinez, Alba, Pearson, Alice, Ramsøe, Abigail, Gaunitz, Charleen, Demeter, Fabrice, Jørkov, Marie Louise S, Møller, Stig Bermann, Springborg, Bente, Klassen, Lutz, Hyldgård, Inger Marie, Wickmann, Niels, Vinner, Lasse, Korneliussen, Thorfinn Sand, Allentoft, Morten E, Sikora, Martin, Kristiansen, Kristian, Rodriguez, Santiago, Nielsen, Rasmus, Iversen, Astrid KN, Lawson, Daniel J, Fugger, Lars, and Willerslev, Eske
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Biological Sciences ,Genetics ,History ,Heritage and Archaeology ,Archaeology ,Historical Studies ,Neurosciences ,Autoimmune Disease ,Multiple Sclerosis ,Brain Disorders ,Neurodegenerative ,Human Genome ,Aetiology ,2.1 Biological and endogenous factors ,Inflammatory and immune system ,Neurological ,Humans ,Neurodegenerative Diseases ,Cluster Analysis ,Population Density ,Child ,Preschool ,Europe ,General Science & Technology - Abstract
Multiple sclerosis (MS) is a neuro-inflammatory and neurodegenerative disease that is most prevalent in Northern Europe. Although it is known that inherited risk for MS is located within or in close proximity to immune-related genes, it is unknown when, where and how this genetic risk originated1. Here, by using a large ancient genome dataset from the Mesolithic period to the Bronze Age2, along with new Medieval and post-Medieval genomes, we show that the genetic risk for MS rose among pastoralists from the Pontic steppe and was brought into Europe by the Yamnaya-related migration approximately 5,000 years ago. We further show that these MS-associated immunogenetic variants underwent positive selection both within the steppe population and later in Europe, probably driven by pathogenic challenges coinciding with changes in diet, lifestyle and population density. This study highlights the critical importance of the Neolithic period and Bronze Age as determinants of modern immune responses and their subsequent effect on the risk of developing MS in a changing environment.
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- 2024
14. 100 ancient genomes show repeated population turnovers in Neolithic Denmark
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Allentoft, Morten E, Sikora, Martin, Fischer, Anders, Sjögren, Karl-Göran, Ingason, Andrés, Macleod, Ruairidh, Rosengren, Anders, Schulz Paulsson, Bettina, Jørkov, Marie Louise Schjellerup, Novosolov, Maria, Stenderup, Jesper, Price, T Douglas, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Sørensen, Lasse, Nielsen, Poul Otto, Rasmussen, Peter, Jensen, Theis Zetner Trolle, Refoyo-Martínez, Alba, Irving-Pease, Evan K, Barrie, William, Pearson, Alice, Sousa da Mota, Bárbara, Demeter, Fabrice, Henriksen, Rasmus A, Vimala, Tharsika, McColl, Hugh, Vaughn, Andrew, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Johannsen, Niels Nørkjær, Ramsøe, Abigail Daisy, Schork, Andrew Joseph, Ruter, Anthony, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, Brinch Petersen, Erik, Kannegaard, Esben, Hansen, Jesper, Buck Pedersen, Kristoffer, Pedersen, Lisbeth, Klassen, Lutz, Meldgaard, Morten, Johansen, Morten, Uldum, Otto Christian, Lotz, Per, Lysdahl, Per, Bangsgaard, Pernille, Petersen, Peter Vang, Maring, Rikke, Iversen, Rune, Wåhlin, Sidsel, Anker Sørensen, Søren, Andersen, Søren H, Jørgensen, Thomas, Lynnerup, Niels, Lawson, Daniel J, Rasmussen, Simon, Korneliussen, Thorfinn Sand, Kjær, Kurt H, Durbin, Richard, Nielsen, Rasmus, Delaneau, Olivier, Werge, Thomas, Kristiansen, Kristian, and Willerslev, Eske
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Biological Sciences ,Genetics ,History ,Heritage and Archaeology ,Human Society ,Archaeology ,Historical Studies ,Anthropology ,Humans ,Genomics ,Genotype ,Denmark ,Emigrants and Immigrants ,Scandinavians and Nordic People ,General Science & Technology - Abstract
Major migration events in Holocene Eurasia have been characterized genetically at broad regional scales1-4. However, insights into the population dynamics in the contact zones are hampered by a lack of ancient genomic data sampled at high spatiotemporal resolution5-7. Here, to address this, we analysed shotgun-sequenced genomes from 100 skeletons spanning 7,300 years of the Mesolithic period, Neolithic period and Early Bronze Age in Denmark and integrated these with proxies for diet (13C and 15N content), mobility (87Sr/86Sr ratio) and vegetation cover (pollen). We observe that Danish Mesolithic individuals of the Maglemose, Kongemose and Ertebølle cultures form a distinct genetic cluster related to other Western European hunter-gatherers. Despite shifts in material culture they displayed genetic homogeneity from around 10,500 to 5,900 calibrated years before present, when Neolithic farmers with Anatolian-derived ancestry arrived. Although the Neolithic transition was delayed by more than a millennium relative to Central Europe, it was very abrupt and resulted in a population turnover with limited genetic contribution from local hunter-gatherers. The succeeding Neolithic population, associated with the Funnel Beaker culture, persisted for only about 1,000 years before immigrants with eastern Steppe-derived ancestry arrived. This second and equally rapid population replacement gave rise to the Single Grave culture with an ancestry profile more similar to present-day Danes. In our multiproxy dataset, these major demographic events are manifested as parallel shifts in genotype, phenotype, diet and land use.
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- 2024
15. Population genomics of post-glacial western Eurasia
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Allentoft, Morten E, Sikora, Martin, Refoyo-Martínez, Alba, Irving-Pease, Evan K, Fischer, Anders, Barrie, William, Ingason, Andrés, Stenderup, Jesper, Sjögren, Karl-Göran, Pearson, Alice, Sousa da Mota, Bárbara, Schulz Paulsson, Bettina, Halgren, Alma, Macleod, Ruairidh, Jørkov, Marie Louise Schjellerup, Demeter, Fabrice, Sørensen, Lasse, Nielsen, Poul Otto, Henriksen, Rasmus A, Vimala, Tharsika, McColl, Hugh, Margaryan, Ashot, Ilardo, Melissa, Vaughn, Andrew, Fischer Mortensen, Morten, Nielsen, Anne Birgitte, Ulfeldt Hede, Mikkel, Johannsen, Niels Nørkjær, Rasmussen, Peter, Vinner, Lasse, Renaud, Gabriel, Stern, Aaron, Jensen, Theis Zetner Trolle, Scorrano, Gabriele, Schroeder, Hannes, Lysdahl, Per, Ramsøe, Abigail Daisy, Skorobogatov, Andrei, Schork, Andrew Joseph, Rosengren, Anders, Ruter, Anthony, Outram, Alan, Timoshenko, Aleksey A, Buzhilova, Alexandra, Coppa, Alfredo, Zubova, Alisa, Silva, Ana Maria, Hansen, Anders J, Gromov, Andrey, Logvin, Andrey, Gotfredsen, Anne Birgitte, Henning Nielsen, Bjarne, González-Rabanal, Borja, Lalueza-Fox, Carles, McKenzie, Catriona J, Gaunitz, Charleen, Blasco, Concepción, Liesau, Corina, Martinez-Labarga, Cristina, Pozdnyakov, Dmitri V, Cuenca-Solana, David, Lordkipanidze, David O, En’shin, Dmitri, Salazar-García, Domingo C, Price, T Douglas, Borić, Dušan, Kostyleva, Elena, Veselovskaya, Elizaveta V, Usmanova, Emma R, Cappellini, Enrico, Brinch Petersen, Erik, Kannegaard, Esben, Radina, Francesca, Eylem Yediay, Fulya, Duday, Henri, Gutiérrez-Zugasti, Igor, Merts, Ilya, Potekhina, Inna, Shevnina, Irina, Altinkaya, Isin, Guilaine, Jean, Hansen, Jesper, Aura Tortosa, Joan Emili, Zilhão, João, Vega, Jorge, Buck Pedersen, Kristoffer, Tunia, Krzysztof, Zhao, Lei, Mylnikova, Liudmila N, Larsson, Lars, Metz, Laure, Yepiskoposyan, Levon, Pedersen, Lisbeth, Sarti, Lucia, Orlando, Ludovic, Slimak, Ludovic, Klassen, Lutz, Blank, Malou, González-Morales, Manuel, and Silvestrini, Mara
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Biological Sciences ,Genetics ,History ,Heritage and Archaeology ,Human Society ,Historical Studies ,Anthropology ,Biotechnology ,Humans ,Genomics ,Diploidy ,Agriculture ,Europe ,Metagenomics ,General Science & Technology - Abstract
Western Eurasia witnessed several large-scale human migrations during the Holocene1-5. Here, to investigate the cross-continental effects of these migrations, we shotgun-sequenced 317 genomes-mainly from the Mesolithic and Neolithic periods-from across northern and western Eurasia. These were imputed alongside published data to obtain diploid genotypes from more than 1,600 ancient humans. Our analyses revealed a 'great divide' genomic boundary extending from the Black Sea to the Baltic. Mesolithic hunter-gatherers were highly genetically differentiated east and west of this zone, and the effect of the neolithization was equally disparate. Large-scale ancestry shifts occurred in the west as farming was introduced, including near-total replacement of hunter-gatherers in many areas, whereas no substantial ancestry shifts happened east of the zone during the same period. Similarly, relatedness decreased in the west from the Neolithic transition onwards, whereas, east of the Urals, relatedness remained high until around 4,000 BP, consistent with the persistence of localized groups of hunter-gatherers. The boundary dissolved when Yamnaya-related ancestry spread across western Eurasia around 5,000 BP, resulting in a second major turnover that reached most parts of Europe within a 1,000-year span. The genetic origin and fate of the Yamnaya have remained elusive, but we show that hunter-gatherers from the Middle Don region contributed ancestry to them. Yamnaya groups later admixed with individuals associated with the Globular Amphora culture before expanding into Europe. Similar turnovers occurred in western Siberia, where we report new genomic data from a 'Neolithic steppe' cline spanning the Siberian forest steppe to Lake Baikal. These prehistoric migrations had profound and lasting effects on the genetic diversity of Eurasian populations.
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- 2024
16. Supporting parent capacity to manage pain in young children with cancer at home: Co‐design and usability testing of the PainCaRe app
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Lindsay A. Jibb, William Liu, Jennifer N. Stinson, Paul C. Nathan, Julie Chartrand, Nicole M. Alberts, Elham Hashemi, Tatenda Masama, Hannah G. Pease, Lessley B. Torres, Haydee G. Cortes, Susan Kuczynski, Sam Liu, Henry La, and Michelle A. Fortier
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cancer ,co‐design ,mHealth ,pain ,parents ,pediatrics ,Pediatrics ,RJ1-570 - Abstract
Abstract Young children receiving outpatient cancer care are vulnerable to undermanaged pain. App‐based solutions that provide pain treatment advice to parents in real‐time and in all environments may improve access to quality pain care. We used a parent co‐design approach involving iterative rounds of user testing and software modification to develop a usable Pain Caregiver Resource (PainCaRe) real‐time pediatric cancer pain management app. Parents of children (2–11 years) with cancer completed three standardized modules using a PainCaRe prototype. App usability and acceptability were evaluated using the validated System Usability Scale and a thematic analysis of app testing sessions and interviews. Iterative testing sessions were conducted until data saturation. Interview themes were synthesized into action items that guided revisions to PainCaRe and additional testing rounds were conducted as necessary. Twenty‐two parents participated in three testing cycles. Overall, parents described PainCaRe as an acceptable and potentially clinically useful pain management tool. Mean system usability scores were in the acceptable scale range during each testing cycle. Usability issues identified and resolved included those related to software malfunction, complicated app navigation logic, lack of clarity on pain assessment questions, and the need for pain management advice specifically tailored to child developmental stage. Using co‐design methods, the PainCaRe cancer pain management app was successfully refined for its acceptability and utility to parents. Next steps will include a PainCaRe pilot study before evaluating the impact of the app on younger children's pain outcomes in a randomized controlled trial.
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- 2024
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17. Profiles of Exceptionally Talented Students in Science, Technology, Engineering, and Mathematics (STEM): An Exploration Using Q Factor Analysis
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C. June Maker, Randy Pease, and A. Kadir Bahar
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During the Cultivating Diverse Talent in STEM (CDTIS), studies were designed to identify and cultivate talent in potential innovators from low socioeconomic status (SES) and cultural groups underrepresented in the region: American Indian and Hispanic. Comparisons were made between those identified using conventional measures (CI) and those identified using performance assessments of problem solving (PSI) in STEM domains. In this study, using Q Factor Analysis, 43 students clustered on 13 factors, explaining 81.18% of the variance. Factors included high and low achievers; students from diverse groups; and 11 other clusters. Profiles are described and compared with profiles in other studies and theories. Implications for theory and practice include a paradigm shift from gifted child to talent development.
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- 2024
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18. Asian LGBT Non-Citizen Immigrants in California
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Pease, M Valle, Guardado, Rubeen, and Conron, Kerith J.
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Demographics ,people of color ,California ,race ,income ,women ,men ,marriage ,sexual orientation ,gender identity - Published
- 2023
19. Tumor-derived GLI1 promotes remodeling of the immune tumor microenvironment in melanoma
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Giammona, Alessandro, De Vellis, Chiara, Crivaro, Enrica, Maresca, Luisa, Amoriello, Roberta, Ricci, Federica, Anichini, Giulia, Pietrobono, Silvia, Pease, David R., Fernandez-Zapico, Martin E., Ballerini, Clara, and Stecca, Barbara
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- 2024
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20. Development and prospective validation of an artificial intelligence-based smartphone app for rapid intraoperative pituitary adenoma identification
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Bou-Nassif, Rabih, Reiner, Anne S., Pease, Matthew, Bale, Tejus, Cohen, Marc A., Rosenblum, Marc, and Tabar, Viviane
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- 2024
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21. Insights into epileptogenesis from post-traumatic epilepsy
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Pease, Matthew, Gupta, Kunal, Moshé, Solomon L., Correa, Daniel J., Galanopoulou, Aristea S., Okonkwo, David O., Gonzalez-Martinez, Jorge, Shutter, Lori, Diaz-Arrastia, Ramon, and Castellano, James F.
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- 2024
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22. Translating SUMO-K to Higher-Order Set Theory
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Brown, Chad, Pease, Adam, and Urban, Josef
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Computer Science - Artificial Intelligence - Abstract
We describe a translation from a fragment of SUMO (SUMO-K) into higher-order set theory. The translation provides a formal semantics for portions of SUMO which are beyond first-order and which have previously only had an informal interpretation. It also for the first time embeds a large common-sense ontology into a very secure interactive theorem proving system. We further extend our previous work in finding contradictions in SUMO from first order constructs to include a portion of SUMO's higher order constructs. Finally, using the translation, we can create problems that can be proven using higher-order interactive and automated theorem provers. This is tested in several systems and can be used to form a corpus of higher-order common-sense reasoning problems., Comment: 17 pages including references
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- 2023
23. Data management and execution systems for the Rubin Observatory Science Pipelines
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Lust, Nate B., Jenness, Tim, Bosch, James F., Salnikov, Andrei, Pease, Nathan M., Gower, Michelle, Kowalik, Mikolaj, Dubois-Felsmann, Gregory P., Mueller, Fritz, and Schellart, Pim
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Astrophysics - Instrumentation and Methods for Astrophysics ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
We present the Rubin Observatory system for data storage/retrieval and pipelined code execution. The layer for data storage and retrieval is named the Butler. It consists of a relational database, known as the registry, to keep track of metadata and relations, and a system to manage where the data is located, named the datastore. Together these systems create an abstraction layer that science algorithms can be written against. This abstraction layer manages the complexities of the large data volumes expected and allows algorithms to be written independently, yet be tied together automatically into a coherent processing pipeline. This system consists of tools which execute these pipelines by transforming them into execution graphs which contain concrete data stored in the Butler. The pipeline infrastructure is designed to be scalable in nature, allowing execution on environments ranging from a laptop all the way up to multi-facility data centers. This presentation will focus on the data management aspects as well as an overview on the creation of pipelines and the corresponding execution graphs., Comment: 4 pages, submitted to Astronomical Data Analysis Software and Systems XXXII, October 2022
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- 2023
24. Converting the Suggested Upper Merged Ontology to Typed First-order Form
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Pease, Adam
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Computer Science - Artificial Intelligence ,Computer Science - Logic in Computer Science ,F.4.1 ,I.2.4 - Abstract
We describe the translation of the Suggested Upper Merged Ontology (SUMO) to Typed First-order Form (TFF) with level 0 polymorphism. Building on our prior work to create a TPTP FOF translation of SUMO for use in the E and Vampire theorem provers, we detail the transformations required to handle an explicitly typed logic, and express SUMO's type hierarchy for numbers in a manner consistent with its intended semantics and the three numerical classes allowed in TFF. We provide description of the open source code and an example proof in Vampire on the resulting theory., Comment: 32 pages, 33 figures
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- 2023
25. Tumor-derived GLI1 promotes remodeling of the immune tumor microenvironment in melanoma
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Alessandro Giammona, Chiara De Vellis, Enrica Crivaro, Luisa Maresca, Roberta Amoriello, Federica Ricci, Giulia Anichini, Silvia Pietrobono, David R. Pease, Martin E. Fernandez-Zapico, Clara Ballerini, and Barbara Stecca
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Melanoma ,GLI1 ,CX3CL1 ,Immune escape ,Myeloid-derived suppressor cells ,Dendritic cells ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Melanoma progression is based on a close interaction between cancer cells and immune cells in the tumor microenvironment (TME). Thus, a better understanding of the mechanisms controlling TME dynamics and composition will help improve the management of this dismal disease. Work from our and other groups has reported the requirement of an active Hedgehog-GLI (HH-GLI) signaling for melanoma growth and stemness. However, the role of the downstream GLI1 transcription factor in melanoma TME remains largely unexplored. Methods The immune-modulatory activity of GLI1 was evaluated in a syngeneic B16F10 melanoma mouse model assessing immune populations by flow cytometry. Murine polymorphonuclear myeloid-derived suppressor cells (PMN-MDSCs) were differentiated from bone marrow cells and their immunosuppressive ability was assessed by inhibition of T cells. Conditioned media (CM) from GLI1-overexpressing mouse melanoma cells was used to culture PMN-MDSCs, and the effects of CM were evaluated by Transwell invasion assay and T cell inhibition. Cytokine array analysis, qPCR and chromatin immunoprecipitation were performed to explore the regulation of CX3CL1 expression by GLI1. Human monocyte-derived dendritic cells (moDCs) were cultured in CM from GLI1-silenced patient-derived melanoma cells to assess their activation and recruitment. Blocking antibodies anti-CX3CL1, anti-CCL7 and anti-CXCL8 were used for in vitro functional assays. Results Melanoma cell-intrinsic activation of GLI1 promotes changes in the infiltration of immune cells, leading to accumulation of immunosuppressive PMN-MDSCs and regulatory T cells, and to decreased infiltration of dendric cells (DCs), CD8 + and CD4 + T cells in the TME. In addition, we show that ectopic expression of GLI1 in melanoma cells enables PMN-MDSC expansion and recruitment, and increases their ability to inhibit T cells. The chemokine CX3CL1, a direct transcriptional target of GLI1, contributes to PMN-MDSC expansion and recruitment. Finally, silencing of GLI1 in patient-derived melanoma cells promotes the activation of human monocyte-derived dendritic cells (moDCs), increasing cytoskeleton remodeling and invasion ability. This phenotype is partially prevented by blocking the chemokine CCL7, but not CXCL8. Conclusion Our findings highlight the relevance of tumor-derived GLI1 in promoting an immune-suppressive TME, which allows melanoma cells to evade the immune system, and pave the way for the design of new combination treatments targeting GLI1.
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- 2024
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26. Developing and assessing creative scientific talent that is transformational through real engagement in active problem solving (reaps)!
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Maker, C June, Bahar, Kadir, Alfaiz, Fahad S, and Pease, Randy
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- 2022
27. Quitline usage does not improve rates of smoking cessation in orthopaedic trauma patients unless combined with nicotine replacement therapy
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Matuszewski, Paul E., Pease, Tyler, Martin, Jalen A., Joseph, Katherine, and O’Toole, Robert V.
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- 2024
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28. Global crime science: what should we do and with whom should we do it?
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Ignatans, Dainis, Aleksejeva, Ludmila, and Pease, Ken
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- 2023
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29. Early Post-Traumatic Seizures After Severe Traumatic Brain Injury
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Matthew Pease, Jonathan Elmer, Arka N. Mallela, Jorge Gonzalez-Martinez, David O. Okonkwo, Flora Hammond, Sergiu Abramovici, James F. Castellano, and Wesley T. Kerr
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anti-seizure medicine ,early seizures ,epilepsy ,levetiracetam, seizure prophylaxis ,phenytoin ,seizures ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Seizures are common after severe traumatic brain injury (TBI), with rates in the acute period approaching 5% with seizure prophylaxis in historical clinical trials. Post-traumatic seizures (PTS) are divided into categories: immediate PTS occur prior to resuscitation, typically in the field; early PTS occur from resuscitation to 7 days post-trauma; and late PTS occur thereafter. The relationship between immediate and early PTS, as well as their risk factors, are not well studied in modern cohorts. We performed a secondary analysis of a prospective database of severe TBI patients, defined as a post-resuscitation Glasgow Coma Scale ?8, from a single institution. For the 579 patients included, rates of immediate and early PTS were 1.6% and 3.8%, respectively. We were unable to identify any clinical correlates for immediate seizures. In contrast, early PTS were associated with age (odds ratio [OR] 1.5; 95% confidence interval [CI]: 1.1?2.0; p?0.01), hypoxia (3.3, 95% CI: 1.2?8.5; p?=?0.02), and subdural hematoma (SDH) (2.8, 95% CI: 1.0?2.8; p?=?0.04) in multivariable modeling. Patients with early PTS had higher rates of status epilepticus than those with immediate PTS (45% [n?=?10/22] vs. 0% [n?=?0/9]; p?=?0.03). This supports the notion of immediate PTS, which typically occur in the field and may not reliably be deciphered from pathological posturing responses, as an entity distinct from early PTS. Status epilepticus was highly morbid, associated with a 70% mortality rate. Our previously identified markers may help risk-stratify patients who may warrant longer monitoring with continuous electroencephalography to detect and treat early PTS and corresponding status epilepticus risk.
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- 2024
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30. Development and prospective validation of an artificial intelligence-based smartphone app for rapid intraoperative pituitary adenoma identification
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Rabih Bou-Nassif, Anne S. Reiner, Matthew Pease, Tejus Bale, Marc A. Cohen, Marc Rosenblum, and Viviane Tabar
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Medicine - Abstract
Abstract Background Intraoperative pathology consultation plays a crucial role in tumor surgery. The ability to accurately and rapidly distinguish tumor from normal tissue can greatly impact intraoperative surgical oncology management. However, this is dependent on the availability of a specialized pathologist for a reliable diagnosis. We developed and prospectively validated an artificial intelligence-based smartphone app capable of differentiating between pituitary adenoma and normal pituitary gland using stimulated Raman histology, almost instantly. Methods The study consisted of three parts. After data collection (part 1) and development of a deep learning-based smartphone app (part 2), we conducted a prospective study that included 40 consecutive patients with 194 samples to evaluate the app in real-time in a surgical setting (part 3). The smartphone app’s sensitivity, specificity, positive predictive value, and negative predictive value were evaluated by comparing the diagnosis rendered by the app to the ground-truth diagnosis set by a neuropathologist. Results The app exhibits a sensitivity of 96.1% (95% CI: 89.9–99.0%), specificity of 92.7% (95% CI: 74–99.3%), positive predictive value of 98% (95% CI: 92.2–99.8%), and negative predictive value of 86.4% (95% CI: 66.2–96.8%). An external validation of the smartphone app on 40 different adenoma tumors and a total of 191 scanned SRH specimens from a public database shows a sensitivity of 93.7% (95% CI: 89.3–96.7%). Conclusions The app can be readily expanded and repurposed to work on different types of tumors and optical images. Rapid recognition of normal versus tumor tissue during surgery may contribute to improved intraoperative surgical management and oncologic outcomes. In addition to the accelerated pathological assessments during surgery, this platform can be of great benefit in community hospitals and developing countries, where immediate access to a specialized pathologist during surgery is limited.
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- 2024
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31. First Dark Matter Search Results from the LUX-ZEPLIN (LZ) Experiment
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Aalbers, J., Akerib, D. S., Akerlof, C. W., Musalhi, A. K. Al, Alder, F., Alqahtani, A., Alsum, S. K., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Azadi, S., Bailey, A. J., Baker, A., Balajthy, J., Balashov, S., Bang, J., Bargemann, J. W., Barry, M. J., Barthel, J., Bauer, D., Baxter, A., Beattie, K., Belle, J., Beltrame, P., Bensinger, J., Benson, T., Bernard, E. P., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Birrittella, B., Blockinger, G. M., Boast, K. E., Boxer, B., Bramante, R., Brew, C. A. J., Brás, P., Buckley, J. H., Bugaev, V. V., Burdin, S., Busenitz, J. K., Buuck, M., Cabrita, R., Carels, C., Carlsmith, D. L., Carlson, B., Carmona-Benitez, M. C., Cascella, M., Chan, C., Chawla, A., Chen, H., Cherwinka, J. J., Chott, N. I., Cole, A., Coleman, J., Converse, M. V., Cottle, A., Cox, G., Craddock, W. W., Creaner, O., Curran, D., Currie, A., Cutter, J. E., Dahl, C. E., David, A., Davis, J., Davison, T. J. R., Delgaudio, J., Dey, S., de Viveiros, L., Dobi, A., Dobson, J. E. Y., Druszkiewicz, E., Dushkin, A., Edberg, T. K., Edwards, W. R., Elnimr, M. M., Emmet, W. T., Eriksen, S. R., Faham, C. H., Fan, A., Fayer, S., Fearon, N. M., Fiorucci, S., Flaecher, H., Ford, P., Francis, V. B., Fraser, E. D., Fruth, T., Gaitskell, R. J., Gantos, N. J., Garcia, D., Geffre, A., Gehman, V. M., Genovesi, J., Ghag, C., Gibbons, R., Gibson, E., Gilchriese, M. G. D., Gokhale, S., Gomber, B., Green, J., Greenall, A., Greenwood, S., van der Grinten, M. G. D., Gwilliam, C. B., Hall, C. R., Hans, S., Hanzel, K., Harrison, A., Hartigan-O'Connor, E., Haselschwardt, S. J., Hertel, S. A., Heuermann, G., Hjemfelt, C., Hoff, M. D., Holtom, E., Hor, J. Y-K., Horn, M., Huang, D. Q., Hunt, D., Ignarra, C. M., Jacobsen, R. G., Jahangir, O., James, R. S., Jeffery, S. N., Ji, W., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kamdin, K., Kasey, V., Kazkaz, K., Keefner, J., Khaitan, D., Khaleeq, M., Khazov, A., Khurana, I., Kim, Y. D., Kocher, C. D., Kodroff, D., Korley, L., Korolkova, E. V., Kras, J., Kraus, H., Kravitz, S., Krebs, H. J., Kreczko, L., Krikler, B., Kudryavtsev, V. A., Kyre, S., Landerud, B., Leason, E. A., Lee, C., Lee, J., Leonard, D. S., Leonard, R., Lesko, K. T., Levy, C., Li, J., Liao, F. -T., Liao, J., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Liu, R., Liu, X., Liu, Y., Loniewski, C., Lopes, M. I., Asamar, E. Lopez, Paredes, B. López, Lorenzon, W., Lucero, D., Luitz, S., Lyle, J. M., Majewski, P. A., Makkinje, J., Malling, D. C., Manalaysay, A., Manenti, L., Mannino, R. L., Marangou, N., Marzioni, M. F., Maupin, C., McCarthy, M. E., McConnell, C. T., McKinsey, D. N., McLaughlin, J., Meng, Y., Migneault, J., Miller, E. H., Mizrachi, E., Mock, J. A., Monte, A., Monzani, M. E., Morad, J. A., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murdy, M., Murphy, A. St. J., Naim, D., Naylor, A., Nedlik, C., Nehrkorn, C., Neves, F., Nguyen, A., Nikoleyczik, J. A., Nilima, A., O'Dell, J., O'Neill, F. G., O'Sullivan, K., Olcina, I., Olevitch, M. A., Oliver-Mallory, K. C., Orpwood, J., Pagenkopf, D., Pal, S., Palladino, K. J., Palmer, J., Pangilinan, M., Parveen, N., Patton, S. J., Pease, E. K., Penning, B., Pereira, C., Pereira, G., Perry, E., Pershing, T., Peterson, I. B., Piepke, A., Podczerwinski, J., Porzio, D., Powell, S., Preece, R. M., Pushkin, K., Qie, Y., Ratcliff, B. N., Reichenbacher, J., Reichhart, L., Rhyne, C. A., Richards, A., Riffard, Q., Rischbieter, G. R. C., Rodrigues, J. P., Rodriguez, A., Rose, H. J., Rosero, R., Rossiter, P., Rushton, T., Rutherford, G., Rynders, D., Saba, J. S., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Scovell, P. R., Seymour, D., Shaw, S., Shutt, T., Silk, J. J., Silva, C., Sinev, G., Skarpaas, K., Skulski, W., Smith, R., Solmaz, M., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stark, M. R., Stevens, A., Stiegler, T. M., Stifter, K., Studley, R., Suerfu, B., Sumner, T. J., Sutcliffe, P., Swanson, N., Szydagis, M., Tan, M., Taylor, D. J., Taylor, R., Taylor, W. C., Temples, D. J., Tennyson, B. P., Terman, P. A., Thomas, K. J., Tiedt, D. R., Timalsina, M., To, W. H., Tomás, A., Tong, Z., Tovey, D. R., Tranter, J., Trask, M., Tripathi, M., Tronstad, D. R., Tull, C. E., Turner, W., Tvrznikova, L., Utku, U., Va'vra, J., Vacheret, A., Vaitkus, A. C., Verbus, J. R., Voirin, E., Waldron, W. L., Wang, A., Wang, B., Wang, J. J., Wang, W., Wang, Y., Watson, J. R., Webb, R. C., White, A., White, D. T., White, J. T., White, R. G., Whitis, T. J., Williams, M., Wisniewski, W. J., Witherell, M. S., Wolfs, F. L. H., Wolfs, J. D., Woodford, S., Woodward, D., Worm, S. D., Wright, C. J., Xia, Q., Xiang, X., Xiao, Q., Xu, J., Yeh, M., Yin, J., Young, I., Zarzhitsky, P., Zuckerman, A., and Zweig, E. A.
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High Energy Physics - Experiment ,Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
The LUX-ZEPLIN experiment is a dark matter detector centered on a dual-phase xenon time projection chamber operating at the Sanford Underground Research Facility in Lead, South Dakota, USA. This Letter reports results from LUX-ZEPLIN's first search for weakly interacting massive particles (WIMPs) with an exposure of 60~live days using a fiducial mass of 5.5 t. A profile-likelihood ratio analysis shows the data to be consistent with a background-only hypothesis, setting new limits on spin-independent WIMP-nucleon, spin-dependent WIMP-neutron, and spin-dependent WIMP-proton cross sections for WIMP masses above 9 GeV/c$^2$. The most stringent limit is set for spin-independent scattering at 36 GeV/c$^2$, rejecting cross sections above 9.2$\times 10^{-48}$ cm$^2$ at the 90% confidence level., Comment: 9 pages, 8 figures. See https://doi.org/10.1103/PhysRevLett.131.041002 for a data release related to this paper
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- 2022
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32. The Vera C. Rubin Observatory Data Butler and Pipeline Execution System
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Jenness, Tim, Bosch, James F., Lust, Nate B., Pease, Nathan M., Gower, Michelle, Kowalik, Mikolaj, Dubois-Felsmann, Gregory P., Mueller, Fritz, and Schellart, Pim
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Astrophysics - Instrumentation and Methods for Astrophysics ,Computer Science - Distributed, Parallel, and Cluster Computing - Abstract
The Rubin Observatory's Data Butler is designed to allow data file location and file formats to be abstracted away from the people writing the science pipeline algorithms. The Butler works in conjunction with the workflow graph builder to allow pipelines to be constructed from the algorithmic tasks. These pipelines can be executed at scale using object stores and multi-node clusters, or on a laptop using a local file system. The Butler and pipeline system are now in daily use during Rubin construction and early operations., Comment: 14 pages, 3 figures, submitted to Proc SPIE 12189, "Software and Cyberinfrastructure for Astronomy VII", Montreal, CA, July 2022
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- 2022
33. General education teachers' perceptions of the Real Engagement in Active Problem Solving (REAPS) model
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Wu, I-Chen, Pease, Randy, and Maker, C June
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- 2021
34. Building on and extending the characteristics of gifted learners: Implementing the Real Engagement in Active Prrblem Solving (REAPS) teaching model
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Maker, C June and Pease, Randy
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- 2021
35. Sex-biased and parental allele-specific gene regulation by KDM6A
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Ma, Wenxiu, Fang, He, Pease, Nicolas, Filippova, Galina N, Disteche, Christine M, and Berletch, Joel B
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Genetics ,Stem Cell Research - Embryonic - Non-Human ,Congenital Structural Anomalies ,Pediatric ,Stem Cell Research ,Aetiology ,1.1 Normal biological development and functioning ,Underpinning research ,2.1 Biological and endogenous factors ,Abnormalities ,Multiple ,Alleles ,Animals ,Chromatin ,Face ,Female ,Hematologic Diseases ,Histone Demethylases ,Histones ,Humans ,Male ,Mice ,Vestibular Diseases ,Sex biases ,Parent-of-origin ,Allele-specific ,Imprinting ,Gene regulation ,Development ,Epigenetics ,Histone methylation - Abstract
BackgroundKDM6A is a demethylase encoded by a gene with female-biased expression due to escape from X inactivation. Its main role is to facilitate gene expression through removal of the repressive H3K27me3 mark, with evidence of some additional histone demethylase-independent functions. KDM6A mutations have been implicated in congenital disorders such as Kabuki Syndrome, as well as in sex differences in cancer.MethodsKdm6a was knocked out using CRISPR/Cas9 gene editing in F1 male and female mouse embryonic stem cells (ES) derived from reciprocal crosses between C57BL6 x Mus castaneus. Diploid and allelic RNA-seq analyses were done to compare gene expression between wild-type and Kdm6a knockout (KO) clones. The effects of Kdm6a KO on sex-biased gene expression were investigated by comparing gene expression between male and female ES cells. Changes in H3K27me3 enrichment and chromatin accessibility at promoter regions of genes with expression changes were characterized by ChIP-seq and ATAC-seq followed by diploid and allelic analyses.ResultsWe report that Kdm6a KO in male and female embryonic stem (ES) cells derived from F1 hybrid mice cause extensive gene dysregulation, disruption of sex biases, and specific parental allele effects. Among the dysregulated genes are candidate genes that may explain abnormal developmental features of Kabuki syndrome caused by KDM6A mutations in human. Strikingly, Kdm6a knockouts result in a decrease in sex-biased expression and in preferential downregulation of the maternal alleles of a number of genes. Most promoters of dysregulated genes show concordant epigenetic changes including gain of H3K27me3 and loss of chromatin accessibility, but there was less concordance when considering allelic changes.ConclusionsOur study reveals new sex-related roles of KDM6A in the regulation of developmental genes, the maintenance of sex-biased gene expression, and the differential expression of parental alleles.
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- 2022
36. Algorithmic Decision-Making in Difficult Scenarios.
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Christopher B. Rauch, Ursula Addison, Michael W. Floyd, Prateek Goel, Justin Karneeb, Ray Kulhanek, Othalia Larue, David H. Ménager, Mallika Mainali, Matthew Molineaux, Adam Pease, Anik Sen, J. T. Turner, and Rosina Weber
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- 2024
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37. Quantitative analysis of clarification discourse of interpreter-moderate courtroom using a Cantonese-English bilingual corpus
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Cheung-Pease, Jennifer L. F., primary and Pease, Adam, additional
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- 2023
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38. Developing Scientific, Transformational, Eloquent, Artistic, Mathematical, Mechanical, Emotional, Relational, and Social Talents through Problem Solving: A Conceptual, Practical, Evidence-Based Analysis
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Maker, C. June, Pease, Randy, and Zimmerman, Robert H.
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Building on the definition of steamers (a tasty hot milk-infused drink), we defined STEAMMERS as "a blend of diverse talents, going beyond domain-specific to domain-integrated abilities. Like steamers, they have a rich and colorful 'flavor'!" They are passionate about solving problems they and others face by honoring and blending diverse perspectives and disciplines. Gifted children and young people have the potential to become STEAMMERS, making outstanding contributions to themselves, their communities, and their world. The underlying principle is to design learning experiences beyond traditional conceptions of STEM, STEAM, and other similar combinations of disciplines in ways that uncover, ignite, cultivate, and extend these potentials. Using Real Engagement in Active Problem Solving (REAPS), an evidence-based teaching model, enables educators to recognize, cultivate, and extend the talents of the STEAMMERS we need for our future. Here, we present our new concept, describe practices, and give evidence showing how it accomplishes these purposes.
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- 2023
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39. Systematic transcriptomic analysis and temporal modelling of human fibroblast senescence
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R.-L. Scanlan, L. Pease, H. O’Keefe, A. Martinez-Guimera, L. Rasmussen, J. Wordsworth, and D. Shanley
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transcriptomic ,big data ,computational model ,fibroblast ,cellular senescence ,temporal profile ,Geriatrics ,RC952-954.6 - Abstract
Cellular senescence is a diverse phenotype characterised by permanent cell cycle arrest and an associated secretory phenotype (SASP) which includes inflammatory cytokines. Typically, senescent cells are removed by the immune system, but this process becomes dysregulated with age causing senescent cells to accumulate and induce chronic inflammatory signalling. Identifying senescent cells is challenging due to senescence phenotype heterogeneity, and senotherapy often requires a combinatorial approach. Here we systematically collected 119 transcriptomic datasets related to human fibroblasts, forming an online database describing the relevant variables for each study allowing users to filter for variables and genes of interest. Our own analysis of the database identified 28 genes significantly up- or downregulated across four senescence types (DNA damage induced senescence (DDIS), oncogene induced senescence (OIS), replicative senescence, and bystander induced senescence) compared to proliferating controls. We also found gene expression patterns of conventional senescence markers were highly specific and reliable for different senescence inducers, cell lines, and timepoints. Our comprehensive data supported several observations made in existing studies using single datasets, including stronger p53 signalling in DDIS compared to OIS. However, contrary to some early observations, both p16 and p21 mRNA levels rise quickly, depending on senescence type, and persist for at least 8–11 days. Additionally, little evidence was found to support an initial TGFβ-centric SASP. To support our transcriptomic analysis, we computationally modelled temporal protein changes of select core senescence proteins during DDIS and OIS, as well as perform knockdown interventions. We conclude that while universal biomarkers of senescence are difficult to identify, conventional senescence markers follow predictable profiles and construction of a framework for studying senescence could lead to more reproducible data and understanding of senescence heterogeneity.
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- 2024
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40. Isolated injury, Charlson Comorbidity Index, and transfer from another facility are associated with delay in antibiotic administration: a retrospective study of 963 patients with open fractures
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Tyler J. Pease, BS, G. Wells Ducas, BS, Michael L. Raffetto, MD, Andrew C. Bernard, MD, Jalen A. Martin, BA, and Paul E. Matuszewski, MD
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Orthopedic surgery ,RD701-811 - Abstract
Abstract. Purpose:. To identify factors associated with delays in administration and pharmacy and nursing preparation of antibiotics for patients with open fractures. Design:. Retrospective review. Setting:. Level I trauma center. Patients:. Nine hundred sixty-three adults with open fractures administered antibiotics. Main Outcome Measurements:. Delay in antibiotic administration greater than 66 minutes from arrival and significant pharmacy-related and nursing-related delay. Results:. Isolated injury, Charlson Comorbidity Index, and transfer from another facility were associated with delay in antibiotic administration greater than 66 minutes. Injury Severity Score, transfer, and trauma team activation were associated with pharmacy-related or nursing-related delay. Conclusion:. Interventions to reduce antibiotic administration time for open fractures should focus on early identification of open fractures and standardization of antibiotic protocols to ensure timely administration even in complex or resource-scarce care situations. Level of Evidence:. Prognostic level III.
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- 2024
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41. CHAPTER 12 Phylogenetic Analysis under Heterogeneity and Discordance
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Pease, James B., primary and Weinheimer, Ellen I., additional
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- 2023
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42. Explainable Computational Creativity
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Llano, Maria Teresa, d'Inverno, Mark, Yee-King, Matthew, McCormack, Jon, Ilsar, Alon, Pease, Alison, and Colton, Simon
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Computer Science - Human-Computer Interaction ,Computer Science - Artificial Intelligence - Abstract
Human collaboration with systems within the Computational Creativity (CC) field is often restricted to shallow interactions, where the creative processes, of systems and humans alike, are carried out in isolation, without any (or little) intervention from the user, and without any discussion about how the unfolding decisions are taking place. Fruitful co-creation requires a sustained ongoing interaction that can include discussions of ideas, comparisons to previous/other works, incremental improvements and revisions, etc. For these interactions, communication is an intrinsic factor. This means giving a voice to CC systems and enabling two-way communication channels between them and their users so that they can: explain their processes and decisions, support their ideas so that these are given serious consideration by their creative collaborators, and learn from these discussions to further improve their creative processes. For this, we propose a set of design principles for CC systems that aim at supporting greater co-creation and collaboration with their human collaborators.
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- 2022
43. Pelvic Incidence–Lumbar Lordosis Mismatch Is Not Associated with Early Reoperation for Adjacent Segment Disease After Lumbar Fusion
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Younis, Manaf, Ye, Ivan B., Thomson, Alexandra E., Carbone, Jake, Ratanpal, Amit S., Patankar, Aneesh, Smith, Ryan A., Pease, Tyler J., Oster, Brittany, Cavanaugh, Daniel L., Koh, Eugene Y., Bivona, Louis J., Jauregui, Julio J., Gelb, Daniel, and Ludwig, Steven C.
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- 2024
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44. Strength, plasticity, and spin transition of Fe-N compounds in planetary cores
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Pease, Allison, Liu, Jiachao, Lv, Mingda, Xiao, Yuming, Armstrong, Katherine, Popov, Dmitry, Miyagi, Lowell, and Dorfman, Susannah M.
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- 2024
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45. Evaluation of risk prediction scores for adults hospitalized with COVID-19 in a highly-vaccinated population, Aotearoa New Zealand 2022
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Maze, Michael James, Williman, Jonathan, Anstey, Rebekah, Best, Emma, Bhally, Hasan, Bryce, Aliya, Chang, Catherina L., Chen, Kevin, Dummer, Jack, Epton, Michael, Good, William R., Goodson, Jennifer, Grey, Corina, Grimwade, Kate, Hancox, Robert J., Hassan, Redzuan Zarool, Hills, Thomas, Hotu, Sandra, McArthur, Colin, Morpeth, Susan, Murdoch, David R., Pease, Fiona Elizabeth, Pylypchuk, Romana, Raymond, Nigel, Ritchie, Stephen, Ryan, Deborah, Selak, Vanessa, Storer, Malina, Walls, Tony, Webb, Rachel, Wong, Conroy, and Wright, Karen
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- 2024
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46. COVID-19–related hospitalizations among Aotearoa, New Zealand children during the Omicron era of SARS-CoV-2
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Taylor, Amanda, Best, Emma J., Walls, Tony, Webb, Rachel, Bhally, Hasan, Bryce, Aliya, Chang, Cat L., Chen, Kevin, Dummer, Jack, Epton, Michael, Good, William, Goodson, Jennifer, Grey, Corina, Grimwade, Kate, Hancox, Robert J., Hassan, Redzuan Zarool, Hills, Thomas, Hotu, Sandra, McArthur, Colin, Morpeth, Susan, Murdoch, David R, Pease, Fiona, Pylypchuk, Romana, Raymond, Nigel, Ritchie, Stephen, Ryan, Debbie, Selak, Vanessa, Storer, Malina, Williman, Jonathan, Wong, Conroy, Wright, Karen, and Maze, Michael J.
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- 2024
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47. Radiographic fusion and subsidence rates for stand-alone cage versus anterior cage-plate construct in ACDF
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Cohn, Peter, Carbone, Jake, Smith, Ryan A., Pease, Tyler J., Chiu, Anthony K., Ratanpal, Amit, Bruckner, Jacob J., Kung, Justin, Albelo, Fernando, Bivona, Louis J., Jauregui, Julio J., Koh, Eugene Y., Cavanaugh, Daniel L., and Ludwig, Steven C.
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- 2024
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48. The changing epidemiology of traumatic spine injuries: a trends analysis of 26 years of patients at a major level 1 trauma center in the United States
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Chiu, Anthony K., Pease, Tyler J., Prakash, Hans, Oster, Brittany A., Smith, Ryan A., Sahlani, Mario, Ratanpal, Amit S., Amin, Idris, Scalea, Thomas M., Bivona, Louis J., Jauregui, Julio J., Cavanaugh, Daniel L., Koh, Eugene Y., and Ludwig, Steven C.
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- 2024
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49. Cosmogenic production of $^{37}$Ar in the context of the LUX-ZEPLIN experiment
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Aalbers, J., Akerib, D. S., Musalhi, A. K. Al, Alder, F., Alsum, S. K., Amarasinghe, C. S., Ames, A., Anderson, T. J., Angelides, N., Araújo, H. M., Armstrong, J. E., Arthurs, M., Bai, X., Baker, A., Balajthy, J., Balashov, S., Bang, J., Bargemann, J. W., Bauer, D., Baxter, A., Beattie, K., Bernard, E. P., Bhatti, A., Biekert, A., Biesiadzinski, T. P., Birch, H. J., Blockinger, G. M., Bodnia, E., Boxer, B., Brew, C. A. J., Brás, P., Burdin, S., Busenitz, J. K., Buuck, M., Cabrita, R., Carmona-Benitez, M. C., Cascella, M., Chan, C., Chawla, A., Chen, H., Chott, N. I., Cole, A., Converse, M. V., Cottle, A., Cox, G., Creaner, O., Cutter, J. E., Dahl, C. E., David, A., de Viveiros, L., Dobson, J. E. Y., Druszkiewicz, E., Eriksen, S. R., Fan, A., Fayer, S., Fearon, N. M., Fiorucci, S., Flaecher, H., Fraser, E. D., Fruth, T., Gaitskell, R. J., Genovesi, J., Ghag, C., Gibson, E., Gilchriese, M. G. D., Gokhale, S., van der Grinten, M. G. D., Gwilliam, C. B., Hall, C. R., Haselschwardt, S. J., Hertel, S. A., Horn, M., Huang, D. Q., Hunt, D., Ignarra, C. M., Jahangir, O., James, R. S., Ji, W., Johnson, J., Kaboth, A. C., Kamaha, A. C., Kamdin, K., Khaitan, D., Khazov, A., Khurana, I., Kodroff, D., Korley, L., Korolkova, E. V., Kraus, H., Kravitz, S., Kreczko, L., Kudryavtsev, V. A., Leason, E. A., Leonard, D. S., Lesko, K. T., Levy, C., Lee, J., Lin, J., Lindote, A., Linehan, R., Lippincott, W. H., Liu, X., Lopes, M. I., Asamar, E. Lopez, Lopez-Paredes, B., Lorenzon, W., Luitz, S., Majewski, P. A., Manalaysay, A., Manenti, L., Mannino, R. L., Marangou, N., McCarthy, M. E., McKinsey, D. N., McLaughlin, J., Miller, E. H., Mizrachi, E., Monte, A., Monzani, M. E., Morad, J. A., Mendoza, J. D. Morales, Morrison, E., Mount, B. J., Murphy, A. St. J., Naim, D., Naylor, A., Nedlik, C., Nelson, H. N., Neves, F., Nikoleyczik, J. A., Nilima, A., Olcina, I., Oliver-Mallory, K., Pal, S., Palladino, K. J., Palmer, J., Parveen, N., Patton, S. J., Pease, E. K., Penning, B., Pereira, G., Perry, E., Pershing, J., Piepke, A., Porzio, D., Qie, Y., Reichenbacher, J., Rhyne, C. A., Richards, A., Riffard, Q., Riffard, %Q., Rischbieter, G. R. C., Rosero, R., Rossiter, P., Rushton, T., Santone, D., Sazzad, A. B. M. R., Schnee, R. W., Scovell, P. R., Shaw, S., Shutt, T. A., Silk, J. J., Silva, C., Sinev, G., Smith, R., Solmaz, M., Solovov, V. N., Sorensen, P., Soria, J., Stancu, I., Stevens, A., Stifter, K., Suerfu, B., Sumner, T. J., Swanson, N., Szydagis, M., Taylor, W. C., Taylor, R., Temples, D. J., Terman, P. A., Tiedt, D. R., Timalsina, M., To, W. H., Tong, Z., Tovey, D. R., Trask, M., Tripathi, M., Tronstad, D. R., Turner, W., Utku, U., Vaitkus, A., Wang, B., Wang, Y., Wang, J. J., Wang, W., Watson, J. R., Webb, R. C., White, R. G., Whitis, T. J., Williams, M., Wolfs, F. L. H., Woodford, S., Woodward, D., Wright, C. J., Xia, Q., Xiang, X., Xu, J., and Yeh, M.
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High Energy Physics - Experiment ,Astrophysics - Cosmology and Nongalactic Astrophysics ,Astrophysics - Instrumentation and Methods for Astrophysics ,High Energy Physics - Phenomenology - Abstract
We estimate the amount of $^{37}$Ar produced in natural xenon via cosmic ray-induced spallation, an inevitable consequence of the transportation and storage of xenon on the Earth's surface. We then calculate the resulting $^{37}$Ar concentration in a 10-tonne payload~(similar to that of the LUX-ZEPLIN experiment) assuming a representative schedule of xenon purification, storage and delivery to the underground facility. Using the spallation model by Silberberg and Tsao, the sea level production rate of $^{37}$Ar in natural xenon is estimated to be 0.024~atoms/kg/day. Assuming the xenon is successively purified to remove radioactive contaminants in 1-tonne batches at a rate of 1~tonne/month, the average $^{37}$Ar activity after 10~tonnes are purified and transported underground is 0.058--0.090~$\mu$Bq/kg, depending on the degree of argon removal during above-ground purification. Such cosmogenic $^{37}$Ar will appear as a noticeable background in the early science data, while decaying with a 35~day half-life. This newly-noticed production mechanism of $^{37}$Ar should be considered when planning for future liquid xenon-based experiments.
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- 2022
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50. User Feedback on the Use of a Natural Language Processing Application to Screen for Suicide Risk in the Emergency Department
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Pease, James L., Thompson, Devyn, Wright-Berryman, Jennifer, and Campbell, Marci
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- 2023
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