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Password-based security is prone to forgetting, guessing, and hacking. Similarly, standalone biometric-based security is susceptible to template spoofing and replay attacks. This paper proposes a biocryptosystem based on face recognition technique to bridge this gap such that it can encrypt and decrypt any kind of file using the Advanced Encryption Standard (AES). The biocryptosystem uses a combination of biometric identification and cryptographic methods to protect sensitive information in a secure and effective manner. To verify a user's identity, our proposed system first captures an image of their face and extracts facial traits. The Histogram of Oriented Gradients (HOG) detects all the unique facial traits because HOG effectively captures edge-based features even in dim lighting. Every data type, including text, audio, and video files, can be encrypted and decrypted using this system. Biometric evidence is inherently tied to an individual, so it is almost impossible for attackers to access the user's data. This method also offers a high level of security by employing biometric data as an element in the 2-factor authentication process. The precision, efficiency, and security of this biocryptosystem are experimentally proven by different metrics like entropy and avalanche effect. Applications for the proposed system include safe file sharing, online transactions, and data archiving. Hence, it offers a strong and dependable option for safeguarding sensitive data., Comment: 12 pages, 2 figures, submitted to "Journal of Cryptology"

Clinically deployed deep learning-based segmentation models are known to fail on data outside of their training distributions. While clinicians review the segmentations, these models tend to perform well in most instances, which could exacerbate automation bias. Therefore, detecting out-of-distribution images at inference is critical to warn the clinicians that the model likely failed. This work applied the Mahalanobis distance (MD) post hoc to the bottleneck features of four Swin UNETR and nnU-net models that segmented the liver on T1-weighted magnetic resonance imaging and computed tomography. By reducing the dimensions of the bottleneck features with either principal component analysis or uniform manifold approximation and projection, images the models failed on were detected with high performance and minimal computational load. In addition, this work explored a non-parametric alternative to the MD, a k-th nearest neighbors distance (KNN). KNN drastically improved scalability and performance over MD when both were applied to raw and average-pooled bottleneck features., Comment: Accepted for publication at the Journal of Machine Learning for Biomedical Imaging (MELBA) https://melba-journal.org/2024:020. Expansion of "Dimensionality Reduction for Improving Out-of-Distribution Detection in Medical Image Segmentation" arXiv:2308.03723. Code available at https://github.com/mckellwoodland/dimen_reduce_mahal (https://zenodo.org/records/13881989)

In this paper, we report the excitation of coherent density and potential fluctuations induced by magnetohydrodynamic (MHD) activity in the edge plasma region of ADITYA-U Tokamak. When the amplitude of the MHD mode, mainly the m/n = 2/1, increases beyond a threshold value of 0.3-0.4 %, coherent oscillations in the density and potential fluctuations are observed having the same frequency as that of the MHD mode. The mode numbers of these MHD induced density and potential fluctuations are obtained by Langmuir probes placed at different radial, poloidal, and toroidal locations in the edge plasma region. Detailed analyses of these Langmuir probe measurements reveal that the coherent mode in edge potential fluctuation has a mode structure of m/n = 2/1 whereas the edge density fluctuation has an m/n = 1/1 structure. It is further observed that beyond the threshold, the coupled power fraction scales almost linearly with the magnitude of magnetic fluctuations. Furthermore, the rise rates of the coupled power fraction for coherent modes in density and potential fluctuations are also found to be dependent on the growth rate of magnetic fluctuations. The disparate mode structures of the excited modes in density and plasma potential fluctuations suggest that the underlying mechanism for their existence is most likely due to the excitation of the global high-frequency branch of zonal flows occurring through the coupling of even harmonics of potential to the odd harmonics of pressure due to 1/R dependence of the toroidal magnetic field.

Semi-structured interviews (SSIs) are a commonly employed data-collection method in healthcare research, offering in-depth qualitative insights into subject experiences. Despite their value, the manual analysis of SSIs is notoriously time-consuming and labor-intensive, in part due to the difficulty of extracting and categorizing emotional responses, and challenges in scaling human evaluation for large populations. In this study, we develop RACER, a Large Language Model (LLM) based expert-guided automated pipeline that efficiently converts raw interview transcripts into insightful domain-relevant themes and sub-themes. We used RACER to analyze SSIs conducted with 93 healthcare professionals and trainees to assess the broad personal and professional mental health impacts of the COVID-19 crisis. RACER achieves moderately high agreement with two human evaluators (72%), which approaches the human inter-rater agreement (77%). Interestingly, LLMs and humans struggle with similar content involving nuanced emotional, ambivalent/dialectical, and psychological statements. Our study highlights the opportunities and challenges in using LLMs to improve research efficiency and opens new avenues for scalable analysis of SSIs in healthcare research.

Fr\'echet Inception Distance (FID) is a widely used metric for assessing synthetic image quality. It relies on an ImageNet-based feature extractor, making its applicability to medical imaging unclear. A recent trend is to adapt FID to medical imaging through feature extractors trained on medical images. Our study challenges this practice by demonstrating that ImageNet-based extractors are more consistent and aligned with human judgment than their RadImageNet counterparts. We evaluated sixteen StyleGAN2 networks across four medical imaging modalities and four data augmentation techniques with Fr\'echet distances (FDs) computed using eleven ImageNet or RadImageNet-trained feature extractors. Comparison with human judgment via visual Turing tests revealed that ImageNet-based extractors produced rankings consistent with human judgment, with the FD derived from the ImageNet-trained SwAV extractor significantly correlating with expert evaluations. In contrast, RadImageNet-based rankings were volatile and inconsistent with human judgment. Our findings challenge prevailing assumptions, providing novel evidence that medical image-trained feature extractors do not inherently improve FDs and can even compromise their reliability. Our code is available at https://github.com/mckellwoodland/fid-med-eval., Comment: This preprint has not undergone peer review or any post-submission improvements or corrections. The Version of Record of this contribution is published in LNCS vol. 15012, and is available online at https://doi.org/10.1007/978-3-031-72390-2_9

The most popular and universally predictive protein simulation models employ all-atom molecular dynamics (MD), but they come at extreme computational cost. The development of a universal, computationally efficient coarse-grained (CG) model with similar prediction performance has been a long-standing challenge. By combining recent deep learning methods with a large and diverse training set of all-atom protein simulations, we here develop a bottom-up CG force field with chemical transferability, which can be used for extrapolative molecular dynamics on new sequences not used during model parametrization. We demonstrate that the model successfully predicts folded structures, intermediates, metastable folded and unfolded basins, and the fluctuations of intrinsically disordered proteins while it is several orders of magnitude faster than an all-atom model. This showcases the feasibility of a universal and computationally efficient machine-learned CG model for proteins.

Clinically deployed segmentation models are known to fail on data outside of their training distribution. As these models perform well on most cases, it is imperative to detect out-of-distribution (OOD) images at inference to protect against automation bias. This work applies the Mahalanobis distance post hoc to the bottleneck features of a Swin UNETR model that segments the liver on T1-weighted magnetic resonance imaging. By reducing the dimensions of the bottleneck features with principal component analysis, OOD images were detected with high performance and minimal computational load., Comment: This preprint has not undergone peer review or any post-submission improvements or corrections. The Version of Record of this contribution is published in the proceedings of UNSURE 2023, Lecture Notes in Computer Science, vol 14291, and is available online at https://doi.org/10.1007/978-3-031-44336-7_15

A key property of neural networks (both biological and artificial) is how they learn to represent and manipulate input information in order to solve a task. Different types of representations may be suited to different types of tasks, making identifying and understanding learned representations a critical part of understanding and designing useful networks. In this paper, we introduce a new pseudo-kernel based tool for analyzing and predicting learned representations, based only on the initial conditions of the network and the training curriculum. We validate the method on a simple test case, before demonstrating its use on a question about the effects of representational learning on sequential single versus concurrent multitask performance. We show that our method can be used to predict the effects of the scale of weight initialization and training curriculum on representational learning and downstream concurrent multitasking performance., Comment: 30 pages, 16 figures

One barrier to the clinical deployment of deep learning-based models is the presence of images at runtime that lie far outside the training distribution of a given model. We aim to detect these out-of-distribution (OOD) images with a generative adversarial network (GAN). Our training dataset was comprised of 3,234 liver-containing computed tomography (CT) scans from 456 patients. Our OOD test data consisted of CT images of the brain, head and neck, lung, cervix, and abnormal livers. A StyleGAN2-ADA architecture was employed to model the training distribution. Images were reconstructed using backpropagation. Reconstructions were evaluated using the Wasserstein distance, mean squared error, and the structural similarity index measure. OOD detection was evaluated with the area under the receiver operating characteristic curve (AUROC). Our paradigm distinguished between liver and non-liver CT with greater than 90% AUROC. It was also completely unable to reconstruct liver artifacts, such as needles and ascites., Comment: Extended abstract published in the "Medical Imaging Meets NeurIPS" workshop at NeurIPS 2022. Original abstract can be found at http://www.cse.cuhk.edu.hk/~qdou/public/medneurips2022/125.pdf

Training dataset biases are by far the most scrutinized factors when explaining algorithmic biases of neural networks. In contrast, hyperparameters related to the neural network architecture have largely been ignored even though different network parameterizations are known to induce different implicit biases over learned features. For example, convolutional kernel size is known to affect the frequency content of features learned in CNNs. In this work, we present a causal framework for linking an architectural hyperparameter to out-of-distribution algorithmic bias. Our framework is experimental, in that we train several versions of a network with an intervention to a specific hyperparameter, and measure the resulting causal effect of this choice on performance bias when a particular out-of-distribution image perturbation is applied. In our experiments, we focused on measuring the causal relationship between convolutional kernel size and face analysis classification bias across different subpopulations (race/gender), with respect to high-frequency image details. We show that modifying kernel size, even in one layer of a CNN, changes the frequency content of learned features significantly across data subgroups leading to biased generalization performance even in the presence of a balanced dataset., Comment: WACV 2024

Although generative adversarial networks (GANs) have shown promise in medical imaging, they have four main limitations that impeded their utility: computational cost, data requirements, reliable evaluation measures, and training complexity. Our work investigates each of these obstacles in a novel application of StyleGAN2-ADA to high-resolution medical imaging datasets. Our dataset is comprised of liver-containing axial slices from non-contrast and contrast-enhanced computed tomography (CT) scans. Additionally, we utilized four public datasets composed of various imaging modalities. We trained a StyleGAN2 network with transfer learning (from the Flickr-Faces-HQ dataset) and data augmentation (horizontal flipping and adaptive discriminator augmentation). The network's generative quality was measured quantitatively with the Fr\'echet Inception Distance (FID) and qualitatively with a visual Turing test given to seven radiologists and radiation oncologists. The StyleGAN2-ADA network achieved a FID of 5.22 ($\pm$ 0.17) on our liver CT dataset. It also set new record FIDs of 10.78, 3.52, 21.17, and 5.39 on the publicly available SLIVER07, ChestX-ray14, ACDC, and Medical Segmentation Decathlon (brain tumors) datasets. In the visual Turing test, the clinicians rated generated images as real 42% of the time, approaching random guessing. Our computational ablation study revealed that transfer learning and data augmentation stabilize training and improve the perceptual quality of the generated images. We observed the FID to be consistent with human perceptual evaluation of medical images. Finally, our work found that StyleGAN2-ADA consistently produces high-quality results without hyperparameter searches or retraining., Comment: This preprint has not undergone post-submission improvements or corrections. The Version of Record of this contribution is published in LNCS, volume 13570, and is available online at https://doi.org/10.1007/978-3-031-16980-9_14

Convolutional neural networks (CNNs) have been employed along with Variational Monte Carlo methods for finding the ground state of quantum many-body spin systems with great success. In order to do so, however, a CNN with only linearly many variational parameters has to circumvent the ``curse of dimensionality'' and successfully approximate a wavefunction on an exponentially large Hilbert space. In our work, we provide a theoretical and experimental analysis of how the CNN optimizes learning for spin systems, and investigate the CNN's low dimensional approximation. We first quantify the role played by physical symmetries of the underlying spin system during training. We incorporate our insights into a new training algorithm and demonstrate its improved efficiency, accuracy and robustness. We then further investigate the CNN's ability to approximate wavefunctions by looking at the entanglement spectrum captured by the size of the convolutional filter. Our insights reveal the CNN to be an ansatz fundamentally centered around the occurrence statistics of $K$-motifs of the input strings. We use this motivation to provide the shallow CNN ansatz with a unifying theoretical interpretation in terms of other well-known statistical and physical ansatzes such as the maximum entropy (MaxEnt) and entangled plaquette correlator product states (EP-CPS). Using regression analysis, we find further relationships between the CNN's approximations of the different motifs' expectation values. Our results allow us to gain a comprehensive, improved understanding of how CNNs successfully approximate quantum spin Hamiltonians and to use that understanding to improve CNN performance., Comment: 27 pages, 6 figures. Yilong Ju and Shah Saad Alam contributed equally to this work

Psychomotor retardation in depression has been associated with speech timing changes from dyadic clinical interviews. In this work, we investigate speech timing features from free-living dyadic interactions. Apart from the possibility of continuous monitoring to complement clinical visits, a study in free-living conditions would also allow inferring sociability features such as dyadic interaction frequency implicated in depression. We adapted a speaker count estimator as a dyadic interaction detector with a specificity of 89.5% and a sensitivity of 86.1% in the DIHARD dataset. Using the detector, we obtained speech timing features from the detected dyadic interactions in multi-day audio recordings of 32 participants comprised of 13 healthy individuals, 11 individuals with depression, and 8 individuals with psychotic disorders. The dyadic interaction frequency increased with depression severity in participants with no or mild depression, indicating a potential diagnostic marker of depression onset. However, the dyadic interaction frequency decreased with increasing depression severity for participants with moderate or severe depression. In terms of speech timing features, the response time had a significant positive correlation with depression severity. Our work shows the potential of dyadic interaction analysis from audio recordings of free-living to obtain markers of depression severity., Comment: Accepted to INTERSPEECH 2022

Human pose estimation from monocular video is a rapidly advancing field that offers great promise to human movement science and rehabilitation. This potential is tempered by the smaller body of work ensuring the outputs are clinically meaningful and properly calibrated. Gait analysis, typically performed in a dedicated lab, produces precise measurements including kinematics and step timing. Using over 7000 monocular video from an instrumented gait analysis lab, we trained a neural network to map 3D joint trajectories and the height of individuals onto interpretable biomechanical outputs including gait cycle timing and sagittal plane joint kinematics and spatiotemporal trajectories. This task specific layer produces accurate estimates of the timing of foot contact and foot off events. After parsing the kinematic outputs into individual gait cycles, it also enables accurate cycle-by-cycle estimates of cadence, step time, double and single support time, walking speed and step length.

Despite the enormous success of artificial neural networks (ANNs) in many disciplines, the characterization of their computations and the origin of key properties such as generalization and robustness remain open questions. Recent literature suggests that robust networks with good generalization properties tend to be biased towards processing low frequencies in images. To explore the frequency bias hypothesis further, we develop an algorithm that allows us to learn modulatory masks highlighting the essential input frequencies needed for preserving a trained network's performance. We achieve this by imposing invariance in the loss with respect to such modulations in the input frequencies. We first use our method to test the low-frequency preference hypothesis of adversarially trained or data-augmented networks. Our results suggest that adversarially robust networks indeed exhibit a low-frequency bias but we find this bias is also dependent on directions in frequency space. However, this is not necessarily true for other types of data augmentation. Our results also indicate that the essential frequencies in question are effectively the ones used to achieve generalization in the first place. Surprisingly, images seen through these modulatory masks are not recognizable and resemble texture-like patterns.

Humans have an inherent ability to learn novel concepts from only a few samples and generalize these concepts to different situations. Even though today's machine learning models excel with a plethora of training data on standard recognition tasks, a considerable gap exists between machine-level pattern recognition and human-level concept learning. To narrow this gap, the Bongard problems (BPs) were introduced as an inspirational challenge for visual cognition in intelligent systems. Despite new advances in representation learning and learning to learn, BPs remain a daunting challenge for modern AI. Inspired by the original one hundred BPs, we propose a new benchmark Bongard-LOGO for human-level concept learning and reasoning. We develop a program-guided generation technique to produce a large set of human-interpretable visual cognition problems in action-oriented LOGO language. Our benchmark captures three core properties of human cognition: 1) context-dependent perception, in which the same object may have disparate interpretations given different contexts; 2) analogy-making perception, in which some meaningful concepts are traded off for other meaningful concepts; and 3) perception with a few samples but infinite vocabulary. In experiments, we show that the state-of-the-art deep learning methods perform substantially worse than human subjects, implying that they fail to capture core human cognition properties. Finally, we discuss research directions towards a general architecture for visual reasoning to tackle this benchmark., Comment: 22 pages, NeurIPS 2020

Understanding the learning dynamics and inductive bias of neural networks (NNs) is hindered by the opacity of the relationship between NN parameters and the function represented. We propose reparametrizing ReLU NNs as continuous piecewise linear splines. Using this spline lens, we study learning dynamics in shallow univariate ReLU NNs, finding unexpected insights and explanations for several perplexing phenomena. We develop a surprisingly simple and transparent view of the structure of the loss surface, including its critical and fixed points, Hessian, and Hessian spectrum. We also show that standard weight initializations yield very flat functions, and that this flatness, together with overparametrization and the initial weight scale, is responsible for the strength and type of implicit regularization, consistent with recent work arXiv:1906.05827. Our implicit regularization results are complementary to recent work arXiv:1906.07842, done independently, which showed that initialization scale critically controls implicit regularization via a kernel-based argument. Our spline-based approach reproduces their key implicit regularization results but in a far more intuitive and transparent manner. Going forward, our spline-based approach is likely to extend naturally to the multivariate and deep settings, and will play a foundational role in efforts to understand neural networks. Videos of learning dynamics using a spline-based visualization are available at http://shorturl.at/tFWZ2., Comment: 14 pages, 4 figures in main text

Artificial intelligence and machine learning are experiencing widespread adoption in industry and academia. This has been driven by rapid advances in the applications and accuracy of AI through increasingly complex algorithms and models; this, in turn, has spurred research into specialized hardware AI accelerators. Given the rapid pace of advances, it is easy to forget that they are often developed and evaluated in a vacuum without considering the full application environment. This paper emphasizes the need for a holistic, end-to-end analysis of AI workloads and reveals the "AI tax." We deploy and characterize Face Recognition in an edge data center. The application is an AI-centric edge video analytics application built using popular open source infrastructure and ML tools. Despite using state-of-the-art AI and ML algorithms, the application relies heavily on pre-and post-processing code. As AI-centric applications benefit from the acceleration promised by accelerators, we find they impose stresses on the hardware and software infrastructure: storage and network bandwidth become major bottlenecks with increasing AI acceleration. By specializing for AI applications, we show that a purpose-built edge data center can be designed for the stresses of accelerated AI at 15% lower TCO than one derived from homogeneous servers and infrastructure., Comment: 32 pages. 16 figures. Submitted to ACM "Transactions on Computer Systems."

Adversarial Attacks are still a significant challenge for neural networks. Recent work has shown that adversarial perturbations typically contain high-frequency features, but the root cause of this phenomenon remains unknown. Inspired by theoretical work on linear full-width convolutional models, we hypothesize that the local (i.e. bounded-width) convolutional operations commonly used in current neural networks are implicitly biased to learn high frequency features, and that this is one of the root causes of high frequency adversarial examples. To test this hypothesis, we analyzed the impact of different choices of linear and nonlinear architectures on the implicit bias of the learned features and the adversarial perturbations, in both spatial and frequency domains. We find that the high-frequency adversarial perturbations are critically dependent on the convolution operation because the spatially-limited nature of local convolutions induces an implicit bias towards high frequency features. The explanation for the latter involves the Fourier Uncertainty Principle: a spatially-limited (local in the space domain) filter cannot also be frequency-limited (local in the frequency domain). Furthermore, using larger convolution kernel sizes or avoiding convolutions (e.g. by using Vision Transformers architecture) significantly reduces this high frequency bias, but not the overall susceptibility to attacks. Looking forward, our work strongly suggests that understanding and controlling the implicit bias of architectures will be essential for achieving adversarial robustness., Comment: 23 pages, 11 figures, 12 Tables

Learning interpretable and disentangled representations is a crucial yet challenging task in representation learning. In this work, we focus on semi-supervised disentanglement learning and extend work by Locatello et al. (2019) by introducing another source of supervision that we denote as label replacement. Specifically, during training, we replace the inferred representation associated with a data point with its ground-truth representation whenever it is available. Our extension is theoretically inspired by our proposed general framework of semi-supervised disentanglement learning in the context of VAEs which naturally motivates the supervised terms commonly used in existing semi-supervised VAEs (but not for disentanglement learning). Extensive experiments on synthetic and real datasets demonstrate both quantitatively and qualitatively the ability of our extension to significantly and consistently improve disentanglement with very limited supervision.