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Three species of skate, Bathyraja eatonii , B. irrasa and B. murrayi, are commonly taken as incidental by-catch in Patagonian toothfish ( Dissostichus eleginoides ) longline and trawl fisheries, and the mackerel icefish ( Champsocephalus gunnari ) trawl fishery on the Kerguelen Plateau (KP) in the southern Indian Ocean. Data from fishery observations for 1997–2014 shows that the three skates were widely distributed across the Kerguelen Plateau, showing different spatial distributions, linked mainly with depth. Off Heard Island and McDonald Islands (HIMI), in the southern part of the KP, B. eatonii and B. irrasa were most abundant to the north and northwest of Heard Island, out to the edge of the Australian Exclusive Economic Zone (EEZ), and were caught down to depths of 1790 m and 2059 m respectively. The smallest species, B. murrayi , occurred mainly in the shallower waters down to 550 m, and was most abundant to the north and northeast, close to Heard Island. Around Kerguelen Islands, in the northern part of the KP, skates were most abundant between the 500 m and 1000 m contours circling and extending from the islands. Catch rates were modelled using zero-inflated GAMs and GLMs. The catch rates of skates from the trawl fisheries in the Australian EEZ surrounding Heard Island and McDonald Islands have shown little evidence of depletion on the main trawl fishing grounds, although there is evidence of a decrease in the average total length of B. eatonii . The marine reserves and the conservation measures employed by the Commission for the Conservation of Antarctic Marine Living Resources in the HIMI fisheries, appear to provide effective protection for the skates, at least in the shallower waters where the trawl fisheries operate. B. irrasa taken in the deeper waters where longline fishing occurs have shown a slight decline in catch rate over the years of the HIMI fishery. Although all skates are returned to the water from this fishery, survival rates are unknown and careful monitoring should continue to assess the status of these stocks. There appears to be little change in the abundance of the skate species at Kerguelen in the time period. This study provides the first review of skate by-catch across both the HIMI and Kerguelen fisheries. Ongoing monitoring of species specific by-catch levels and further research to determine the important life history parameters of these species are required, particularly for B. irrasa which is taken in both trawl and longline fisheries.

The RSV Aurora Australis survey allowed the first comprehensive study of the demersal ichthyofaunal environment and of the diversity of the Dumont d’Urville Sea. We observed a high dominance of the Notothenioidei in both the number of species and in integrated abundances. The Nototheniidae was the most abundant family with 44.7% of the total integrated abundance, followed by Bathydraconidae (18.8%). Trematomus eulepidotus was the dominant species with 19.9% of the total individuals catch. Nevertheless, 43 of the 53 species caught could be considered as very rare. The Bathydraconidae was the most diversified family with 11 species caught. The highest integrated abundances of fish were found from 400 to 800 m. Well-structured species communities were observed, with high species richness from 570 to 681 m. The richest zones were located along the basins and along their upper-sides. Statistical analyses indicated large-scale spatial patterns in species composition, with clear differences in fish communities from the continental slopes, the basins and on the shelf. At a finer spatial scale, the current in the George V Basin and iceberg scouring on the banks and their sides tended to create locally heterogeneous small-scale habitats. We suggest that the glacial history and the structured habitats allowed successive colonisations of the seabed by demersal fish.

Specimens stored in museum collections represent a crucial source of morphological and genetic information, notably for taxonomically problematic groups and extinct taxa. Although fluid-preserved specimens of groups such as teleosts may constitute an almost infinite source of DNA, few ancient DNA protocols have been applied to such material. In this study, we describe a non-invasive Guanidine-based (GuSCN) ancient DNA extraction protocol adapted to fluid-preserved specimens that we use to re-assess the systematics of the genus Orestias (Cyprinodontidae: Teleostei). The latter regroups pupfishes endemic to the inter-Andean basin that have been considered as a 'species flock', and for which the morphology-based taxonomic delimitations have been hotly debated. We extracted DNA from the type specimens of Orestias kept at the Muséum National d'Histoire Naturelle of Paris, France, including the extinct species O. cuvieri. We then built the first molecular (control region [CR] and rhodopsin [RH]) phylogeny including historical and recently collected representatives of all the Orestias complexes as recognized by Parenti (1984a): agassizii, cuvieri, gilsoni and mulleri. Our ancient DNA extraction protocol was validated after PCR amplification through an approach based on fragment-by-fragment chimera detection. After optimization, we were able to amplify200 bp fragments from both mitochondrial and nuclear DNA (CR and RH, respectively) from probably formalin-fixed type specimens bathed entirely in the extraction fluid. Most of the individuals exhibited few modifications of their external structures after GuSCN bath. Our approach combining type material and 'fresh' specimens allowed us to taxonomically delineate four clades recovered from the well-resolved CR tree into four redefined complexes: agassizii (sensu stricto, i.e. excluding luteus-like species), luteus, cuvieri and gilsoni. The mulleri complex is polyphyletic. Our phylogenetic analyses based on both mitochondrial and nuclear DNA revealed a main, deep dichotomy within the genus Orestias, separating the agassizii complex from a clade grouped under shallow dichotomies as (luteus, (cuvieri, gilsoni)). This 'deep and shallow' diversification pattern could fit within a scenario of ancient divergence between the agassizii complex and the rest of Orestias, followed by a recent diversification or adaptive radiation within each complex during the Pleistocene, in- and outside the Lake Titicaca. We could not recover the reciprocal monophyly of any of the 15 species or morphotypes that were considered in our analyses, possibly due to incomplete lineage sorting and/or hybridization events. As a consequence, our results starkly question the delineation of a series of diagnostic characters listed in the literature for Orestias. Although not included in our phylogenetic analysis, the syntype of O. jussiei could not be assigned to the agassizii complex as newly defined. The CR sequence of the extinct O. cuvieri was recovered within the cuvieri clade (same haplotype as one representative of O. pentlandii), so the mtDNA of the former species might still be represented in the wild.

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Pelagic fish assemblages and community structure were examined along longitudinal and meridian transects off Adelie and George V Land, East Antarctica, in the austral summer 2008. Fish were sampled with an RMT 8 net principally from six discrete depth layers (0–50–100–200–500–1000–2000 m) in the oceanic zone and from three depth layers (0–50–100–200 m) over the continental shelf zone. A total of 20,281 individuals from 27 species were collected. Pleuragramma antarcticum was the most dominant species by number (18,710 inds), followed by Chionodraco hamatus (768), Trematomus newnesi (375), Cyclothone microdon (101), Electrona antarctica (92), Bathylagus antarcticus (51) and Notolepis coatsi (54). Cluster analysis revealed that the fish community was clearly divided at the Antarctic Slope Front into separate oceanic and shelf assemblages, being dominated by mesopelagic fish and notothenioids, respectively. The Southern Boundary of Antarctic Circumpolar Current likely restricted a more northern distribution of notothenioids in the upper 200 m. Mesopelagic fish dominated the large biomass below 500 m and notothenioids dominated that in the upper 100 m. It is considered that mesopelagic fish in the oceanic zone would unlikely be eaten by seabirds because no distinctive diel vertical migration to the surface layer was observed. In the neritic zone, notothenioids (C. hamatus, T. newnesi and P. antarcticum) possibly play an important role as prey items for flying seabirds, penguins and other notothenioids fish especially in the shallow depth stratum (0–100 m).

The pelagic fish community of the Dumont d'Urville Sea (East Antarctica) was investigated during the 2008 austral-summer using IYGPT (International Young Gadoid Pelagic Trawl) samples taken in different depth layers from the surface to 1000 m. The aim of this paper is to describe the mesopelagic fish community and its size distribution. The family Myctophidae dominated the mesopelagic ichthyofauna, while bathylagids were abundant in deeper hauls. Bathylagids, Cyclothone spp., Gymnoscopelus opisthopterus, Electrona antarctica, Protomyctophum bolini, and Krefftichthys anderssoni were the most abundant taxa in the samples and showed size stratification with depth. Community and size structuring appear to be influenced by the hydrology and by the proximity of the continental margin, as well as a relationship to the circulation of the Modified Circumpolar Deep Water. (C) 2011 Elsevier B.V. and NIPR. All rights reserved.

In the winter 2007–2008, the CAML-CEAMARC cruises prospected in the Eastern part of the Antarctic continental shelf (Dumont d'Urville Sea, off Terre Adelie). The Australian R/V “Aurora Australis” and the Japanese R/V “Umitaka Maru” sampled in locations and at depths previously uninvestigated in this region. In total, 538 teleost specimens collected during these cruises were sequenced for the mitochondrial cytochrome oxidase I gene (COI), with the goal of barcoding a representative sampling from the campaign. The efficiency of barcoding for identification has been questioned for some taxonomic groups, thus we compared the COI results for a few of the families and genera included here (genus Trematomus , Artedidraconidae, Liparidae) to results for other markers for the same specimens. To better explore intra- and interspecific variability, sequences from previous campaigns and public databases were added to the analysis for these groups. The congruence among the results for different genes (COI, cytochrome b, D-loop and the nuclear rhodopsin retrogene) and morphological identification was used to assess the efficiency of the COI dataset at recovering species delimited using other data. Where discrepancies were present among the different data sources, a morphological re-identification was performed. The partial COI sequence yields reliable identification in most Antarctic teleost families when using their position in the clusters on a NJ tree. However, for several groups of species neither COI nor the other molecular markers investigated nor morphology recover unambiguously the currently accepted species. The taxonomy of these groups needs to be reconsidered. Identification through sequence similarity using the Barcode of Life Data System (BOLD) works for some groups, but is hampered by the incompleteness of the taxonomic coverage for antarctic teleosts. For four families (Artedidraconidae, Zoarcidae, Liparidae and Channichthyidae), several interspecific divergences were very small, and of the same magnitude as intraspecific divergences for other antarctic species. Despite these small divergences, almost all the species investigated in artedidraconids have molecular synapomorphies in the COI sequences, and a barcoding gap from the closest species. In the genus Trematomus , almost all species are well separated except for two pairs of closely related species that could not be distinguished by the other molecular markers either. For the typically hard to identify zoarcids and liparids, the results of barcoding are in agreement with in-depth morphological study. Once a reasonably complete reference dataset is available, barcoding will be invaluable to discriminate species from one another in these families. A careful comparison of the morphological and molecular results for our specimens allowed us to add numerous well-identified specimens (including some rare species) and sequences to BOLD. It helped to pinpoint the specimens that needed to be re-identified morphologically, and highlighted groups where barcoding is most helpful for specimen identification ( Chionodraco species). This large-scale project underlines the need for further taxonomic work in antarctic actinopterygians.

International audience; Ecoregions are defined in terms of community structure as a function of abiotic or even anthropogenic forcing. They are meso-scale structures defined as the potential habitat of a species or the predicted communities geographic extent. We assume that they can be more easily defined for long-lived species, such as benthos or neritic fish, in the marine environment. Uncertainties exist for the pelagic realm because of its higher variability, plus little is known about the meso-and bathypelagic zones. A changing environment and modification of habitats will probably drive new communities from plankton to fish or top predators. We need baseline studies, such as those of the Census of Antarctic Marine Life, and databases like SCAR-MarBIN as tools for integrating all of these observations. Our objective is to understand the biodiversity patterns in the Southern Ocean and how these might change through time. (C) 2010 Elsevier B.V. and NIPR. All rights reserved.

International audience; Incidental seabird mortality associated with longline commercial fishing is a worldwide conservation concern. To develop conservation strategies, it is essential to estimate the likelihood of seabird bycatch and the degree of overlap between birds' foraging grounds and commercial fishing areas. We tracked 21 adult white-chinned petrels Procellaria aequinoctialis breeding on Kerguelen Island, southern Indian Ocean, during their breeding period in 2006 and in 2008. At-sea foraging distribution of white-chinned petrels was mainly confined to Antarctic waters. Commercial longline fisheries targeting toothfish were operating in both the French Exclusive Economic Zone and in other Commission for the Conservation of Antarctic Marine Living Resources areas during the study. We analysed concurrent data on the positions of both birds and vessels to estimate overlap. Static analysis using indices (home-range and utilization distribution overlap) revealed that, at a large scale, spatial and temporal overlap occurred, but varied among areas and with breeding stage. Dynamic analysis (detection of operating vessels respective to bird locations within a time/space window) revealed little overlap at a small scale. Our study revealed a mismatch between large- and small-scale overlap estimates, suggesting that birds and vessels occupy the same overall zone with infrequent co-occurrence (19% of birds in the vicinity of vessels). This result was confirmed by the relatively low occurrence of fishery-related items (4 to 22%) in chick food samples. However, given the large size of seabird populations, overall, large numbers of birds overlap with vessels, and management authorities should maintain and promote the implementation of strict mitigation measures to further reduce bycatch.

Since the article published by Loeb et al. [Loeb, V.J., Kellermann, A., Koubbi, P., North, A.W., White, M., 1993. Antarctic larval fish assemblages: a review. Bull. Mar. Sci. 53(2), 416–449.] about Antarctic ichthyoplankton, many surveys were carried out in different sectors of the Southern Ocean focusing on different aspects of the ecology of fish larvae. Some of these researches were conducted in the Subantarctic Kerguelen Islands and others on the continental shelf off Terre Adelie and Georges V land. Oceanographic and geographic features influence fish larvae ecology such as island mass effects, gyres, canyons. Antarctic fishes show also temporal segregation of spawning which induces temporal succession of early stage larvae. This avoids competition and probably the predation on early stages for species having few recruits. In that case, we have to understand how these larvae can deal with the match–mismatch with their preys and how they find sufficient food to survive. But our knowledge on Antarctic fish larvae is still insufficient as we do not know larvae for quite a lot of species and because of the difficulty to sample during winter.

18 pages; International audience; The large temporal and spatial variability in marine productivity encountered by marine predators may negatively influence breeding success. The Antarctic fur seal Arctocephalus gazella (AFS), a marine predator in the Southern Ocean (SO) ecosystem with a circumpolar distribution, exhibits a short, 4 mo lactation coinciding with increased summer marine productivity. The diet of AFS, and the distance to significant and productive oceanographic features, such as the Antarctic Polar Frontal Zone (PFZ), varies considerably between populations. We studied the foraging activity, foraging efficiency and the pup provisioning strategies of lactating AFS at a key breeding site in the southern Indian Ocean, the Kerguelen Archipelago. Foraging parameters were examined in relation to interannual variability in oceanographic conditions and prey availability in the PFZ over 3 consecutive breeding seasons (1998 to 2000). The location of foraging zones, diving activity, diet and foraging efficiency varied significantly between years, concurrently with annual changes in seasurface temperature (SST) and prey availability. The strongest recorded El Niño Southern Oscillation event in 1997–1998 coincided with anomalously warm waters in the vicinity of the Archipelago. Deeper diving by females, reduced maternal and pup body condition, and minimal pup growth rates and low catch per unit effort of the primary prey species, lanternfishes (Myctophidae) were all recorded in this period. Maternal size was positively related to the growth performance of pups only in this period, indicating the importance of age/size and/or experience in mediating environmental fluctuations. Foraging efficiency over a foraging cycle and variability in mean provisioning rates (trip duration), were identified as proxies of prey availability within the foraging range of seals, emphasising the effectiveness of the use of AFS foraging behaviour as an indicator of both food and oceanographic variability and climatic anomalies. The increasing frequency of anomalously warm SST events in sectors of the SO, however, may elicit specific behavioural responses from ‘central place foragers' (i.e. species that return to breeding sites to feed their young) to avoid sustained poor body condition of females and their weaned offspring.