68 results on '"Paul R. Hess"'
Search Results
2. A Kmer-based paired-end read de novo assembler and genotyper for canine MHC class I genotyping
- Author
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Yuan Feng, Paul R. Hess, Stephen M. Tompkins, William H. Hildebrand, and Shaying Zhao
- Subjects
Biocomputational method ,Computational bioinformatics ,Genomic analysis ,Science - Abstract
Summary: The major histocompatibility complex class I (MHC-I) genes are highly polymorphic. MHC-I genotyping is required for determining the peptide epitopes available to an individual’s T-cell repertoire. Current genotyping software tools do not work for the dog, due to very limited known canine alleles. To address this, we developed a Kmer-based paired-end read (KPR) de novo assembler and genotyper, which assemble paired-end RNA-seq reads from MHC-I regions into contigs, and then genotype each contig and estimate its expression level. KPR tools outperform other popular software examined in typing new alleles. We used KPR tools to successfully genotype152 dogs from a published dataset. The study discovers 33 putative new alleles, finds dominant alleles in 4 dog breeds, and builds allele diversity and expression landscapes among the 152 dogs. Our software meets a significant need in biomedical research.
- Published
- 2023
- Full Text
- View/download PDF
3. Making the Most of Major Histocompatibility Complex Molecule Multimers: Applications in Type 1 Diabetes
- Author
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Greg S. Gojanovich and Paul R. Hess
- Subjects
Immunologic diseases. Allergy ,RC581-607 - Abstract
Classical major histocompatibility complex (MHC) class I and II molecules present peptides to cognate T-cell receptors on the surface of T lymphocytes. The specificity with which T cells recognize peptide-MHC (pMHC) complexes has allowed for the utilization of recombinant, multimeric pMHC ligands for the study of minute antigen-specific T-cell populations. In type 1 diabetes (T1D), CD8+ cytotoxic T lymphocytes, in conjunction with CD4+ T helper cells, destroy the insulin-producing β cells within the pancreatic islets of Langerhans. Due to the importance of T cells in the progression of T1D, the ability to monitor and therapeutically target diabetogenic clonotypes of T cells provides a critical tool that could result in the amelioration of the disease. By administering pMHC multimers coupled to fluorophores, nanoparticles, or toxic moieties, researchers have demonstrated the ability to enumerate, track, and delete diabetogenic T-cell clonotypes that are, at least in part, responsible for insulitis; some studies even delay or prevent diabetes onset in the murine model of T1D. This paper will provide a brief overview of pMHC multimer usage in defining the role T-cell subsets play in T1D etiology and the therapeutic potential of pMHC for antigen-specific identification and modulation of diabetogenic T cells.
- Published
- 2012
- Full Text
- View/download PDF
4. Doxorubicin for treatment of histiocytic sarcoma in dogs: 31 cases (2003–2017)
- Author
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Rhiannon M, Doka, Steven E, Suter, Michael L, Mastromauro, Ashley L, Bennett, and Paul R, Hess
- Subjects
Dogs ,Treatment Outcome ,General Veterinary ,Doxorubicin ,Animals ,Histiocytic Sarcoma ,Dog Diseases ,Retrospective Studies - Abstract
OBJECTIVE To evaluate the efficacy of doxorubicin for treatment of histiocytic sarcoma (HS) in dogs, whether administered as the sole treatment or as an adjunct to surgery or radiation therapy. ANIMALS 31 client-owned dogs with localized or disseminated HS examined between 2003 and 2017. PROCEDURES Medical records were reviewed retrospectively, and data were collected. The Kaplan-Meier method was used to estimate time-to-progression from the date of first doxorubicin administration and survival time from initial diagnosis. Factors that could be associated with poorer outcomes with doxorubicin treatment were analyzed with log-rank tests. RESULTS The objective response rate (ORR) was 26%. When stratified by disease status, dogs with localized and disseminated forms experienced 43% and 21% ORRs, respectively. Median time to progression after initiating doxorubicin treatment (n = 30 dogs) was 42 days. Median survival time from initial diagnosis to death (n = 29 dogs) was 169 days. Complete responses were obtained in only 2 dogs that had localized disease and received multimodality therapy. CLINICAL RELEVANCE Benefits of doxorubicin administration in canine HS are modest, with a limited ORR and delay in tumor progression, and are comparable to effects attained with other single-agent regimens.
- Published
- 2022
5. Major Histocompatibility Complex Antigens
- Author
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Paul R. Hess
- Published
- 2022
6. High-resolution characterization of the structural features and genetic variation of six feline leukocyte antigen class I loci via single molecule, real-time (SMRT) sequencing
- Author
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Paul R. Hess, Allison N. Dickey, Jennifer C. Holmes, and Elizabeth H. Scholl
- Subjects
0301 basic medicine ,Genetics ,biology ,Pseudogene ,Immunology ,Locus (genetics) ,Amplicon ,Major histocompatibility complex ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Genotype ,biology.protein ,Allele ,Genotyping ,030215 immunology ,Single molecule real time sequencing - Abstract
Of the 12 full-length feline leukocyte antigen class I (FLAI) loci, 3 are presumed to be classical: FLAI-E, FLAI-H, and FLAI-K. As diversity is a class Ia hallmark, multi-allelism is an important surrogate supporting a classical designation, in the absence of direct demonstration of T-cell restriction. Conversely, limited polymorphism at an expressed locus suggests regulation of immune effectors with invariant receptors, and non-classical status. FLAI-A, FLAI-J, FLAI-L, and FLAI-O are putative class Ib genes in cats. For both classes, identifying prevalent variants across outbred populations can illuminate specific genotypes to be prioritized for immune studies, as shared alleles direct shared responses. Since variation is concentrated in exons 2 and 3, which encode the antigen-binding domains, partial-length cloning/sequencing can be used for allele discovery, but is laborious and occasionally ambiguous. Here we develop a targeted approach to FLAI genotyping, using the single-molecule real-time (SMRT) platform, which allows full-length (3.4-kb) reads without assembly. Consensus sequences matched full-length Sanger references. Thirty-one new class Ia genes were found in 17 cats. Alleles segregated strongly by loci, and the origins of formerly difficult-to-assign sequences were resolved. Although not targeted, FLAI-L and FLAI-J, and the pseudogene FLAI-F, were also returned. Eighteen class Ib alleles were identified. Diversity was restricted and outside hypervariable regions. Both class Ib genes were transcriptionally active. Novel alternative splicing of FLAI-L was observed. SMRT sequencing of FLAI amplicons is useful for full-length genotyping at feline class Ia loci. High-throughput sequencing could allow highly accurate allele surveys in large cat cohorts.
- Published
- 2021
7. Cancer subclone detection based on DNA copy number in single cell and spatial omic sequencing data
- Author
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Chi-Yun Wu, Anuja Sathe, Jiazhen Rong, Paul R. Hess, Billy T. Lau, Susan M. Grimes, Hanlee P. Ji, and Nancy R. Zhang
- Abstract
In cancer, somatic mutations such as copy number alterations (CNAs) accumulate during disease progression and lead to functional intra-tumor heterogeneity that can influence the efficacy of cancer therapy. Therefore, studying the functional characteristics and spatial distribution of genetically distinct subclones is crucial to the understanding of tumor evolution and the design of cancer treatment. Here, we present Clonalscope, a method for subclone detection using copy number profiles that can be applied to spatial transcriptomics (ST) data and data from single-cell sequencing platforms such as scRNA-seq and scATAC-seq. Clonalscope implements a nested Chinese restaurant process to identify de novo subclones within one or multiple samples from the same patient. Clonalscope incorporates prior information from paired whole-genome or whole-exome sequencing (WGS/WES) data to achieve more reliable subclone detection and malignant cell labeling. On scRNA-seq and scATAC-seq data from four gastrointestinal tumor samples, Clonalscope successfully labeled malignant cells and identified genetically different subclones, which were validated in detail using matched scDNA-seq data. On ST data from a squamous cell carcinoma and two invasive ductal carcinoma samples, Clonalscope successfully labelled malignant spots, traced subclones between associated datasets, and identified spatially segregated subclones expressing genes associated with drug resistance and survival.
- Published
- 2022
8. Dog leukocyte antigen‐88*034:01 presents nonamer peptides from canine distemper virus hemagglutinin, large polymerase, and matrix proteins
- Author
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Jennifer C. Holmes, Paige S Nemec, and Paul R. Hess
- Subjects
biology ,Canine distemper ,Dog leukocyte antigen ,Immunology ,Hemagglutinin (influenza) ,medicine.disease ,Major histocompatibility complex ,Virology ,Virus ,Epitope ,CTL ,Dogs ,Hemagglutinins ,MHC class I ,Leukocytes ,Genetics ,medicine ,biology.protein ,Animals ,Immunology and Allergy ,Peptides ,Distemper Virus, Canine ,Alleles - Abstract
Canine spontaneous cancers may offer greater fidelity than rodent models in advancing clinical immunotherapies. Boxers in particular are distinguished as study subjects by their popularity, and high incidence of human-relevant cancers. Further, the MHC class I allele DLA-88*034:01, with a known motif, dominates the breed, facilitating discovery of shared CTL responses against mutation-origin neoepitopes by standard prediction methods. We experimentally confirmed the allomorph's binding motif by developing an MHC surface stabilization assay. The assay validated four DLA-88*034:01-presented peptides from canine distemper virus, ubiquitously administered in routine vaccines, for positive controls in future CTL studies. In turn, these viral peptides substantiated motif-based prediction for DLA-88*034:01. The study adds new tools for studying neoepitope-specific CTL in Boxers to foster canine comparative oncology.
- Published
- 2021
9. A Kmer-Based Paired-End Read (KPR) de novo Assembler and Genotyper to Genotype Major Histocompatibility Complex Class I (MHC-I) Alleles for the Dog
- Author
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Yuan Feng, Paul R. Hess, Stephen M. Tompkins, William H. Hildebrand, and Shaying Zhao
- Subjects
History ,Polymers and Plastics ,Business and International Management ,Industrial and Manufacturing Engineering - Published
- 2022
10. Incidence and risk factors associated with development of clinical cardiotoxicity in dogs receiving doxorubicin
- Author
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Briana E. Hallman, Paul R. Hess, Steven E. Suter, Marlene L. Hauck, and Laurel E. Williams
- Subjects
Cardiomyopathy, Dilated ,Male ,medicine.medical_specialty ,Heart Diseases ,medicine.medical_treatment ,Cardiomyopathy ,canine ,macromolecular substances ,Standard Article ,chemotherapy ,Dogs ,Risk Factors ,Neoplasms ,Internal medicine ,polycyclic compounds ,medicine ,Animals ,echocardiography ,Doxorubicin ,Dog Diseases ,Retrospective Studies ,Chemotherapy ,Cardiotoxicity ,Antibiotics, Antineoplastic ,General Veterinary ,Cumulative dose ,business.industry ,Incidence ,organic chemicals ,Incidence (epidemiology) ,Body Weight ,technology, industry, and agriculture ,Retrospective cohort study ,Dilated cardiomyopathy ,medicine.disease ,Standard Articles ,carbohydrates (lipids) ,Oncology ,cardiology ,Cardiology ,Female ,SMALL ANIMAL ,business ,cardiomyopathy ,medicine.drug - Abstract
Background Doxorubicin (DOX) can cause cumulative cardiotoxicity in dogs, but the incidence of clinical cardiotoxicity in dogs receiving DOX has not been determined. Hypothesis/Objectives To determine if the duration of DOX infusion influences the incidence of cardiotoxicity, to characterize the incidence of clinical cardiotoxicity in dogs during or after DOX chemotherapy, and to identify any risk factors associated with cardiotoxicity. Animals Four‐hundred ninety‐four dogs that received at least 1 dose of DOX for the treatment of cancer. Methods Retrospective study of dogs that received DOX from 2006 to 2015. Results Of 494 dogs, 20 (4.0%) developed clinical cardiotoxicity. The duration of DOX infusion was not significantly associated with clinical cardiotoxicity, whereas a higher cumulative dose of DOX, higher body weight, decreases in fractional shortening after 5 doses of DOX, and development of ventricular premature contractions were significantly associated with clinical cardiotoxicity. High‐risk breeds for developing dilated cardiomyopathy had an incidence of 15.4%, whereas low‐risk breeds had an incidence of 3.0%. Conclusions and Clinical Importance Although the duration of DOX infusion did not influence the incidence of cardiotoxicity, premature contractions and decreases in fractional shortening should raise concern for the development of clinical cardiotoxicity. Overall, the incidence of clinical DOX‐induced cardiotoxicity is low, but Boxers and other breeds at high risk for dilated cardiomyopathy may be at an increased risk.
- Published
- 2019
11. Abstract 5042: Reconstructing the spatial evolution of cancer through subclone detection on copy number profiles in tumor sequencing data
- Author
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Chi-Yun Wu, Paul R. Hess, Anuja Sathe, Jiazhen Rong, Billy T. Lau, Susan M. Grimes, Hanlee P. Ji, and Nancy R. Zhang
- Subjects
Cancer Research ,Oncology - Abstract
Cancer results from somatic mutations such as copy number alterations (CNAs) that continue to accumulate during disease progression. These mutations can lead to functional heterogeneity within tumors and can influence the efficacy of cancer therapy. Therefore, studying the functional characteristics and spatial distribution of genetically distinct subclones is crucial to the understanding of tumor evolution and the design of cancer treatment. Here, we present Spatioscope, a method for subclone detection using copy number profiles that can be applied to spatial transcriptomics (ST) data and data from single-cell sequencing platforms such as scRNA-seq, scATAC-seq and scDNA-seq. Spatioscope implements a nested Chinese restaurant process, which mimics the tumor evolutionary process, to identify de novo subclones within one or multiple samples from the same patient. Spatioscope incorporates prior information from paired whole-genome or whole-exome sequencing (WGS/WES) data to achieve more reliable subclone detection and malignant cell labeling. We first applied Spatioscope on ST data from breast cancer, colorectal cancer and squamous cell carcinoma, as well as on scRNA-seq from three primary and metastatic gastrointestinal tumor samples. Spatioscope successfully distinguished malignant cells from stromal cells, and identified genetically distinct subclones which were validated using matched WGS/WES data, pathology annotations, or scDNA-seq data. On ST data, we show that Spatioscope accurately delineates the tumor’s invasive front, allowing for detailed characterization of interactions between stromal cells and malignant cells of different subclonal origins. In previous work, we showed the pervasive occurrence of highly complex subclonal allele-specific copy number alterations, and thus, we extended Spatioscope to identify subclones with different allele-specific copy number profiles. On three gastrointestinal tumor samples with scDNA-seq and two additional scATAC-seq datasets from a basal cell carcinoma and a gastric cancer cell line, Spatioscope successfully reconstructed complex recurrently mutated subclonal copy number regions. This is especially useful for data with sparse signals such as scATAC-seq when matched scDNA-seq data are unavailable. Using Spatioscope, we detected subclones based on copy number profiles in spatial and single cell tumor sequencing, enabling the investigation of the interplay between genome, transcriptome, and spatial environment during tumor evolution. Citation Format: Chi-Yun Wu, Paul R. Hess, Anuja Sathe, Jiazhen Rong, Billy T. Lau, Susan M. Grimes, Hanlee P. Ji, Nancy R. Zhang. Reconstructing the spatial evolution of cancer through subclone detection on copy number profiles in tumor sequencing data [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 5042.
- Published
- 2022
12. The prevalent Boxer MHC class Ia allotype dog leukocyte antigen (DLA)‐88*034:01 preferentially binds nonamer peptides with a defined motif
- Author
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Alexander Kapatos, Jennifer C. Holmes, Paige S. Nemec, and Paul R. Hess
- Subjects
040301 veterinary sciences ,T-Lymphocytes ,Amino Acid Motifs ,Immunology ,Gene Expression ,Peptide ,Major histocompatibility complex ,Epitope ,0403 veterinary science ,Epitopes ,03 medical and health sciences ,Dogs ,0302 clinical medicine ,Antigen ,Antigens, Neoplasm ,Tandem Mass Spectrometry ,MHC class I ,Genetics ,Animals ,Immunology and Allergy ,Amino Acids ,chemistry.chemical_classification ,biology ,Dog leukocyte antigen ,Histocompatibility Antigens Class I ,04 agricultural and veterinary sciences ,Molecular biology ,Allotype ,Amino acid ,chemistry ,biology.protein ,Oligopeptides ,Protein Binding ,030215 immunology - Abstract
Development of effective immunotherapy for chemoresistant malignancies can be advanced by studies in spontaneous cancer models, such as the dog. A crucial first step, T-cell epitope discovery, can be assisted by determination of binding motifs of common dog leukocyte antigen (DLA) class Ia allotypes. Boxers are popular, inbred dogs with increased risks of relevant target cancers and restricted MHC diversity. We sought to identify the motif of DLA-88*034:01, a breed-dominant allotype, to assist peptide prediction from tumor antigens. Mass spectrometry of eluted peptides showed a preference for nonamers with conserved amino acid preferences: basic at position (P)1; hydrophobic at P2; acidic at P4; histidine at P6; and phenylalanine at P9. This data should expedite finding epitopes restricted by this DLA-88 allotype.
- Published
- 2018
13. High-resolution characterization of the structural features and genetic variation of six feline leukocyte antigen class I loci via single molecule, real-time (SMRT) sequencing
- Author
-
Jennifer C, Holmes, Elizabeth H, Scholl, Allison N, Dickey, and Paul R, Hess
- Subjects
Haplotypes ,Histocompatibility Antigens Class I ,Cats ,Animals ,Genes, MHC Class I ,Genetic Variation ,High-Throughput Nucleotide Sequencing ,Exons ,Sequence Analysis, DNA - Abstract
Of the 12 full-length feline leukocyte antigen class I (FLAI) loci, 3 are presumed to be classical: FLAI-E, FLAI-H, and FLAI-K. As diversity is a class Ia hallmark, multi-allelism is an important surrogate supporting a classical designation, in the absence of direct demonstration of T-cell restriction. Conversely, limited polymorphism at an expressed locus suggests regulation of immune effectors with invariant receptors, and non-classical status. FLAI-A, FLAI-J, FLAI-L, and FLAI-O are putative class Ib genes in cats. For both classes, identifying prevalent variants across outbred populations can illuminate specific genotypes to be prioritized for immune studies, as shared alleles direct shared responses. Since variation is concentrated in exons 2 and 3, which encode the antigen-binding domains, partial-length cloning/sequencing can be used for allele discovery, but is laborious and occasionally ambiguous. Here we develop a targeted approach to FLAI genotyping, using the single-molecule real-time (SMRT) platform, which allows full-length (3.4-kb) reads without assembly. Consensus sequences matched full-length Sanger references. Thirty-one new class Ia genes were found in 17 cats. Alleles segregated strongly by loci, and the origins of formerly difficult-to-assign sequences were resolved. Although not targeted, FLAI-L and FLAI-J, and the pseudogene FLAI-F, were also returned. Eighteen class Ib alleles were identified. Diversity was restricted and outside hypervariable regions. Both class Ib genes were transcriptionally active. Novel alternative splicing of FLAI-L was observed. SMRT sequencing of FLAI amplicons is useful for full-length genotyping at feline class Ia loci. High-throughput sequencing could allow highly accurate allele surveys in large cat cohorts.
- Published
- 2020
14. False-negative results in urine benzodiazepine immunoassay screening
- Author
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Ping Wang, Paul R. Hess, Leslie M. Shaw, Michael C. Malone, and Sheng Feng
- Subjects
Drug ,Benzodiazepine ,Chromatography ,medicine.diagnostic_test ,Chemistry ,medicine.drug_class ,media_common.quotation_subject ,Lorazepam ,Urine ,medicine.disease ,Lorazepam glucuronide ,Immunoassay ,mental disorders ,medicine ,Anxiety disorder ,media_common ,medicine.drug - Abstract
A 77-year-old woman with an anxiety disorder was prescribed 0.5 mg bid lorazepam. Urine drug testing results from an immunoassay for benzodiazepine were repeatedly negative. Benzodiazepine liquid chromatography–tandem mass spectrometry method with a hydrolysis step revealed the presence of lorazepam at concentrations ranging from 1135 to 1624 ng/mL. Given that most of the drug is excreted as lorazepam glucuronide and the immunoassay has a cutoff of 602 ng/mL for lorazepam, it is not surprising that the immunoassay did not detect lorazepam glucuronide yielding negative results for this patient.
- Published
- 2020
15. List of contributors
- Author
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Susan M. Abdel-Rahman, Sami Albeiroti, D. Adam Algren, Justin Arnold, Amit Bansal, Adrian Baron, Melissa Beals, Marianne Benyon, Valkal Bhatt, Caren J. Blacker, Geza S. Bodor, Diane M. Boland, Vincent Buggs, Brian Capron, Dean C. Carlow, Amanda Chandler, Michael R. Christian, Uwe Christians, Jennifer M. Colby, Steven W. Cotten, Fiona Couper, Todd Crane, Kristine R. Crews, Saswati Das, Amitava Dasgupta, Brehon Davis, Sarah R. Delaney, Sridevi Devaraj, Mary H. Dudley (retired), Julia E. Esswein, Sheng Feng, Angela M. Ferguson, C. Clinton Frazee, Deborah French, Uttam Garg, Cindy George, Roy G. Gerona, Bruce A. Goldberger, Aaron Guinn, Lindsey J. Haldiman, Ara Hall, Yong Y. Han, Paul R. Hess, Andrea Ho, Tiffany Hollenbeck, Jessica A. Hvozdovich, Gregory Janis, Paul J. Jannetto, Jeffrey Jentzen, Leo Johnson, Kamisha L. Johnson-Davis, Heath A. Jolliff, Patricia M. Jones, Deven Juneja, Erin Kaleta, Amy B. Karger, Jaswinder Kaur, Kathleen A. Kelly, Hema Ketha, Jeff Knoblauch, Mikail Kraft, Matthew D. Krasowski, Robert Krumsick, Patrick B. Kyle, Jennifer A. Lowry, Andrew W. Lyon, Martha E. Lyon, Michael C. Malone, Michael M. Mbughuni, Christopher McCudden, Cornelia McDonald, Stacy E.F. Melanson, Chelsea Milito, Ross J. Miller, Alejandro R. Molinelli, Riley Murphy, Hari Nair, Vijayalakshmi Nandakumar, Prashant Nasa, John D. Nolen, Mushal Noor, John O. Ogunbileje, Anthony O. Okorodudu, Gabor Oroszi, Jayson V. Pagaduan, Wesley Palatnick, Khushbu Patel, Heather A. Paul, Amadeo Pesce, Mark Petersen, Brianna Peterson, Diane C. Peterson, Robert B. Pietak, Zoë Piggott, Bheemraj Ramoo, Alexandra Rapp, Jason L. Robinson, Cecilia M. Rosales, Nicola J. Rutherford-Parker, S.M. Hossein Sadrzadeh, Umar Salimi, Bjoern Schniedewind, Michael Scordo, Jesse Seegmiller, Hila Shaim, Leslie M. Shaw, Devin L. Shrock, Sarah Smiley, Christine L.H. Snozek, Kimia Sobhani, Alina G. Sofronescu, Heather M. Stieglitz, Roger W. Stone, Frederick G. Strathmann, Zengliu Su, Theresa Swift, Marius C. Tarau, Milton Tenenbein, Ruben Thanacoody, Marita Thompson, Stephen L. Thornton, Manoj Tyagi, Hana Vakili, Judith Sebestyen VanSickle, Ping Wang, Milad Webb, Elizabeth Wehner, Darcy Weidemann, Megan Weitzel, Meagan L. Wisniewski, Brian Wright, Fang Wu, Yifei Yang, Kiang-Teck J. Yeo, Paul E. Young, Y. Victoria Zhang, Viktor A. Zherebitskiy, and Yusheng Zhu
- Published
- 2020
16. TAK1 (MAP3K7) signaling regulates hematopoietic stem cells through TNF-dependent and -independent mechanisms.
- Author
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Giichi Takaesu, Maiko Inagaki, Keiyo Takubo, Yuji Mishina, Paul R Hess, Gregg A Dean, Akihiko Yoshimura, Kunihiro Matsumoto, Toshio Suda, and Jun Ninomiya-Tsuji
- Subjects
Medicine ,Science - Abstract
A cytokine/stress signaling kinase Tak1 (Map3k7) deficiency is known to impair hematopoietic progenitor cells. However, the role of TAK1 signaling in the stem cell function of the hematopoietic system is not yet well defined. Here we characterized hematopoietic stem cells (HSCs) harboring deletion of Tak1 and its activators, Tak1 binding proteins 1 and 2 (Tab1 and Tab2) using a competitive transplantation assay in a mouse model. Tak1 single or Tab1/Tab2 double deletions completely eliminated the reconstitution activity of HSCs, whereas Tab1 or Tab2 single deletion did not cause any abnormality. Tak1 single or Tab1/Tab2 double deficient lineage-negative, Sca-1(+), c-Kit(+) (LSK) cells did not proliferate and underwent cell death. We found that Tnfr1 deficiency restored the reconstitution activity of Tak1 deficient bone marrow cells for 6-18 weeks. However, the reconstitution activity of Tak1- and Tnfr1-double deficient bone marrow cells declined over the long term, and the number of phenotypically identified long-term hematopoietic stem cells were diminished. Our results indicate that TAB1- or TAB2-dependent activation of TAK1 is required for maintenance of the hematopoietic system through two mechanisms: one is prevention of TNF-dependent cell death and the other is TNF-independent maintenance of long-term HSC.
- Published
- 2012
- Full Text
- View/download PDF
17. JAK2 V617F-positive acute myeloid leukaemia (AML): a comparison between de novo AML and secondary AML transformed from an underlying myeloproliferative neoplasm. A study from the Bone Marrow Pathology Group
- Author
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Jason Aynardi, Seble Chekol, Robert P. Hasserjian, Elizabeth O. Hexner, Daria V. Babushok, Elizabeth Margolskee, Adam Bagg, Heesun J. Rogers, Paul R. Hess, Eric D. Hsi, Attilio Orazi, Rashmi Manur, and Jennifer J.D. Morrissette
- Subjects
Adult ,Male ,0301 basic medicine ,Pathology ,medicine.medical_specialty ,Biopsy ,Karyotype ,Kaplan-Meier Estimate ,medicine.disease_cause ,03 medical and health sciences ,0302 clinical medicine ,hemic and lymphatic diseases ,Complex Karyotype ,medicine ,Humans ,neoplasms ,Myeloproliferative neoplasm ,Aged ,Retrospective Studies ,Aged, 80 and over ,Mutation ,Myeloproliferative Disorders ,business.industry ,food and beverages ,Induction chemotherapy ,Histology ,Hematology ,DNA Methylation ,Janus Kinase 2 ,Middle Aged ,medicine.disease ,Leukemia, Myeloid, Acute ,Cell Transformation, Neoplastic ,030104 developmental biology ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,DNA methylation ,Female ,Bone marrow ,business ,Megakaryocytes - Abstract
The JAK2 V617F mutation is characteristic of most Philadelphia chromosome-negative myeloproliferative neoplasms (MPNs) and occurs rarely in de novo acute myeloid leukaemia (AML). We sought to characterize AMLs that harbour this mutation and distinguish those that arise de novo (AML-DN) from those that reflect transformation of an underlying MPN (AML-MPN). Forty-five patients with JAK2 V617F-mutated AML were identified; 15 were AML-DN and 30 were AML-MPN. AML-MPN cases were more likely to have splenomegaly (P = 0·02), MPN-like megakaryocytes and higher mean JAK2 V617F VAF at diagnosis (P = 0·04). Mutations involving TET2 were exclusively identified in AML-DN patients. Mutations of genes affecting DNA methylation were more common in AML-DN (P < 0·01). A complex karyotype was more frequent in AML-MPN cases than in AML-DN (P < 0·01), with AML-DN more likely to display a normal karyotype (P = 0·02). Bone marrow histology after recovery from induction chemotherapy in AML-DN cases revealed no morphological evidence of any previously occult MPNs, while this was evident in most of the AML-MPN specimens (P < 0·01). These findings in this largest study of JAK2 V617F-mutated AMLs indicate that AML-DN is distinct from AML-MPN.
- Published
- 2018
18. Oral melphalan for the treatment of relapsed canine lymphoma
- Author
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Paul R. Hess, M. L. Mastromauro, Marlene L. Hauck, and Steven E. Suter
- Subjects
Melphalan ,medicine.medical_specialty ,040301 veterinary sciences ,medicine.medical_treatment ,Gastroenterology ,0403 veterinary science ,03 medical and health sciences ,0302 clinical medicine ,Rescue therapy ,hemic and lymphatic diseases ,Internal medicine ,Medicine ,Adverse effect ,Chemotherapy ,Canine Lymphoma ,General Veterinary ,business.industry ,04 agricultural and veterinary sciences ,medicine.disease ,Surgery ,Lymphoma ,Tolerability ,030220 oncology & carcinogenesis ,Toxicity ,business ,medicine.drug - Abstract
Oral melphalan has been included in multi-agent rescue protocols for canine lymphoma but its activity as a single-agent for this purpose has not been established. Inexpensive cost, ease of administration and tolerability make oral melphalan an attractive candidate for single-agent rescue therapy of canine lymphoma. Retrospective evaluation of 19 cases of relapsed canine lymphoma treated with oral melphalan was performed. Melphalan was primarily administered (n = 16) via a high dose protocol (HDM) with a median dosage of 19.4 mg m-2 . Fifteen dogs (78.9%) were treated concurrently with corticosteroids. Response evaluation was possible for all dogs with a calculated overall clinical benefit (partial response [PR] + stable disease [SD]) of 31.6% (PR 3/19; SD 3/19). Times to progression following melphalan (TTP-M) were 14, 24 and 34 days for responders and 20, 28 and 103 days for dogs experiencing SD. Twelve of 17 dogs evaluable for toxicity experienced an adverse event (AE) with only 3 dogs experiencing a grade III or higher AE. Haematologic toxicity was common (11/17) while gastrointestinal toxicity was rare (1/17). Although treatment resulted in limited clinical benefit and non-durable responses, oral melphalan was well-tolerated and may be a reasonable rescue option in cases where minimal effective agents remain.
- Published
- 2017
19. Canine acute leukaemia: 50 cases (1989-2014)
- Author
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Steven E. Suter, Paul R. Hess, Marlene L. Hauck, A. L. Bennett, C. B. Lanier, M. W. Ferguson, and Laurel E. Williams
- Subjects
Cytopenia ,medicine.medical_specialty ,Chemotherapy ,General Veterinary ,040301 veterinary sciences ,business.industry ,Medical record ,medicine.medical_treatment ,04 agricultural and veterinary sciences ,CHOP ,medicine.disease ,Malignancy ,Surgery ,0403 veterinary science ,03 medical and health sciences ,Haematopoiesis ,0302 clinical medicine ,Immunophenotyping ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Internal medicine ,medicine ,Bone marrow ,business - Abstract
Acute leukaemia (AL) is a bone marrow malignancy of hematopoietic progenitors that historically is poorly responsive to treatment. With the widespread adoption of dose-intense chemotherapy, more human patients attain long-term survivals, but whether comparable progress has been made in canine AL is unknown. To investigate this question, medical records from three academic veterinary hospitals were reviewed. Fifty dogs met the criteria for AL, having excess circulating or marrow blasts, a major cytopenia(s), and no substantial lymphadenopathy. Thirty-six dogs received cytotoxic chemotherapy; 23 achieved a complete or partial response for a median of 56 days (range, 9–218). With failure or relapse, 14 dogs were rescued. Median survival with treatment was poor at 55 days (range, 1–300). Untreated (n = 6) and palliatively-treated (n = 8) dogs lived a median of 7.5 days. Most dogs developed chemoresistance within weeks of initiating treatment, and consequently, survival times for AL remain disappointingly short.
- Published
- 2016
20. Cancer-testis antigens in canine histiocytic sarcoma and other malignancies
- Author
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Jennifer C. Holmes, Alexander Kapatos, Paul R. Hess, Paige S. Nemec, and Devorah M. Stowe
- Subjects
Male ,040301 veterinary sciences ,Biology ,Histiocytic sarcoma ,Epitope ,0403 veterinary science ,03 medical and health sciences ,0302 clinical medicine ,Dogs ,Antigen ,Antigens, Neoplasm ,HLA Antigens ,Tandem Mass Spectrometry ,Canine Histiocytic Sarcoma ,Cell Line, Tumor ,MHC class I ,Testis ,medicine ,Animals ,Humans ,Dog Diseases ,RNA, Messenger ,General Veterinary ,Dog leukocyte antigen ,04 agricultural and veterinary sciences ,medicine.disease ,Lymphoma ,Gene Expression Regulation, Neoplastic ,030220 oncology & carcinogenesis ,Cancer research ,biology.protein ,Cancer/testis antigens ,Histiocytic Sarcoma ,Chromatography, Liquid - Abstract
Cancer-testis antigens (CTAs) are a category of self proteins aberrantly expressed in diverse malignancies, mostly solid tumours, due to epigenetic de-repression. Normally expressed only in fetal or gametogenic tissues, CTAs are tantalizing immunotherapy targets, since autoimmunity risks appear minimal. Few prevalent CTAs have been identified in human hematologic cancers, and just two in their veterinary counterparts. We sought to discover new CTAs in canine hematologic cancers such as histiocytic sarcoma (HS) and lymphoma to foster immunotherapy development. To accomplish this, the ligandome binding the dog leukocyte antigen (DLA)-88*508:01 class I allele overexpressed in an HS line was searched by mass spectrometry to identify possible CTA-derived peptides, which could serve as CD8+ T-cell epitopes. Twenty-two peptides mapped to 5 human CTAs and 12 additional proteins with CTA characteristics. Expression of five promising candidates was then evaluated in tumour and normal tissue by quantitative and end-point RT-PCR. The ortholog of an established CTA, IGF2BP3, had unexpectedly high expression in peripheral blood mononuclear cells (PBMCs). Four other testis-enhanced proteins were also assessed. AKR1E2, SPECC1 and TPX2 were expressed variably in HS and T-cell lymphoma biopsies, but also at high levels in critical tissues, including kidney, brain and marrow, diminishing their utility. A more tissue-restricted candidate, NT5C1B, was detected in T-cell lymphomas, but also at low levels in some normal dog tissues. These results illustrate the feasibility of discovering canine CTAs by a reverse approach, proceeding from identification of MHC class I-presented peptides to a comparative RNA expression survey of tumours and normal tissues.
- Published
- 2018
21. The canine MHC class Ia allele DLA-88*508:01 presents diverse self-and canine distemper virus-origin peptides of varying length that have a conserved binding motif
- Author
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Paul R. Hess, Erik J. Soderblom, Paige S. Nemec, Jennifer C. Holmes, Peter S. Ross, Adam Buntzman, Alexander Kapatos, Keith R. Miller, Edward J. Collins, and Steven E. Suter
- Subjects
0301 basic medicine ,T-Lymphocytes ,Immunology ,Amino Acid Motifs ,Genes, MHC Class I ,Peptide ,Major histocompatibility complex ,Article ,03 medical and health sciences ,Epitopes ,Viral Proteins ,Retrovirus ,Dogs ,MHC class I ,medicine ,Animals ,Distemper Virus, Canine ,Alleles ,chemistry.chemical_classification ,Antigen Presentation ,General Veterinary ,biology ,Canine distemper ,Dog leukocyte antigen ,Histocompatibility Antigens Class I ,biology.organism_classification ,medicine.disease ,Molecular biology ,CTL ,030104 developmental biology ,chemistry ,biology.protein ,Peptides ,CD8 ,Protein Binding - Abstract
Ideally, CD8+ T-cell responses against virally infected or malignant cells are defined at the level of the specific peptide and restricting MHC class I element, a determination not yet made in the dog. To advance the discovery of canine CTL epitopes, we sought to determine whether a putative classical MHC class Ia gene, Dog Leukocyte Antigen (DLA)-88, presents peptides from a viral pathogen, canine distemper virus (CDV). To investigate this possibility, DLA-88*508:01, an allele prevalent in Golden Retrievers, was expressed as a FLAG-tagged construct in canine histiocytic cells to allow affinity purification of peptide-DLA-88 complexes and subsequent elution of bound peptides. Pattern analysis of self peptide sequences, which were determined by liquid chromatography-tandem mass spectrometry (LC-MS/MS), permitted binding preferences to be inferred. DLA-88*508:01 binds peptides that are 9-to-12 amino acids in length, with a modest preference for 9- and 11-mers. Hydrophobic residues are favored at positions 2 and 3, as are K, R or F residues at the C-terminus. Testing motif-matched and -unmatched synthetic peptides via peptide-MHC surface stabilization assay using a DLA-88*508:01-transfected, TAP-deficient RMA-S line supported these conclusions. With CDV infection, 22 viral peptides ranging from 9-to-12 residues in length were identified in DLA-88*508:01 eluates by LC-MS/MS. Combined motif analysis and surface stabilization assay data suggested that 11 of these 22 peptides, derived from CDV fusion, hemagglutinin, large polymerase, matrix, nucleocapsid, phosphoprotein, and V proteins, were processed and presented, and thus, potential targets of anti-viral CTL in DLA-88*508:01-bearing dogs. The presentation of diverse self and viral peptides indicates that DLA-88 is a classical MHC class Ia gene.
- Published
- 2018
22. Lymphatic function is required prenatally for lung inflation at birth
- Author
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David R. Rawnsley, Zoltán Jakus, Celeste M. Nelson, Zhiying Zou, Jason P. Gleghorn, Paul R. Hess, David Enis, Mark L. Kahn, Xi Liu, Stephanie Chia, Aslihan Sen, Susan H. Guttentag, Jisheng Yang, and Yiqing Yang
- Subjects
Pathology ,medicine.medical_specialty ,Fetus ,Lung ,Immunology ,Physiology ,Respiratory physiology ,respiratory system ,Biology ,Pulmonary compliance ,Pulmonary edema ,medicine.disease ,respiratory tract diseases ,medicine.anatomical_structure ,Lymphatic system ,Respiratory failure ,Edema ,medicine ,Immunology and Allergy ,medicine.symptom - Abstract
Mammals must inflate their lungs and breathe within minutes of birth to survive. A key regulator of neonatal lung inflation is pulmonary surfactant, a lipoprotein complex which increases lung compliance by reducing alveolar surface tension (Morgan, 1971). Whether other developmental processes also alter lung mechanics in preparation for birth is unknown. We identify prenatal lymphatic function as an unexpected requirement for neonatal lung inflation and respiration. Mice lacking lymphatic vessels, due either to loss of the lymphangiogenic factor CCBE1 or VEGFR3 function, appear cyanotic and die shortly after birth due to failure of lung inflation. Failure of lung inflation is not due to reduced surfactant levels or altered development of the lung but is associated with an elevated wet/dry ratio consistent with edema. Embryonic studies reveal active lymphatic function in the late gestation lung, and significantly reduced total lung compliance in late gestation embryos that lack lymphatics. These findings reveal that lymphatic vascular function plays a previously unrecognized mechanical role in the developing lung that prepares it for inflation at birth. They explain respiratory failure in infants with congenital pulmonary lymphangiectasia, and suggest that inadequate late gestation lymphatic function may also contribute to respiratory failure in premature infants.
- Published
- 2014
23. An expanded role for semaphorin 4D in platelets includes contact‐dependent amplification of Clec‐2 signaling
- Author
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Lawrence F. Brass, Paul R. Hess, Kenneth M. Wannemacher, Katsue Suzuki-Inoue, Hong Jiang, and Yongchol Shin
- Subjects
Blood Platelets ,Membrane Glycoproteins ,biology ,Plexin ,Syk ,Semaphorins ,Hematology ,Article ,Collagen receptor ,Cell biology ,Semaphorin ,Biochemistry ,Antigens, CD ,biology.protein ,Humans ,Lectins, C-Type ,Platelet ,Platelet activation ,Signal transduction ,GPVI ,Signal Transduction - Abstract
Semaphorins are cell surface proteins sharing an extracellular Sema motif that binds to plexin family receptors, among others [1]. We have shown previously that Sema4D is expressed by platelets, serving as a contact-dependent amplifier of platelet activation by promoting activation of the tyrosine kinase, Syk, downstream of the collagen receptor, GP VI/FcRγ [2–4]. Deletion of Sema4D impairs thrombus growth in mice by reducing the number of fully-activated, stably-adherent platelets in the region closest to the vessel wall [5]. Sema4D(−/−) platelets have diminished responses to collagen, but normal responses to thrombin, TxA2 and ADP [2, 4]. Collagen-induced Syk activation and the subsequent activation of phospholipase Cγ2 are most robust when Sema4D is present and platelets are allowed to form stable contacts [4]. These observations have helped to define the role of platelet Sema4D. In the setting of vascular injury, Syk is activated by binding to a phosphorylated immunoreceptor tyrosine-based activation motif (ITAM) in FcRγ. However, while our previous studies show that Sema4D does not amplify G protein-dependent signaling, left unsettled was whether signal amplification is specific for GPVI or applies to other ITAM receptors as well. Here we have addressed that issue. Human platelets express two other ITAM-containing receptors, Clec-2 and FcR-IIA. Mouse platelets express Clec-2 [6]. Unlike GPVI/FcRγ and FcR-IIA, Clec-2 contains only half of an ITAM motif or “hemi-ITAM” (YXXL). Signaling occurs when two molecules of phosphorylated Clec-2 engage a single molecule of Syk [6, 7]. The known Clec-2 ligands are the snake venom toxin, rhodocytin [6] and podoplanin. Podoplanin/Clec-2 interactions play an essential role in separating the lymphatic and vascular systems during embryonic development [8–10].
- Published
- 2013
24. Deletion of naïve T cells recognizing the minor histocompatibility antigen HY with toxin-coupled peptide-MHC class I tetramers inhibits cognate CTL responses and alters immunodominance
- Author
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Benjamin G. Vincent, Edward J. Collins, Ellen F. Young, Paul R. Hess, Keith R. Miller, Sabrina M. Hess, Adam Buntzman, and Jeffrey A. Frelinger
- Subjects
Male ,H-Y Antigen ,Immunology ,Epitopes, T-Lymphocyte ,Priming (immunology) ,Mice, Transgenic ,Immunodominance ,CD8-Positive T-Lymphocytes ,Major histocompatibility complex ,Lymphocyte Depletion ,Article ,Epitope ,Mice ,Antigen ,Minor histocompatibility antigen ,Animals ,Immunology and Allergy ,Cytotoxic T cell ,Bone Marrow Transplantation ,Transplantation ,biology ,Immunotoxins ,Histocompatibility Antigens Class I ,Allografts ,CTL ,biology.protein ,Female ,Peptides - Abstract
Alloreactive T-cell responses directed against minor histocompatibility (H) antigens, which arise from diverse genetic disparities between donor and recipient outside the MHC, are an important cause of rejection of MHC-matched grafts. Because clinically significant responses appear to be directed at only a few antigens, the selective deletion of naïve T cells recognizing donor-specific, immunodominant minor H antigens in recipients before transplantation may be a useful tolerogenic strategy. We have previously demonstrated that peptide-MHC class I tetramers coupled to a toxin can efficiently eliminate specific TCR-transgenic T cells in vivo. Here, using the minor histocompatibility antigen HY as a model, we investigated whether toxic tetramers could inhibit the subsequent priming of the two H2-D(b)-restricted, immunodominant T-cell responses by deleting precursor CTL. Immunization of female mice with male bone marrow elicited robust CTL activity against the Uty and Smcy epitopes, with Uty constituting the major response. As hypothesized, toxic tetramer administration prior to immunization increased survival of cognate peptide-pulsed cells in an in vivo CTL assay, and reduced the frequency of corresponding T cells. However, tetramer-mediated decreases in either T-cell population magnified CTL responses against the non-targeted epitope, suggesting that D(b)-Uty(+) and D(b)-Smcy(+) T cells compete for a limited common resource during priming. Toxic tetramers conceivably could be used in combination to dissect manipulate CD8(+) T-cell immunodominance hierarchies, and to prevent the induction of donor-specific, minor H antigen CTL responses in allotransplantation.
- Published
- 2013
25. Podoplanin maintains high endothelial venule integrity by interacting with platelet CLEC-2
- Author
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Andrew J. Morris, Lijun Xia, Bernhard Nieswandt, Florea Lupu, Robert Silasi-Mansat, Hong Chen, Minjia Sheng, Paul R. Hess, J. Michael McDaniel, Tadayuki Yago, Frauke May, Mark L. Kahn, Yanfang Pan, Stephen J. Wilson, Aslihan Sen, Brett H. Herzog, Shaun R. Coughlin, Jianxin Fu, Samuel McGee, and Rodger P. McEver
- Subjects
Male ,Endothelium ,High endothelial venules ,Biology ,Article ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Antigens, CD ,Sphingosine ,Reticular cell ,medicine ,Animals ,Lectins, C-Type ,Platelet activation ,Lymphocyte homing receptor ,PDPN ,030304 developmental biology ,0303 health sciences ,Membrane Glycoproteins ,Multidisciplinary ,virus diseases ,Cadherins ,Cell biology ,Mice, Inbred C57BL ,Intercellular Junctions ,medicine.anatomical_structure ,Gene Expression Regulation ,Podoplanin ,030220 oncology & carcinogenesis ,Immunology ,Female ,Lymph Nodes ,Lymph ,Endothelium, Lymphatic ,Lysophospholipids - Abstract
Circulating lymphocytes continuously enter lymph nodes for immune surveillance through specialized blood vessels named high endothelial venules, a process that increases markedly during immune responses. How high endothelial venules (HEVs) permit lymphocyte transmigration while maintaining vascular integrity is unknown. Here we report a role for the transmembrane O-glycoprotein podoplanin (PDPN, also known as gp38 and T1α) in maintaining HEV barrier function. Mice with postnatal deletion of Pdpn lost HEV integrity and exhibited spontaneous bleeding in mucosal lymph nodes, and bleeding in the draining peripheral lymph nodes after immunization. Blocking lymphocyte homing rescued bleeding, indicating that PDPN is required to protect the barrier function of HEVs during lymphocyte trafficking. Further analyses demonstrated that PDPN expressed on fibroblastic reticular cells, which surround HEVs, functions as an activating ligand for platelet C-type lectin-like receptor 2 (CLEC-2, also known as CLEC1B). Mice lacking fibroblastic reticular cell PDPN or platelet CLEC-2 exhibited significantly reduced levels of VE-cadherin (also known as CDH5), which is essential for overall vascular integrity, on HEVs. Infusion of wild-type platelets restored HEV integrity in Clec-2-deficient mice. Activation of CLEC-2 induced release of sphingosine-1-phosphate from platelets, which promoted expression of VE-cadherin on HEVs ex vivo. Furthermore, draining peripheral lymph nodes of immunized mice lacking sphingosine-1-phosphate had impaired HEV integrity similar to Pdpn- and Clec-2-deficient mice. These data demonstrate that local sphingosine-1-phosphate release after PDPN-CLEC-2-mediated platelet activation is critical for HEV integrity during immune responses.
- Published
- 2013
26. Development of an ELISA to detect circulating anti-asparaginase antibodies in dogs with lymphoid neoplasia treated withEscherichia coli<scp>l</scp>-asparaginase
- Author
-
Peter S. Ross, Jason A. Kidd, Paul R. Hess, and Adam Buntzman
- Subjects
Drug ,Asparaginase ,Canine Lymphoma ,General Veterinary ,biology ,media_common.quotation_subject ,medicine.disease ,medicine.disease_cause ,Immunoglobulin G ,Lymphoma ,Titer ,chemistry.chemical_compound ,chemistry ,Immunology ,medicine ,biology.protein ,Antibody ,Escherichia coli ,media_common - Abstract
Resistance to Escherichia coli l-asparaginase in canine lymphoma occurs frequently with repeated administration, a phenomenon often attributed, without substantiation, to the induction of neutralizing antibodies. To test the hypothesis that treated dogs develop antibodies against the drug, we created an enzyme-linked immunosorbent assay (ELISA) to measure plasma anti-asparaginase immunoglobulin G responses. Using samples from dogs that had received multiple doses, specific reactivity against l-asparaginase was demonstrated, while naive patients' samples were negative. The optimized ELISA appeared sensitive, with endpoint titers >1 600 000 in positive control dogs. Intra- and inter-assay coefficients of variation were 3.6 and 14.5%. The assay was supported by the observation that ELISA-positive plasma could immunoprecipitate asparaginase activity. When clinical patients were evaluated, 3/10 dogs developed titers after a single injection; with repeated administration, 4/7 dogs were positive. l-asparaginase antibodies showed reduced binding to the PEGylated drug formulation. The ELISA should prove useful in investigating the potential correlation of antibody responses with resistance.
- Published
- 2012
27. A cell-based MHC stabilization assay for the detection of peptide binding to the canine classical class I molecule, DLA-88
- Author
-
Paul R. Hess, Jennifer C. Holmes, Greg S. Gojanovich, and Peter S. Ross
- Subjects
In silico ,Immunology ,Peptide binding ,Immunodominance ,CD8-Positive T-Lymphocytes ,Major histocompatibility complex ,Article ,Epitopes ,Mice ,Dogs ,Antigen ,Cell Line, Tumor ,MHC class I ,Animals ,General Veterinary ,biology ,Cell Membrane ,Histocompatibility Antigens Class I ,Transporter associated with antigen processing ,Molecular biology ,Protein Subunits ,Gene Expression Regulation ,biology.protein ,Biological Assay ,CD8 ,Protein Binding - Abstract
Identifying immunodominant CTL epitopes is essential for studying CD8+ T-cell responses in populations, but remains difficult, as peptides within antigens typically are too numerous for all to be synthesized and screened. Instead, to facilitate discovery, in silico scanning of proteins for sequences that match the motif, or binding preferences, of the restricting MHC class I allele – the largest determinant of immunodominance – can be used to predict likely candidates. The high false positive rate with this analysis ideally requires binding confirmation, which is obtained routinely by an assay using cell lines such as RMA-S that have defective transporter associated with antigen processing (TAP) machinery, and consequently, few surface class I molecules. The stabilization and resultant increased life-span of peptide-MHC complexes on the cell surface by the addition of true binders validates their identity. To determine whether a similar assay could be developed for dogs, we transfected a prevalent class I allele, DLA-88*50801, into RMA-S. In the BARC3 clone, the recombinant heavy chain was associated with murine β2-microglobulin, and importantly, could differentiate motif-matched and -mismatched peptides by surface MHC stabilization. This work demonstrates the potential to use RMA-S cells transfected with canine alleles as a tool for CTL epitope discovery in this species.
- Published
- 2012
28. Chronic lymphocytic leukaemia in the cat: 18 cases (2000-2010)
- Author
-
Paul R. Hess, M. W. Campbell, and Laurel E. Williams
- Subjects
medicine.medical_specialty ,Vincristine ,education.field_of_study ,Cytopenia ,CATS ,General Veterinary ,Chlorambucil ,Lymphocytosis ,Cyclophosphamide ,business.industry ,Population ,medicine.disease ,Gastroenterology ,Surgery ,hemic and lymphatic diseases ,Internal medicine ,medicine ,Prednisolone ,medicine.symptom ,business ,education ,medicine.drug - Abstract
There is little information regarding the presentation, biologic behaviour, treatment and prognosis in cats with chronic lymphocytic leukaemia (CLL), and further investigation is needed to characterize this disease in cats. The goal of this study was to describe the clinical presentation, response to treatment and prognosis of feline CLL. A multi-institutional retrospective study of 18 cats diagnosed with CLL between 2000 and 2010 was performed. CLL was defined as the presence of a mature lymphocytosis (>9000 lymphocytes µL(-1) ) and confirmation of an immunophenotypically monomorphic or clonal lymphoid population. Each patient was required to also have at least one of the two following criteria: (1) concurrent cytopenia of at least one cell line and/or (2) >15% mature lymphocytes in the bone marrow. Data on signalment, history, clinical signs, clinicopathologic features and response to treatment were reviewed. Median age of the cats at initial presentation was 12.5 years (range: 5-20 years). The most common presenting complaint was chronic weight loss, which was present in 8/18 (44%) cats. Sixteen of 18 (89%) cats were treated with chlorambucil and prednisolone; four of these cats also received vincristine. Two (11%) cats were treated with multi-agent injectable chemotherapy (L-CHOP, l-asparaginase, cyclophosphamide, doxorubicin, vincristine, prednisolone). Eighty-eight percent of cats evaluable for response achieved a complete (nine cats) or partial (six cats) remission. Median overall remission was 15.7 months (range: 1.3-22.8 months). The median overall survival in the 17 cats with follow-up data was 14.4 months (range: 0.9-25.3 months). Results of this study suggest that CLL affects older-aged cats and responds favourably to treatment with oral chlorambucil and prednisolone.
- Published
- 2012
29. Making the Most of Major Histocompatibility Complex Molecule Multimers: Applications in Type 1 Diabetes
- Author
-
Paul R. Hess and Greg S. Gojanovich
- Subjects
CD4-Positive T-Lymphocytes ,lcsh:Immunologic diseases. Allergy ,Immunology ,Antigen presentation ,chemical and pharmacologic phenomena ,Review Article ,Streptamer ,CD8-Positive T-Lymphocytes ,Major histocompatibility complex ,Major Histocompatibility Complex ,medicine ,Animals ,Humans ,Immunology and Allergy ,Cytotoxic T cell ,Receptor ,biology ,Pancreatic islets ,Histocompatibility Antigens Class I ,Histocompatibility Antigens Class II ,General Medicine ,medicine.disease ,Diabetes Mellitus, Type 1 ,medicine.anatomical_structure ,biology.protein ,Protein Multimerization ,Peptides ,lcsh:RC581-607 ,Insulitis ,CD8 - Abstract
Classical major histocompatibility complex (MHC) class I and II molecules present peptides to cognate T-cell receptors on the surface of T lymphocytes. The specificity with which T cells recognize peptide-MHC (pMHC) complexes has allowed for the utilization of recombinant, multimeric pMHC ligands for the study of minute antigen-specific T-cell populations. In type 1 diabetes (T1D), CD8+ cytotoxic T lymphocytes, in conjunction with CD4+ T helper cells, destroy the insulin-producingβcells within the pancreatic islets of Langerhans. Due to the importance of T cells in the progression of T1D, the ability to monitor and therapeutically target diabetogenic clonotypes of T cells provides a critical tool that could result in the amelioration of the disease. By administering pMHC multimers coupled to fluorophores, nanoparticles, or toxic moieties, researchers have demonstrated the ability to enumerate, track, and delete diabetogenic T-cell clonotypes that are, at least in part, responsible for insulitis; some studies even delay or prevent diabetes onset in the murine model of T1D. This paper will provide a brief overview of pMHC multimer usage in defining the role T-cell subsets play in T1D etiology and the therapeutic potential of pMHC for antigen-specific identification and modulation of diabetogenic T cells.
- Published
- 2012
30. Safety and efficacy of a xenogeneic DNA vaccine encoding for human tyrosinase as adjunctive treatment for oral malignant melanoma in dogs following surgical excision of the primary tumor
- Author
-
Steven Susaneck, Monika K. Jankowski, Paul R. Hess, Mary K. Klein, Jedd D. Wolchok, Philip J. Bergman, Ilene D. Kurzman, Pamela D Jones, Deborah A. Grosenbaugh, Maribeth H. Johnson, A. Timothy Leard, Nicole F. Leibman, and Karri Meleo
- Subjects
Male ,medicine.medical_specialty ,DNA, Complementary ,Oral Surgical Procedures ,Kaplan-Meier Estimate ,Administration, Cutaneous ,Cancer Vaccines ,Gastroenterology ,DNA vaccination ,Dogs ,Internal medicine ,Vaccines, DNA ,medicine ,Canine Melanoma ,Animals ,Humans ,Dog Diseases ,Prospective Studies ,Melanoma ,Survival analysis ,Neoplasm Staging ,General Veterinary ,Monophenol Monooxygenase ,business.industry ,General Medicine ,medicine.disease ,Primary tumor ,United States ,Surgery ,Clinical trial ,Vaccination ,Treatment Outcome ,Adjunctive treatment ,Female ,Mouth Neoplasms ,business ,Follow-Up Studies ,Plasmids - Abstract
Objective—To evaluate the safety and efficacy of a vaccine containing plasmid DNA with an insert encoding human tyrosinase (ie, huTyr vaccine) as adjunctive treatment for oral malignant melanoma (MM) in dogs. Animals—111 dogs (58 prospectively enrolled in a multicenter clinical trial and 53 historical controls) with stage II or III oral MM (modified World Health Organization staging scale, I to IV) in which locoregional disease control was achieved. Procedures—58 dogs received an initial series of 4 injections of huTyr vaccine (102 μg of DNA/injection) administered transdermally by use of a needle-free IM vaccination device. Dogs were monitored for adverse reactions. Surviving dogs received booster injections at 6-month intervals thereafter. Survival time for vaccinates was compared with that of historical control dogs via Kaplan-Meier survival analysis for the outcome of death. Results—Kaplan-Meier analysis of survival time until death attributable to MM was determined to be significantly improved for dogs that received the huTyr vaccine, compared with that of historical controls. However, median survival time could not be determined for vaccinates because < 50% died of MM before the end of the observation period. No systemic reactions requiring veterinary intervention were associated with vaccination. Local reactions were primarily limited to acute wheal or hematoma formation, mild signs of pain at the injection site, and postvaccination bruising. Conclusions and Clinical Relevance—Results support the safety and efficacy of the huTyr DNA vaccine in dogs as adjunctive treatment for oral MM. Impact for Human Medicine—Response to DNA vaccination in dogs with oral MM may be useful in development of plasmid DNA vaccination protocols for human patients with similar disease.
- Published
- 2011
31. RGS/Gi2α interactions modulate platelet accumulation and thrombus formation at sites of vascular injury
- Author
-
Lawrence F. Brass, Peisong Ma, Rachel S. Signarvic, Richard R. Neubig, Karen P. Fong, Paul R. Hess, Timothy J. Stalker, Scott L. Diamond, Aleksandra Cierniewska, and Manash S. Chatterjee
- Subjects
Blood Platelets ,Male ,medicine.medical_specialty ,Platelet Aggregation ,Immunoblotting ,Immunology ,Prostaglandin ,Prostacyclin ,Biology ,Biochemistry ,Thrombosis and Hemostasis ,Mice ,chemistry.chemical_compound ,Internal medicine ,Cyclic AMP ,medicine ,Animals ,Cyclic adenosine monophosphate ,Platelet ,Platelet activation ,Phosphorylation ,Receptor ,Protein kinase B ,Platelet Count ,Thrombosis ,Cell Biology ,Hematology ,Vascular System Injuries ,Platelet Activation ,Mice, Inbred C57BL ,Endocrinology ,chemistry ,Mutation ,Calcium ,Female ,GTP-Binding Protein alpha Subunit, Gi2 ,Proto-Oncogene Proteins c-akt ,RGS Proteins ,Signal Transduction ,medicine.drug - Abstract
Although much is known about extrinsic regulators of platelet function such as nitric oxide and prostaglandin I2 (PGI2), considerably less is known about intrinsic mechanisms that prevent overly robust platelet activation after vascular injury. Here we provide the first evidence that regulators of G-protein signaling (RGS) proteins serve this role in platelets, using mice with a G184S substitution in Gi2α that blocks RGS/Gi2 interactions to examine the consequences of lifting constraints on Gi2-dependent signaling without altering receptor:effector coupling. The results show that the Gi2α(G184S) allele enhances platelet aggregation in vitro and increases platelet accumulation after vascular injury when expressed either as a global knock-in or limited to hematopoietic cells. Biochemical studies show that these changes occur in concert with an attenuated rise in cyclic adenosine monophosphate levels in response to prostacyclin and a substantial increase in basal Akt activation. In contrast, basal cyclic adenosine monophosphate (cAMP) levels, agonist-stimulated increases in [Ca++]i, Rap1 activation, and α-granule secretion were unaffected. Collectively, these observations (1) demonstrate an active role for RGS proteins in regulating platelet responsiveness, (2) show that this occurs in a pathway-selective manner, and (3) suggest that RGS proteins help to prevent unwarranted platelet activation as well as limiting the magnitude of the normal hemostatic response.
- Published
- 2010
32. Evaluation of an in vitro telomeric repeat amplification protocol assay to detect telomerase activity in canine urine
- Author
-
Steven E. Suter, Paul R. Hess, Laurel E. Williams, and Angela L. McCleary-Wheeler
- Subjects
Canine Transitional Cell Carcinoma ,Telomerase ,Urinary system ,Population ,Urine ,Biology ,Polymerase Chain Reaction ,Dogs ,Cell Line, Tumor ,Enzyme Stability ,Carcinoma ,medicine ,Animals ,Dog Diseases ,education ,Lung ,Carcinoma, Transitional Cell ,education.field_of_study ,General Veterinary ,General Medicine ,Fibroblasts ,Telomere ,medicine.disease ,Molecular biology ,In vitro ,Cell culture ,Electrophoresis, Polyacrylamide Gel - Abstract
Objective—To evaluate the usefulness of a PCR-based telomeric repeat amplification protocol (TRAP) assay for detecting telomerase activity in cells from a canine transitional cell carcinoma (TCC) cell line and, ultimately, in the urine of dogs with TCC. Animals—11 dogs with histologic or cytologic evidence of TCC, 10 dogs with benign lower urinary tract disease, and 9 healthy dogs. Procedures—Telomerase activity was initially evaluated in cells from canine TCC (K9TCC) and telomerase-negative (WI-38) cell lines. Following assay optimization, telomerase stability was evaluated at various storage durations and temperatures. Urine samples were then obtained prospectively from study dogs. Results—Telomerase activity was detected in the K9TCC cell line. The TRAP assay detected telomerase activity in as few as 10 K9TCC cells alone and as low as 2% of a total cell population in K9TCC and WI-38 mixing experiments. A loss of telomerase activity was detected with increasing urine storage durations at various temperatures. Telomerase activity was clearly detected in samples collected from 10 of 11 dogs with TCC, 2 of 10 dogs with benign lower urinary tract disease, and none of the 9 healthy dogs. Conclusions and Clinical Relevance—The TRAP-based assay detected telomerase activity in the canine TCC cell line and revealed that the telomerase ribonucleoprotein complex was inherently unstable at various storage durations and conditions. Telomerase activity was also detectable in urine samples obtained from dogs with TCC, which suggested the TRAP assay may be useful in diagnosing TCC in dogs.
- Published
- 2010
33. Platelets
- Author
-
Paul R. Hess, Mark L. Kahn, and Cara C. Bertozzi
- Subjects
Blood Platelets ,Cell type ,government.form_of_government ,Biology ,Article ,Animals ,Humans ,Syk Kinase ,Lectins, C-Type ,Platelet ,Platelet activation ,Lymphangiogenesis ,Adaptor Proteins, Signal Transducing ,Lymphatic Vessels ,Membrane Glycoproteins ,Intracellular Signaling Peptides and Proteins ,Protein-Tyrosine Kinases ,Phosphoproteins ,Platelet Activation ,Cell biology ,Lymphatic Endothelium ,Lymphatic system ,Podoplanin ,Immunology ,government ,Signal transduction ,Cardiology and Cardiovascular Medicine ,Signal Transduction - Abstract
The field of platelet biology has rapidly expanded beyond the classical role of platelets in preventing blood loss and orchestrating clot formation. Despite the lack of transcriptional ability of these anuclear cell fragments, platelet function is now thought to encompass such diverse contexts as tissue repair, immune activation, primary tumor formation, and metastasis. Recent studies from multiple groups have turned the spotlight on an exciting new role for platelets in the formation of lymphatic vessels during embryonic development. Genetic experiments demonstrate that Podoplanin, a transmembrane protein expressed on lymphatic endothelial cells, engages the platelet C-type lectin-like receptor 2 (CLEC-2) when exposed to blood, leading to SYK-SLP-76-dependent platelet activation. When components of this pathway are disrupted, aberrant vascular connections form, resulting in blood-lymphatic mixing. Furthermore, platelet-null embryos manifest identical blood-lymphatic mixing. The identification of platelets as the critical cell type mediating blood-lymphatic vascular separation raises new questions in our understanding of lymphatic development and platelet biology.
- Published
- 2010
34. Platelets regulate lymphatic vascular development through CLEC-2–SLP-76 signaling
- Author
-
Zhiying Zou, Patricia Mericko, Matthias Stadtfeld, Alan W. Flake, Min Min Lu, Paul R. Hess, Bin Xu, Demetri J. Merianos, Matthew T. Santore, Mark L. Kahn, Diane Zhou, C. Chen, Radek C. Skoda, Cara C. Bertozzi, Mei Chen, Jonathan S. Maltzman, Alec A. Schmaier, Eric Sebzda, Thomas Graf, and Gary A. Koretzky
- Subjects
Blood Platelets ,Cell type ,Endothelium ,government.form_of_government ,Immunology ,Mice, Transgenic ,Biology ,Biochemistry ,Mice ,Vascular Biology ,medicine ,Animals ,Humans ,Lectins, C-Type ,PDPN ,Cells, Cultured ,Adaptor Proteins, Signal Transducing ,Lymphatic Vessels ,Membrane Glycoproteins ,Endothelial Cells ,Cell Biology ,Hematology ,Embryo, Mammalian ,Phosphoproteins ,Embryonic stem cell ,Cell biology ,Mice, Inbred C57BL ,Lymphatic Endothelium ,medicine.anatomical_structure ,Lymphatic system ,Podoplanin ,government ,Blood Vessels ,Endothelium, Vascular ,Endothelium, Lymphatic ,Signal transduction ,Protein Binding ,Signal Transduction - Abstract
Although platelets appear by embryonic day 10.5 in the developing mouse, an embryonic role for these cells has not been identified. The SYK–SLP-76 signaling pathway is required in blood cells to regulate embryonic blood-lymphatic vascular separation, but the cell type and molecular mechanism underlying this regulatory pathway are not known. In the present study we demonstrate that platelets regulate lymphatic vascular development by directly interacting with lymphatic endothelial cells through C-type lectin-like receptor 2 (CLEC-2) receptors. PODOPLANIN (PDPN), a transmembrane protein expressed on the surface of lymphatic endothelial cells, is required in nonhematopoietic cells for blood-lymphatic separation. Genetic loss of the PDPN receptor CLEC-2 ablates PDPN binding by platelets and confers embryonic lymphatic vascular defects like those seen in animals lacking PDPN or SLP-76. Platelet factor 4-Cre–mediated deletion of Slp-76 is sufficient to confer lymphatic vascular defects, identifying platelets as the cell type in which SLP-76 signaling is required to regulate lymphatic vascular development. Consistent with these genetic findings, we observe SLP-76–dependent platelet aggregate formation on the surface of lymphatic endothelial cells in vivo and ex vivo. These studies identify a nonhemostatic pathway in which platelet CLEC-2 receptors bind lymphatic endothelial PDPN and activate SLP-76 signaling to regulate embryonic vascular development.
- Published
- 2010
35. Decoding the Feline Leukocyte Antigen MHC class I system via SMRT sequencing
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Paul R. Hess, Jennifer C. Holmes, Allison N. Dickey, Elizabeth H. Scholl, and Jeffrey L. Thorne
- Subjects
Immunology ,Immunology and Allergy - Abstract
CD8+ T-cell cytotoxicity is an important component of anti-viral immune responses and is restricted by MHC class I peptide presentation. Investigating virus-specific CTL in cats is impeded by the rudimentary understanding of the Feline Leukocyte Antigen class I (FLAI) system. As polygeny and polymorphisms are inherent MHC features, defining functional loci and cataloging alleles are the first steps in characterizing FLAI. Additionally, identification of prevalent alleles will permit discovery of immunodominant CTL responses. Previously, using conventional sequencing of class I hypervariable regions, we defined three class Ia loci, FLA-E, -H and -K, and found allele sharing, even in our small sample of cats. Because of high FLAI homology, partial-length sequences did not allow unambiguous assignment of all alleles to their originating locus. We hypothesized that the PacBio SMRT sequencing platform would allow us to efficiently obtain full-length genotyping of all class Ia loci in multi-cat cohorts. Consensus building of FLAI contigs provided complete MHC sequences with high accuracy, greater depth and sensitivity, and in a fraction of the time of traditional cloning and Sanger techniques. In sequencing 17 cats (including 2 reference individuals), we clarified locus assignments, identified >40 novel classical class I alleles and discovered several common allele supergroups (FLA-E*003, -E*009, -K*002, and -K*003). Also, for the first time, we confirmed the identify and expression of 2 class Ib loci (FLA-J, -L). This work brings the current total of known FLAI alleles to ~100 across 3 class Ia and ~35 across 2 class Ib loci. This new dataset should accelerate feline anti-viral research and facilitate allotransplantation in cats.
- Published
- 2018
36. The prevalent Boxer MHC class Ia allele Dog Leukocyte Antigen (DLA)-88*034:01 presents 9-mer peptides with a defined binding motif
- Author
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Paul R. Hess, Paige S. Nemec, Alexander Kapatos, and Jennifer C. Holmes
- Subjects
Immunology ,Immunology and Allergy - Abstract
Adoptive cell transfer (ACT) for chemoresistant malignancies can induce dramatic remissions and prolong life, but factors that determine T-cell efficacy and off-target/-tumor events associated with therapy remain incompletely understood. Modeling ACT in spontaneous canine cancer models could provide critical insights and propel development; however, relevant peptides from tumor-specific antigens (TSAs) have yet to be reported in dogs. Discovery of TSA epitopes restricted by a high-prevalence MHC allele can be facilitated by in silico analysis using a defined binding motif and a large peptide dataset to train prediction software. We sought to characterize the binding preferences of the DLA-88*034:01 allele, carried by 82% of Boxers, an inbred, popular breed with increased risks for glioma and lymphoma, important ACT targets. We hypothesized that DLA-88*034:01 presents diverse self-peptides with conserved residue preferences at ≥1 position(s) that can be inferred by pattern analysis. To test this prediction, DLA-88*034:01-FLAG was immunoprecipitated from large-scale cultures of a canine cell clone, PN62, and alkaline-eluted peptides were sequenced by liquid chromatography-tandem mass spectrometry. DLA-88*034:01 prefers peptides that are 9 amino acids (AAs) in length. Analysis of 640 9-mers showed a preference for acidic AAs at position(P)1, non-bulky hydrophobic AAs at P2, and basic AAs at P4. At P6 and P9, H and F were highly favored, respectively. Bulky hydrophobic and charged AAs were unfavorable at P2, as were W, M and Y at P8. This dataset will allow more accurate prediction of TSA-derived peptides recognized by CTL in a majority of Boxers with glioma or lymphoma, and should foster development of an ACT model in this breed.
- Published
- 2018
37. Selective deletion of antigen-specific CD8+ T cells by MHC class I tetramers coupled to the type I ribosome-inactivating protein saporin
- Author
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Edward J. Collins, Paul R. Hess, John M. Cullen, Jeffrey A. Frelinger, C M. Barnes, Matthew D. Woolard, and Michael D. L. Johnson
- Subjects
Time Factors ,Saporin ,T cell ,Immunology ,Clonal Deletion ,Mice, Transgenic ,CD8-Positive T-Lymphocytes ,Major histocompatibility complex ,Biochemistry ,Clonal deletion ,Autoimmune Diseases ,Mice ,MHC class I ,medicine ,Animals ,Transplantation, Homologous ,Cytotoxic T cell ,N-Glycosyl Hydrolases ,Plant Proteins ,Immunobiology ,Cell Death ,biology ,Cytotoxins ,Histocompatibility Antigens Class I ,T-cell receptor ,Cell Biology ,Hematology ,Saporins ,Molecular biology ,medicine.anatomical_structure ,Ribosome Inactivating Proteins, Type 1 ,biology.protein ,CD8 - Abstract
CD8+ cytotoxic T lymphocytes (CTLs) are important effector cells responsible for tissue destruction in several autoimmune and allograft-related diseases. To discover if pathogenic T cells could be selectively deleted, we investigated the ability of a toxin coupled to major histocompatibility complex (MHC) class I tetramers to kill antigen-specific CD8+ T cells. H2-Db tetramers were assembled using streptavidin conjugated to the ribosome-inactivating protein (RIP) saporin (SAP). These tetramers inhibited ribosome activity in vitro, retained the T-cell receptor (TCR)–binding specificity of their nontoxic counterparts, and were internalized by 100% of target cells, leading to cell death in 72 hours. Cytotoxicity was dependent on the tetramer dose and avidity for the T cell. A single injection of the SAP-coupled tetramer eliminated more than 75% of cognate, but not control, T cells. This work demonstrates the therapeutic potential of cytotoxic tetramers to selectively eradicate pathogenic clonotypes while leaving overall T-cell immunity intact.
- Published
- 2006
38. Experimental Ehrlichia canis infection in the dog does not cause immunosuppression
- Author
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Edward B. Breitschwerdt, Barbara C. Hegarty, Paul R. Hess, R V English, and G. Dale Brown
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CD4-Positive T-Lymphocytes ,Immunodiffusion ,Lymphocytosis ,Ehrlichia canis ,Immunology ,Immunoglobulins ,Lymphocyte proliferation ,Immunophenotyping ,Random Allocation ,Dogs ,Immune system ,Immunity ,medicine ,Animals ,Dog Diseases ,Seroconversion ,Killer Cells, Lymphokine-Activated ,Immunity, Cellular ,General Veterinary ,biology ,Ehrlichiosis ,Flow Cytometry ,biology.organism_classification ,Virology ,Specific Pathogen-Free Organisms ,Doxycycline ,Antibody Formation ,Ehrlichiosis (canine) ,biology.protein ,Female ,medicine.symptom ,Antibody - Abstract
A carrier state develops in some Ehrlichia canis-infected dogs due to ineffective host defenses. The subsequent development of immune-mediated diseases or opportunistic infections in chronic ehrlichiosis suggests dysregulation of immunity; however, the immunobiology of this infection has not been well characterized. In this study, eight dogs were infected with E. canis, and changes in seroreactivity, serum immunoglobulin (Ig) concentrations, peripheral blood T cell subsets, lymphocyte blastogenesis (LBT), and lymphokine-activated killer (LAK) activity were evaluated over 4 months. Infection, which was documented by seroconversion, polymerase chain reaction, and blood culture, caused self-limiting fever and thrombocytopenia. Infected dogs developed an anti-E. canis antibody response but were not immune to re-infection. Serum IgM, IgG, and IgA concentrations were unaffected by E. canis. The percentage of circulating CD4(+) T cells was similar in uninfected and infected dogs at all points. Infected dogs developed a CD8(+) lymphocytosis 6 weeks after inoculation that subsequently subsided, despite organism persistence. Functional defects of cell-mediated immunity, measured as suppression of LAK activity or mitogen-driven LBT, were not observed. These results suggest that immune responses are not grossly impaired in young dogs during the first several months following experimental E. canis infection.
- Published
- 2006
39. Thermal Dose Is Related to Duration of Local Control in Canine Sarcomas Treated with Thermoradiotherapy
- Author
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Paul R. Hess, Daohai Yu, Chieko Azuma, Laurel E. Williams, Beth Case, Gary L. Rosner, Wilma E. Stanley, Thaddeus V. Samulski, Susan M. LaRue, Marlene L. Hauck, Donald E. Thrall, Mark W. Dewhirst, J M Poulson, Amy F. Pruitt, and Linda L. Sanders
- Subjects
Hyperthermia ,Cancer Research ,medicine.medical_specialty ,medicine.medical_treatment ,Urology ,Article ,Random Allocation ,Dogs ,medicine ,Animals ,Prospective Studies ,Prospective cohort study ,biology ,business.industry ,Soft tissue sarcoma ,Fissipedia ,Sarcoma ,Hyperthermia, Induced ,Neoplasms, Experimental ,Tumor Oxygenation ,medicine.disease ,biology.organism_classification ,Combined Modality Therapy ,Confidence interval ,Surgery ,Radiation therapy ,Disease Models, Animal ,Treatment Outcome ,Oncology ,business - Abstract
Purpose: To test that prospective delivery of higher thermal dose is associated with longer tumor control duration. Experimental Design: 122 dogs with a heatable soft tissue sarcoma were randomized to receive a low (2-5 CEM43°CT90) or high (20-50 CEM43°CT90) thermal dose in combination with radiotherapy. Most dogs (90%) received four to six hyperthermia treatments over 5 weeks. Results: In the primary analysis, median (95% confidence interval) duration of local control in the low-dose group was 1.2 (0.7-2.1) years versus 1.9 (1.4-3.2) years in the high-dose group (log-rank P = 0.28). The probability (95% confidence interval) of tumor control at 1 year in the low-dose versus high-dose groups was 0.57 (0.43-0.70) versus 0.74 (0.62-0.86), respectively. Using multivariable procedure, thermal dose group (P = 0.023), total duration of heating (P = 0.008), tumor volume (P = 0.041), and tumor grade (P = 0.027) were significantly related to duration of local tumor control. When correcting for volume, grade, and duration of heating, dogs in the low-dose group were 2.3 times as likely to experience local failure. Conclusions: Thermal dose is directly related to local control duration in irradiated canine sarcomas. Longer heating being associated with shorter local tumor control was unexpected. However, the effect of thermal dose on tumor control was stronger than for heating duration. The heating duration effect is possibly mediated through deleterious effects on tumor oxygenation. These results are the first to show the value of prospectively controlled thermal dose in achieving local tumor control with thermoradiotherapy, and they establish a paradigm for prescribing thermoradiotherapy and writing a thermal prescription.
- Published
- 2005
40. Saporin-conjugated tetramers identify efficacious anti-HIV CD8+ T-cell specificities
- Author
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Paul R. Hess, Fabian Chen, Ellen M. Leitman, Marcus Altfeld, Paul Klenerman, Christine D. Palmer, Asier Sáez-Cirión, Stuart Sims, Bruce D. Walker, Lynn Riddell, Philippa C Matthews, Philip J. R. Goulder, Søren Buus, University of Oxford, Harvard Medical School [Boston] (HMS), Ragon Institute of MGH, MIT and Harvard, University of Copenhagen = Københavns Universitet (UCPH), Royal Berkshire Hospital, NHS Foundation Trust [London], The Royal Marsden, Universität Zürich [Zürich] = University of Zurich (UZH), John Radcliffe Hospital [Oxford University Hospital], HIV, Inflammation et persistance - HIV, Inflammation and Persistence, Institut Pasteur [Paris] (IP), University of KwaZulu-Natal [Durban, Afrique du Sud] (UKZN), North Carolina State University [Raleigh] (NC State), University of North Carolina System (UNC), This work was funded by grants from the National Institutes of Health (RO1AI46995 to P.G.), the Wellcome Trust (WT104748MA to P.G.), NIHR research capability funding (to P.C.M.) and the Clarendon Fund (to E.L.)., University of Zurich, Goulder, Philip J R, University of Oxford [Oxford], University of Copenhagen = Københavns Universitet (KU), HIV, Inflammation et persistance, Institut Pasteur [Paris], and University of KwaZulu-Natal (UKZN)
- Subjects
RNA viruses ,0301 basic medicine ,Saporin ,[SDV]Life Sciences [q-bio] ,lcsh:Medicine ,HIV Infections ,CD8-Positive T-Lymphocytes ,Pathology and Laboratory Medicine ,White Blood Cells ,0302 clinical medicine ,Immunodeficiency Viruses ,Animal Cells ,Medicine and Health Sciences ,Cytotoxic T cell ,Enzyme-Linked Immunoassays ,lcsh:Science ,Staining ,Multidisciplinary ,biology ,T Cells ,MESH: Protein Multimerization ,Cell Staining ,MESH: HIV Infections ,Viral Load ,MESH: CD8-Positive T-Lymphocytes ,Endocytosis ,3. Good health ,Medical Microbiology ,Viral Pathogens ,Viruses ,MESH: Endocytosis ,Lentivirus ,Ribosome Inactivating Proteins, Type 1 ,[SDV.IMM]Life Sciences [q-bio]/Immunology ,Cellular Types ,Pathogens ,Research Article ,10244 Institute of Virology ,Cell Binding ,MESH: Antiviral Agents ,Cell Physiology ,Immune Cells ,Immunology ,Cytotoxic T cells ,1100 General Agricultural and Biological Sciences ,MESH: Ribosome Inactivating Proteins, Type 1 ,Research and Analysis Methods ,Microbiology ,Antiviral Agents ,Lymphocyte Depletion ,Virus ,03 medical and health sciences ,Immune system ,1300 General Biochemistry, Genetics and Molecular Biology ,Virology ,Retroviruses ,Humans ,Immunoassays ,Microbial Pathogens ,MESH: Lymphocyte Depletion ,1000 Multidisciplinary ,Blood Cells ,MESH: Humans ,lcsh:R ,MESH: Saporins ,Organisms ,Biology and Life Sciences ,HIV ,Cell Biology ,biology.organism_classification ,Saporins ,Viral Replication ,CTL ,030104 developmental biology ,Specimen Preparation and Treatment ,Immunologic Techniques ,biology.protein ,570 Life sciences ,lcsh:Q ,Protein Multimerization ,Viral Transmission and Infection ,Ex vivo ,CD8 ,030215 immunology - Abstract
International audience; Antigen-specific T-cells are highly variable, spanning potent antiviral efficacy and damaging auto-reactivity. In virus infections, identifying the most efficacious responses is critical to vaccine design. However, current methods depend on indirect measures or on ex vivo expanded CTL clones. We here describe a novel application of cytotoxic saporin-conjugated tetramers to kill antigen-specific T-cells without significant off-target effects. The relative efficacy of distinct antiviral CD8+ T-cell specificity can be directly assessed via antigen-specific CD8+ T-cell depletion. The utility of these reagents is demonstrated here in identifying the CD8+ T-cell specificity most effective in preventing HIV progression in HIV-infected HLA-B*27-positive immune controllers.
- Published
- 2017
41. Use of targeted next generation sequencing (NGS) to assess mutational load in glioblastoma (GBM)
- Author
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Stephen J Bagley, MacLean Nasrallah, Donald M. O'Rourke, Ashkan Bigdeli, Jennifer J.D. Morrissette, Gerald P. Linette, Arati Desai, Paul R. Hess, Priya Velu, and Steven Brem
- Subjects
Genetics ,Cancer Research ,Oncology ,Immune checkpoint inhibitors ,medicine ,Computational biology ,Biology ,medicine.disease ,DNA sequencing ,Glioblastoma - Abstract
2027 Background: Trials of immune checkpoint inhibitors in GBM are ongoing. Evidence from other tumors suggests that high mutational load predicts response to these agents. We estimated mutational load in adults with newly diagnosed GBM using targeted NGS and assessed its association with other clinicopathologic parameters. Methods: NGS was performed for all patients diagnosed with isocitrate dehydrogenase wild-type (IDH-WT) GBM at our institution since September 1, 2016. Our panel performs targeted exome sequencing of 153 cancer-related genes (+/- 10 bp at intron/exon boundaries) and detects insertions, deletions, and single nucleotide variants at an allele frequency of 2%. Polymorphisms present in > 0.1% of the population according to the ExAC database and 1000 Genomes Project were filtered to reduce germline variants in the absence of matched normals. To avoid upward skewing of mutational load due to the panel’s preferential detection of genes recurrently mutated in cancer, alterations with known or likely functional disruption per the COSMIC database and/or our internal variant knowledge base were also not counted. The number of mutations counted was divided by the coding region target territory of the NGS panel (~0.5 Mb) to extrapolate mutational load to the whole exome. The Mann-Whitney U test was used to compare mutational load according to sex, age (≥65 vs. < 65), and MGMT methylation status (positive vs. negative). Results: Of 28 patients, median age was 65, 75% were male, and 37% were MGMT-methylated. Mean mutational load was 3.6 mutations/Mb (range 0-8, standard deviation 2.3) and was higher in males (4.3, 95% CI 3.3-5.3) compared to females (1.4, 95% CI 0.03-2.8) (p = 0.004). Mutational load did not differ according to age or MGMT methylation. Conclusions: In newly diagnosed IDH-WT GBM, targeted NGS revealed an estimated mutation rate similar to that reported in whole exome sequencing studies. In addition, we detected a higher mutational load in males compared to females. The latter finding adds to recent evidence suggesting sex-specific differences in the biology of GBM, and implies that future studies should account for sex when assessing mutational load as a predictive marker of immune checkpoint inhibition.
- Published
- 2017
42. Platelet Immunoreceptor Tyrosine-Based Activation Motif (ITAM) Signaling and Vascular Integrity
- Author
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Wolfgang Bergmeier, Paul R. Hess, Mark L. Kahn, and Yacine Boulaftali
- Subjects
Physiology ,CLEC7A ,Inflammation ,Biology ,Cell biology ,Hemostasis ,Immunoreceptor tyrosine-based activation motif ,Immunology ,medicine ,Protease-activated receptor ,Platelet ,Platelet activation ,medicine.symptom ,Signal transduction ,Cardiology and Cardiovascular Medicine - Abstract
Platelets are well-known for their critical role in hemostasis, that is, the prevention of blood loss at sites of mechanical vessel injury. Inappropriate platelet activation and adhesion, however, can lead to thrombotic complications, such as myocardial infarction and stroke. To fulfill its role in hemostasis, the platelet is equipped with various G protein–coupled receptors that mediate the response to soluble agonists such as thrombin, ADP, and thromboxane A2. In addition to G protein–coupled receptors, platelets express 3 glycoproteins that belong to the family of immunoreceptor tyrosine-based activation motif receptors: Fc receptor γ chain, which is noncovalently associated with the glycoprotein VI collagen receptor, C-type lectin 2, the receptor for podoplanin, and Fc receptor γII A, a low-affinity receptor for immune complexes. Although both genetic and chemical approaches have documented a critical role for platelet G protein–coupled receptors in hemostasis, the contribution of immunoreceptor tyrosine-based activation motif receptors to this process is less defined. Studies performed during the past decade, however, have identified new roles for platelet immunoreceptor tyrosine-based activation motif signaling in vascular integrity in utero and at sites of inflammation. The purpose of this review is to summarize recent findings on how platelet immunoreceptor tyrosine-based activation motif signaling controls vascular integrity, both in the presence and absence of mechanical injury.
- Published
- 2014
- Full Text
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43. Pathology in Practice
- Author
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Paul R. Hess, Christopher J Palgrave, S. Hunter, and Dawn M Clarke
- Subjects
Pathology ,medicine.medical_specialty ,General Veterinary ,040301 veterinary sciences ,business.industry ,0402 animal and dairy science ,MEDLINE ,04 agricultural and veterinary sciences ,Plasma cell ,medicine.disease ,040201 dairy & animal science ,0403 veterinary science ,Text mining ,medicine.anatomical_structure ,medicine ,business ,Multiple myeloma - Published
- 2010
44. Comparison of automated versus manual neutrophil counts for the detection of cellular abnormalities in dogs receiving chemotherapy: 50 cases (May to June 2008)
- Author
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Grace E. Kissling, Paul R. Hess, Jennifer A. Neel, Carol B. Grindem, and Michelle C. Cora
- Subjects
education.field_of_study ,Pathology ,medicine.medical_specialty ,Chemotherapy ,Neutropenia ,General Veterinary ,business.industry ,Neutrophils ,medicine.medical_treatment ,Population ,Antineoplastic Agents ,Nucleated rbcs ,Schistocyte ,Blood smear ,Dogs ,Nucleated cell ,Neoplasms ,Medicine ,Animals ,Dog Diseases ,business ,education ,Retrospective Studies - Abstract
Objective—To determine the frequency of clinically relevant abnormalities missed by failure to perform a blood smear evaluation in a specific subset of dogs receiving chemotherapy and to compare automated and manual neutrophil counts in the same population Design—Retrospective case series Animals—50 dogs receiving chemotherapy with a total nucleated cell count > 4,000 nucleated cells/μL. Procedures—50 blood smears were evaluated for abnormalities that have strong potential to change the medical plan for a patient: presence of blast cells, band neutrophils, nucleated RBCs, toxic change, hemoparasites, schistocytes, and spherocytes. Automated and manual neutrophil counts were compared. Results—Blood smears from 10 (20%) patients had ≥ 1 abnormalities. Blast cells were identified on 4 (8%) blood smears, increased nucleated RBCs were identified on 5 (10%), and very mild toxic change was identified on 2 (4%). Correlation coefficient of the neutrophil counts was 0.96. Analysis revealed a slight bias between the automated and manual neutrophil counts (mean ± SD difference, −0.43 × 103/μL ± 1.10 × 103/μL) Conclusions and Clinical Relevance—In this series of patients, neutrophil count correlation was very good. Clinically relevant abnormalities were found on 20% of the blood smears. An automated CBC appears to be accurate for neutrophil counts, but a microscopic examination of the corresponding blood smear is still recommended; further studies are needed to determine whether the detection or frequency of these abnormalities would differ dependent on chemotherapy protocol, neoplastic disease, and decision thresholds used by the oncologist in the ordering of a CBC without a blood smear evaluation.
- Published
- 2013
45. Characterization and allelic variation of the transporters associated with antigen processing (TAP) genes in the domestic dog (Canis lupus familiaris)
- Author
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Jennifer C. Holmes, Savannah G. Holmer, Peter S. Ross, Paul R. Hess, and Greg S. Gojanovich
- Subjects
Immunology ,Antigen presentation ,Molecular Sequence Data ,Human leukocyte antigen ,Article ,Cell Line ,Mice ,Dogs ,MHC class I ,Animals ,Humans ,Protein Isoforms ,Amino Acid Sequence ,Promoter Regions, Genetic ,Gene ,Alleles ,Phylogeny ,Genetics ,Antigen Presentation ,Wolves ,biology ,Antigen processing ,Dog leukocyte antigen ,Histocompatibility Antigens Class I ,Genetic Variation ,Transporter associated with antigen processing ,Molecular biology ,biology.protein ,TAP2 ,ATP-Binding Cassette Transporters ,Developmental Biology - Abstract
The function of the transporters associated with antigen processing (TAP) complex is to shuttle antigenic peptides from the cytosol to the endoplasmic reticulum to load MHC class I molecules for CD8(+) T-cell immunosurveillance. Here we report the promoter and coding regions of the canine TAP1 and TAP2 genes, which encode the homologous subunits forming the TAP heterodimer. By sampling genetically divergent breeds, polymorphisms in both genes were identified, although there were few amino acid differences between alleles. Splice variants were also found. When aligned to TAP genes of other species, functional regions appeared conserved, and upon phylogenetic analysis, canine sequences segregated appropriately with their orthologs. Transfer of the canine TAP2 gene into a murine TAP2-defective cell line rescued surface MHC class I expression, confirming exporter function. This data should prove useful in investigating the association of specific TAP defects or alleles with immunity to intracellular pathogens and cancer in dogs.
- Published
- 2013
46. Platelets mediate lymphovenous hemostasis to maintain blood-lymphatic separation throughout life
- Author
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David R. Rawnsley, Jianxin Fu, Taija Makinen, Zoltán Jakus, Brett H. Herzog, Lijun Xia, Bernhard Nieswandt, Yiqing Yang, Daniel T. Sweet, MinMin Lu, Guillermo Oliver, Paul R. Hess, and Mark L. Kahn
- Subjects
Blood Platelets ,Pathology ,medicine.medical_specialty ,Platelet Aggregation ,Pyridines ,government.form_of_government ,Morpholines ,Aminopyridines ,Thoracic duct ,Thoracic Duct ,Mice ,Oxazines ,Medicine ,Animals ,Syk Kinase ,Lectins, C-Type ,Thrombus ,Lymphatic Vessels ,Mice, Knockout ,Fibrin ,Hemostasis ,business.industry ,Intracellular Signaling Peptides and Proteins ,Thrombosis ,General Medicine ,Anatomy ,Blood flow ,Protein-Tyrosine Kinases ,medicine.disease ,Intestines ,Lymphatic Endothelium ,Lymphatic system ,medicine.anatomical_structure ,Pyrimidines ,Regional Blood Flow ,government ,Venous Valves ,Lymph ,Lymph Nodes ,business ,Research Article - Abstract
Mammals transport blood through a high-pressure, closed vascular network and lymph through a low-pressure, open vascular network. These vascular networks connect at the lymphovenous (LV) junction, where lymph drains into blood and an LV valve (LVV) prevents backflow of blood into lymphatic vessels. Here we describe an essential role for platelets in preventing blood from entering the lymphatic system at the LV junction. Loss of CLEC2, a receptor that activates platelets in response to lymphatic endothelial cells, resulted in backfilling of the lymphatic network with blood from the thoracic duct (TD) in both neonatal and mature mice. Fibrin-containing platelet thrombi were observed at the LVV and in the terminal TD in wild-type mice, but not Clec2-deficient mice. Analysis of mice lacking LVVs or lymphatic valves revealed that platelet-mediated thrombus formation limits LV backflow under conditions of impaired valve function. Examination of mice lacking integrin-mediated platelet aggregation indicated that platelet aggregation stabilizes thrombi that form in the lymphatic vascular environment to prevent retrograde blood flow. Collectively, these studies unveil a newly recognized form of hemostasis that functions with the LVV to safeguard the lymphatic vascular network throughout life.
- Published
- 2013
47. Polymorphisms and tissue expression of the feline leukocyte antigen class I loci FLAI-E, FLAI-H, and FLAI-K
- Author
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Savannah G. Holmer, Jeffrey A. Frelinger, Peter S. Ross, Paul R. Hess, Adam Buntzman, and Jennifer C. Holmes
- Subjects
Genotype ,Immunology ,Molecular Sequence Data ,Locus (genetics) ,CD8-Positive T-Lymphocytes ,Major histocompatibility complex ,Polymorphism, Single Nucleotide ,Article ,Genetics ,Animals ,Amino Acid Sequence ,Allele ,Cloning, Molecular ,Genotyping ,Gene ,biology ,Histocompatibility Antigens Class I ,Complementarity Determining Regions ,Histocompatibility ,Hypervariable region ,Models, Animal ,Viruses ,biology.protein ,Cats ,Sequence Alignment - Abstract
Cytotoxic CD8+ T-cell immunosurveillance for intracellular pathogens, such as viruses, is controlled by classical major histocompatibility complex (MHC) class Ia molecules, and ideally, these antiviral T-cell populations are defined by the specific peptide and restricting MHC allele. Surprisingly, despite the utility of the cat in modeling human viral immunity, little is known about the feline leukocyte antigen class I complex (FLAI). Only a few coding sequences with uncertain locus origin and expression patterns have been reported. Of 19 class I genes, three loci--FLAI-E, FLAI-H, and FLAI-K--are predicted to encode classical molecules, and our objective was to evaluate their status by analyzing polymorphisms and tissue expression. Using locus-specific, PCR-based genotyping, we amplified 33 FLAI-E, FLAI-H, and FLAI-K alleles from 12 cats of various breeds, identifying, for the first time, alleles across three distinct loci in a feline species. Alleles shared the expected polymorphic and invariant sites in the α1/α2 domains, and full-length cDNA clones possessed all characteristic class Ia exons. Alleles could be assigned to a specific locus with reasonable confidence, although there was evidence of potentially confounding interlocus recombination between FLAI-E and FLAI-K. Only FLAI-E, FLAI-H, and FLAI-K origin alleles were amplified from cDNAs of multiple tissue types. We also defined hypervariable regions across these genes, which permitted the assignment of names to both novel and established alleles. As predicted, FLAI-E, FLAI-H, and FLAI-K fulfill the major criteria of class Ia genes. These data represent a necessary prerequisite for studying epitope-specific antiviral CD8+ T-cell responses in cats.
- Published
- 2013
48. Platelet ITAM signaling is critical for vascular integrity in inflammation
- Author
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Wolfgang Bergmeier, Paul R. Hess, Jerry Ware, Nigel Mackman, Mark L. Kahn, A. Phillip Owens, Moritz Stolla, Agnieszka Cholka, Todd M. Getz, and Yacine Boulaftali
- Subjects
Blood Platelets ,Male ,Mice, Transgenic ,Inflammation ,Platelet Membrane Glycoproteins ,Biology ,Platelet membrane glycoprotein ,Receptors, G-Protein-Coupled ,Mice ,medicine ,Animals ,Lectins, C-Type ,Protease-activated receptor ,Platelet ,Receptor ,Adaptor Proteins, Signal Transducing ,Mice, Knockout ,Hemostasis ,General Medicine ,Phosphoproteins ,Adoptive Transfer ,Thrombocytopenia ,Cell biology ,Mice, Inbred C57BL ,Immunology ,Blood Vessels ,Receptors, Thrombin ,medicine.symptom ,GPVI ,Signal transduction ,Research Article ,Signal Transduction - Abstract
Platelets play a critical role in maintaining vascular integrity during inflammation, but little is known about the underlying molecular mechanisms. Here we report that platelet immunoreceptor tyrosine activation motif (ITAM) signaling, but not GPCR signaling, is critical for the prevention of inflammation-induced hemorrhage. To generate mice with partial or complete defects in these signaling pathways, we developed a protocol for adoptive transfer of genetically and/or chemically inhibited platelets into thrombocytopenic (TP) mice. Unexpectedly, platelets with impaired GPCR signaling, a crucial component of platelet plug formation and hemostasis, were indistinguishable from WT platelets in their ability to prevent hemorrhage at sites of inflammation. In contrast, inhibition of GPVI or genetic deletion of Clec2, the only ITAM receptors expressed on mouse platelets, significantly reduced the ability of platelets to prevent inflammation-induced hemorrhage. Moreover, transfusion of platelets without ITAM receptor function or platelets lacking the adapter protein SLP-76 into TP mice had no significant effect on vascular integrity during inflammation. These results indicate that the control of vascular integrity is a major function of immune-type receptors in platelets, highlighting a potential clinical complication of novel antithrombotic agents directed toward the ITAM signaling pathway.
- Published
- 2013
49. The use of peptide-major-histocompatibility-complex multimers in type 1 diabetes mellitus
- Author
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Adam Buntzman, Greg S. Gojanovich, Ellen F. Young, Benjamin G. Vincent, Sabrina L. Murray, and Paul R. Hess
- Subjects
Endocrinology, Diabetes and Metabolism ,T cell ,T-Lymphocytes ,Population ,Biomedical Engineering ,Bioengineering ,chemical and pharmacologic phenomena ,Autoimmunity ,Major histocompatibility complex ,medicine.disease_cause ,Major Histocompatibility Complex ,Histocompatibility Antigens ,Internal Medicine ,medicine ,Animals ,Humans ,education ,education.field_of_study ,MHC class II ,Symposium ,biology ,Pancreatic islets ,T-cell receptor ,Histocompatibility ,Cell biology ,Molecular Imaging ,medicine.anatomical_structure ,Diabetes Mellitus, Type 1 ,Immunology ,biology.protein ,Immunotherapy ,Protein Multimerization ,Peptides ,Signal Transduction - Abstract
Major histocompatibility complex (MHC) class I and MHC class II molecules present short peptides that are derived from endogenous and exogenous proteins, respectively, to cognate T-cell receptors (TCRs) on the surface of T cells. The exquisite specificity with which T cells recognize particular peptide–major-histocompatibility-complex (pMHC) combinations has permitted development of soluble pMHC multimers that bind exclusively to selected T-cell populations. Because the pathogenesis of type 1 diabetes mellitus (T1DM) is driven largely by islet-reactive T-cell activity that causes β-cell death, these reagents are useful tools for studying and, potentially, for treating this disease. When coupled to fluorophores or paramagnetic nanoparticles, pMHC multimers have been used to visualize the expansion and islet invasion of T-cell effectors during diabetogenesis. Administration of pMHC multimers to mice has been shown to modulate T-cell responses by signaling through the TCR or by delivering a toxic moiety that deletes the targeted T cell. In the nonobese diabetic mouse model of T1DM, a pMHC-I tetramer coupled to a potent ribosome-inactivating toxin caused long-term elimination of a specific diabetogenic cluster of differentiation 8+ T-cell population from the pancreatic islets and delayed the onset of diabetes. This review will provide an overview of the development and use of pMHC multimers, particularly in T1DM, and describe the therapeutic promise these reagents have as an antigen-specific means of ameliorating deleterious T-cell responses in this autoimmune disease.
- Published
- 2012
50. Allelic diversity at the DLA-88 locus in Golden Retriever and Boxer breeds is limited
- Author
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Elise N. Grover, Peter S. Ross, Adam Buntzman, Paul R. Hess, Jeffrey A. Frelinger, Greg S. Gojanovich, Edward J. Collins, and Benjamin G. Vincent
- Subjects
Models, Molecular ,Immunology ,Population ,Molecular Sequence Data ,Locus (genetics) ,Breeding ,CD8-Positive T-Lymphocytes ,Major histocompatibility complex ,Biochemistry ,Article ,Dogs ,Gene Frequency ,Genetics ,Immunology and Allergy ,Animals ,Amino Acid Sequence ,Allele ,education ,Allele frequency ,Alleles ,Phylogeny ,education.field_of_study ,Polymorphism, Genetic ,biology ,Dog leukocyte antigen ,Haplotype ,Histocompatibility Antigens Class I ,Homozygote ,General Medicine ,Breed ,Haplotypes ,Genetic Loci ,biology.protein ,human activities ,Sequence Alignment - Abstract
In the dog, previous analyses of major histocompatibility complex (MHC) class I genes suggest a single polymorphic locus, Dog Leukocyte Antigen (DLA)-88. While 51 alleles have been reported, estimates of prevalence have not been made. We hypothesized that, within a breed, DLA-88 diversity would be restricted, and one or more dominant alleles could be identified. Accordingly, we determined allele usage in 47 Golden Retrievers and 39 Boxers. In each population, 10 alleles were found; 4 were shared. Seven novel alleles were identified. DLA-88*05101 and *50801 predominated in Golden Retrievers, while most Boxers carried *03401. In these breeds DLA-88 polymorphisms are limited and largely non-overlapping. The finding of highly prevalent alleles fulfills an important prerequisite for studying canine CD8+ T-cell responses.
- Published
- 2012
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