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2. SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time

3. Updating the approaches to define susceptibility and resistance to anti-tuberculosis agents: implications for diagnosis and treatment

4. Benchmarking CRISPR-BP34 for point-of-care melioidosis detection in low-income and middle-income countries: a molecular diagnostics study

5. Antibiotic resistance determination using Enterococcus faecium whole-genome sequences: a diagnostic accuracy study using genotypic and phenotypic data

6. Antimicrobial resistance: a concise update

11. Evidence review and recommendations for the implementation of genomics for antimicrobial resistance surveillance: reports from an international expert group

14. Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes

16. Genomic epidemiology of SARS-CoV-2 in a UK university identifies dynamics of transmission

20. Emergence of methicillin resistance predates the clinical use of antibiotics

21. Evaluating the impact of genomic epidemiology of methicillin-resistant Staphylococcus aureus (MRSA) on hospital infection prevention and control decisions

22. The impact of viral mutations on recognition by SARS-CoV-2 specific T cells

25. Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B.1.1.7: an ecological study

26. Conference report : The first Bacterial Genome Sequencing Pan-European Network Conference

27. Rapid implementation of SARS-CoV-2 sequencing to investigate cases of health-care associated COVID-19: a prospective genomic surveillance study

31. What Makes a Bacterial Species Pathogenic?:Comparative Genomic Analysis of the Genus Leptospira.

32. The mutational landscape of Staphylococcus aureus during colonisation

33. Reconstructing transmission trees for communicable diseases using densely sampled genetic data

34. Competition between Burkholderia pseudomallei and B. thailandensis

38. BurkHostGEN: a study protocol for evaluating variations in the Burkholderia pseudomallei and host genomes associated with melioidosis infection

41. List of Contributors

44. Targeted decolonization to prevent ICU infections.

45. Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus

49. Identification of Circulating Bacterial Antigens by In Vivo Microbial Antigen Discovery

50. Automating the Generation of Antimicrobial Resistance Surveillance Reports: Proof-of-Concept Study Involving Seven Hospitals in Seven Countries

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