244 results on '"Paszek, A. P."'
Search Results
2. The microenvironment dictates glycocalyx construction and immune surveillance
- Author
-
Tharp, Kevin M, Park, Sangwoo, Timblin, Greg A, Richards, Alicia L, Berg, Jordan A, Twells, Nicholas M, Riley, Nicholas M, Peltan, Egan L, Shon, D Judy, Stevenson, Erica, Tsui, Kimberly, Palomba, Francesco, Lefebvre, Austin EYT, Soens, Ross W, Ayad, Nadia ME, Hoeve-Scott, Johanna ten, Healy, Kevin, Digman, Michelle, Dillin, Andrew, Bertozzi, Carolyn R, Swaney, Danielle L, Mahal, Lara K, Cantor, Jason R, Paszek, Matthew J, and Weaver, Valerie M
- Subjects
Biomedical and Clinical Sciences ,Immunology ,Cancer ,ECM ,Mechanopharmacology ,bleb ,glycoform ,glycome ,glycosylation ,immune surveillance ,lectin array ,lectin microarray ,mechano-metabolic ,metabolism ,microenvironment ,sialic acid - Abstract
Efforts to identify anti-cancer therapeutics and understand tumor-immune interactions are built with in vitro models that do not match the microenvironmental characteristics of human tissues. Using in vitro models which mimic the physical properties of healthy or cancerous tissues and a physiologically relevant culture medium, we demonstrate that the chemical and physical properties of the microenvironment regulate the composition and topology of the glycocalyx. Remarkably, we find that cancer and age-related changes in the physical properties of the microenvironment are sufficient to adjust immune surveillance via the topology of the glycocalyx, a previously unknown phenomenon observable only with a physiologically relevant culture medium.
- Published
- 2023
3. Unifying duplication episode clustering and gene-species mapping inference
- Author
-
Górecki, Paweł, Rutecka, Natalia, Mykowiecka, Agnieszka, and Paszek, Jarosław
- Published
- 2024
- Full Text
- View/download PDF
4. Immunoengineering can overcome the glycocalyx armour of cancer cells
- Author
-
Park, Sangwoo, Colville, Marshall J., Paek, Justin H., Shurer, Carolyn R., Singh, Arun, Secor, Erica J., Sailer, Cooper J., Huang, Ling-Ting, Kuo, Joe Chin-Hun, Goudge, Marc C., Su, Jin, Kim, Minsoo, DeLisa, Matthew P., Neelamegham, Sriram, Lammerding, Jan, Zipfel, Warren R., Fischbach, Claudia, Reesink, Heidi L., and Paszek, Matthew J.
- Published
- 2024
- Full Text
- View/download PDF
5. Elevated factor XI is associated with increased risk of recurrent cerebral venous sinus thrombosis: a cohort study
- Author
-
Paszek, Elżbieta, Polak, Maciej, and Undas, Anetta
- Published
- 2024
- Full Text
- View/download PDF
6. Ustrój Republiki Weneckiej oczami polskich podróżników na przełomie XVIII i XIX wieku
- Author
-
Weronika Paszek
- Subjects
republika wenecka ,ustrój ,władza ,podróże ,pamiętniki ,History (General) and history of Europe - Abstract
Artykuł przedstawia postrzeganie ustroju Republiki Weneckiej przez polskich podróżników na przełomie XVIII i XIX w. W relacjach z podróży peregrynanci opisywali poszczególne organy władzy, często porównując je z ich odpowiednikami na ziemiach polskich, bądź wyrażali chęć wprowadzenia podobnych rozwiązań w Rzeczypospolitej Obojga Narodów. Opisywano także zachowania szlachty oraz doszukiwano się przyczyn słabnącej potęgi miasta i upadku Republiki Weneckiej, co także wielokrotnie nawiązywało do sytuacji w ojczyźnie pamiętnikarzy.
- Published
- 2024
- Full Text
- View/download PDF
7. Intersectional trends in child and adolescent suicide‐related emergency department encounters in Florida (2016‒2021)
- Author
-
Laura M. Prichett, Claudia Paszek, and Emily E. Haroz
- Subjects
adolescent ,disparities ,equity ,mental health ,prevention ,screening ,Medical emergencies. Critical care. Intensive care. First aid ,RC86-88.9 - Abstract
Abstract Objectives Emergency department (ED) visits resulting from suicidal thoughts and behaviors have increased at alarming rates among youth in the United States in recent years. Understanding trends among specific racial, ethnic, gender, and/or age subgroups can provide the foundation for tailored solutions for those with the greatest need for support. Methods Using data from the Florida State Emergency Department Database from 2016 to 2021, we calculated annual rates of ED suicide‐related diagnoses per 1000 young people aged 8‒21 years. We explored annual trends by age and intersectional race/ethnicity and sex subgroups. Additionally, we examined subgroup‐specific stratified percent changes from 2016 to 2019 and 2016 to 2021. Results Among 8‒12‐year olds, the highest rates of suicide‐related ED encounters occurred among Black males and females and this trend was steady over time. Among 13‒21‐year‐old patients, Black and White females displayed the highest rates of suicide‐related ED encounters across 2016‒2021, and all subgroups experienced a slight decline in 2020 and 2021. Rates generally increased between 2016 and 2019, with the largest percent increase (10.6%) occurring among Black females aged 18‒21 years, whereas there was a trend of decreased rates among most subgroups between 2019 and 2021. Conclusions Across all years and age groups, Black females showed consistently higher rates of suicide‐related ED encounters than almost any other subgroup, supporting previous research that Black adolescent females may be disproportionately suffering from the mental health crisis faced by young people. Furthermore, preteen Black males need additional mental health support, as do adolescent and young adult White females.
- Published
- 2024
- Full Text
- View/download PDF
8. Oral arsenic administration to humanized UDP- glucuronosyltransferase 1 neonatal mice induces UGT1A1 through a dependence on Nrf2 and PXR
- Author
-
Yang, Xiaojing, Weber, André A, Mennillo, Elvira, Paszek, Miles, Wong, Samantha, Le, Sabrina, Teo, Jia Ying Ashley, Chang, Max, Benner, Christopher W, Tukey, Robert H, and Chen, Shujuan
- Subjects
Paediatrics ,Biomedical and Clinical Sciences ,Liver Disease ,Perinatal Period - Conditions Originating in Perinatal Period ,Pediatric ,Digestive Diseases ,Oral and gastrointestinal ,Good Health and Well Being ,Animals ,Mice ,Animals ,Newborn ,Arsenic ,Bilirubin ,Glucuronosyltransferase ,Liver ,NF-E2-Related Factor 2 ,Reactive Oxygen Species ,Pregnane X Receptor ,Uridine 5′-diphospho-glucuronosyltransferase ,animal model ,arsenic ,bilirubin ,cytochrome P450 ,intestinal epithelial cell (IEC) maturation ,intestinal metabolism ,nuclear factor erythroid-derived 2-like 2 (NFE2L2) ,oxidative stress ,pregnane X receptor ,Chemical Sciences ,Biological Sciences ,Medical and Health Sciences ,Biochemistry & Molecular Biology ,Biological sciences ,Biomedical and clinical sciences ,Chemical sciences - Abstract
Inorganic arsenic (iAs) is an environmental toxicant that can lead to severe health consequences, which can be exacerbated if exposure occurs early in development. Here, we evaluated the impact of oral iAs treatment on UDP-glucuronosyltransferase 1A1 (UGT1A1) expression and bilirubin metabolism in humanized UGT1 (hUGT1) mice. We found that oral administration of iAs to neonatal hUGT1 mice that display severe neonatal hyperbilirubinemia leads to induction of intestinal UGT1A1 and a reduction in total serum bilirubin values. Oral iAs administration accelerates neonatal intestinal maturation, an event that is directly associated with UGT1A1 induction. As a reactive oxygen species producer, oral iAs treatment activated the Keap-Nrf2 pathway in the intestinal tract and liver. When Nrf2-deficient hUGT1 mice (hUGT1/Nrf2-/-) were treated with iAs, it was shown that activated Nrf2 contributed significantly toward intestinal maturation and UGT1A1 induction. However, hepatic UGT1A1 was not induced upon iAs exposure. We previously demonstrated that the nuclear receptor PXR represses liver UGT1A1 in neonatal hUGT1 mice. When PXR was deleted in hUGT1 mice (hUGT1/Pxr-/-), derepression of UGT1A1 was evident in both liver and intestinal tissue in neonates. Furthermore, when neonatal hUGT1/Pxr-/- mice were treated with iAs, UGT1A1 was superinduced in both tissues, confirming PXR release derepressed key regulatory elements on the gene that could be activated by iAs exposure. With iAs capable of generating reactive oxygen species in both liver and intestinal tissue, we conclude that PXR deficiency in neonatal hUGT1/Pxr-/- mice allows greater access of activated transcriptional modifiers such as Nrf2 leading to superinduction of UGT1A1.
- Published
- 2023
9. Bone-matrix mineralization dampens integrin-mediated mechanosignalling and metastatic progression in breast cancer
- Author
-
Choi, Siyoung, Whitman, Matthew A., Shimpi, Adrian A., Sempertegui, Nicole D., Chiou, Aaron E., Druso, Joseph E., Verma, Akanksha, Lux, Stephanie C., Cheng, Zhu, Paszek, Matthew, Elemento, Olivier, Estroff, Lara A., and Fischbach, Claudia
- Published
- 2023
- Full Text
- View/download PDF
10. Unifying duplication episode clustering and gene-species mapping inference
- Author
-
Paweł Górecki, Natalia Rutecka, Agnieszka Mykowiecka, and Jarosław Paszek
- Subjects
Genomic duplication ,Gene-species mapping ,Duplication episode ,Gene tree ,Species tree ,Biology (General) ,QH301-705.5 ,Genetics ,QH426-470 - Abstract
Abstract We present a novel problem, called MetaEC, which aims to infer gene-species assignments in a collection of partially leaf-labeled gene trees labels by minimizing the size of duplication episode clustering (EC). This problem is particularly relevant in metagenomics, where incomplete data often poses a challenge in the accurate reconstruction of gene histories. To solve MetaEC, we propose a polynomial time dynamic programming (DP) formulation that verifies the existence of a set of duplication episodes from a predefined set of episode candidates. In addition, we design a method to infer distributions of gene-species mappings. We then demonstrate how to use DP to design an algorithm that solves MetaEC. Although the algorithm is exponential in the worst case, we introduce a heuristic modification of the algorithm that provides a solution with the knowledge that it is exact. To evaluate our method, we perform two computational experiments on simulated and empirical data containing whole genome duplication events, showing that our algorithm is able to accurately infer the corresponding events.
- Published
- 2024
- Full Text
- View/download PDF
11. Bacterial aggregation facilitates internalin-mediated invasion of Listeria monocytogenes
- Author
-
Liam Feltham, Josephine Moran, Marie Goldrick, Elizabeth Lord, David G. Spiller, Jennifer S. Cavet, Mark Muldoon, Ian. S. Roberts, and Pawel Paszek
- Subjects
Listeria monocytogenes ,host-pathogen interactions ,aggregation ,PrfA regulon ,live-cell microscopy ,Microbiology ,QR1-502 - Abstract
Dissemination of food-borne L. monocytogenes in the host relies on internalin-mediated invasion, but the underlying invasion strategies remain elusive. Here we use live-cell microscopy to follow single cell interactions between individual human cells and L. monocytogenes and elucidate mechanisms associated with internalin B (InlB)-mediated invasion. We demonstrate that whilst a replicative invasion of nonphagocytic cells is a rare event even at high multiplicities of invasion, L. monocytogenes overcomes this by utilising a strategy relaying on PrfA-mediated ActA-based aggregation. We show that L. monocytogenes forms aggregates in extracellular host cell environment, which promote approximately 5-fold more host cell adhesions than the non-aggregating actA-ΔC mutant (which lacks the C-terminus coding region), with the adhering bacteria inducing 3-fold more intracellular invasions. Aggregation is associated with robust MET tyrosine kinase receptor clustering in the host cells, a hallmark of InlB-mediated invasion, something not observed with the actA-ΔC mutant. Finally, we show via RNA-seq analyses that aggregation involves a global adaptive response to host cell environment (including iron depletion), resulting in metabolic changes in L. monocytogenes and upregulation of the PrfA virulence regulon. Overall, our analyses provide new mechanistic insights into internalin-mediated host-pathogen interactions of L. monocytogenes.
- Published
- 2024
- Full Text
- View/download PDF
12. Mechanical loading and hyperosmolarity as a daily resetting cue for skeletal circadian clocks
- Author
-
Michal Dudek, Dharshika R. J. Pathiranage, Beatriz Bano-Otalora, Anna Paszek, Natalie Rogers, Cátia F. Gonçalves, Craig Lawless, Dong Wang, Zhuojing Luo, Liu Yang, Farshid Guilak, Judith A. Hoyland, and Qing-Jun Meng
- Subjects
Science - Abstract
Abstract Daily rhythms in mammalian behaviour and physiology are generated by a multi-oscillator circadian system entrained through environmental cues (e.g. light and feeding). The presence of tissue niche-dependent physiological time cues has been proposed, allowing tissues the ability of circadian phase adjustment based on local signals. However, to date, such stimuli have remained elusive. Here we show that daily patterns of mechanical loading and associated osmotic challenge within physiological ranges reset circadian clock phase and amplitude in cartilage and intervertebral disc tissues in vivo and in tissue explant cultures. Hyperosmolarity (but not hypo-osmolarity) resets clocks in young and ageing skeletal tissues and induce genome-wide expression of rhythmic genes in cells. Mechanistically, RNAseq and biochemical analysis revealed the PLD2-mTORC2-AKT-GSK3β axis as a convergent pathway for both in vivo loading and hyperosmolarity-induced clock changes. These results reveal diurnal patterns of mechanical loading and consequent daily oscillations in osmolarity as a bona fide tissue niche-specific time cue to maintain skeletal circadian rhythms in sync.
- Published
- 2023
- Full Text
- View/download PDF
13. Analysis of the Model Used to Predict Continuous Deformations of the Land Surface in Areas Subject to Discontinuous Deformations—A Case Study
- Author
-
Justyna Paszek
- Subjects
continuous deformations ,inclinations of land surface ,geodetic measurements ,inclinations forecasting ,mining influences ,geometric-integral theory ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
This article analyses and evaluates the model used by the Jastrzebie Coal Company in Poland to forecast the values of continuous deformations of land surfaces caused by underground mining. Particular attention is paid to the values of terrain inclinations, which cause significant deflections of buildings located in mining areas affected by exploitation. The inclination forecasts were made using Bialek’s model, with the values of its parameters determined in situ and after completion of the exploitation of a longwall. The obtained results were compared with the values of the terrain inclinations calculated from the results of geodetic measurements carried out at observation points located near the buildings and discontinuous linear deformations (i.e., the ground steps). The conducted research shows that the correlations between the absolute values of the practical inclinations and the values of the theoretical inclinations were rather weak, as the values of their correlation coefficients did not exceed 0.24. The tested model underestimated 45.5% of the values of the inclinations observed in situ by an average of −53.5%. The model values of the inclinations for the remaining observed inclinations (54.5%) were overestimated by an average of 461.9%. The largest anomalies were obtained in the case of inclination values from points located near the ground steps. The effectiveness of predicting inclination values with a commonly used model is strongly reduced when discontinuous linear deformations appear. Nonetheless, it reflects well the mining area categories.
- Published
- 2024
- Full Text
- View/download PDF
14. Mechanical loading and hyperosmolarity as a daily resetting cue for skeletal circadian clocks
- Author
-
Dudek, Michal, Pathiranage, Dharshika R. J., Bano-Otalora, Beatriz, Paszek, Anna, Rogers, Natalie, Gonçalves, Cátia F., Lawless, Craig, Wang, Dong, Luo, Zhuojing, Yang, Liu, Guilak, Farshid, Hoyland, Judith A., and Meng, Qing-Jun
- Published
- 2023
- Full Text
- View/download PDF
15. Elevated plasma factor XI predicts cardiovascular events in patients with type 2 diabetes: a long-term observational study
- Author
-
Paszek, Elżbieta, Polak, Maciej, Bryk-Wiązania, Agata Hanna, Konieczyńska, Małgorzata, and Undas, Anetta
- Published
- 2023
- Full Text
- View/download PDF
16. The Promotive and Inhibitory Role of Long Non-Coding RNAs in Endometrial Cancer Course—A Review
- Author
-
Patryk Jasielski, Izabela Zawlik, Anna Bogaczyk, Natalia Potocka, Sylwia Paszek, Michał Maźniak, Aleksandra Witkoś, Adrianna Korzystka, Aleksandra Kmieć, and Tomasz Kluz
- Subjects
endometrial cancer ,lncRNA ,long non-coding RNA ,carcinogenesis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Endometrial cancer is one of the most common malignant tumours in women. The development of this tumour is associated with several genetic disorders, many of which are still unknown. One type of RNA molecules currently being intensively studied in many types of cancer are long non-coding RNAs (lncRNAs). LncRNA-coding genes occupy a large fraction of the human genome. LncRNAs regulate many aspects of cell development, metabolism, and other physiological processes. Diverse types of lncRNA can function as a tumour suppressor or an oncogene that can alter migration, invasion, cell proliferation, apoptosis, and immune system response. Recent studies suggest that selected lncRNAs are important in an endometrial cancer course. Our article describes over 70 lncRNAs involved in the development of endometrial cancer, which were studied via in vivo and in vitro research. It was proved that lncRNAs could both promote and inhibit the development of endometrial cancer. In the future, lncRNAs may become an important therapeutic target. The aim of this study is to review the role of lncRNAs in the development of carcinoma of uterine body.
- Published
- 2024
- Full Text
- View/download PDF
17. Elevated plasma factor XI predicts cardiovascular events in patients with type 2 diabetes: a long-term observational study
- Author
-
Elżbieta Paszek, Maciej Polak, Agata Hanna Bryk-Wiązania, Małgorzata Konieczyńska, and Anetta Undas
- Subjects
Factor XI ,Type 2 Diabetes Mellitus ,Myocardial Infarction, Stroke, Cardiovascular Mortality ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Abstract Background Type 2 diabetes mellitus (T2DM) patients are at high risk of cardiovascular (CV) events. Factor XI (FXI) is associated with arterial thromboembolism, including myocardial infarction (MI), stroke, and CV mortality. The role of FXI in T2DM is unknown. We investigated whether plasma FXI is associated with CV events in T2DM patients in long-term observation. Methods In 133 T2DM patients (aged 66 ± 8 years, 40.6% women, median T2DM duration 5 [2–10] years) we assessed plasma FXI levels, along with fibrin clot properties, thrombin generation, and fibrinolysis proteins. A composite endpoint of MI, stroke, or CV death, as well as CV mortality alone were assessed during a median follow-up of 72 months. Results Plasma FXI above the 120% upper normal limit was detected in 25 (18.8%) patients and showed positive association with LDL cholesterol and thrombin activatable fibrinolysis inhibitor, but not glycated hemoglobin, inflammatory markers or thrombin generation. The composite endpoint (n = 21, 15.8%) and CV death alone (n = 16, 12%) were more common in patients with elevated FXI (hazard ratio [HR] 10.94, 95% confidence interval [CI] 4.46–26.87, p
- Published
- 2023
- Full Text
- View/download PDF
18. The lamin A/C Ig-fold undergoes cell density-dependent changes that alter epitope binding
- Author
-
Melanie Wallace, Gregory R. Fedorchak, Richa Agrawal, Rachel M. Gilbert, Jineet Patel, Sangwoo Park, Matthew Paszek, and Jan Lammerding
- Subjects
Lamins ,immunofluorescence ,Ig-fold ,cell density ,cell spreading ,mechanobiology ,Genetics ,QH426-470 ,Cytology ,QH573-671 - Abstract
ABSTRACTLamins A/C are nuclear intermediate filament proteins that are involved in diverse cellular mechanical and biochemical functions. Here, we report that recognition of Lamins A/C by a commonly used antibody (JOL-2) that binds the Lamin A/C Ig-fold and other antibodies targeting similar epitopes is highly dependent on cell density, even though Lamin A/Clevels do not change. We propose that the effect is caused by partial unfolding or masking of the C’E and/or EF loops of the Ig-fold in response to cell spreading. Surprisingly, JOL-2 antibody labeling was insensitive to disruption of cytoskeletal filaments or the Linker of Nucleoskeleton and Cytoskeleton (LINC) complex. Furthermore, neither nuclear stiffness nor nucleo-cytoskeletal force transmission changed with cell density. These findings are important for the interpretation of immunofluorescence data for Lamin A/C and also raise the intriguing prospect that the conformational changes may play a role in Lamin A/C mediated cellular function.
- Published
- 2023
- Full Text
- View/download PDF
19. Absolute Quantification of Selected microRNAs Expression in Endometrial Cancer by Digital PCR
- Author
-
Anna Bogaczyk, Natalia Potocka, Sylwia Paszek, Marzena Skrzypa, Alina Zuchowska, Michał Kośny, Marta Kluz, Izabela Zawlik, and Tomasz Kluz
- Subjects
miRNA ,endometrial cancer ,miR-21-5p ,miR-205-5p ,miR-222-3p ,reference gene ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
MicroRNAs (miRNA) are involved in the process of carcinogenesis, including the development of endometrial cancer (EC). This study aimed to investigate the association between the expression of three miRNAs (miR-21-5p, miR-205-5p, and miR-222-3p) in endometrial cancer tissues. In addition, the stability of expression of SNORD48 and U6, which were initially planned to be used as reference miRNAs for normalization, was investigated. Endometrial tissue was obtained from 111 patients with EC during hysterectomy and from 19 patients undergoing surgery for uterine fibroids or pelvic organ prolapse as a control group without neoplastic changes. Our study was based on calculations made with a digital PCR method (Qiagen, Hilden, Germany) to measure the absolute expression. In the endometrial cancer tissue, miR-205-5p was upregulated, while miR-222-3p and SNORD48 were downregulated compared to the control group. We detected statistically significant correlation of miR-205-5p, U6, and SNORD48 expression with different histological grades; the expression of miR-205-5p increases with the histopathological grade advancement (intraepithelial neoplasia- EIN = 1590, G1 = 3367.2, G2 = 8067 and G3 = 20,360), while U6 and SNORD expression decreases from EIN to G2 and increases again in the G3 grade (U6: EIN = 19,032, G1 = 16,482.4, G2 = 13,642.4, G3 = 133,008; SNORD48: EIN = 97,088, G1 = 59,520, G2 = 43,544, G3 = 227,200). Our study suggests that upregulation of miR-205-5p and downregulation of miR-222-3p and SNORD48 may influence development of endometrial cancer. Moreover, miR-205-5p, U6, and SNORD48 expression changes may be associated with progression of endometrial cancer. The results also indicate that SNORD48 and U6, commonly used as internal references, may influence endometrial cancer development and progression; therefore, they should not be used as references. However, it is important to note that further research is required to understand their role in endometrial cancer.
- Published
- 2024
- Full Text
- View/download PDF
20. Live-cell imaging reveals single-cell and population-level infection strategies of Listeria monocytogenes in macrophages
- Author
-
Josephine Moran, Liam Feltham, James Bagnall, Marie Goldrick, Elizabeth Lord, Catherine Nettleton, David G. Spiller, Ian Roberts, and Pawel Paszek
- Subjects
Listeria monocytogenes ,macrophage ,single cell heterogeneity ,phagocytosis ,PrfA regulon ,listeriolysin ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Pathogens have developed intricate strategies to overcome the host’s innate immune responses. In this paper we use live-cell microscopy with a single bacterium resolution to follow in real time interactions between the food-borne pathogen L. monocytogenes and host macrophages, a key event controlling the infection in vivo. We demonstrate that infection results in heterogeneous outcomes, with only a subset of bacteria able to establish a replicative invasion of macrophages. The fate of individual bacteria in the same host cell was independent from the host cell and non-cooperative, being independent from co-infecting bacteria. A higher multiplicity of infection resulted in a reduced probability of replication of the overall bacterial population. By use of internalisation assays and conditional probabilities to mathematically describe the two-stage invasion process, we demonstrate that the higher MOI compromises the ability of macrophages to phagocytose bacteria. We found that the rate of phagocytosis is mediated via the secreted Listeriolysin toxin (LLO), while the probability of replication of intracellular bacteria remained constant. Using strains expressing fluorescent reporters to follow transcription of either the LLO-encoding hly or actA genes, we show that replicative bacteria exhibited higher PrfA regulon expression in comparison to those bacteria that did not replicate, however elevated PrfA expression per se was not sufficient to increase the probability of replication. Overall, this demonstrates a new role for the population-level, but not single cell, PrfA-mediated activity to regulate outcomes of host pathogen interactions.
- Published
- 2023
- Full Text
- View/download PDF
21. NCoR1 Protects Mice From Dextran Sodium Sulfate–Induced Colitis by Guarding Colonic Crypt Cells From Luminal Insult
- Author
-
Mennillo, Elvira, Yang, Xiaojing, Paszek, Miles, Auwerx, Johan, Benner, Christopher, and Chen, Shujuan
- Subjects
Medical Biotechnology ,Biological Sciences ,Biomedical and Clinical Sciences ,Genetics ,Stem Cell Research - Nonembryonic - Non-Human ,Autoimmune Disease ,Digestive Diseases ,Stem Cell Research ,Cancer ,Inflammatory Bowel Disease ,2.1 Biological and endogenous factors ,Aetiology ,Acetylation ,Adult Stem Cells ,Animals ,Apoptosis ,Butyrates ,Cell Proliferation ,Colitis ,Ulcerative ,Colon ,Dextran Sulfate ,Disease Models ,Animal ,Epigenesis ,Genetic ,Epithelial Cells ,Female ,Histones ,Humans ,Intestinal Mucosa ,Male ,Mice ,Mice ,Transgenic ,Nuclear Receptor Co-Repressor 1 ,Organoids ,Primary Cell Culture ,NCoR1 ,Ulcerative Colitis ,Colonic Crypt Cell ,Butyrate ,Biochemistry and cell biology ,Clinical sciences - Abstract
Background & aimsColonic stem cells are essential for producing the mucosal lining, which in turn protects stem cells from insult by luminal factors. Discovery of genetic and biochemical events that control stem cell proliferation and differentiation can be leveraged to decipher the causal factors of ulcerative colitis and aid the development of more effective therapy.MethodsWe performed in vivo and in vitro studies from control (nuclear receptor corepressor 1 [NCoR1F/F]) and intestinal epithelial cell-specific NCoR1-deficient mice (NCoR1ΔIEC). Mice were challenged with dextran sodium sulfate to induce experimental ulcerative colitis, followed by colitis examination, barrier permeability analysis, cell proliferation immunostaining assays, and RNA sequencing analysis. By using crypt cultures, the organoid-forming efficiency, cell proliferation, apoptosis, and histone acetylation were analyzed after butyrate and/or tumor necrosis factor α treatments.ResultsNCoR1ΔIEC mice showed a dramatic increase in disease severity in this colitis model, with suppression of proliferative cells at the crypt base as an early event and a concomitant increase in barrier permeability. Genome expression patterns showed an important role for NCoR1 in colonic stem cell proliferation and secretory cell differentiation. Colonic organoids cultured from NCoR1ΔIEC mice were more sensitive to butyrate-induced cell growth inhibition and apoptosis, which were exaggerated further by tumor necrosis factor α co-treatment, which was accompanied by increased histone acetylation.ConclusionsNCoR1 regulates colonic stem cell proliferation and secretory cell differentiation. When NCoR1 is disrupted, barrier protection is weakened, allowing luminal products such as butyrate to penetrate and synergistically damage the colonic crypt cells. Transcript profiling: RNA sequencing data have been deposited in the GEO database, accession number: GSE136153.
- Published
- 2020
22. NRF2-Independent Regulation of Intestinal Constitutive Androstane Receptor by the Pro-Oxidants Cadmium and Isothiocyanate in hUGT1 Mice
- Author
-
Paszek, Miles and Tukey, Robert H
- Subjects
Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Digestive Diseases ,Pediatric ,Nutrition ,Biotechnology ,Good Health and Well Being ,Animals ,Animals ,Newborn ,Bilirubin ,Biomarkers ,Cadmium ,Constitutive Androstane Receptor ,Female ,Glucuronosyltransferase ,Humans ,Intestinal Mucosa ,Isothiocyanates ,Male ,Mice ,Knockout ,NF-E2-Related Factor 2 ,Oxidative Stress ,Reactive Oxygen Species ,Receptors ,Cytoplasmic and Nuclear ,Pharmacology & Pharmacy ,Pharmacology and pharmaceutical sciences - Abstract
Environmental toxicants such as heavy metals from contaminated water or soil and isothiocyanates (ITC) from dietary sources act as pro-oxidants by directly generating reactive oxygen species (ROS) or through depleting cellular antioxidants such as glutathione. Toxicants can alter drug metabolism, and it was reported that CYP2B10 and UGT1A1 are induced by phenethyl isothiocyanate (PEITC) through the constitutive androstane receptor (CAR). The possibility that nuclear factor erythroid 2-related factor 2 (NRF2), the master regulator of the antioxidant response, could coactivate CAR was investigated in neonatal hUGT1/Nrf2 -/- mice. Neonatal mice were treated with PEITC or cadmium (Cd2+) by oral gavage for 2 days. Both PEITC and Cd2+ induced UGT1A1 RNA and protein in intestinal tissues in both hUGT1/Nrf2 +/- and hUGT1/Nrf2 -/- neonates, indicating NRF2-independent regulation of UGT1A1. Increases in CYP2B10 RNA in intestinal tissues were observed following PEITC or Cd2+ exposure. Activation of intestinal CAR by Cd2+ exposure was directly assessed by nuclear fractionation and Western blot analyses at 0.5, 1, 2, and 4 hours after treatment in hUGT1 neonates and after 48 hours in hUGT1/Nrf2 +/- and hUGT1/Nrf2 -/- neonates. CAR localized to the nucleus independently of NRF2 48 hours after exposure. Substantial CAR localization to the nucleus occurred at the 2- and 4-hour time points, coinciding with a decrease in phosphorylation of cytoplasmic extracellular signal-regulated kinases 1 and 2 and a nuclear increase in P38/p-P38 content. This suggests that a novel oxidative stress-MAPK-CAR axis exists with phenotypic consequences. SIGNIFICANCE STATEMENT: Pro-oxidant toxicants can alter drug metabolism through activation of CAR, independent of the NRF2-KEAP1 signaling pathway. Changes in proteins associated with drug metabolism and linked to increases in intestinal maturation are mediated through an oxidative stress-MAPK-CAR axis.
- Published
- 2020
23. The use of PSS2A system stabilisers to damp electromechanical swings in medium voltage networks with distributed energy sources
- Author
-
Stefan Paszek, Adrian Nocoń, and Piotr Pruski
- Subjects
electromechanical swings ,distributed generation ,medium-voltage network power system stabilisers ,power system design ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
In this paper, the design issue of effective damping of electromechanical swings in a medium voltage network with distributed generation by the use of a PSS2A type power system stabiliser is described. This stabiliser was installed in the generating unit with the highest rated power. Time constants of correction blocks, as well as the main gain, were determined by analyzing a single-machine system, generating unit – infinite bus. The time constants were calculated on the basis of the frequency-phase transfer functions both of the electromagnetic moment to the voltage regulator reference voltage and of the generator voltage to the voltage regulator reference voltage, under the assumption of an infinite and real value of the generating unit inertia time constant for various initial generator loads. The main stabiliser gain was calculated by analyzing the position, on the complex plane, of eigenvalues of the state matrix of the single-machine system, linearised around a steady operating point, at the changed value of this gain.
- Published
- 2022
- Full Text
- View/download PDF
24. Variability of the innate immune response is globally constrained by transcriptional bursting
- Author
-
Nissrin Alachkar, Dale Norton, Zsofia Wolkensdorfer, Mark Muldoon, and Pawel Paszek
- Subjects
transcriptional bursting ,burst size ,burst frequency ,stochastic transcription ,telegraph model ,innate immunity ,Biology (General) ,QH301-705.5 - Abstract
Transcription of almost all mammalian genes occurs in stochastic bursts, however the fundamental control mechanisms that allow appropriate single-cell responses remain unresolved. Here we utilise single cell genomics data and stochastic models of transcription to perform global analysis of the toll-like receptor (TLR)-induced gene expression variability. Based on analysis of more than 2000 TLR-response genes across multiple experimental conditions we demonstrate that the single-cell, gene-by-gene expression variability can be empirically described by a linear function of the population mean. We show that response heterogeneity of individual genes can be characterised by the slope of the mean-variance line, which captures how cells respond to stimulus and provides insight into evolutionary differences between species. We further demonstrate that linear relationships theoretically determine the underlying transcriptional bursting kinetics, revealing different regulatory modes of TLR response heterogeneity. Stochastic modelling of temporal scRNA-seq count distributions demonstrates that increased response variability is associated with larger and more frequent transcriptional bursts, which emerge via increased complexity of transcriptional regulatory networks between genes and different species. Overall, we provide a methodology relying on inference of empirical mean-variance relationships from single cell data and new insights into control of innate immune response variability.
- Published
- 2023
- Full Text
- View/download PDF
25. Overexpression of IκB⍺ modulates NF-κB activation of inflammatory target gene expression
- Author
-
Polly Downton, James S. Bagnall, Hazel England, David G. Spiller, Neil E. Humphreys, Dean A. Jackson, Pawel Paszek, Michael R. H. White, and Antony D. Adamson
- Subjects
NF-κB ,inflammation ,IκB⍺ ,overexpression ,gene expression ,localisation ,Biology (General) ,QH301-705.5 - Abstract
Cells respond to inflammatory stimuli such as cytokines by activation of the nuclear factor-κB (NF-κB) signalling pathway, resulting in oscillatory translocation of the transcription factor p65 between nucleus and cytoplasm in some cell types. We investigate the relationship between p65 and inhibitor-κB⍺ (IκBα) protein levels and dynamic properties of the system, and how this interaction impacts on the expression of key inflammatory genes. Using bacterial artificial chromosomes, we developed new cell models of IκB⍺-eGFP protein overexpression in a pseudo-native genomic context. We find that cells with high levels of the negative regulator IκBα remain responsive to inflammatory stimuli and maintain dynamics for both p65 and IκBα. In contrast, canonical target gene expression is dramatically reduced by overexpression of IκBα, but can be partially rescued by overexpression of p65. Treatment with leptomycin B to promote nuclear accumulation of IκB⍺ also suppresses canonical target gene expression, suggesting a mechanism in which nuclear IκB⍺ accumulation prevents productive p65 interaction with promoter binding sites. This causes reduced target promoter binding and gene transcription, which we validate by chromatin immunoprecipitation and in primary cells. Overall, we show how inflammatory gene transcription is modulated by the expression levels of both IκB⍺ and p65. This results in an anti-inflammatory effect on transcription, demonstrating a broad mechanism to modulate the strength of inflammatory response.
- Published
- 2023
- Full Text
- View/download PDF
26. Geological and technological viewpoint on 3D Deposit Model – examples of use in Pniówek Coal Mine
- Author
-
Golda Katarzyna, Paszek Lesław, and Kulpa Jarosław
- Subjects
Environmental sciences ,GE1-350 - Abstract
During the more than 3 years of the “Quality” program at JSW S.A., a geological database has been built from scratch, collecting data from all exploratory boreholes, roadway profiling and the results of chemical analyses in one place – placing particular emphasis on parameters affecting the quality of coke. Working with digital databases requires new competencies for geologists – the ability to efficiently obtain information ready for further processing. As intended, the geological model became the basis for forecasting the quantity and quality of mined coal used in coke production. In the course of the work, a discrepancy became apparent between the geological interpretation of the structure of the deposit – as understood by the assumptions of the geological documentation, and the technological conditions of mining. The article presents resulting changes in the approach to modeling lithology and quality parameters. In addition, examples of the application of the geological database and the geological model in the daily work of the geological department are presented.
- Published
- 2024
- Full Text
- View/download PDF
27. Study of Serum Copper and Zinc Levels and Serum Cu/Zn Ratio among Polish Women with Endometrial Cancer
- Author
-
Katarzyna Kluza, Izabela Zawlik, Magdalena Janowska, Aleksandra Kmieć, Sylwia Paszek, Natalia Potocka, Marzena Skrzypa, Alina Zuchowska, Marta Kluz, Andrzej Wróbel, Piotr Baszuk, Sandra Pietrzak, Wojciech Marciniak, Pawel Miotla, Jan Lubiński, Jacek Gronwald, and Tomasz Kluz
- Subjects
microelements ,cancer ,copper ,zinc ,endometrial cancer ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Background: Micronutrients are important components for the homeostasis of the human body. The studies available in the literature of the subject on their impact on the risk of population diseases, including malignant neoplasms, are ambiguous. In this paper, the relationship between Cu and Zn serum levels and the occurrence of endometrial cancer have been analyzed. Methods: 306 patients (153 test group and 153 control group) matched for age were analyzed for Cu and Zn levels. Microelements levels were determined for sera collected during the hospitalization of patients by means of an inductively coupled plasma mass spectrometry. In addition, the Cu/Zn ratio in the population included in the study was analyzed. Univariable and multivariable analyzes were used to examine the relationship between the factors under study and the incidence of endometrial cancer. Results: Lower levels of elements were observed in the study group compared with the control group (Cu: 959.39 μg/L vs. 1176.42 μg/L, p < 0.001; Zn: 707.05 μg/L vs. 901.67 μg/L, p < 0.001). A statistically significant relationship with the occurrence of endometrial cancer was observed for Cu and Zn. The patients with the lowest Cu level had a significantly higher occurrence of endometrial cancer compared with reference tertile (OR 8.54; p < 0.001). Similarly, compared with the reference tertile, the patients with the lowest Zn levels had a significantly greater incidence of endometrial cancer (OR 15.0; p < 0.001). Conclusion: The results of the study suggest an association of endometrial cancer occurrence with lower Cu and Zn serum levels.
- Published
- 2023
- Full Text
- View/download PDF
28. Multi-criteria optimization of the parameters of PSS3B system stabilizers operating in an extended power system with the use of a genetic algorithm
- Author
-
Adrian Nocoń, Stefan Paszek, and Piotr Pruski
- Subjects
power system ,power system stabilizers ,polyoptimization ,transient states ,electromechanical swings ,angular stability ,Information technology ,T58.5-58.64 ,Mathematics ,QA1-939 - Abstract
In the paper, the application of multi-criteria optimization of the parameters of PSS3B system stabilizers to damping electromechanical swings in an extended power system (PS) is presented. The calculations of the power system stabilizer (PSS) parameters were divided into two stages. In the first stage, single-machine systems, generating unit – infinite bus, of generating units critical for the angular stability of the PS were analyzed. Time constants and preliminary values of the PSS gains were calculated. In the second stage, the main one, the main gains on which the effectiveness of operation of PSSs depends the most were calculated by multi-criteria optimization of the extended PS. The calculations were carried out in several variants: for two-dimensional objective functions and the six-dimensional objective function. In multi-criteria optimization, the solution is not one set of PSS parameters, but a set of sets of these parameters, i.e. a set of compromises that were determined for each analyzed case. Additionally, for the six-dimensional compromise set, projections of this set on the planes connected with the quantities of individual generating units and the boundary of these projections on these planes were determined. A genetic algorithm adapted to multi-criteria issues was used to minimize the multivariate objective function. Sample calculations were made for the model of the National (Polish) Power System taking into account 57 selected generating units operating in high and extra high voltage networks (220 and 400 kV). The presented calculations show that the applied multi-criteria optimization of the PSS3B stabilizer parameters allows effectively damping electromechanical swings withoutworsening the voltagewaveforms of generating units in the extended PS.
- Published
- 2022
- Full Text
- View/download PDF
29. Using the LSTM Neural Network and the UWB Positioning System to Predict the Position of Low and High Speed Moving Objects
- Author
-
Krzysztof Paszek and Damian Grzechca
- Subjects
UWB ,IMU ,positioning ,position prediction ,neural network ,LSTM ,Chemical technology ,TP1-1185 - Abstract
Automation of transportation will play a crucial role in the future when people driving vehicles will be replaced by autonomous systems. Currently, the positioning systems are not used alone but are combined in order to create cooperative positioning systems. The ultra-wideband (UWB) system is an excellent alternative to the global positioning system (GPS) in a limited area but has some drawbacks. Despite many advantages of various object positioning systems, none is free from the problem of object displacement during measurement (data acquisition), which affects positioning accuracy. In addition, temporarily missing data from the absolute positioning system can lead to dangerous situations. Moreover, data pre-processing is unavoidable and takes some time, affecting additionally the object’s displacement in relation to its previous position and its starting point of the new positioning process. So, the prediction of the position of an object is necessary to minimize the time when the position is unknown or out of date, especially when the object is moving at high speed and the position update rate is low. This article proposes using the long short-term memory (LSTM) artificial neural network to predict objects’ positions based on historical data from the UWB system and inertial navigation. The proposed solution creates a reliable positioning system that predicts 10 positions of low and high-speed moving objects with an error below 10 cm. Position prediction allows detection of possible collisions—the intersection of the trajectories of moving objects.
- Published
- 2023
- Full Text
- View/download PDF
30. Genre Knowledge and Writing Development: Results from the Writing Transfer Project
- Author
-
Driscoll, Dana Lynn, Paszek, Joseph, Gorzelsky, Gwen, Hayes, Carol L., and Jones, Edmund
- Abstract
Using a mixed-methods, multi-institutional design of general education writing courses at four institutions, this study examined genre as a key factor for understanding and promoting writing development. It thus aims to provide empirical validation of decades of theoretical work on and qualitative studies of genre and the nature of genre knowledge. While showing that both simplistic and nuanced genre knowledge promote writing development, our findings suggest that nuanced genre knowledge correlates with writing development over the course of a semester. Based on these findings, we propose an expanded view of Tardy's four genre knowledge components and argue for their explanatory power. We recognize these genre components can be cultivated by using three particular strategies: writing for nonclassroom audiences, using source texts explicitly to join existing disciplinary conversations, and cultivating two types of metacognitive awareness (awareness of the writing strategies used to complete specific tasks and awareness of one's levels of proficiency in particular types of writing knowledge). Findings can be used to enrich first-year or upper-division writing curricula in the areas of genre knowledge, audience awareness, and source use.
- Published
- 2020
- Full Text
- View/download PDF
31. Daily living skills scale: Development and preliminary validation of a new, open-source assessment of daily living skills
- Author
-
Mirko Uljarević, Emily K. Spackman, Ru Ying Cai, Katherine J. Paszek, Antonio Y. Hardan, and Thomas W. Frazier
- Subjects
assessment ,daily living skills ,adaptive functioning ,neurodevelopmental ,neuropsychiatric ,autism ,Psychiatry ,RC435-571 - Abstract
Autistic individuals and individuals with a range of other neurodevelopmental conditions (NDD) often present with lower levels of daily living skills (DLS) when compared to their neurotypical peers. Importantly, lower levels of DLS have been linked to a range of negative outcomes, including lower rates of post-secondary education, lower employment rates, and higher daily support needs across autism and NDD. However, there are currently no open-source informant-reported instruments for capturing key aspects of DLS. This study describes the development, refinement, and initial psychometric evaluation of a new, relatively brief (53-item). Daily Living Skills Scale (DLSS) in a sample of 1,361 children aged 2–17 years, Confirmatory Factor Analysis demonstrated an excellent fit of unidimensional model to the data (CFI = 0.953, TLI = 0.951, RMSEA = 0.073 [95% CI: 0.071–0.074]). The single-factor CFA model showed evidence of measurement invariance of factor loadings, thresholds, and residual variance (strict invariance) across sex, age, race, and ethnicity. Model reliability and internal consistency were excellent (ω = 0.98; α = 0.97). Conditional reliability estimates indicated very good reliability (= 0.80) for the total DLS scale from very low (θ = −4.2) to high (θ = +2.4) scores. Conceptually derived self-care, homecare, and community participation subscales also showed strong reliability and internal consistency. With further replication, the EFS has excellent potential for wide adoption across research and clinical contexts.
- Published
- 2023
- Full Text
- View/download PDF
32. Wpływ pandemii na branżę beauty. Analiza komunikacji marek sektora beauty w mediach społecznościowych
- Author
-
Sylwia Nessler and Agata Paszek
- Subjects
media społecznościowe ,sektor mody ,pandemia ,Ethnology. Social and cultural anthropology ,GN301-674 ,Communication. Mass media ,P87-96 - Abstract
Pandemia wirusa SARS-CoV-2 zatrzymała gospodarkę i wymusiła jej całkowitą reorganizację. Branże kreatywne każdego dnia walczą o podtrzymanie produkcji, zachowanie ciągłości finansowej i przeorganizowanie swoich struktur tak, aby dostosować się do prężnie rozwijającej się sprzedaży w trybie online. Te zmiany spowodowały wzrost znaczenia social mediów, influencer marketingu i e-commerce. Praca została oparta na analizie zmian, które zaszły w branży modowej podczas pandemii. Analizie poddano działania marek z branży modowej i sektora beauty w kampaniach internetowych i na kanałach w social mediach.
- Published
- 2021
- Full Text
- View/download PDF
33. Low profilin 1 serum levels are associated with diabetes, family history and multivessel lesions in patients with coronary artery disease
- Author
-
Elżbieta Paszek, Wojciech Zajdel, Krzysztof Plens, Krzysztof Żmudka, Jacek Legutko, and Paweł Kleczyński
- Subjects
Medicine - Abstract
Atherosclerosis, underlying coronary artery disease (CAD), is best characterized as a low-grade inflammatory condition, where cholesterol particles – mostly oxidized low-density lipoproteins (ox-LDL) – infiltrating the vessel wall act as an antigen and initiate an inflammatory response [1]. This approach has been explored for many years now but does not allow for a full understanding of the disease. Recently, the actin cytoskeleton and associated regulatory proteins have been gaining attention as contributors to the pathophysiology of CAD [2]. Among these, profilin 1 (Pfn1) is an emerging player in the field [3, 4]. Research showed that Pfn1 was overexpressed in atherosclerotic lesions in comparison to the healthy vessel wall [5]. In mice a deletion of one copy of the PFN1 gene increased the production of nitric oxide, lowered the expression of adhesion molecules and hindered macrophage infiltration, thereby protecting against atherosclerosis [6]. In diabetic atherosclerosis models, Pfn1 was overexpressed in endothelial cells exposed to advanced glycation end-products, accompanied by hallmarks of endothelial dysfunction [7]. Pfn1 was also implicated in the pathophysiology of acute coronary syndromes. It was found within thrombi retrieved from culprit arteries and correlated with symptom duration, as well as final Thrombolysis in Myocardial Infarction flow [8, 9].
- Published
- 2021
- Full Text
- View/download PDF
34. Hyaluronic acid synthesis, degradation, and crosslinking in equine osteoarthritis: TNF-α-TSG-6-mediated HC-HA formation
- Author
-
Diana C. Fasanello, Jin Su, Siyu Deng, Rose Yin, Marshall J. Colville, Joshua M. Berenson, Carolyn M. Kelly, Heather Freer, Alicia Rollins, Bettina Wagner, Felipe Rivas, Adam R. Hall, Elaheh Rahbar, Paul L. DeAngelis, Matthew J. Paszek, and Heidi L. Reesink
- Subjects
Synovial fluid ,Viscosity ,Microrheology ,SEC-MALS ,Heavy chain-hyaluronic acid ,Cartilage ,Diseases of the musculoskeletal system ,RC925-935 - Abstract
Abstract Background TNF-α-stimulated gene 6 (TSG-6) protein, a TNF-α-responsive hyaladherin, possesses enzymatic activity that can catalyze covalent crosslinks of the polysaccharide hyaluronic acid (HA) to another protein to form heavy chain-hyaluronic acid (HC-HA) complexes in pathological conditions such as osteoarthritis (OA). Here, we examined HA synthase and inflammatory gene expression; synovial fluid HA, TNF-α, and viscosity; and TSG-6-mediated HC-HA complex formation in an equine OA model. The objectives of this study were to (1) evaluate the TNF-α-TSG-6-HC-HA signaling pathway across multiple joint tissues, including synovial membrane, cartilage, and synovial fluid, and (2) determine the impact of OA on synovial fluid composition and biophysical properties. Methods HA and inflammatory cytokine concentrations (TNF-α, IL-1β, CCL2, 3, 5, and 11) were analyzed in synovial fluid from 63 OA and 25 control joints, and HA synthase (HAS1-3), TSG-6, and hyaluronan-degrading enzyme (HYAL2, HEXA) gene expression was measured in synovial membrane and cartilage. HA molecular weight (MW) distributions were determined using agarose gel electrophoresis and solid-state nanopore measurements, and HC-HA complex formation was detected via immunoblotting and immunofluorescence. SEC-MALS was used to evaluate TSG-6-mediated HA crosslinking, and synovial fluid and HA solution viscosities were analyzed using multiple particle-tracking microrheology and microfluidic measurements, respectively. Results TNF-α concentrations were greater in OA synovial fluid, and TSG6 expression was upregulated in OA synovial membrane and cartilage. TSG-6-mediated HC-HA complex formation was greater in OA synovial fluid and tissues than controls, and HC-HA was localized to both synovial membrane and superficial zone chondrocytes in OA joints. SEC-MALS demonstrated macromolecular aggregation of low MW HA in the presence of TSG-6 and inter-α-inhibitor with concurrent increases in viscosity. Conclusions Synovial fluid TNF-α concentrations, synovial membrane and cartilage TSG6 gene expression, and HC-HA complex formation were increased in equine OA. Despite the ability of TSG-6 to induce macromolecular aggregation of low MW HA with resultant increases in the viscosity of low MW HA solutions in vitro, HA concentration was the primary determinant of synovial fluid viscosity rather than HA MW or HC-HA crosslinking. The TNF-α-TSG-6-HC-HA pathway may represent a potential therapeutic target in OA.
- Published
- 2021
- Full Text
- View/download PDF
35. Sprawozdanie z działalności Wyższego Seminarium Duchownego Towarzystwa Salezjańskiego w Krakowie w roku akademickim 2018/2019
- Author
-
Adam Paszek
- Subjects
Education ,Social Sciences - Published
- 2022
- Full Text
- View/download PDF
36. Post-transcriptional regulatory feedback encodes JAK-STAT signal memory of interferon stimulation
- Author
-
Eirini Kalliara, Malgorzata Kardynska, James Bagnall, David G. Spiller, Werner Müller, Dominik Ruckerl, Jarosław Śmieja, Subhra K. Biswas, and Pawel Paszek
- Subjects
JAK-STAT network ,STAT1 kinetics ,interferons ,pathway desensitisation ,mathematical modelling ,signal memory ,Immunologic diseases. Allergy ,RC581-607 - Abstract
Immune cells fine tune their responses to infection and inflammatory cues. Here, using live-cell confocal microscopy and mathematical modelling, we investigate interferon-induced JAK-STAT signalling in innate immune macrophages. We demonstrate that transient exposure to IFN-γ stimulation induces a long-term desensitisation of STAT1 signalling and gene expression responses, revealing a dose- and time-dependent regulatory feedback that controls JAK-STAT responses upon re-exposure to stimulus. We show that IFN-α/β1 elicit different level of desensitisation from IFN-γ, where cells refractory to IFN-α/β1 are sensitive to IFN-γ, but not vice versa. We experimentally demonstrate that the underlying feedback mechanism involves regulation of STAT1 phosphorylation but is independent of new mRNA synthesis and cognate receptor expression. A new feedback model of the protein tyrosine phosphatase activity recapitulates experimental data and demonstrates JAK-STAT network’s ability to decode relative changes of dose, timing, and type of temporal interferon stimulation. These findings reveal that STAT desensitisation renders cells with signalling memory of type I and II interferon stimulation, which in the future may improve administration of interferon therapy.
- Published
- 2022
- Full Text
- View/download PDF
37. Potential Prognostic Value of GATA4 Depends on the p53 Expression in Primary Glioblastoma Patients
- Author
-
Berenika Trąbska-Kluch, Marcin Braun, Magdalena Orzechowska, Sylwia Paszek, Alina Zuchowska, Julia Sołek, Adam Kluska, Jacek Fijuth, Dorota Jesionek-Kupnicka, and Izabela Zawlik
- Subjects
glioblastoma ,GATA4 promoter methylation ,GATA4 protein expression ,TP53 abnormalities ,Genetics ,QH426-470 - Abstract
Background: Primary glioblastoma is characterized by an extremely poor prognosis. The promoter methylation of GATA4 leads to the loss of its expression in many cancer types. The formation of high-grade astrocytomas can be promoted by the concurrent loss of TP53 and GATA4 in normal human astrocytes. Nevertheless, the impact of GATA4 alterations with linkage to TP53 changes in gliomagenesis is poorly understood. This study aimed to evaluate GATA4 protein expression, GATA4 promoter methylation, p53 expression, TP53 promoter methylation, and mutation status in patients with primary glioblastoma and to assess the possible prognostic impact of these alterations on overall survival. Materials and Methods: Thirty-one patients with primary glioblastoma were included. GATA4 and p53 expressions were determined immunohistochemically, and GATA4 and TP53 promoter methylations were analyzed via methylation-specific PCR. TP53 mutations were investigated via Sanger sequencing. Results: The prognostic value of GATA4 depends on p53 expression. Patients without GATA4 protein expression were more frequently negative for TP53 mutations and had better prognoses than the GATA4 positive patients. In patients positive for GATA4 protein expression, p53 expression was associated with the worst outcome. However, in patients positive for p53 expression, the loss of GATA4 protein expression seemed to be associated with improved prognosis. GATA4 promoter methylation was not associated with a lack of GATA4 protein expression. Conclusions: Our data indicate that there is a possibility that GATA4 could function as a prognostic factor in glioblastoma patients, but in connection with p53 expression. A lack of GATA4 expression is not dependent on GATA4 promoter methylation. GATA4 alone has no influence on survival time in glioblastoma patients.
- Published
- 2023
- Full Text
- View/download PDF
38. Heat shock response regulates stimulus-specificity and sensitivity of the pro-inflammatory NF-κB signalling
- Author
-
Anna Paszek, Małgorzata Kardyńska, James Bagnall, Jarosław Śmieja, David G. Spiller, Piotr Widłak, Marek Kimmel, Wieslawa Widlak, and Pawel Paszek
- Subjects
Heat-shock ,HSF1 ,NF-kappaB signalling ,IKK signalosome ,Single-cell analyses ,Live-cell imaging ,Medicine ,Cytology ,QH573-671 - Abstract
Abstract Background Ability to adapt to temperature changes trough the Heat Shock Response (HSR) pathways is one of the most fundamental and clinically relevant cellular response systems. Heat Shock (HS) affects the signalling and gene expression responses of the Nuclear Factor κB (NF-κB) transcription factor, a critical regulator of proliferation and inflammation, however, our quantitative understanding of how cells sense and adapt to temperature changes is limited. Methods We used live-cell time-lapse microscopy and mathematical modelling to understand the signalling of the NF-κB system in the human MCF7 breast adenocarcinoma cells in response to pro-inflammatory Interleukin 1β (IL1β) and Tumour Necrosis Factor α (TNFα) cytokines, following exposure to a 37–43 °C range of physiological and clinical temperatures. Results We show that exposure to 43 °C 1 h HS inhibits the immediate NF-κB signalling response to TNFα and IL1β stimulation although uptake of cytokines is not impaired. Within 4 h after HS treatment IL1β-induced NF-κB responses return to normal levels, but the recovery of the TNFα-induced responses is still affected. Using siRNA knock-down of Heat Shock Factor 1 (HSF1) we show that this stimulus-specificity is conferred via the Inhibitory κB kinase (IKK) signalosome where HSF1-dependent feedback regulates TNFα, but not IL1β-mediated IKK recovery post HS. Furthermore, we demonstrate that through the temperature-dependent denaturation and recovery of IKK, TNFα and IL1β-mediated signalling exhibit different temperature sensitivity and adaptation to repeated HS when exposed to a 37–43 °C temperature range. Specifically, IL1β-mediated NF-κB responses are more robust to temperature changes in comparison to those induced by TNFα treatment. Conclusions We demonstrate that the kinetics of the NF-κB system following temperature stress is cytokine specific and exhibit differential adaptation to temperature changes. We propose that this differential temperature sensitivity is mediated via the IKK signalosome, which acts as a bona fide temperature sensor trough the HSR cross-talk. This novel quantitative understanding of NF-κB and HSR interactions is fundamentally important for the potential optimization of therapeutic hyperthermia protocols. Video Abstract
- Published
- 2020
- Full Text
- View/download PDF
39. Investigation of synovial fluid lubricants and inflammatory cytokines in the horse: a comparison of recombinant equine interleukin 1 beta-induced synovitis and joint lavage models
- Author
-
Amanda Watkins, Diana Fasanello, Darko Stefanovski, Sydney Schurer, Katherine Caracappa, Albert D’Agostino, Emily Costello, Heather Freer, Alicia Rollins, Claire Read, Jin Su, Marshall Colville, Matthew Paszek, Bettina Wagner, and Heidi Reesink
- Subjects
Repeated arthrocentesis ,Lubricin ,Hyaluronic acid ,Chemokine ,Rheology ,Lubrication ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background Lameness is a debilitating condition in equine athletes that leads to more performance limitation and loss of use than any other medical condition. There are a limited number of non-terminal experimental models that can be used to study early inflammatory and synovial fluid biophysical changes that occur in the equine joint. Here, we compare the well-established carpal IL-1β-induced synovitis model to a tarsal intra-articular lavage model, focusing on serial changes in synovial fluid inflammatory cytokines/chemokines and the synovial fluid lubricating molecules lubricin/proteoglycan 4 and hyaluronic acid. The objectives of this study were to evaluate clinical signs; synovial membrane and synovial fluid inflammation; and synovial fluid lubricants and biophysical properties in response to carpal IL-1β synovitis and tarsal intra-articular lavage. Results Hyaluronic acid (HA) concentrations, especially high molecular weight HA, and synovial fluid viscosity decreased after both synovitis and lavage interventions. Synovial fluid lubricin concentrations increased 17–20-fold for both synovitis and lavage models, with similar changes in both affected and contralateral joints, suggesting that repeated arthrocentesis alone resulted in elevated synovial fluid lubricin concentrations. Synovitis resulted in a more severe inflammatory response based on clinical signs (temperature, heart rate, respiratory rate, lameness and joint effusion) and clinicopathological and biochemical parameters (white blood cell count, total protein, prostaglandin E2, sulfated glycosaminoglycans, tumor necrosis factor-α and CC chemokine ligands − 2, − 3, − 5 and − 11) as compared to lavage. Conclusions Synovial fluid lubricin increased in response to IL-1β synovitis and joint lavage but also as a result of repeated arthrocentesis. Frequent repeated arthrocentesis is associated with inflammatory changes, including increased sulfated glycosaminoglycan concentrations and decreased hyaluronic acid concentrations. Synovitis results in more significant inflammatory changes than joint lavage. Our data suggests that synovial fluid lubricin, TNF-α, CCL2, CCL3, CCL5, CCL11 and sGAG may be useful biomarkers for synovitis and post-lavage joint inflammation. Caution should be exercised when performing repeated arthrocentesis clinically or in experimental studies due to the inflammatory response and loss of HA and synovial fluid viscosity.
- Published
- 2021
- Full Text
- View/download PDF
40. Crypt organoids culture as an in vitro model in drug metabolism and cytotoxicity studies
- Author
-
Lu, Wenqi, Rettenmeier, Eva, Paszek, Miles, Yueh, Mei-Fei, Tukey, Robert H, Trottier, Jocelyn, Barbier, Olivier, and Chen, Shujuan
- Subjects
Pharmacology and Pharmaceutical Sciences ,Biomedical and Clinical Sciences ,Genetics ,Biotechnology ,Digestive Diseases ,Animals ,Apoptosis ,Camptothecin ,Cell Culture Techniques ,Cytochrome P-450 CYP3A ,Gene Expression ,Inactivation ,Metabolic ,Intestinal Mucosa ,Irinotecan ,Metabolic Clearance Rate ,Mice ,Mice ,Inbred C57BL ,Organoids ,Xenobiotics ,Pharmacology & Pharmacy ,Pharmacology and pharmaceutical sciences - Abstract
The gastrointestinal tract is enriched with xenobiotic processing proteins that play important roles in xenobiotic bioactivation, metabolism, and detoxification. The application of genetically modified mouse models has been instrumental in characterizing the function of xenobiotic processing genes (XPG) and their proteins in drug metabolism. Here, we report the utilization of three-dimensional crypt organoid cultures from these animal models to study intestinal drug metabolism and toxicity. With the successful culturing of crypt organoids, we profiled the abundance of Phase I and Phase II XPG expression, drug transporter gene expression, and xenobiotic nuclear receptor (XNR) gene expression. Functions of XNRs were examined by treating crypt cells with XNR prototypical agonists. Real-time quantitative polymerase chain reaction demonstrated that the representative downstream target genes were induced. These findings were validated from cultures developed from XNR-null mice. In crypt cultures isolated from Pxr-/- mice, pregnenolone 16α-carbonitrile failed to induce Cyp3a11 gene expression; similarly, WY14643 failed to induce Cyp4a10 in the Pparα-/- crypts. Crypt cultures from control (Ugt1F/F ) and intestinal epithelial cell (IEC) specific Ugt1 null mice (Ugt1ΔIEC ) were treated with camptothecin-11, an anticancer prodrug with severe intestinal toxicity that originates from insufficient UGT1A1-dependent glucuronidation of its active metabolite SN-38. In the absence of Ugt1 gene expression, Ugt1ΔIEC crypt cultures exhibit very limited production of SN-38 glucuronide, concordant with increased apoptosis in comparison with Ugt1F/F crypt cultures. This study suggests crypt organoid cultures as an effective in vitro model for studying intestinal drug metabolism and toxicity.
- Published
- 2017
41. Isothiocyanates induce UGT1A1 in humanized UGT1 mice in a CAR dependent fashion that is highly dependent upon oxidative stress.
- Author
-
Yoda, Emiko, Paszek, Miles, Konopnicki, Camille, Fujiwara, Ryoichi, Chen, Shujuan, and Tukey, Robert H
- Subjects
Liver ,Animals ,Mice ,Transgenic ,Humans ,Mice ,Reactive Oxygen Species ,Isothiocyanates ,Bilirubin ,Glucuronosyltransferase ,Receptors ,Cytoplasmic and Nuclear ,Gene Expression Regulation ,Enzymologic ,Oxidative Stress ,NF-E2-Related Factor 2 - Abstract
Isothiocyanates, such as phenethyl isothiocyanate (PEITC), are formed following the consumption of cruciferous vegetables and generate reactive oxygen species (ROS) that lead to the induction of cytoprotective genes such as the UDP-glucuronosyltransferases (UGTs). The induction of ROS activates the Nrf2-Keap 1 pathway leading to the induction of genes through antioxidant response elements (AREs). UGT1A1, the sole enzyme responsible for the metabolism of bilirubin, can be induced following activation of Nrf2. When neonatal humanized UGT1 (hUGT1) mice, which exhibit severe levels of total serum bilirubin (TSB) because of a developmental delay in expression of the UGT1A1 gene, were treated with PEITC, TSB levels were reduced. Liver and intestinal UGT1A1 were induced, along with murine CYP2B10, a consensus CAR target gene. In both neonatal and adult hUGT1/Car-/- mice, PEITC was unable to induce CYP2B10. A similar result was observed following analysis of UGT1A1 expression in liver. However, TSB levels were still reduced in hUGT1/Car-/- neonatal mice because of ROS induction of intestinal UGT1A1. When oxidative stress was blocked by exposing mice to N-acetylcysteine, induction of liver UGT1A1 and CYP2B10 by PEITC was prevented. Thus, new findings in this report link an important role in CAR activation that is dependent upon oxidative stress.
- Published
- 2017
42. Intestinal NCoR1, a regulator of epithelial cell maturation, controls neonatal hyperbilirubinemia
- Author
-
Chen, Shujuan, Lu, Wenqi, Yueh, Mei-Fei, Rettenmeier, Eva, Liu, Miao, Paszek, Miles, Auwerx, Johan, Yu, Ruth T, Evans, Ronald M, Wang, Kepeng, Karin, Michael, and Tukey, Robert H
- Subjects
Liver Disease ,Digestive Diseases ,Perinatal Period - Conditions Originating in Perinatal Period ,Pediatric ,1.1 Normal biological development and functioning ,Underpinning research ,2.1 Biological and endogenous factors ,Aetiology ,Animals ,Animals ,Newborn ,Bilirubin ,Epithelial Cells ,Glucuronosyltransferase ,Humans ,Hyperbilirubinemia ,Neonatal ,I-kappa B Kinase ,Intestinal Mucosa ,Liver ,Mice ,Nuclear Receptor Co-Repressor 1 ,humanized UGT1 mice ,UDP-glucuronosyltransferase 1A1 ,IKK beta ,kernicterus ,encephalopathy ,IKKβ - Abstract
Severe neonatal hyperbilirubinemia (SNH) and the onset of bilirubin encephalopathy and kernicterus result in part from delayed expression of UDP-glucuronosyltransferase 1A1 (UGT1A1) and the inability to metabolize bilirubin. Although there is a good understanding of the early events after birth that lead to the rapid increase in serum bilirubin, the events that control delayed expression of UGT1A1 during development remain a mystery. Humanized UGT1 (hUGT1) mice develop SNH spontaneously, which is linked to repression of both liver and intestinal UGT1A1. In this study, we report that deletion of intestinal nuclear receptor corepressor 1 (NCoR1) completely diminishes hyperbilirubinemia in hUGT1 neonates because of intestinal UGT1A1 gene derepression. Transcriptomic studies and immunohistochemistry analysis demonstrate that NCoR1 plays a major role in repressing developmental maturation of the intestines. Derepression is marked by accelerated metabolic and oxidative phosphorylation, drug metabolism, fatty acid metabolism, and intestinal maturation, events that are controlled predominantly by H3K27 acetylation. The control of NCoR1 function and derepression is linked to IKKβ function, as validated in hUGT1 mice with targeted deletion of intestinal IKKβ. Physiological events during neonatal development that target activation of an IKKβ/NCoR1 loop in intestinal epithelial cells lead to derepression of genes involved in intestinal maturation and bilirubin detoxification. These findings provide a mechanism of NCoR1 in intestinal homeostasis during development and provide a key link to those events that control developmental repression of UGT1A1 and hyperbilirubinemia.
- Published
- 2017
43. Klisze pamięci. Labirynty Mariana Kołodzieja w Centrum św. Maksymiliana w Harmężach i anonimowe szkice przechowywane w zasobach Muzeum Gross-Rosen jako dokumenty czasu zagłady
- Author
-
Lucyna Sadzikowska and Aleksandra Giełdoń-Paszek
- Subjects
Klisze pamięci. Labirynty ,Marian Kołodziej ,Centrum św. Maksymiliana w Harmężach ,anonimowe szkice ,Muzeum Gross-Rosen w Rogoźnicy ,działalność artystyczna więźniów obozu ,Bibliography. Library science. Information resources ,Christianity ,BR1-1725 - Abstract
W dolnej kondygnacji kościoła Matki Bożej Niepokalanej w Harmężach, wchodzącego w skład Centrum św. Maksymiliana, zainstalowana została ekspozycja zatytułowana Klisze pamięci. Labirynty. Jest to wystawa rysunków Mariana Kołodzieja, byłego więźnia KL Auschwitz. W Archiwum Muzeum Gross-Rosen przechowywany jest zbiór szkiców anonimowego twórcy, najprawdopodobniej więźnia obozu koncentracyjnego, dotychczas niepublikowany w oryginalnej formie z aparatem naukowym. Autorki artykułu zestawiają poszczególne kompozycje rysunkowe M. Kołodzieja oraz anonimowe rysunki zachowane w archiwum Muzeum Gross-Rosen. Uwypuklając niezaprzeczalną wartość artystyczną rysunków, podkreślono ich wartość jako świadectwa. Zarówno Klisze pamięci. Labirynty, jak i poddane analizie rysunki z Gross-Rosen, które Henryk Motowilczuk przekazał w 2007 roku Archiwum Muzeum Gross-Rosen w Rogoźnicy (sygn. 11022/DP), mają wartość dokumentu i wzbogacają studia drugowojenne. Podstawą artykułu, w którym zastosowano metodę case study, stało się siedem kompozycji sytuacyjnych, narysowanych po dwie, cztery i pojedyncza na trzech kartkach papieru pakunkowego, a także ekspozycja rysunków M. Kołodzieja, więźnia oznaczonego numerem 432. Tekst jest próbą syntetycznego przedstawienia z perspektywy historyka sztuki i literaturoznawcy świadectw – kompozycji rysunków stworzonej po bez mała pięćdziesięciu latach milczenia na temat przeżyć lagrowych M. Kołodzieja oraz dokumentu życia obozowego ujętego z perspektywy indywidualnej, odnalezionego za ramą obrazu po prawie sześćdziesięciu latach od wyzwolenia lagru. Artykuł porusza zagadnienie związane z kwestią analogiczności rysunku do rzeczywistości, a także dotyka istoty każdego szkicu z osobna i nakreśla podejmowane przez rysownika strategie.
- Published
- 2022
- Full Text
- View/download PDF
44. Two oncomiRs, miR-182-5p and miR-103a-3p, Involved in Intravenous Leiomyomatosis
- Author
-
Edyta Barnaś, Joanna Ewa Skręt-Magierło, Sylwia Paszek, Ewa Kaznowska, Natalia Potocka, Andrzej Skręt, Agata Sakowicz, and Izabela Zawlik
- Subjects
intravenous leiomyomatosis ,epigenetic factors ,oncomiRs ,miR-182-5p ,miR-103a-3p ,Genetics ,QH426-470 - Abstract
Leiomyomas, also referred to as fibroids, belong to the most common type of benign tumors developing in the myometrium of the uterus. Intravenous leiomyomatosis (IVL) tends to be regarded as a rare type of uterine leiomyoma. IVL tumors are characterized by muscle cell masses developing within the uterine and extrauterine venous system. The underlying mechanism responsible for the proliferation of these lesions is still unknown. The aim of the study was to investigate the expression of the two epigenetic factors, oncomiRs miR-182-5p and miR-103a-3p, in intravenous leiomyomatosis. This study was divided into two stages: initially, miR-182-5p and miR-103a-3p expression was assessed in samples coming from intravenous leiomyomatosis localized in myometrium (group I, n = 6), intravenous leiomyomatosis beyond the uterus (group II; n = 5), and the control group, i.e., intramural leiomyomas (group III; n = 9). The expression level of miR-182-5p was significantly higher in samples coming from intravenous leiomyomatosis (group I and group II) as compared to the control group (p = 0.029 and p = 0.024, respectively). In the second part of the study, the expression levels of the studied oncomiRs were compared between seven samples delivered from one woman during a four-year observation. The long-term follow-up of one patient demonstrated significantly elevated levels of both studied oncomiRs in intravenous leiomyomatosis in comparison to intramural leiomyoma samples.
- Published
- 2023
- Full Text
- View/download PDF
45. A Comprehensive Review of Power System Stabilizers
- Author
-
Adrian Nocoń and Stefan Paszek
- Subjects
power systems ,power system stabilizers ,optimization ,Technology - Abstract
This paper presents a current literature review (from the years 2017–2022) on issues related to the application of power system stabilizers (PSSs) for damping electromechanical swings in power systems (PSs). After the initial selection of papers found in the databases used, over 600 publications were qualified for this review, of which 216 were subjected to detailed analysis. In the review, issues related to the following problems are described: applications of classic PSSs, applications of new stabilizer structures based on new algorithms (including artificial intelligence), development of new methods for tuning PSSs, and operation of PSSs in PSs with high power generation by renewable sources. Describing individual papers, the research methods used by the authors (simulations, measurement methods, and a combination of both) are specified, attention is paid to the waveforms presented in the papers, and reference is made to the types of PSs in which PSSs (large multimachine, reflecting real systems, smaller standard multimachine New-England type, and simplest single-machine) operate. The tables contain detailed comments on the selected papers. The final part of the review presents general comments on the analyzed papers and guidelines for future PS stability studies.
- Published
- 2023
- Full Text
- View/download PDF
46. An Assessment of Serum Selenium Concentration in Women with Ovarian Cancer
- Author
-
Marek Kluza, Sylwia Paszek, Katarzyna Kluza, Sławomir Januszek, Natalia Potocka, Marzena Skrzypa, Alina Zuchowska, Andrzej Wróbel, Piotr Baszuk, Wojciech Marciniak, Marcin Misiek, Jan Lubiński, Jacek Gronwald, Izabela Zawlik, and Tomasz Kluz
- Subjects
ovarian cancer ,selenium ,serum selenium level ,micronutrients ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Background: Available studies on the effect of serum selenium levels on the risk of malignancies show some conflicting results. In this study, we investigated the correlation between serum selenium levels and ovarian cancer occurrence. Methods: 314 women (157 diseased patients and 157 healthy ones) matched in terms of age and BMI were included in the study. The measurements of selenium in the collected blood samples were performed using an ICP mass spectrometer. Univariable and multivariable analyzes were performed to determine the relationship between the factors under the study and the occurrence of ovarian cancer. Results: The mean concentration of selenium was lower among diseased ones than among controls (53.31 μg/L vs. 78.99 μg/L). A decrease in selenium concentration was noticed with the advancement of ovarian cancer. In univariable and multivariable analyzes, a clear relationship between low selenium concentration and the occurrence of ovarian cancer was found (35.3 (95% CI: 11.2–111; p < 0.001) and 45.8 (95% CI: 12.8–164; p < 0.001)). Conclusion: The studied patients with ovarian cancer are characterized by statistically significant lower serum selenium levels than patients from the control group. Among the study group, a decrease in selenium concentration was observed with an increase in the FIGO stage. The determination of the role of selenium as a prophylactic factor in ovarian cancer requires further prospective studies.
- Published
- 2023
- Full Text
- View/download PDF
47. A method of `speed coefficients' for biochemical model reduction applied to the NF-kappaB system
- Author
-
West, Simon, Bridge, Lloyd J., White, Michael R. H., Paszek, Pawel, and Biktashev, Vadim N.
- Subjects
Quantitative Biology - Molecular Networks ,Mathematics - Dynamical Systems - Abstract
The relationship between components of biochemical network and the resulting dynamics of the overall system is a key focus of computational biology. However, as these networks and resulting mathematical models are inherently complex and non-linear, the understanding of this relationship becomes challenging. Among many approaches, model reduction methods provide an avenue to extract components responsible for the key dynamical features of the system. Unfortunately, these approaches often require intuition to apply. In this manuscript we propose a practical algorithm for the reduction of biochemical reaction systems using fast-slow asymptotics. This method allows the ranking of system variables according to how quickly they approach their momentary steady state, thus selecting the fastest for a steady state approximation. We applied this method to derive models of the Nuclear Factor kappa B network, a key regulator of the immune response that exhibits oscillatory dynamics. Analyses with respect to two specific solutions, which corresponded to different experimental conditions identified different components of the system that were responsible for the respective dynamics. This is an important demonstration of how reduction methods that provide approximations around a specific steady state, could be utilised in order to gain a better understanding of network topology in a broader context., Comment: 29 pages, 13 figures, as accepted to J Math Biol 2014/03/06
- Published
- 2014
- Full Text
- View/download PDF
48. The influence of the data packet size on positioning parameters of UWB system for the purpose of tagging smart city infrastructure
- Author
-
K. Hanzel, K. Paszek, and D. Grzechca
- Subjects
uwb ,positioning ,v2i ,smart city ,infrastructure ,Technology ,Technology (General) ,T1-995 - Abstract
The paper presents a concept of the vehicle/road infrastructure in vehicle-to-infrastructure (V2I) communication for tagging and informing vehicles about the surrounded environment. A frame analysis and the influence of the data packet size on Ultra-wideband (UWB) were investigated. The authors have determined the distance that could be traveled by a vehicle at the given speed in relation to the amount of data that has to be transmitted during the ranging procedure. The authors propose a data frame format (using the IEEE 802.15.4a protocol) for coding/encoding the information about the road infrastructure efficiently during the positioning procedure. It affects to minimum the time that is required to exchange messages during the ranging and communication process. The whole system is an efficient and reliable element that enhances/extends the existing components of advanced driver-assistance systems (ADAS), which will facilitate validation of the information obtained from devices such as lidar, radar or video. The impact of the transmitted payload to the distance traveled by car opens the door to future research on the possibility of implementing efficient vehicle-to-vehicle (V2V) communication for autonomous driving or and other smart city solutions.
- Published
- 2020
- Full Text
- View/download PDF
49. Location of generating units most affecting the angular stability of the power system based on the analysis of instantaneous power waveforms
- Author
-
Piotr, Pruski and Stefan, Paszek
- Subjects
power system ,modal analysis ,electromechanical eigenvalues ,transient states ,angular stability ,Information technology ,T58.5-58.64 ,Mathematics ,QA1-939 - Abstract
In the paper, the results of investigations on the location of generating units most affecting the angular stability of a large power system (PS) are presented. For their location, the eigenvalues of the PS model state matrix associated with electromechanical phenomena (electromechanical eigenvalues) were used. The eigenvalues were calculated on the basis of the analysis of the disturbance waveforms of instantaneous power of the generating units operating in the PS. The used method of calculating eigenvalues consists in approximation of the disturbance waveforms of generating units by the waveforms being the superposition of modal components. The parameters of these components depend on the sought eigenvalues and their participation factors. The objective function was defined as the mean square error between the approximated and approximating waveforms. To minimize it, a hybrid algorithm, being a combination of genetic and gradient algorithms, was used. In the instantaneous power waveforms of generating units most affecting the PS angular stability, the least damped or undamped modal components dominate. They are related to eigenvalues with the largest values of real parts. The impact of individual modal components on the disturbance waveforms of subsequent generating units was determined with the use of participation factors and correlation coefficients of electromechanical eigenvalues.
- Published
- 2020
- Full Text
- View/download PDF
50. NCoR1 Protects Mice From Dextran Sodium Sulfate–Induced Colitis by Guarding Colonic Crypt Cells From Luminal InsultSummary
- Author
-
Elvira Mennillo, Xiaojing Yang, Miles Paszek, Johan Auwerx, Christopher Benner, and Shujuan Chen
- Subjects
NCoR1 ,Ulcerative Colitis ,Colonic Crypt Cell ,Butyrate ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background & Aims: Colonic stem cells are essential for producing the mucosal lining, which in turn protects stem cells from insult by luminal factors. Discovery of genetic and biochemical events that control stem cell proliferation and differentiation can be leveraged to decipher the causal factors of ulcerative colitis and aid the development of more effective therapy. Methods: We performed in vivo and in vitro studies from control (nuclear receptor corepressor 1 [NCoR1F/F]) and intestinal epithelial cell–specific NCoR1-deficient mice (NCoR1ΔIEC). Mice were challenged with dextran sodium sulfate to induce experimental ulcerative colitis, followed by colitis examination, barrier permeability analysis, cell proliferation immunostaining assays, and RNA sequencing analysis. By using crypt cultures, the organoid-forming efficiency, cell proliferation, apoptosis, and histone acetylation were analyzed after butyrate and/or tumor necrosis factor α treatments. Results: NCoR1ΔIEC mice showed a dramatic increase in disease severity in this colitis model, with suppression of proliferative cells at the crypt base as an early event and a concomitant increase in barrier permeability. Genome expression patterns showed an important role for NCoR1 in colonic stem cell proliferation and secretory cell differentiation. Colonic organoids cultured from NCoR1ΔIEC mice were more sensitive to butyrate-induced cell growth inhibition and apoptosis, which were exaggerated further by tumor necrosis factor α co-treatment, which was accompanied by increased histone acetylation. Conclusions: NCoR1 regulates colonic stem cell proliferation and secretory cell differentiation. When NCoR1 is disrupted, barrier protection is weakened, allowing luminal products such as butyrate to penetrate and synergistically damage the colonic crypt cells. Transcript profiling: RNA sequencing data have been deposited in the GEO database, accession number: GSE136153.
- Published
- 2020
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.