1. Diagnostic Utility of RNA-Seq for Evaluation of PD-L1 Expression in Clear Cell Renal Cell Carcinoma
- Author
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Akshaya Ramachandran, Ekaterina Postovalova, Maria Sorokina, Yang Lyu, Jessica H. Brown, James J. Hsieh, Danil Stupichev, Natalia Miheecheva, Krystle Nomie, Alexander Bagaev, and Maria Tsiper
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Alternative methods ,Tumor microenvironment ,business.industry ,Urology ,genetic processes ,RNA-Seq ,medicine.disease ,Immunohistochemistry ,B7-H1 Antigen ,Kidney Neoplasms ,Clear cell renal cell carcinoma ,Oncology ,Renal cell carcinoma ,Tumor Microenvironment ,medicine ,Cancer research ,Humans ,natural sciences ,Pd l1 expression ,business ,Carcinoma, Renal Cell ,Clear cell - Abstract
Although there are immune checkpoint inhibitors (ICIs) available for the treatment of renal cell carcinoma (RCC), the utility of PD-L1 detection by immunohistochemistry (IHC) as a predictive biomarker in clear cell RCC (ccRCC) remains controversial. Nevertheless, alternative methods for PD-L1 detection, such as RNA sequencing (RNA-Seq), may be clinically useful in ccRCC; therefore, we sought to determine the ability of RNA-Seq to accurately and sensitively detect PD-L1 expression across different ccRCC clinical samples in comparison with IHC.Patients with ccRCC (n=127) who received treatment from Washington University in St. Louis between 2018 and 2020 were identified. Tumors from these patients were analyzed using RNA-Seq and IHC.PD-L1 detection by RNA-Seq strongly correlated with IHC (P.001), which was further validated using two independent datasets. Furthermore, RNA-Seq analysis identified an immune-enriched (higher PD-L1 positivity) and an immune-desert (lower PD-L1 positivity) microenvironment of ccRCC, which also correlated with IHC (P.00001).The results demonstrate the ability of RNA-Seq to detect PD-L1 in various ccRCC clinical samples compared to IHC. Ultimately, these findings suggest that PD-L1 detection by RNA-Seq can be further developed to determine the clinical utility of this methodology in ccRCC.
- Published
- 2021
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