90 results on '"Paul Haggarty"'
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2. Epigenetic studies in children at risk of stunting and their parents in India, Indonesia and Senegal: a UKRI GCRF Action Against Stunting Hub protocol paper
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Graham W Horgan, Bharati Kulkarni, Babacar Faye, Little Flower Augustine, Anouschka S Ramsteijn, Paul Haggarty, Umi Fahmida, Min Kyaw Htet, Rajender Rao Kalashikam, Tiffany C Angelin, Mifa Nurfadilah, Nur L Zahra, Dwi Yanti, Aicha Djigal, Magatte Ndiaye, Dinesh Yadav DM, Manjula Gorre, Dantham Subrahamanyam, Sai Santhosh Vadakattu, and Manne Munikumar
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Pediatrics ,RJ1-570 - Published
- 2024
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3. Improving gut health and growth in early life: a protocol for an individually randomised, two-arm, open-label, controlled trial of a synbiotic in infants in Kaffrine District, Senegal
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Benjamin Momo Kadia, Stephen J Allen, Babacar Faye, Doudou Sow, Marietou Khouma, Anouschka S Ramsteijn, Beatriz Calvo-Urbano, Modou L Jobarteh, Elaine Ferguson, Paul Haggarty, Joanne P Webster, Alan W Walker, and Claire Heffernan
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Pediatrics ,RJ1-570 - Published
- 2024
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4. Anthropometric, biochemical, dietary, morbidity and well-being assessments in women and children in Indonesia, India and Senegal: a UKRI GCRF Action Against Stunting Hub protocol paper
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Benjamin Momo Kadia, Stephen Allen, Rebecca Pradeilles, Bharati Kulkarni, Babacar Faye, Alan Walker, Raghu Pullakhandam, Teena Dasi, Ravindranadh Palika, Santosh Kumar Banjara, Ibrahima Diallo, Elaine Ferguson, Paul Haggarty, Joanne P Webster, Claire Heffernan, Umi Fahmida, Min Kyaw Htet, Tiffany C Angelin, Modou Lamin Jobarteh, Hilary Davies-Kershaw, Kiruthika Selvaraj, Nur L Zahra, Dwi Yanti, Dewi Shinta, Radhika Madhari, Sylvia Fernandez Rao, Dharani Pratyusha Palepu, Dinesh Yadev, Saliou Diouf, Philomene Lopez-Sall, Babacar Diallo, Princillia Mouissi, Sally Fall, Aicha Djigal, Tabitha D Van Immerzeel, Fassia Tairou, Assana Diop, Sara Strout, and Darius Tetsa Tata
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Pediatrics ,RJ1-570 - Published
- 2024
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5. Eggs for Improving Nutrition, cognitive development and reducing linear growth retardation among Infants and young Children (ENRICH): protocol of an egg supplementation trial among children aged 9–18 months in Hyderabad, India
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Bharati Kulkarni, Little Flower Augustine, Raghu Pullakhandam, Teena Dasi, Ravindranadh Palika, Santosh Kumar Banjara, Elaine Ferguson, Paul Haggarty, Claire Heffernan, Rajender Rao Kalashikam, Modou Lamin Jobarteh, Hilary Davies-Kershaw, Kiruthika Selvaraj, Radhika Madhari, Sylvia Fernandez Rao, Dharani Pratyusha Palepu, Ramachandrappa Naveen Kumar, Sai Ram Challa, Monica Chilumula, and Preethi Gopinath
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Pediatrics ,RJ1-570 - Published
- 2024
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6. Assessment of the role of gut health in childhood stunting in a multisite, longitudinal study in India, Indonesia and Senegal: a UKRI GCRF Action Against Stunting Hub protocol
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Benjamin Momo Kadia, Stephen Allen, Bharati Kulkarni, Babacar Faye, Teena Dasi, Doudou Sow, Anouschka S Ramsteijn, Beatriz Calvo-Urbano, Elaine Ferguson, Paul Haggarty, Joanne P Webster, Alan W Walker, Claire Heffernan, Umi Fahmida, Min Kyaw Htet, Rajender Rao Kalashikam, Ritu Sharma, Arienta R P Sudibya, Sari Kusuma, Tiffany C Angelin, Mifa Nurfadilah, Modou Lamin Jobarteh, Ndeye Sokhna Diop, and Isobel Gabain
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Pediatrics ,RJ1-570 - Published
- 2024
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7. Imprinting methylation predicts hippocampal volumes and hyperintensities and the change with age in later life
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Marlene Lorgen-Ritchie, Alison D. Murray, Roger Staff, Anne C. Ferguson-Smith, Marcus Richards, Graham W. Horgan, Louise H. Phillips, Gwen Hoad, Chris McNeil, Antonio Ribeiro, and Paul Haggarty
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Medicine ,Science - Abstract
Abstract Epigenetic imprinting is important for neurogenesis and brain function. Hippocampal volumes and brain hyperintensities in late life have been associated with early life circumstances. Epigenetic imprinting may underpin these associations. Methylation was measured at 982 sites in 13 imprinted locations in blood samples from a longitudinal cohort by bisulphite amplicon sequencing. Hippocampal volumes and hyperintensities were determined at age 64y and 72y using MRI. Hyperintensities were determined in white matter, grey matter and infratentorial regions. Permutation methods were used to adjust for multiple testing. At 64y, H19/IGF2 and NESPAS methylation predicted hippocampal volumes. PEG3 predicted hyperintensities in hippocampal grey matter, and white matter. GNASXL predicted grey matter hyperintensities. Changes with age were predicted for hippocampal volume (MEST1, KvDMR, L3MBTL, GNASXL), white matter (MEST1, PEG3) and hippocampal grey matter hyperintensities (MCTS2, GNASXL, NESPAS, L3MBTL, MCTS2, SNRPN, MEST1). Including childhood cognitive ability, years in education, or socioeconomic status as additional explanatory variables in regression analyses did not change the overall findings. Imprinting methylation in multiple genes predicts brain structures, and their change over time. These findings are potentially relevant to the development of novel tests of brain structure and function across the life-course, strategies to improve cognitive outcomes, and our understanding of early influences on brain development and function.
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- 2021
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8. Imprinting methylation in SNRPN and MEST1 in adult blood predicts cognitive ability.
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Marlene Lorgen-Ritchie, Alison D Murray, Anne C Ferguson-Smith, Marcus Richards, Graham W Horgan, Louise H Phillips, Gwen Hoad, Ishbel Gall, Kristina Harrison, Geraldine McNeill, Mitsuteru Ito, and Paul Haggarty
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Medicine ,Science - Abstract
Genomic imprinting is important for normal brain development and aberrant imprinting has been associated with impaired cognition. We studied the imprinting status in selected imprints (H19, IGF2, SNRPN, PEG3, MEST1, NESPAS, KvDMR, IG-DMR and ZAC1) by pyrosequencing in blood samples from longitudinal cohorts born in 1936 (n = 485) and 1921 (n = 223), and anterior hippocampus, posterior hippocampus, periventricular white matter, and thalamus from brains donated to the Aberdeen Brain Bank (n = 4). MEST1 imprint methylation was related to childhood cognitive ability score (-0.416 95% CI -0.792,-0.041; p = 0.030), with the strongest effect evident in males (-0.929 95% CI -1.531,-0.326; p = 0.003). SNRPN imprint methylation was also related to childhood cognitive ability (+0.335 95%CI 0.008,0.663; p = 0.045). A significant association was also observed for SNRPN methylation and adult crystallised cognitive ability (+0.262 95%CI 0.007,0.517; p = 0.044). Further testing of significant findings in a second cohort from the same region, but born in 1921, resulted in similar effect sizes and greater significance when the cohorts were combined (MEST1; -0.371 95% CI -0.677,-0.065; p = 0.017; SNRPN; +0.361 95% CI 0.079,0.643; p = 0.012). For SNRPN and MEST1 and four other imprints the methylation levels in blood and in the five brain regions were similar. Methylation of the paternally expressed, maternally methylated genes SNRPN and MEST1 in adult blood was associated with cognitive ability in childhood. This is consistent with the known importance of the SNRPN containing 15q11-q13 and the MEST1 containing 7q31-34 regions in cognitive function. These findings, and their sex specific nature in MEST1, point to new mechanisms through which complex phenotypes such as cognitive ability may be inherited. These mechanisms are potentially relevant to both the heritable and non-heritable components of cognitive ability. The process of epigenetic imprinting-within SNRPN and MEST1 in particular-and the factors that influence it, are worthy of further study in relation to the determinants of cognitive ability.
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- 2019
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9. Correction: Imprinting methylation in SNRPN and MEST1 in adult blood predicts cognitive ability.
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Marlene Lorgen-Ritchie, Alison D Murray, Anne C Ferguson-Smith, Marcus Richards, Graham W Horgan, Louise H Phillips, Gwen Hoad, Ishbel Gall, Kristina Harrison, Geraldine McNeill, Mitsuteru Ito, and Paul Haggarty
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Medicine ,Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0211799.].
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- 2019
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10. DNA methyltransferase candidate polymorphisms, imprinting methylation, and birth outcome.
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Paul Haggarty, Gwen Hoad, Graham W Horgan, and Doris M Campbell
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Medicine ,Science - Abstract
BACKGROUND: Birth weight and prematurity are important obstetric outcomes linked to lifelong health. We studied a large birth cohort to look for evidence of epigenetic involvement in birth outcomes. METHODS: We investigated the association between birth weight, length, placental weight and duration of gestation and four candidate variants in 1,236 mothers and 1,073 newborns; DNMT1 (rs2162560), DNMT3A (rs734693), DNMT3B (rs2424913) and DNMT3L (rs7354779). We measured methylation of LINE1 and the imprinted genes, PEG3, SNRPN, and IGF2, in cord blood. RESULTS: The minor DNMT3L allele in the baby was associated with higher birth weight (+54 95% CI 10,99 g; p = 0.016), birth length (+0.23 95% CI 0.04,0.42 cm; p = 0.017), placental weight, (+18 95% CI 3,33 g; p = 0.017), and reduced risk of being in the lowest birth weight decile (p = 0.018) or requiring neonatal care (p = 0.039). The DNMT3B minor allele in the mother was associated with an increased risk of prematurity (p = 0.001). Placental size was related to PEG3 (p
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- 2013
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11. Human intelligence and polymorphisms in the DNA methyltransferase genes involved in epigenetic marking.
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Paul Haggarty, Gwen Hoad, Sarah E Harris, John M Starr, Helen C Fox, Ian J Deary, and Lawrence J Whalley
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Medicine ,Science - Abstract
Epigenetic mechanisms have been implicated in syndromes associated with mental impairment but little is known about the role of epigenetics in determining the normal variation in human intelligence. We measured polymorphisms in four DNA methyltransferases (DNMT1, DNMT3A, DNMT3B and DNMT3L) involved in epigenetic marking and related these to childhood and adult general intelligence in a population (n = 1542) consisting of two Scottish cohorts born in 1936 and residing in Lothian (n = 1075) or Aberdeen (n = 467). All subjects had taken the same test of intelligence at age 11yrs. The Lothian cohort took the test again at age 70yrs. The minor T allele of DNMT3L SNP 11330C>T (rs7354779) allele was associated with a higher standardised childhood intelligence score; greatest effect in the dominant analysis but also significant in the additive model (coefficient = 1.40(additive); 95%CI 0.22,2.59; p = 0.020 and 1.99(dominant); 95%CI 0.55,3.43; p = 0.007). The DNMT3L C allele was associated with an increased risk of being below average intelligence (OR 1.25(additive); 95%CI 1.05,1.51; p = 0.011 and OR 1.37(dominant); 95%CI 1.11,1.68; p = 0.003), and being in the lowest 40(th) (p(additive) = 0.009; p(dominant) = 0.002) and lowest 30(th) (p(additive) = 0.004; p(dominant) = 0.002) centiles for intelligence. After Bonferroni correction for the number variants tested the link between DNMT3L 11330C>T and childhood intelligence remained significant by linear regression and centile analysis; only the additive regression model was borderline significant. Adult intelligence was similarly linked to the DNMT3L variant but this analysis was limited by the numbers studied and nature of the test and the association was not significant after Bonferroni correction. We believe that the role of epigenetics in the normal variation in human intelligence merits further study and that this novel finding should be tested in other cohorts.
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- 2010
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12. Loss of deuterium in faecal solids and by sequestration in reindeer: effect on doubly labelled water studies
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Geir Gotaas, Eric Milne, Paul Haggarty, and Nicholas J.C. Tyler
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reindeer ,deuterium loss ,cervid ,energy expenditure ,oxygen-18 ,Rangifer ,Animal culture ,SF1-1100 - Abstract
An underlying assumption when estimating total energy expenditure (TEE) using doubly labelled water (DLW) is that the injected isotopes (lsO and 2H) leave the body only in the form of CO, and H20. However, both isotopes have additional routes of loss. We quantified the loss of 2H (i) attached to faecal solids and (ii) by sequestration into newly synthesised fat in reindeer (Rangifer tarandus tarandus). Estimates of the errors caused by these processes were applied to data from DLW studies with reindeer in summer and in winter. Given the net rate of faecal dry matter output and lipid synthesis in the present study, ignoring both sources of error caused the TEE of reindeer to be underestimated by approximately 5% in winter and approximately 9% in summer. The separate effect of each source of error was evaluated in summer. If ignored, loss of 2H through sequestration alone caused TEE to be underestimated by approximately 3.7%. Similarly, if ignored, loss of 2H attached to faecal solids alone caused TEE to be underestimated by approximately 5.9%.
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- 2000
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13. Quantifying the free living energy exchanges of Arctic ungulates with stable isotopes
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Paul Haggarty
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energy exchange ,arctic ungulates ,Animal culture ,SF1-1100 - Abstract
When natural diets meet an animal's requirement for energy, other essential nutrients will usually be supplied in amounts at least sufficient for survival. Knowledge of the energy requirements of free ranging species under typical conditions are important in assessing both their nutritional needs and their ecological impact. The doubly labelled water (DLW) method is currently the most promising objective field methodology for estimating free living energy expenditure but expenditure is only equal to the energy requirement when an animal is in energy balance. Reproduction and seasonal cycles of fat deposition and utilization represent significant components of the energy budget of arctic ungulates but the information gained in the course of a typical DLW study may be used to estimate processes such as milk output and fat storage and mobilization in order to predict requirements from expenditure. The DLW method has been exhaustively validated under highly controlled conditions and the introduction of innovations such as faecal sampling for the estimation of body water isotopic enrichment, the availability of appropriate correction factors and stoichiometrics for known sources of error, and iterative calculation of unknown parameters, have produced a methodology suitable for use in truly free ranging species. The few studies carried out so far in arctic ungulates indicate that previous predictions have generally underestimated the true level of expenditure, that there is considerable between animal variation in the level of expenditure and that this is largely determined by physical activity. The disadvantages of the DLW methodology are that it remains expensive and the isotope analysis is technically demanding. Furthermore, although DLW can provide an accurate value for free living energy expenditure, it is often important to have information on the individual components of expenditure, for example the relative contribution of physical activity and thermoregulatory thermogenesis, in order to interpret the values for overall expenditure. For these reasons the most valuable use of the DLW method in the field may be to validate factorial models and other approaches so that they may be used with confidence. Additional important information on the energy exchanges of free ranging animals may be obtained from other stable isotope methodologies. In addition to the use of the isotopes 2H and lsO in the DLW method, natural variations in the abundance of "C and 15N in the arctic environment may be exploited to study diet selection in truly free living arctic ungulates.
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- 2000
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14. Energy expenditure of free-living reindeer estimated by the doubly labelled water method
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Geir Gotaas, Eric Milne, Paul Haggarty, and Nicholas J.C. Tyler
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cervid ,energetics ,Rangifer ,reindeer ,doubly labelled water methos ,Animal culture ,SF1-1100 - Abstract
The doubly labelled water (DLW) method was used to measure total energy expenditure (TEE) in three male reindeer (Rangifer tarandus tarandus) aged 22 months in winter (February) while the animals were living unrestricted at natural mountain pasture in northern Norway (69°20'N). The concentrations of 2H and l8O were measured in water extracted from samples of faeces collecred from the animals 0.4 and 11.2 days after injection of the isotopes. Calculated rates of water flux and CO2-production were adjusted to compensate for estimated losses of 2H in faecal solids and in methane produced by microbial fermentation of forage in the rumen. The mean specific TEE in the three animals was 3.057 W.kg-1 (range 2.436 - 3.728 W.kg1). This value is 64% higher than TEE measured by the DLW method in four captive, non-pregnant adult female reindeer in winter and probably mainly reflects higher levels of locomotor activity in the free-living animals. Previous estimates of TEE in free-living Rangifer in winter based on factorial models range from 3.038 W.kg-1 in female woodland caribou (R. t. caribou) to 1.813 W.kg-1 in female Svalbard reindeer (R. t. platyrhynchus). Thus, it seems that existing factorial models are unlikely to overestimate TEE in reindeer/caribou: they may, instead, be unduly conservative. While the present study serves as a general validation of the factorial approach, we suggest that the route to progress in the understanding of field energetics in wild ungulates is via application of the DLW method.
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- 2000
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15. Nutrition in Epigenetics
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Mihai D. Niculescu, Paul Haggarty, Mihai D. Niculescu, Paul Haggarty and Mihai D. Niculescu, Paul Haggarty, Mihai D. Niculescu, Paul Haggarty
- Published
- 2011
16. UK introduces folic acid fortification of flour to prevent neural tube defects
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Paul Haggarty
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business.industry ,Flour ,Neural tube ,Infant, Newborn ,General Medicine ,United Kingdom ,Folic acid fortification ,medicine.anatomical_structure ,Folic Acid ,Pregnancy ,Food, Fortified ,medicine ,Humans ,Female ,Food science ,Neural Tube Defects ,business - Published
- 2021
17. Imprinting methylation predicts hippocampal volumes and hyperintensities and the change with age in later life
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Louise H. Phillips, Antonio Ribeiro, Christopher J. McNeil, Paul Haggarty, Alison D. Murray, Anne C. Ferguson-Smith, Marlene Lorgen-Ritchie, Roger T. Staff, Graham W. Horgan, Gwen Hoad, Marcus Richards, and Apollo - University of Cambridge Repository
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Epigenomics ,Male ,Science ,Brain Structure and Function ,Hippocampal formation ,Grey matter ,Biology ,Hippocampus ,Methylation ,Article ,Epigenesis, Genetic ,White matter ,Cohort Studies ,Genomic Imprinting ,medicine ,Humans ,Epigenetics ,Imprinting (psychology) ,Gray Matter ,Aged ,Multidisciplinary ,Cognitive ageing ,Age Factors ,Brain ,Imprinting ,Cognition ,DNA Methylation ,Middle Aged ,White Matter ,Hyperintensity ,medicine.anatomical_structure ,Cognitive Aging ,Medicine ,Female ,Neuroscience - Abstract
Funder: Rural and Environment Science and Analytical Services Division; doi: http://dx.doi.org/10.13039/100011310, Epigenetic imprinting is important for neurogenesis and brain function. Hippocampal volumes and brain hyperintensities in late life have been associated with early life circumstances. Epigenetic imprinting may underpin these associations. Methylation was measured at 982 sites in 13 imprinted locations in blood samples from a longitudinal cohort by bisulphite amplicon sequencing. Hippocampal volumes and hyperintensities were determined at age 64y and 72y using MRI. Hyperintensities were determined in white matter, grey matter and infratentorial regions. Permutation methods were used to adjust for multiple testing. At 64y, H19/IGF2 and NESPAS methylation predicted hippocampal volumes. PEG3 predicted hyperintensities in hippocampal grey matter, and white matter. GNASXL predicted grey matter hyperintensities. Changes with age were predicted for hippocampal volume (MEST1, KvDMR, L3MBTL, GNASXL), white matter (MEST1, PEG3) and hippocampal grey matter hyperintensities (MCTS2, GNASXL, NESPAS, L3MBTL, MCTS2, SNRPN, MEST1). Including childhood cognitive ability, years in education, or socioeconomic status as additional explanatory variables in regression analyses did not change the overall findings. Imprinting methylation in multiple genes predicts brain structures, and their change over time. These findings are potentially relevant to the development of novel tests of brain structure and function across the life-course, strategies to improve cognitive outcomes, and our understanding of early influences on brain development and function.
- Published
- 2021
18. Correction: Imprinting methylation in SNRPN and MEST1 in adult blood predicts cognitive ability
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Louise H. Phillips, Anne C. Ferguson-Smith, Paul Haggarty, Marlene Lorgen-Ritchie, Gwen Hoad, Marcus Richards, Mitsuteru Ito, Kristina Harrison, Graham W. Horgan, Geraldine McNeill, Ishbel Gall, and Alison D. Murray
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Genetics ,Multidisciplinary ,Text mining ,business.industry ,lcsh:R ,lcsh:Medicine ,Cognition ,lcsh:Q ,Methylation ,Biology ,Imprinting (psychology) ,business ,lcsh:Science - Abstract
[This corrects the article DOI: 10.1371/journal.pone.0211799.].
- Published
- 2019
19. Genetic and metabolic determinants of human epigenetic variation
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Paul Haggarty
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Epigenomics ,Genotype ,Nutritional Status ,Medicine (miscellaneous) ,Disease ,Motor Activity ,Biology ,Epigenesis, Genetic ,Genomic Imprinting ,Genetic variation ,Humans ,DNA (Cytosine-5-)-Methyltransferases ,Epigenetics ,Social Behavior ,Methylenetetrahydrofolate Reductase (NADPH2) ,Epigenesis ,Genetics ,Nutrition and Dietetics ,Genome, Human ,Genetic Variation ,Feeding Behavior ,Sequence Analysis, DNA ,Diet ,Infertility ,Gene-Environment Interaction ,Human genome ,Genomic imprinting - Abstract
Purpose of review Epigenetics has emerged in recent years as one of the most important biological mechanisms linking exposures across the life course to long-term health. This article reviews recent developments in our understanding of the metabolic and genetic determinants of epigenetic variation in human populations. Recent findings Epigenetic status is influenced by a range of environmental exposures, including diet and nutrition, social status, the early emotional environment, and infertility and its treatment. The period around conception is particularly sensitive to environmental exposures with evidence for effects on epigenetic imprinting within the offspring. Epigenetic status is also influenced by genotype, and genetic variation in methylene tetrahydrofolate reductase, and the DNA methytransferase and ten-eleven translocation methylcytosine dioxygenase proteins has been linked to the epigenetic status, biological function and disease. Summary Epigenetics is at the heart of a series of feedback loops linking the environment to the human genome in a way that allows crosstalk between the genome and the environment it exists within. It offers the potential for modification of adverse epigenetic states resulting from events/exposures at earlier life stages. We need to better understand the nutritional programming of epigenetic states, the persistence of these marks in time and their effect on biological function and health in current and future generations.
- Published
- 2015
20. GWAS-based pathway analysis differentiates between fluid and crystallized intelligence
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Albert Tenesa, Michael A. Horan, Astri J. Lundervold, Ian J. Deary, Sudheer Giddaluru, Stefan Herms, Manuel Mattheisen, Srdjan Djurovic, Vidar M. Steen, John M. Starr, Ivar Reinvang, Thomas Espeseth, D. C. Liewald, Andrea Christoforou, Carla P. D. Fernandes, Antony Payton, Neil Pendleton, Sarah E. Harris, William Ollier, Per Hoffman, S. Le Hellard, Sven Cichon, Gary Davies, and Paul Haggarty
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Adult ,Genetic Markers ,Male ,Adolescent ,Fluid and crystallized intelligence ,Intelligence ,Genome-wide association study ,Computational biology ,Biology ,Cognitive neuroscience ,Fluid intelligence ,Polymorphism, Single Nucleotide ,Behavioral Neuroscience ,Cognition ,ddc:570 ,Genetics ,Humans ,GWAS ,fluid intelligence ,Aged ,Genetic association ,Aged, 80 and over ,gene-based analysis ,Genome, Human ,Long-Term Synaptic Depression ,Original Articles ,Middle Aged ,Pathway analysis ,Genetic architecture ,Crystallized intelligence ,pathway analysis ,Neurology ,Female ,Metabolic Networks and Pathways ,Genome-Wide Association Study - Abstract
Cognitive abilities vary among people. About 40–50% of this variability is due to general intelligence (g), which reflects the positive correlation among individuals' scores on diverse cognitive ability tests. g is positively correlated with many life outcomes, such as education, occupational status and health, motivating the investigation of its underlying biology. In psychometric research, a distinction is made between general fluid intelligence (gF) – the ability to reason in novel situations – and general crystallized intelligence (gC) – the ability to apply acquired knowledge. This distinction is supported by developmental and cognitive neuroscience studies. Classical epidemiological studies and recent genome-wide association studies (GWASs) have established that these cognitive traits have a large genetic component. However, no robust genetic associations have been published thus far due largely to the known polygenic nature of these traits and insufficient sample sizes. Here, using two GWAS datasets, in which the polygenicity of gF and gC traits was previously confirmed, a gene- and pathway-based approach was undertaken with the aim of characterizing and differentiating their genetic architecture. Pathway analysis, using genes selected on the basis of relaxed criteria, revealed notable differences between these two traits. gF appeared to be characterized by genes affecting the quantity and quality of neurons and therefore neuronal efficiency, whereas long-term depression (LTD) seemed to underlie gC. Thus, this study supports the gF–gC distinction at the genetic level and identifies functional annotations and pathways worthy of further investigation. publishedVersion
- Published
- 2014
21. Epigenetic status in the offspring of spontaneous and assisted conception
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Natalie Whitelaw, Mark Hamilton, Gwen Hoad, Paul Haggarty, Siladitya Bhattacharya, and Graham W. Horgan
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Male ,Infertility ,medicine.medical_specialty ,Reproductive Techniques, Assisted ,Offspring ,medicine.medical_treatment ,media_common.quotation_subject ,Kruppel-Like Transcription Factors ,Fertility ,Fertilization in Vitro ,Reproductive technology ,Biology ,snRNP Core Proteins ,Intracytoplasmic sperm injection ,Epigenesis, Genetic ,Insulin-Like Growth Factor II ,Pregnancy ,Spontaneous conception ,medicine ,Humans ,Insulin ,Sperm Injections, Intracytoplasmic ,Child ,Retrospective Studies ,media_common ,Gynecology ,In vitro fertilisation ,Rehabilitation ,Pregnancy Outcome ,Infant ,Obstetrics and Gynecology ,DNA ,DNA Methylation ,medicine.disease ,Cross-Sectional Studies ,Long Interspersed Nucleotide Elements ,Reproductive Medicine ,Child, Preschool ,Fertilization ,Female - Abstract
STUDY QUESTION Is DNA methylation in buccal cell DNA from children born following IVF (in vitro fertilization) and ICSI (intra-cytoplasmic sperm injection) different from that of spontaneously conceived children? SUMMARY ANSWER DNA methylation in the imprinted gene, small nuclear ribonucleoprotein polypeptide N (SNRPN), was higher in children conceived by ICSI and in those born to women with the longest duration of infertility regardless of the method of conception. WHAT IS KNOWN ALREADY Fertility treatment is associated with a small but significant increase in the risk of a range of adverse obstetric outcomes, birth defects and longer term sequelae, but the biological basis for this is unknown. A growing evidence base suggests that epigenetics may play a role in subfertility and the link between fertility and health. STUDY DESIGN, SIZE, DURATION In this retrospective cohort study of children born between 2002 and 2008, we measured DNA methylation in paternally expressed gene 3 (PEG3), insulin-like growth factor II (IGF2), SNRPN, long interspersed nuclear element 1 (LINE1) and the insulin gene (INS) in buccal cell DNA from children born following IVF (n = 49) and ICSI (n = 20) and compared them with a matched spontaneous conception group (n = 86). PARTICIPANTS/MATERIALS, SETTING, METHODS Participants were identified from the Aberdeen Maternity and Neonatal Databank and IVF and ICSI pregnancies were matched to spontaneous conception pregnancies on year of birth and maternal age at delivery. Only singleton pregnancies following fresh embryo transfer were included. DNA methylation was determined by pyrosequencing. Regression with adjustment for covariates was used to determine the effect of infertility on offspring DNA methylation. MAIN RESULTS AND THE ROLE OF CHANCE SNRPN methylation in the offspring was linked to fertility treatment in the parents. This effect was specific to children conceived using ICSI and was apparent in the comparison of ICSI versus spontaneous conception (1.03%; 95% CI 0.10, 1.97; P = 0.031), ICSI versus standard IVF (1.13%; 95% CI 0.04, 2.23; P = 0.043) and ICSI versus standard IVF and spontaneous conception (1.05; 95% CI 0.15, 1.94; P = 0.023). In all comparisons, the use of ICSI was associated with a higher level of SNRPN methylation in the offspring. A higher level of SNRPN methylation in the offspring was also associated with a longer duration of infertility in the parents. This was observed in all cases of infertility (0.18% per year of infertility; 95% CI 0.02, 0.33; P = 0.026) and after excluding ICSI cases (0.21% per year of infertility; 95% CI 0.04, 0.37; P = 0.017). There was a significant increase in the level of LINE1 methylation with age between birth and 7 years (0.77% per year; 95% CI 0.49, 1.05; P < 0.001). Methylation in the INS gene decreased significantly over the same period (−0.46% per year; 95% CI −0.89, −0.03; P = 0.035). There was no evidence from this cross-sectional data that methylation within the imprinted genes changed over the first 7 years of life. LIMITATIONS, REASONS FOR CAUTION The ICSI sample size was limited but the groups were carefully selected and well matched and the SNRPN findings were consistent across different outcomes. WIDER IMPLICATIONS OF THE FINDINGS The results of this study provide support for a role for epigenetics, and imprinting in particular, in fertility. The specific changes point to possible long-term consequences of fertility treatment for the health and fertility of future generations. STUDY FUNDING/COMPETING INTEREST(S) The authors report no conflict of interest in relation to this work. Funding was provided by the University of Aberdeen and the Scottish Government.
- Published
- 2014
22. Meeting the fetal requirement for polyunsaturated fatty acids in pregnancy
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Paul Haggarty
- Subjects
Medicine (miscellaneous) ,Bioinformatics ,law.invention ,Cognition ,Fetus ,Randomized controlled trial ,Pregnancy ,law ,Fatty Acids, Omega-6 ,Fatty Acids, Omega-3 ,Birth Weight ,Humans ,Medicine ,Prenatal Nutritional Physiological Phenomena ,chemistry.chemical_classification ,Nutrition and Dietetics ,business.industry ,Nutritional Requirements ,medicine.disease ,chemistry ,Premature Birth ,Female ,business ,Long chain ,Polyunsaturated fatty acid - Abstract
The aim of this review is to summarize recent evidence on the importance of individual long chain polyunsaturated fatty acid (LCPUFA) to the developing fetus and the maternal dietary requirement for these.Large-scale randomized controlled trials and innovative genetic and stable isotope studies are providing new insights in this field.Large randomized controlled trials of LCPUFA supplementation in pregnancy suggest that higher n-3 LCPUFA intake reduces the risk of preterm birth and increases the length of gestation, with secondary effects on birth weight. There is little evidence of an effect on postnatal visual function and cognition, but interpretation is complicated by maternal metabolic adaptations and adipose tissue status in the newborn. The links between polymorphisms in the FADS genes and tissue fatty acid composition suggest that LCPUFA synthesis influences overall availability. Stable isotope studies have also demonstrated the capacity for LCPUFA synthesis in pregnancy, the fact that n-6 synthesis is greater than n-3, metabolic channeling of individual fatty acids to different fates, and selective placental transfer. Studies linking FADS genotype to cognition imply that n-3 LCPUFA synthesis could have an effect on infant cognition, but more large-scale genetic studies are needed.
- Published
- 2014
23. Folate in pregnancy and imprinted gene and repeat element methylation in the offspring
- Author
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Graham W. Horgan, Paul Haggarty, Gwen Hoad, Doris M. Campbell, Chandrika J. Piyathilake, and Geraldine McNeill
- Subjects
Adult ,Genotype ,Offspring ,Kruppel-Like Transcription Factors ,Medicine (miscellaneous) ,Biology ,snRNP Core Proteins ,Andrology ,Genomic Imprinting ,Folic Acid ,Insulin-Like Growth Factor II ,Pregnancy ,medicine ,Humans ,Neural Tube Defects ,Prospective Studies ,Epigenetics ,Nutrition and Dietetics ,Genome, Human ,DNA ,Maternal Nutritional Physiological Phenomena ,Sequence Analysis, DNA ,Methylation ,DNA Methylation ,Fetal Blood ,medicine.disease ,Molecular biology ,Diet ,Long Interspersed Nucleotide Elements ,Cord blood ,Dietary Supplements ,Multivariate Analysis ,DNA methylation ,Linear Models ,Female ,Genomic imprinting ,Small nuclear ribonucleoprotein - Abstract
Background: Epigenetic regulation of imprinted genes and transposable elements has been implicated in human disease and may be affected by maternal diet. Objective: The objective was to determine the effect on offspring epigenetic status of nutritional and genetic factors that influence folate exposure in pregnancy. Design: We measured folate intake from diet, the use of folic acid supplements and the period of consumption, maternal and cord red blood cell (RBC) folate, and genotypes for 5 methylation cycle enzymes in a prospective cohort study of pregnancies in the United Kingdom between 2000 and 2006. We related these to offspring methylation status within 3 maternally methylated imprinted genes: paternally expressed gene 3 (PEG3), insulin-like growth factor 2 (IGF2), and small nuclear ribonucleoprotein polypeptide N, and the long interspersed nuclear element 1 (LINE-1) in genomic DNA extracted from whole blood in 913 pregnancies. Results: Supplement use after 12 wk of gestation was associated with a higher level of methylation in IGF2 (+0.7%; 95% CI: 0.02, 1.4; P = 0.044) and reduced methylation in both PEG3 (20.5%; 95% CI: 20.9, 20.1; P = 0.018) and LINE-1 (20.3%; 95% CI: 20.6, 20.04; P = 0.029). The same pattern was observed in relation to RBC folate in the cord blood at birth: IGF2 (P = 0.038), PEG3 (P , 0.001), and LINE-1 (P , 0.001). LINE-1 methylation was related to maternal RBC folate (P = 0.001) at 19 wk. No effect of supplement use up to 12 wk (current recommendation) was found. Conclusions: Folic acid use after 12 wk of gestation influences offspring repeat element and imprinted gene methylation. We need to understand the consequences of these epigenetic effects. Am J Clin Nutr 2013;97:94‐9.
- Published
- 2013
24. A genome-wide association study implicates the APOE locus in nonpathological cognitive ageing
- Author
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John M. Starr, Lawrence J. Whalley, Chandra A. Reynolds, William Ollier, Catherine Murray, Nancy L. Pedersen, Alan J. Gow, Paul Haggarty, Lorna M. Lopez, Geraldine McNeill, Antony Payton, Helen C. Fox, David J. Porteous, Andrew Pickles, Paul Redmond, Ornit Chiba-Falek, A. D. Roses, Neil Pendleton, Michael A. Horan, Michael W. Lutz, Albert Tenesa, Ross Henderson, Gail Davies, Michelle Luciano, Chris P. Ponting, Peter M. Visscher, Alison Pattie, Xiayi Ke, Sunita Saith, Colton Linnertz, Ian J. Deary, Janie Corley, David C. Liewald, Sarah E. Harris, and Helen M. Knight
- Subjects
Male ,Apolipoprotein E ,Aging ,Single-nucleotide polymorphism ,Genome-wide association study ,Biology ,Polymorphism, Single Nucleotide ,Article ,Linkage Disequilibrium ,Cohort Studies ,Cellular and Molecular Neuroscience ,Apolipoproteins E ,Cognition ,Gene Frequency ,Mitochondrial Precursor Protein Import Complex Proteins ,medicine ,Humans ,Genetic Predisposition to Disease ,Cognitive decline ,Molecular Biology ,Genetic association ,Genetics ,Haplotype ,Membrane Transport Proteins ,medicine.disease ,Psychiatry and Mental health ,England ,Scotland ,Female ,Alzheimer's disease ,Genome-Wide Association Study - Abstract
Cognitive decline is a feared aspect of growing old. It is a major contributor to lower quality of life and loss of independence in old age. We investigated the genetic contribution to individual differences in nonpathological cognitive ageing in five cohorts of older adults. We undertook a genome-wide association analysis using 549 692 single-nucleotide polymorphisms (SNPs) in 3511 unrelated adults in the Cognitive Ageing Genetics in England and Scotland (CAGES) project. These individuals have detailed longitudinal cognitive data from which phenotypes measuring each individual's cognitive changes were constructed. One SNP - rs2075650, located in TOMM40 (translocase of the outer mitochondrial membrane 40 homolog) - had a genome-wide significant association with cognitive ageing (P=2.5 × 10 -8). This result was replicated in a meta-analysis of three independent Swedish cohorts (P=2.41 × 10 -6). An Apolipoprotein E (APOE) haplotype (adjacent to TOMM40), previously associated with cognitive ageing, had a significant effect on cognitive ageing in the CAGES sample (P=2.18 × 10 -8; females, P=1.66 × 10 -11; males, P=0.01). Fine SNP mapping of the TOMM40/APOE region identified both APOE (rs429358; P=3.66 × 10 -11) and TOMM40 (rs11556505; P=2.45 × 10 -8) as loci that were associated with cognitive ageing. Imputation and conditional analyses in the discovery and replication cohorts strongly suggest that this effect is due to APOE (rs429358). Functional genomic analysis indicated that SNPs in the TOMM40/APOE region have a functional, regulatory non-protein-coding effect. The APOE region is significantly associated with nonpathological cognitive ageing. The identity and mechanism of one or multiple causal variants remain unclear. © 2014 Macmillan Publishers Limited.
- Published
- 2016
25. Vitamin D in pregnancy at high latitude in Scotland
- Author
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Alan M. Wallace, Emma Boulton, Gwen Hoad, Doris M. Campbell, Susan Knox, Graham W. Horgan, Paul Haggarty, and Geraldine McNeill
- Subjects
Adult ,medicine.medical_specialty ,Season of birth ,Nutritional Status ,Medicine (miscellaneous) ,Gestational Age ,Pregnancy ,Internal medicine ,High latitude ,Vitamin D and neurology ,medicine ,Humans ,Vitamin D ,Calcifediol ,25-Hydroxyvitamin D 2 ,Sunlight ,Nutrition and Dietetics ,Obstetrics ,business.industry ,Dietary intake ,Infant, Newborn ,Gestational age ,Fetal Blood ,Vitamin D Deficiency ,medicine.disease ,Pregnancy Complications ,Endocrinology ,Scotland ,Dietary Supplements ,Gestation ,Female ,Seasons ,business - Abstract
The aims of the present study were to determine compliance with current advice on vitamin D and to assess the influence of season, dietary intake, supplement use and deprivation on vitamin D status in pregnant mothers and newborns in the north of Scotland where sunlight exposure is low. Pregnant women (n 1205) and their singleton newborns were studied in the Aberdeen Maternity Hospital (latitude 57°N) between 2000 and 2006. Plasma 25-hydroxyvitamin D2 and 25-hydroxyvitamin D3 were measured at 19 weeks of gestation in mothers and at delivery in newborns. During pregnancy, 21·0 (95 % CI 18·5, 23·5) % of women took vitamin D supplements. The median intake was 5 μg/d and only 0·6 (95 % CI 0·1, 1·0) % took the recommended 10 μg/d. Supplement use, adjusted for season, dietary intake and deprivation, significantly increased maternal 25-hydroxyvitamin D (25(OH)D) by 10·5 (95 % CI 5·7, 15·2) nmol/l (PPv. 23 (95 % CI 20, 26) %). More should be done to promote vitamin D supplement use in pregnancy but the critical importance of endogenous vitamin D synthesis, and known adaptations of fat metabolism specific to pregnancy, suggest that safe sun advice may be a useful additional strategy, even at high latitude.
- Published
- 2012
26. Genome-wide association studies establish that human intelligence is highly heritable and polygenic
- Author
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Lawrence J. Whalley, Jian Yang, Neil Pendleton, Antony Payton, Ivar Reinvang, Andrew Pickles, Albert Tenesa, Janie Corley, John M. Starr, Helen C. Fox, Andrea Christoforou, David J. Porteous, Alan J. Gow, D. C. Liewald, Michael A. Horan, Sarah E. Harris, William E R Ollier, Astri J. Lundervold, Paul Redmond, Thomas Espeseth, Paul Haggarty, Gail Davies, Michael E. Goddard, Ian J. Deary, Vidar M. Steen, Lorna M. Lopez, S. Le Hellard, Peter M. Visscher, Kevin A. McGhee, Xiayi Ke, Geraldine McNeill, and Michelle Luciano
- Subjects
Adult ,Male ,Multifactorial Inheritance ,Linkage disequilibrium ,Adolescent ,Intelligence ,Single-nucleotide polymorphism ,Genome-wide association study ,Quantitative trait locus ,Polymorphism, Single Nucleotide ,Article ,quantitative trait ,Cohort Studies ,Young Adult ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,Quantitative Trait, Heritable ,0302 clinical medicine ,Reference Values ,Genetic variation ,GWAS ,Humans ,genetics ,Longitudinal Studies ,Human height ,Child ,Molecular Biology ,Aged ,030304 developmental biology ,Aged, 80 and over ,Genetics ,0303 health sciences ,Genome, Human ,Human intelligence ,Middle Aged ,Heritability ,Psychiatry and Mental health ,Female ,Psychology ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
General intelligence is an important human quantitative trait that accounts for much of the variation in diverse cognitive abilities. Individual differences in intelligence are strongly associated with many important life outcomes, including educational and occupational attainments, income, health and lifespan. Data from twin and family studies are consistent with a high heritability of intelligence, but this inference has been controversial. We conducted a genome-wide analysis of 3511 unrelated adults with data on 549692 single nucleotide polymorphisms (SNPs) and detailed phenotypes on cognitive traits. We estimate that 40% of the variation in crystallized-type intelligence and 51% of the variation in fluid-type intelligence between individuals is accounted for by linkage disequilibrium between genotyped common SNP markers and unknown causal variants. These estimates provide lower bounds for the narrow-sense heritability of the traits. We partitioned genetic variation on individual chromosomes and found that, on average, longer chromosomes explain more variation. Finally, using just SNP data we predicted B1% of the variance of crystallized and fluid cognitive phenotypes in an independent sample (P=0.009 and 0.028, respectively). Our results unequivocally confirm that a substantial proportion of individual differences in human intelligence is due to genetic variation, and are consistent with many genes of small effects underlying the additive genetic influences on intelligence. Molecular Psychiatry advance online publication, 9 August 2011; doi:10.1038/mp.2011.85
- Published
- 2011
27. Epigenetics, Nutrition, and Reproduction: Short‐ and Long‐Term Consequences
- Author
-
Paul Haggarty
- Subjects
Genetics ,Reproduction (economics) ,medicine ,Cancer ,Epigenetics ,Biology ,Bioinformatics ,medicine.disease ,Term (time) - Published
- 2011
28. Introduction
- Author
-
Mihai D. Niculescu and Paul Haggarty
- Published
- 2011
29. Changes in foetal liver T2* measurements by MRI in response to maternal oxygen breathing: application to diagnosing foetal growth restriction
- Author
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N. C. Smith, Thomas William Redpath, Paul Haggarty, Scott Ian Kay Semple, David M. Morris, John A S Ross, David Abramovich, Alexandra McVicar, and Fiona J. Gilbert
- Subjects
medicine.medical_specialty ,Time Factors ,Physiology ,Biomedical Engineering ,Biophysics ,Mothers ,Gestational Age ,Foetal liver ,Fetus ,Pregnancy ,Physiology (medical) ,Oxygen breathing ,Respiration ,Foetal growth ,medicine ,Humans ,reproductive and urinary physiology ,Fetal Growth Retardation ,medicine.diagnostic_test ,Obstetrics ,business.industry ,Gestational age ,Magnetic resonance imaging ,medicine.disease ,Magnetic Resonance Imaging ,Oxygen ,Liver ,embryonic structures ,Linear Models ,Blood oxygenation ,Female ,business - Abstract
The motivation of the project was to investigate the use of oxygen-challenge magnetic resonance imaging (OC-MRI) as a method of diagnosing foetal growth restriction. Foetal growth restriction is associated with restricted foetal oxygen supply and is also associated with increased risks of perinatal mortality and morbidity, and a number of serious and chronic health problems. Measurements of T2* relaxation time, an MRI parameter which increases with blood oxygenation, were made in the right lobe of the foetal liver in 80 singleton pregnancies, before and after the mother breathed oxygen. The groups consisted of 41 foetuses with normal growth and 39 with apparent growth restriction. The mean +/- SD gestational age at scanning was 35 +/- 3 weeks. Changes in foetal liver T2* on maternal oxygen breathing showed no significant difference between the groups therefore the OC-MRI protocol used in this study has no value in the diagnosis of foetal growth restriction. A secondary finding was that a significant positive correlation of T2* change with gestational age was observed. Future studies on the use of oxygen-challenge MRI to investigate foetal growth restriction may therefore need to control for gestational age at the time of MR scanning in order to observe any underlying foetal growth-related effects.
- Published
- 2010
30. Fatty Acid Supply to the Human Fetus
- Author
-
Paul Haggarty
- Subjects
medicine.medical_specialty ,Offspring ,Placenta ,Medicine (miscellaneous) ,Adipose tissue ,Gestational Age ,Biology ,Fetal Development ,Fetus ,Pregnancy ,Internal medicine ,medicine ,Humans ,Maternal-Fetal Exchange ,Prenatal Nutritional Physiological Phenomena ,chemistry.chemical_classification ,Nutrition and Dietetics ,Nutritional Requirements ,Fatty acid ,Maternal Nutritional Physiological Phenomena ,medicine.disease ,Endocrinology ,Adipose Tissue ,chemistry ,Docosahexaenoic acid ,Fatty Acids, Unsaturated ,Gestation ,Female ,Polyunsaturated fatty acid - Abstract
Deposition of fat in the fetus increases exponentially with gestational age, reaching its maximal rate—around 7 g/day or 90% of energy deposition—at term. In late pregnancy, many women consuming contemporary Western diets may not be able to meet the fetal demand for n-3 long chain polyunsaturated fatty acids (LCPUFAs) from the diet alone. Numerous mechanisms have evolved to protect human offspring from extreme variation or deficiency in the maternal diet during pregnancy. Maternal adipose tissue is an important source of LCPUFA. Temporal changes in placental function are synchronized with maternal metabolic and physiological changes to ensure a continuous supply of n-3 and n-6 LCPUFA-enriched fat to the fetus. LCPUFA storage in fetal adipose tissue provides an important source of LCPUFA during the critical first months of postnatal life. An appreciation of these adaptations is important in any nutritional strategy designed to improve the availability of fatty acids to the fetus.
- Published
- 2010
31. Diet and deprivation in pregnancy
- Author
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Susan J. Duthie, Doris M. Campbell, Gwen Hoad, Paul Haggarty, Katherine Andrews, Chandrika J. Piyathilake, and Geraldine McNeill
- Subjects
Adult ,Male ,medicine.medical_specialty ,Birth weight ,Population ,Carbohydrates ,Medicine (miscellaneous) ,Physiology ,Cohort Studies ,Pregnancy ,Internal medicine ,medicine ,Humans ,Oily fish ,education ,Poverty ,education.field_of_study ,Nutrition and Dietetics ,business.industry ,Infant, Newborn ,Pregnancy Outcome ,Gestational age ,Maternal Nutritional Physiological Phenomena ,Vitamins ,Infant, Low Birth Weight ,medicine.disease ,Ascorbic acid ,Diet ,B vitamins ,Low birth weight ,Endocrinology ,Scotland ,Female ,medicine.symptom ,business - Abstract
Deprivation is associated with poor pregnancy outcome but the role of nutrition as a mediating factor is not well understood. We carried out a prospective cohort study of 1461 singleton pregnancies in Aberdeen, UK during 2000–6. We measured nutrient intake and supplement use, B vitamin and homocysteine status, birth weight, gestational age, neonatal treatment and socio-economic deprivation status. Women in the most deprived deciles were approximately 6 years younger and half as likely to take folic acid supplements periconceptually as the least deprived mothers. Deprivation was associated with low blood folate, high homocysteine and diets low in protein, fibre and many of the vitamins and minerals. The diets of the more deprived women were also characterised by low intakes of fruit, vegetables and oily fish and higher intakes of processed meat, fried potatoes, crisps and snacks. Deprivation was related to preterm birth (OR 1·14 (95 % CI 1·03, 1·25); P = 0·009) and whether the baby required neonatal treatment (OR 1·07 (95 % CI 1·01, 1·14); P = 0·028). Low birth weight was more common in women consuming diets low in vitamin C (OR 0·79 (95 % CI 0·64, 0·97); P = 0·028), riboflavin (OR 0·77 (95 % CI 0·63, 0·93); P = 0·008), pantothenic acid (OR 0·79 (95 % CI 0·65, 0·97); P = 0·023) and sugars (OR 0·78 (95 % CI 0·64, 0·96); P = 0·017) even after adjustment for deprivation index, smoking, marital status and parity. Deprivation in pregnancy is associated with diets poor in specific nutrients and poor diet appears to contribute to inequalities in pregnancy outcome. Improving the nutrient intake of disadvantaged women of childbearing age may potentially improve pregnancy outcome.
- Published
- 2009
32. B-vitamins, genotype and disease causality
- Author
-
Paul Haggarty
- Subjects
B vitamins ,Nutrition and Dietetics ,Environmental health ,Confounding ,Genotype ,MEDLINE ,Medicine (miscellaneous) ,Observational study ,Disease ,Nutritional information ,Psychology ,Causality - Abstract
Despite a great deal of research effort there is still considerable uncertainty surrounding the importance of the B-vitamins in health and disease. This continuing uncertainty is partly a result of the difficulty of measuring intake, confounding in observational studies and the very large numbers required to evaluate primary prevention in randomised controlled trials. Consequently, genetic data are increasingly being used to infer nutritional effects on health and even in the formulation of nutrition policy using the approach of ‘mendelian randomisation’. Genetic information has already contributed greatly to the understanding of B-vitamin metabolism and the heterogeneity of responses to intake. It has the potential to provide further nutritional insights and to assist in the elucidation of causal mechanisms, but it is important that genetic data is not viewed as an alternative to nutritional information, both are necessary when addressing nutritional problems. Similarly, the interpretation of nutrient and biomarker status in some experimental designs may require knowledge of genotype. Formal tests of gene–gene and gene–nutrient interaction are of limited value in nutritional studies and the formulation of policy. Graphical representation of diet–genotype–health data greatly assists in the elucidation of the nature of genetic effects, their interaction with nutrition and the implications for nutrition policy.
- Published
- 2007
33. Breast cancer risk and imprinting methylation in blood
- Author
-
Paul Haggarty, Louise Simpson, Kristina Harrison, E Smyth, Paula Scott, Graham W. Horgan, Gwen Hoad, and Steven D. Heys
- Subjects
Oncology ,Invasive ductal carcinoma ,medicine.medical_specialty ,Bioinformatics ,Methylation ,Breast cancer ,Internal medicine ,Genetics ,medicine ,Imprinting (psychology) ,skin and connective tissue diseases ,Molecular Biology ,Genetics (clinical) ,business.industry ,Research ,Ductal carcinoma in situ ,Imprinting ,Odds ratio ,Ductal carcinoma ,medicine.disease ,DNA methylation ,Etiology ,Genomic imprinting ,business ,Developmental Biology - Abstract
Background Altered DNA methylation of imprinted genes has been implicated in a range of cancers. Imprinting is established early in development, and some are maintained throughout the life course in multiple tissues, providing a plausible mechanism linking known early life factors to cancer risk. This study investigated methylation status of seven imprinted differentially methylated regions—PLAGL1/ZAC1, H19-ICR1, IGF2-DMR2, KvDMR-ICR2, RB1, SNRPN-DMR1 and PEG3—in blood samples from 189 women with the most common type of invasive breast cancer (invasive ductal carcinoma—IDC), 41 women with in situ breast cancer (ductal carcinoma in situ—DCIS) and 363 matched disease-free controls. Results There was no evidence that imprinted gene methylation levels varied with age (between 25 and 87 years old), weight or height. Higher PEG3 methylation was associated with an elevated risk of IDC (odds ratio (OR) 1.065; 95 % confidence interval (CI) 1.002, 1.132; p = 0.042) and DCIS (OR 1.139; 95 % CI 1.027, 1.263; p = 0.013). The effect was stronger when in situ and invasive breast cancer were combined (OR 1.079; 95 % CI 1.020, 1.142; p = 0.008). DCIS breast cancer risk increased with higher KvDMR-ICR2 methylation (OR 1.395; 95 % CI 1.190, 1.635; p
- Published
- 2015
34. Effect of B vitamins and genetics on success of in-vitro fertilisation: prospective cohort study
- Author
-
Neva E. Haites, D. M. Campbell, Susan J. Duthie, Sohinee Bhattacharya, Allan Templeton, H. Mccallum, K. Andrews, H. Mcbain, Paul Haggarty, and Geraldine McNeill
- Subjects
medicine.medical_specialty ,Hyperhomocysteinemia ,Genotype ,medicine.medical_treatment ,Twins ,Fertilization in Vitro ,Biology ,Chorionic Gonadotropin ,Folic Acid ,Pregnancy ,medicine ,Humans ,Prospective Studies ,Prospective cohort study ,Methylenetetrahydrofolate Reductase (NADPH2) ,Twin Pregnancy ,Genetics ,In vitro fertilisation ,Obstetrics ,Pregnancy Outcome ,General Medicine ,medicine.disease ,Embryo transfer ,Diet ,Vitamin B 12 ,B vitamins ,Logistic Models ,Infertility ,Gestation ,Female - Abstract
Summary Background There is a need to understand what affects the success of in-vitro fertilisation (IVF) and the rate of resulting twin births so that pregnancy rates can be improved and multiple gestations avoided. Our aim was to assess the role of B vitamins and genetics. Methods We did a prospective cohort study of 602 women undergoing fertility treatment. We assessed intake of folate and vitamin B12 with a questionnaire and measured their plasma and red-blood-cell concentrations by radioimmunoassay. We measured five B-vitamin-related gene variants in women who received treatment and in 932 women who conceived naturally. Findings The likelihood of a twin birth after IVF rose with increased concentrations of plasma folate (1·52, 1·01–2·28; p=0·032) and red-cell folate (1·28, 1·00–1·65; p=0·039). There was no association between folate and vitamin B12 levels and likelihood of a successful pregnancy. Women homozygous for the 1298 CC variant of methylenetetrahydro-folate reductase ( MTHFR ), rather than the AA variant, were less likely to produce a livebirth after IVF (0·24, 0·08–0·71; p=0·003) or to have had a previous pregnancy (0·42, 0·21–0·81; p=0·008). Interpretation Our findings suggest that MTHFR genotype is linked to a woman's potential to produce healthy embryos (possibly through interaction with genes related to DNA methylation). In women likely to have a successful IVF pregnancy, high folate status increases the likelihood of twin birth after multiple embryo transfer. Proposals to fortify the UK diet with folic acid could lead to an increase in the number of twins born after IVF.
- Published
- 2006
35. The influence of birth weight and genetic factors on lipid levels: a study in adult twins
- Author
-
Iain Broom, Doris M. Campbell, William James Mutch, Geraldine McNeill, Paul Haggarty, Chuluuntulga Tuya, Alastair M. Cumming, and Kevin Kelly
- Subjects
Adult ,Male ,Birth weight ,Twins ,cardiovascular-disease ,Medicine (miscellaneous) ,Physiology ,Gestational Age ,Biology ,metabolic syndrome ,Body Mass Index ,fetal origins ,blood-pressure ,Twins, Dizygotic ,medicine ,Birth Weight ,Humans ,Triglycerides ,risk ,Genetics ,Nutrition and Dietetics ,medicine.diagnostic_test ,Singleton ,Body Weight ,Confounding ,association ,birth weight ,Gestational age ,twins ,density-lipoprotein cholesterol ,Twins, Monozygotic ,Middle Aged ,medicine.disease ,Lipids ,Cholesterol ,In utero ,Case-Control Studies ,catch-up growth ,Regression Analysis ,lipid levels ,Female ,women ,Metabolic syndrome ,coronary-heart-disease ,Parity (mathematics) ,Lipid profile - Abstract
Twins can be used to investigate the biological basis for observed associations between birth weight and later disease risk, as they experiencein uterogrowth restriction compared with singletons, which can differ in magnitude within twin pairs despite partial or total genetic identity. In the present study, sixty monozygotic and seventy-one dizygotic same-sex twin pairs aged 19–50 years and eighty-nine singleton controls matched for age, gestational age, sex, maternal age and parity were recruited from an obstetric database. Associations between fasting lipid levels and birth weight were assessed by linear regression with adjustment for possible confounding factors. Twins were significantly lighter at birth but were not significantly different in adult height, weight or lipid levels from the singleton controls. There was a significant inverse association between birth weight and both total and LDL-cholesterol levels among singleton controls (−0·53mmol/l per kg (95% CI −0·97, −0·09),P=0·02 and −0·39mmol/l per kg (95% CI −0·76, −0·02),P=0·04, respectively), but there was no significant association between birth weight and lipid levels in either unpaired or within-pair analysis of twins. The results suggest that thein uterogrowth restriction and early catch-up growth experienced by twins does not increase the risk of an atherogenic lipid profile in adult life.
- Published
- 2006
36. Description and validation of the ActiReg®: a novel instrument to measure physical activity and energy expenditure
- Author
-
Arne Løvø, Alf Christophersen, Paul Haggarty, Heidi Tomten, Geraldine McNeill, Lene R. Johnsen, and Bo-Egil Hustvedt
- Subjects
Adult ,Male ,Ergometry ,Movement ,Physical Exertion ,Posture ,Physical activity ,Medicine (miscellaneous) ,Doubly labeled water ,Heart Rate ,Statistics ,Calibration ,Humans ,Motion sensors ,Mathematics ,Measure (data warehouse) ,Nutrition and Dietetics ,Data collection ,Calorimetry, Indirect ,Equipment Design ,Energy expenditure ,Personal computer ,Exercise Test ,Female ,Energy Metabolism ,Software - Abstract
The ActiReg® (PreMed AS, Oslo, Norway) system is unique in using combined recordings of body position and motion alone or combined with heart rate (HR) to calculate energy expenditure (EE) and express physical activity (PA). The ActiReg® has two pairs of position and motion sensors connected by cables to a battery-operated storage unit fixed to a waist belt. Each pair of sensors was attached by medical tape to the chest and to the front of the right thigh respectively. The collected data were transferred to a personal computer and processed by a dedicated program ActiCalc®. Calculation models for EE with and without HR are presented. The models were based on literature values for the energy costs of different activities and therefore require no calibration experiments. The ActiReg® system was validated against doubly labelled water (DLW) and indirect calorimetry. The DLW validation demonstrated that neither EE calculated from ActiReg® data alone (EEAR) nor from combined ActiReg® and HR data (EEAR–HR) were statistically different from DLW results. The EEAR procedure causes some underestimation of EE >11 MJ corresponding to a PA level >2·0. This underestimation is reduced by the EEAR–HR procedure. The objective recording of the time spent in different body positions and at different levels of PA may be useful in studies of PA in different groups and in studies of whether recommendations for PA are being met. The comparative ease of data collection and calculation should make ActiReg® a useful instrument to measure habitual PA level and EE.
- Published
- 2004
37. Ponderal index is a poor predictor of in utero growth retardation
- Author
-
E.S. Gray, A. Bendomir, Paul Haggarty, Doris M. Campbell, and David Abramovich
- Subjects
Male ,medicine.medical_specialty ,Birth weight ,Population ,Crown-Rump Length ,Sex Factors ,Pregnancy ,Risk Factors ,Prenatal Diagnosis ,medicine ,Humans ,education ,Full Term ,Fetus ,education.field_of_study ,Fetal Growth Retardation ,Obstetrics ,business.industry ,Body Weight ,Obstetrics and Gynecology ,Gestational age ,Stepwise regression ,Anthropometry ,medicine.disease ,Surgery ,Skinfold Thickness ,Cross-Sectional Studies ,Regression Analysis ,Female ,business - Abstract
Objective To evaluate the usefulness of ponderal index (PI) and related indices of weight and length in identifying asymmetric growth, body thinness and organ asymmetry associated with IUGR. Design Cross sectional study. Setting Aberdeen Maternity Hospital. Population The population includes term (≥37 weeks) singleton live births (n= 53,934) between 1986 and 1996, ultrasound measurements in 2522 pregnancies, 712 unselected term pregnancies in 1979/1980 and stillbirths (24–36 weeks) between 1986 and 1995 where the fetus was diagnosed as suffering from acute (n= 73) or chronic (n= 30) anoxic death. Methods The strength of association between direct measures of IUGR and various indices of weight and length was determined by linear and multiple stepwise linear regression. Main outcome measures Weight, length, PI and skinfold thicknesses (triceps, biceps, flank thighs, back) were measured at birth. Abdominal circumference, biparietal diameter and femur length were measured by ultrasound at ≥37 weeks. Ratio of liver, heart and kidney to brain were measured in stillbirths. Results Weight alone was a better predictor of skinfold thickness, abdominal circumference and the ratio of abdominal circumference to biparietal diameter than weight divided by length raised to the power 1, 2, 3 (PI), 4 or 5. The inclusion of gestational age made little difference to the predictive ability of weight for these full term births. Weight, but not PI, was significantly different between the two groups of stillborn fetuses (chronic and acute), which had significantly different (P < 0.001) organ ratios. Conclusion Body weight alone was a better predictor of anthropometric ratios, organ asymmetry and measures of thinness at birth thought to be associated with IUGR than the PI. The inclusion of a length term generally reduced the predictive ability with the highest powers resulting in the poorest prediction.
- Published
- 2004
38. Placental Regulation of Fatty Acid Delivery and its Effect on Fetal Growth—A Review
- Author
-
Paul Haggarty
- Subjects
Adult ,medicine.medical_specialty ,Placenta ,Gestational Age ,Biology ,Fatty Acid-Binding Proteins ,Fatty acid-binding protein ,Embryonic and Fetal Development ,Syncytiotrophoblast ,Pregnancy ,Internal medicine ,medicine ,Humans ,adipocyte protein 2 ,Maternal-Fetal Exchange ,reproductive and urinary physiology ,chemistry.chemical_classification ,Fetus ,Tumor Suppressor Proteins ,Obstetrics and Gynecology ,Fatty acid ,Biological Transport ,Neoplasm Proteins ,medicine.anatomical_structure ,Endocrinology ,Reproductive Medicine ,chemistry ,Docosahexaenoic acid ,embryonic structures ,Fatty Acids, Unsaturated ,biology.protein ,Female ,Carrier Proteins ,Fatty Acid-Binding Protein 7 ,Developmental Biology ,Polyunsaturated fatty acid - Abstract
More than 90 per cent of the fat deposition in the fetus occurs in the last 10 weeks of pregnancy during which it increases exponentially to reach a rate of accretion of around 7g/day close to term. All of the n -3 and n -6 fatty acid structure acquired by the fetus has to cross the placenta and fetal blood is enriched in long chain polyunsaturated fatty acids (LCPUFA) relative to the maternal supply. The placenta may regulate its own fatty acid substrate supply via the action of placental leptin on maternal adipose tissue. Fatty acids cross the microvillous and basal membranes by simple diffusion and via the action of membrane bound and cytosolic fatty acid binding proteins (FABPs). The direction and magnitude of fatty acid flux is mainly dictated by the relative abundance of available binding sites. The fatty acid mix delivered to the fetus is largely determined by the fatty acid composition of the maternal blood although the placenta is able to preferentially transfer the important PUFA to the fetus as a result of selective uptake by the syncytiotrophoblast, intracellular metabolic channelling of individual fatty acids, and selective export to the fetal circulation. Placental FABP polymorphisms may affect these processes. There is little evidence to suggest that placental delivery of fatty acids limits normal fetal growth although the importance of the in utero supply may be to support post-natal development as most of the LCPUFA accumulated by the fetus is stored in the adipose tissue for use in early post-natal life.
- Published
- 2002
39. The effect of maternal smoking and ethanol on fatty acid transport by the human placenta
- Author
-
David Abramovich, Paul Haggarty, and Kenneth Robert Page
- Subjects
medicine.medical_specialty ,Docosahexaenoic Acids ,Placenta ,Medicine (miscellaneous) ,Alcohol ,Biology ,chemistry.chemical_compound ,Pregnancy ,Internal medicine ,medicine ,Humans ,Maternal-Fetal Exchange ,chemistry.chemical_classification ,Arachidonic Acid ,Nutrition and Dietetics ,Ethanol ,alpha-Linolenic acid ,Smoking ,alpha-Linolenic Acid ,Fatty acid ,Metabolism ,Endocrinology ,medicine.anatomical_structure ,Biochemistry ,chemistry ,Docosahexaenoic acid ,Fatty Acids, Unsaturated ,Female ,Arachidonic acid ,Polyunsaturated fatty acid - Abstract
The role of the placenta in controlling the supply of fatty acids to the fetus was investigated in term placentas from non-smokers (n5), smokers (>ten cigarettes/d;n5) and after addition of ethanol at 2 mg/ml (n4). The maternal side was of the placenta was perfusedex vivofor 90 min with a physiological mixture of fatty acids and fatty acid:human albumin ratio. There was no effect of smoking on the transfer of linoleic (LA, 18 : 2n-6), α-linolenic (αLN, 18 : 3n-3), arachidonic (AA, 20 : 4n-6) or docosahexaenoic acid (DHA, 22 : 6n-3), expressed per perfused area (calculated from H218O exchange). However, the presence of ethanol in the perfusate at a concentration of 2 mg/ml significantly reduced (Pn-3 polyunsaturated fatty acids, αLN and DHA. This specific effect of ethanol on αLN and DHA also resulted in an altered selectivity for transfer of individual fatty acids. In the non-smoking control group the placenta selectively transferred polyunsaturated fatty acids to the fetus in the order DHA>AA>αLN>LA. The order of selectivity was unaltered in placentas from smokers, but the addition of ethanol to the perfusion medium altered the order of selectivity to AA>αLN>LA>DHA. The presence of ethanol in the perfusate was also associated with a significant reduction (P218O. These results suggest that the presence of ethanol at a concentration of 2 mg/ml may reduce the availability of polyunsaturated fatty acids to the developing fetus.
- Published
- 2002
40. Placental Nutrient Transfer Capacity and Fetal Growth
- Author
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G. Hoad, David Abramovich, S. Allstaff, J Ashton, and Paul Haggarty
- Subjects
Adult ,medicine.medical_specialty ,Placenta ,Birth weight ,Gestational Age ,In Vitro Techniques ,Biology ,Embryonic and Fetal Development ,Pregnancy ,Fetal membrane ,Internal medicine ,medicine ,Birth Weight ,Humans ,Maternal-Fetal Exchange ,chemistry.chemical_classification ,Fetus ,Obstetrics and Gynecology ,Fatty acid ,Gestational age ,Organ Size ,medicine.disease ,Perfusion ,Glucose ,Endocrinology ,medicine.anatomical_structure ,Reproductive Medicine ,chemistry ,embryonic structures ,Fatty Acids, Unsaturated ,Gestation ,Female ,Developmental Biology - Abstract
The objective of this study was to determine whether the ability of the human placenta to transfer glucose and fatty acids is related to normal fetal growth. The intrinsic nutrient transport capacity of the placenta was measured under standardized conditions during in vitro perfusion of 30 human term placentas and related to birth weight (range 2640–4640g), birth weight centile (8th–99th), ponderal index (2.43–3.69), placental weight (418–1030g) and placental:fetal weight (0.14–0.31). There was no statistically significant change in the rate of nutrient transfer per placenta or per kg fetal weight, with birth weight, birth weight centile, ponderal index, placental weight and placental:fetal weight. There was a weak but significant relationship ( P =0.020, r 2 =9 per cent) between the ratio of glucose to fatty acid transport and birth weight centile, largely due to the high ratio found in the lowest birth weight quartile where the babies are thinnest. This study provides no evidence that placental nutrient transport capacity limits fetal growth across a wide range of birth weights in normal pregnancies. It is proposed that the fetus itself may regulate placental nutrient transport in vivo via the fetal cardiac output and the rate of fetal nutrient utilization.
- Published
- 2002
41. A systematic review and meta-analysis of DNA methylation levels and imprinting disorders in children conceived by IVF/ICSI compared with children conceived spontaneously
- Author
-
Paul Haggarty, Miriam Kauser, Gabija Lazaraviciute, Siladitya Bhattacharya, and Sohinee Bhattacharya
- Subjects
medicine.medical_specialty ,medicine.medical_treatment ,GRB10 Adaptor Protein ,Fertilization in Vitro ,Intracytoplasmic sperm injection ,snRNP Core Proteins ,Cohort Studies ,Genomic Imprinting ,medicine ,Humans ,Epigenetics ,Sperm Injections, Intracytoplasmic ,Child ,Gynecology ,Assisted reproductive technology ,Obstetrics ,business.industry ,Obstetrics and Gynecology ,Proteins ,Odds ratio ,DNA Methylation ,Reproductive Medicine ,Potassium Channels, Voltage-Gated ,Meta-analysis ,Infertility ,DNA methylation ,RNA, Long Noncoding ,business ,Genomic imprinting ,Cohort study - Abstract
BACKGROUND Increasing numbers of children are being conceived by assisted reproductive technology (ART). A number of studies have highlighted an altered epigenetic status in gametes from infertile couples and the possibility of an increased risk of imprinting defects and somatic epigenetic changes in ART conceived children, but the results have been heterogeneous. We performed a systematic review of existing studies to compare the incidence of imprinting disorders and levels of DNA methylation in key imprinted genes in children conceived through in vitro fertilization (IVF) and intracytoplasmic sperm injection (ICSI) with those in children conceived spontaneously. METHODS A detailed search strategy was used to conduct electronic literature searches (spanning 1978 to 2013) on Medline, EMBASE, the Cochrane Library and Web of Science. Abstracts of relevant conference papers were identified. As randomized trials are not feasible in this context, we included observational (cohort and case–control) studies comparing outcomes in children conceived through ART with those conceived spontaneously, irrespective of the language of publication. The outcome measures were DNA methylation and the incidence of imprinting disorders. RESULTS A total of 351 publications were identified by the initial search. Of these, 26 were excluded as duplicates and 241 were excluded after reviewing the abstracts, then of those remaining 66 were excluded after review of the full text. A total of 18 papers were included in the review. Apart from one case–control study, all were cohort studies. There was a degree of clinical heterogeneity in terms of the study population, type of infertility treatment, and samples obtained from exposed and unexposed children. DNA methylation levels were either presented as categorical data (hypo-, hyper- or normally methylated DNA) or continuous data (i.e. percentage of methylated DNA). The combined odds ratio (95% confidence intervals) of any imprinting disorder in children conceived through ART was 3.67 (1.39, 9.74) in comparison with spontaneously conceived children. Meta-analysis of data from relevant studies revealed that the weighted mean difference (95% confidence intervals) in methylation percent between IVF/ICSI versus spontaneously conceived children were as follows: H19: −0.46(−1.41, 0.49), PEG1-MEST: 0.47 (−2.07, 3.01), GRB10: −0.05 (−0.43, 0.33), IGF2: −0.15 (−1.09, 0.79), SNRPN: −0.55 (−1.55, 0.46), KvDMR/KCNQ10T1: −0.16 (−0.34, 0.02) and PEG3: −0.24 (−1.72, 1.24). CONCLUSIONS There was an increase in imprinting disorders in children conceived though IVF and ICSI but insufficient evidence for an association between ART and methylation in other imprinted genes. Heterogeneity in the types of fertility treatment, the imprinted regions studied, the tissues used and the methods of measurement, reduce our ability to assess the full effect of ART on DNA methylation and imprinting. More controlled studies, using standardized methodologies, in larger, better clinically defined populations are needed.
- Published
- 2014
42. Polygenic Risk for Alzheimer's Disease is not Associated with Cognitive Ability or Cognitive Aging in Non-Demented Older People
- Author
-
William Ollier, G. Davies, Antony Payton, Paul Haggarty, Michael A. Horan, John M. Starr, Ian J. Deary, Lawrence J. Whalley, Sarah E. Harris, Helen C. Fox, David J. Porteous, Michelle Luciano, and Neil Pendleton
- Subjects
Male ,Gerontology ,Apolipoprotein E ,Aging ,Databases, Factual ,Locus (genetics) ,Single-nucleotide polymorphism ,Disease ,Neuropsychological Tests ,Polymorphism, Single Nucleotide ,Cohort Studies ,Apolipoproteins E ,Cognition ,Alzheimer Disease ,Humans ,Genetic Predisposition to Disease ,Cognitive decline ,Aged, 80 and over ,General Neuroscience ,General Medicine ,Psychiatry and Mental health ,Clinical Psychology ,Polygene ,Female ,Geriatrics and Gerontology ,Psychology ,Cohort study - Abstract
Alzheimer's disease (AD) and non-pathological cognitive aging have phenotypic similarities which may be influenced by an overlapping set of genetic variants. Genome-wide complex trait analysis estimates that common genetic variants account for about 24% of the variation contributing to liability for AD. It is also estimated that 24% of the variance of non-pathological cognitive aging is accounted for by common single nucleotide polymorphisms. However, although the APOE locus is associated with both AD and cognitive aging, it is not known to what extent other common genetic variants, with smaller effect sizes that influence both, overlap. We test the hypothesis that polygenic risk for AD is associated with cognitive ability and cognitive change in about 3,000 non-demented older people (Cognitive Ageing Genetics England and Scotland-CAGES-consortium). We found no significant association of polygenic risk for AD with cognitive ability or cognitive change in CAGES, indicating that the genetic etiologies of AD and non-pathological cognitive decline differ.
- Published
- 2014
43. Free and esterified fatty acid and cholesterol synthesis in adult malesand its effect on the doubly-labelled water method
- Author
-
S Kumar, J Ashton, C Earl, Thangam S, Prakash Shetty, Paul Haggarty, Eric Milne, and Anura V Kurpad
- Subjects
Adult ,Male ,Cholesterol synthesis ,medicine.medical_specialty ,Time Factors ,Medicine (miscellaneous) ,Adipose tissue ,Fatty Acids, Nonesterified ,chemistry.chemical_compound ,Biosynthesis ,Labelling ,Internal medicine ,medicine ,Humans ,Food science ,Deuterium Oxide ,chemistry.chemical_classification ,Nutrition and Dietetics ,Cholesterol ,Fatty Acids ,Fatty acid ,Lipid metabolism ,Endocrinology ,Adipose Tissue ,chemistry ,Lipogenesis ,Body Composition ,Energy Metabolism - Abstract
The purpose of the present study was to estimate whole-body fatty acid and cholesterol synthesis in weight-stable adults and to determine the likely effect on the doubly-labelled water (DLW) method for measuring energy expenditure. Synthesis was measured by2H incorporation over 14 d in six adult males in approximate energy balance following noradrenaline infusion to maximize mobilization of free fatty acid from adipose tissue. The inter-individual variation in synthesis rates was large and in one subject the proportion of free fatty acid synthesized was ten times that of the mean of the rest of the group; the fasting concentration of esterified fatty acid in this subject was five times that of the rest of the group indicating likely violation of the assumptions underlying the calculation of whole-body synthesis. After 14 d of labelling in the other five subjects, 0·9 (SEM 0·3) % OF THE CIRCULATING FREE FATTY ACID, 9·3 (sem 3·0) % of the esterified fatty acid, 14·6 (sem 2·4) % of the free cholesterol and 28·3 (sem 3·7) % of esterified cholesterol had been synthesizedde novo. A high rate of synthesis correlated with a low pre-dose2H abundance both within and between lipid classes suggesting that natural2H abundance variations in some lipid classes may be used to determine their metabolic origin. Whole-body synthetic rates were 8 g/d for fatty acid and 0·3–0·5 g/d for cholesterol. These values correspond to very small errors on DLW-derived estimates of CO2production; -2·5 litres/d for fatty acid and -0·1 to -0·2 litres/d for cholesterol. These results, obtained in subjects typically consuming a diet with a lower fat and cholesterol content that the typical Western diet, suggest that the DLW method is unlikely to be affected by fatty acid and cholesterol synthesis in subjects in energy balance consuming a typical Western diet.
- Published
- 2000
44. Reply: To pool or not to pool DNA methylation data from different tissues?
- Author
-
Miriam Kauser, Gabija Lazaraviciute, Sohinee Bhattacharya, Paul Haggarty, and Siladitya Bhattacharya
- Subjects
Genetics ,Obstetrics and Gynecology ,Fertilization in Vitro ,DNA Methylation ,Biology ,Genomic Imprinting ,chemistry.chemical_compound ,Reproductive Medicine ,chemistry ,DNA methylation ,Humans ,Sperm Injections, Intracytoplasmic ,Genomic imprinting ,DNA - Published
- 2015
45. Dietary intake and tissue concentration of fatty acids in omnivore, vegetarian and diabetic pregnancy
- Author
-
V. Lakin, David Abramovich, P.J. Danielian, Paul Haggarty, D. A. Grubb, C.F. Moffat, Geraldine McNeill, and J Ashton
- Subjects
medicine.medical_specialty ,Erythrocytes ,Placenta ,medicine.medical_treatment ,Clinical Biochemistry ,Biology ,Umbilical cord ,Umbilical Cord ,Eating ,Pregnancy ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,chemistry.chemical_classification ,Diet, Vegetarian ,Insulin ,Fatty Acids ,Fatty acid ,Cell Biology ,medicine.disease ,Diet ,Diabetes Mellitus, Type 1 ,medicine.anatomical_structure ,Endocrinology ,chemistry ,Fatty Acids, Unsaturated ,Gestation ,Female ,Energy Metabolism ,Polyunsaturated fatty acid - Abstract
The aim of this study was to determine the effect of fatty acid intake and insulin dependent diabetes on the fatty acid composition of maternal erythrocytes, the placenta and cord. Fatty acid intake (from food frequency questionnaire) and the fatty acid composition of maternal erythrocytes, the placenta and cord from pregnant vegetarians (n = 4) and insulin dependent diabetics (n = 5) was compared with pregnant omnivores (n = 10). There was a significantly lower intake of n-6 long chain polyunsaturated fatty acid (LCPUFA) (-75% P < 0.01) and n-3 LCPUFA (-92% P < 0.01) and increased ratio of n-6/n-3 LCPUFA in the vegetarians (103%; P < 0.001). The concentrations of 22:4 n-6 (+28%; P < 0.05) and 22:5 n-3 (+40%; P < 0.05) were higher in vegetarian erythrocytes. Placental 18:2 n-6 (+26.9%; P < 0.05) 18:3 n-3 (+139%; P < 0.05) and 22:5 n-3 (+24%; P < 0.05) were increased while 20:5 n-3 (-36%; P < 0.05), 22:6 n-3 (-16%; P = 0.059), and the ratios of 20:4 n-6/18:2 n-6 (P < 0.01) and 22:6 n-3/18:3 n-3 were reduced. 22:6 n-6 (-49%; P < 0.05) and total n-3 LCPUFA (-11%; P < 0.01) were reduced in vegetarian cord. For the diabetic mothers, all of the n-6 LCPUFA and n-3 LCPUFA were reduced in the maternal erythrocytes; 22:4 n-6 (-42%; P < 0.05), 22:5 n-6 (-46%; P < 0.05) and 22:6 n-3 (-41%; P < 0.05). For the diabetic placenta and cord the general pattern of n-3 LCPUFA was the same as that in the vegetarians. In the vegetarian mothers, the PUFA profiles in the maternal erythrocytes, placenta and cord are consistent with an elevation in the rate of LCPUFA synthesis in order to make up the relative deficit in LCPUFA intake. However, it may be that the higher level of desaturase activity is not able to overcome the dietary deficit of 22-6 n-3 and 22:6 n-6. Despite the fact that the dietary LCPUFA intake in the pregnant diabetic was comparable with that in the pregnant 'normal' omnivore mothers, the pattern of PUFA in the tissues resembled that of the vegetarian mothers.
- Published
- 1998
46. Long-chain polyunsaturated fatty acid transport across the perfused human placenta
- Author
-
Kenneth Robert Page, D Brown, J Ashton, Paul Haggarty, and David Abramovich
- Subjects
Adult ,Placenta ,In Vitro Techniques ,Biology ,chemistry.chemical_compound ,Pregnancy ,medicine ,Humans ,Maternal-Fetal Exchange ,Unsaturated fatty acid ,chemistry.chemical_classification ,Albumin ,Obstetrics and Gynecology ,Fatty acid ,Biological Transport ,Perfusion ,Oleic acid ,medicine.anatomical_structure ,Reproductive Medicine ,chemistry ,Biochemistry ,Docosahexaenoic acid ,embryonic structures ,Fatty Acids, Unsaturated ,Female ,Arachidonic acid ,Developmental Biology ,Polyunsaturated fatty acid - Abstract
The role of the placenta in controlling the supply of fatty acids to the fetus was investigated in term placentae (n = 9) from normal pregnancies. The maternal side was perfused ex vivo for 90 min with a modified Krebs Ringer solution containing a physiological mixture of fatty acids and ratio of fatty acid to human albumin. There was no evidence of chain elongation and desaturation of the essential fatty acids. Relative to the value for oleic acid, the rate of transfer to the fetal circulation was: 1.30 +/- 0.02 (P0.001) for linoleic acid, 1.61 +/- 0.09 (P = 0.002) for alpha-linolenic acid, 0.67 +/- 0.10 (P = 0.033) for arachidonic acid and 2.10 +/- 0.16 (P = 0.003) for docosahexaenoic acid. For tissue accumulation the values were 1.47 +/- 0.39 (P0.001) for linoleic acid, 2.24 +/- 0.37 (P = 0.027) for alpha-linolenic acid, 9.84 +/- 1.03 (P = 0.001) for arachidonic acid, and 3.01 +/- 0.79 (P = 0.064) for docosahexaenoic acid. The order of selectivity for transfer from the maternal to the fetal circulation was docosahexaenoicalpha-linoleniclinoleicoleicarachidonic acid. Such a mechanism would allow the preferential transfer of docosahexaenoic acid and the essential fatty acids to the fetal circulation, thereby protecting the polyunsaturated fatty acid supply to the fetus during a critical period of development.
- Published
- 1997
47. Free-living energy expenditure of adult men assessed by continuous heart-rate monitoring and doubly-labelled water
- Author
-
John S. Smith, Geraldine McNeill, Linda Davidson, Paul Haggarty, and M. F. Franklin
- Subjects
Adult ,Male ,Nutrition and Dietetics ,Physical activity ,Energetic cost ,Monitoring, Ambulatory ,Water ,Medicine (miscellaneous) ,Calorimetry, Indirect ,Middle Aged ,Oxygen Isotopes ,Deuterium ,Sensitivity and Specificity ,Animal science ,Energy expenditure ,Heart Rate ,Heart rate monitoring ,Heart rate ,Humans ,Regression Analysis ,Energy Metabolism ,Exercise ,Mathematics - Abstract
Free-living energy expenditure was estimated by doubly-labelled water (DLW) and continuous heart-rate (HR) monitoring over nine consecutive days in nine healthy men with sedentary occupations but different levels of leisure-time physical activity. Individual calibrations of the HR-energy expenditure (EE) relationship were obtained for each subject using 30 min average values of HR and EE obtained during 24h whole-body calorimetry with a defined exercise protocol, and additional data points for individual leisure activities measured with an Oxylog portable O2 consumption meter. The HR data were processed to remove spurious values and insert missing data before the calculation of EE from second-order polynomial equations relating EE to HR. After data processing, the HR-derived EE for this group of subjects was on average 0.8 (sem 0.6) MJ/d, or 6.0 (sem 4.2)% higher than that estimated by DLW. The diary-respirometer method, used over the same 9d, gave values which were 1.9 (sem 0.7) MJ/d, or -12.1 (sem 4.0)% lower than the DLW method. The results suggest that HR monitoring can provide a better estimate of 24 h EE of groups than the diary-respirometer method, but show that both methods can introduce errors of 20% or more in individuals.
- Published
- 1997
48. Energy expenditure during heavy work and its interaction with body weight
- Author
-
W. P. T. James, A Pinelli, Maria del Socorro Saucedo, N L Gonzales, Paul Haggarty, Julian Esparza, Geraldine McNeill, Luis Quihui, Mauro E. Valencia, J Ashton, Eric Milne, and S Y Moya
- Subjects
Gerontology ,Food intake ,Work activity ,Nutrition and Dietetics ,Energy expenditure ,Total energy expenditure ,Time allocation ,Statistics ,Work (physics) ,Medicine (miscellaneous) ,Body weight ,Energy requirement ,Mathematics - Abstract
The present study was designed to investigate the interaction between body weight and energy expenditure in well-nourished individuals. Energy expenditure was determined during a 10 d highly controlled work programme in apparently well-nourished adult male construction workers with a wide range of body weights (mean weight: 63·9 (SD 11·0, range 46·7-80·1) kg, mean BMI: 22·5 (SD 3·8, range 16·7-28·9) kg/m2). Total energy expenditure (mean: 12·68 (SE 0·73) MJ/d or 1·78 (SE 0·07) x BMR) was determined using doubly-labelled water and the energy costs of work activities by Oxylog. The energy expenditure during work (mean: 5·75 (SE 0·29) MJ/day or 3·48 (SE 0·09) x BMR) was estimated from the energy costs of individual tasks and the time spent in those tasks. The energy expenditure during discretionary time (mean: 4·37 (SE 0·58) MJ/d or 1·49 (SE 0·17) x BMR) was calculated by subtracting occupation and sleep expenditure (taken as1 x BMR) from total expenditure. Food intake and discretionary time allocation were recorded by the subjects. The energy expenditure in the programmed work activities (expressed as a multiple of BMR) showed a significant increase (P=0·035) with increasing body weight, suggesting that the assumed constancy of BMR multiples across a wide range of body weights may not be valid. This assertion was supported by theoretical calculations based on empirically derived equations. In order to avoid errors which could be interpreted as metabolic ‘adaptation’ it may be necessary to take account of body weight when using the BMR-multiple approach to estimate energy requirements at low body weights.
- Published
- 1997
49. Epigenetic consequences of a changing human diet
- Author
-
Paul Haggarty
- Subjects
Nutrition and Dietetics ,business.industry ,Mechanism (biology) ,Medicine (miscellaneous) ,Nutritional Status ,Feeding Behavior ,Biology ,DNA Methylation ,Biotechnology ,Diet ,Epigenesis, Genetic ,Evolution, Molecular ,Epigenetic programming ,Dietary monitoring ,Environmental health ,Humans ,Epigenetics ,Food components ,Dietary change ,business - Abstract
The human diet has undergone profound changes over recent generations and this trend is likely to accelerate in the 21st century. Innovations in food technology, new ways of producing and processing foods and the increasing use of artificial vitamins and novel ingredients are changing the human diet in ways that our dietary monitoring systems struggle to keep pace with. There is a growing awareness of the importance of diet, but little understanding of how these changes may affect the health of current and future generations. Epigenetic programming, and specifically the persistence of functional epigenetic states following nutritional exposure, is particularly relevant to the issue of dietary change. Epigenetics is emerging as perhaps the most important mechanism through which diet and nutrition can directly influence the genome and there is now considerable evidence for nutritional epigenetic programming of health and the response to diet itself. A number of nutrients and food components that are changing in the human diet have been shown to produce epigenetic states that are stable across different timescales. We need to better understand the nutritional programming of epigenetic states, the persistence of these marks in time and their effect on biological function and the response to diet.
- Published
- 2013
50. Pregnancy: Placental regulation of nutrient delivery to the fetus
- Author
-
Paul Haggarty
- Subjects
medicine.medical_specialty ,Fetus ,Pregnancy ,Physiology ,Nutrient intake ,Biology ,medicine.disease ,Nutrient ,Fetal circulation ,Endocrinology ,medicine.anatomical_structure ,Internal medicine ,Placenta ,embryonic structures ,Fetal growth ,medicine ,Nutrient transporters - Abstract
The main nutritional role of the placenta is to provide the correct mix of nutrients in sufficient quantities to support fetal growth and development throughout pregnancy while coping with wide variations in maternal nutrient intake between pregnancies and temporal variations within a pregnancy. The placenta represents a nutritional ‘bottleneck’ where competition for nutrient transporters and metabolic selectivity, acting in concert with maternal adaptations, allows the placenta to regulate the nutrient mix within the fetal circulation. The fetus itself also plays an active role in regulating key aspects of placental transport in order to meet its own nutrient requirements.
- Published
- 2013
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