30 results on '"Parquet C"'
Search Results
2. LORD MINTO AUX INDES
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Du Parquet, C.
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- 1880
3. LES MÉMOIRES DE GREVILLE
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Du Parquet, C. and DU PARQUET
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- 1875
4. Revised interpretation of the sequence containing the murE gene encoding the UDP-N-acetylmuramyl-tripeptide synthetase of Escherichia coli
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Michaud, C, primary, Parquet, C, additional, Flouret, B, additional, Blanot, D, additional, and van Heijenoort, J, additional
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- 1990
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5. ASAP 5 - Low-Cost Access to Space for Auxiliary Payloads
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Balaam, P., Maroquene, F., and Parquet, C. A. du
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- 2000
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6. Formation of adenosine 5'-tetraphosphate from the acyl phosphate intermediate: a difference between the MurC and MurD synthetases of Escherichia coli
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Bouhss, A., Dementin, S., Heijenoort, J. van, Parquet, C., and Blanot, D.
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- 1999
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7. Site-directed mutagenesis and chemical modification of the two cysteine residues of the UDP-N-acetylmuramoyl:l-alanine ligase of Escherichia coli
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Nosal, F., Masson, A., Legrand, R., Blanot, D., Schoot, B., Heijenoort, J. Van, and Parquet, C.
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- 1998
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8. Organization of the murE-murG region of Escherichia coli: identification of the murD gene encoding the D-glutamic-acid-adding enzyme
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Mengin-Lecreulx, D, Parquet, C, Desviat, L R, Plá, J, Flouret, B, Ayala, J A, and van Heijenoort, J
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The 2-min region of the Escherichia coli genome contains a large cluster of genes from pbpB to envA that code for proteins involved in peptidoglycan biosynthesis and cell division. From pLC26-6 of the collection of Clarke and Carbon (L. Clarke and J. Carbon, Cell 9:91-99, 1976) plasmids carrying different fragments from the 8-kilobase-pair region downstream of pbpB were constructed and analyzed for their ability to direct protein synthesis in maxicells, to complement various thermosensitive mutations, and to overproduce enzymatic activities. We report the localization of the previously unidentified murD gene coding for the D-glutamic acid-adding enzyme within this region. Our data show that the genes are in the order pbpB-murE-murF-X-murD-Y-murG, where X and Y represent chromosomal fragments from 1 to 1.5 kilobase pairs, possibly coding for unknown proteins. Furthermore, the murE and murF genes, encoding the meso-diaminopimelic acid and D-alanyl-D-alanine-adding enzymes, respectively, may be translationally coupled when transcription is initiated upstream of murE, within the preceding structural gene pbpB coding for penicillin-binding protein 3.
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- 1989
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9. Luminescence of the tryptophan and tyrosine residues of trypsin
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Arrio, B., primary, Hill, M., additional, and Parquet, C., additional
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- 1973
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10. Un nouveau colorant fluorescent pour la mesure du temps de relaxation brownienne des proteines
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Rodier, F., primary, Hill, M., additional, Arrio, B., additional, and Parquet, C., additional
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- 1970
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11. [Screening and healthcare for pregnant women with psycho-social vulnerability : A French national study].
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Haab E, Werschuren C, Parquet C, Sauvegrain P, Blanc J, Crenn-Hebert C, Fresson J, Gelly M, Gillard P, Gonnaud F, Vigoureux S, Ibanez G, Ngo C, Regnault N, Deneux-Tharaux C, and Azria E
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- Delivery of Health Care, Female, Hospitals, Maternity, Humans, Mass Screening, Pregnancy, Pregnant Women, Social Vulnerability
- Abstract
Introduction: Psycho-social vulnerabilities are a medical risk factor for both fetus and mother. Association between socioeconomic status and prenatal follow-up has been well established and inadequate follow-up is associated with higher morbidity and mortality in women in unfavorable situations., Objective: The objective is to identify screening strategies and to describe existing systems for pregnant women in psycho-social vulnerability in French maternity hospitals., Material and Methodes: This is a national survey conducted by questionnaire in all French maternities., Results: Screening by means of targeted questions is carried out by 96.7% of maternity units. Early prenatal interviews are offered systematically by 64% of maternity units and access to them is still difficult for women in vulnerable situations. In order to organize care pathways, 28.7% of maternities have a structured unit within their establishment and 81% state that they have mobilizable caregivers. Multidisciplinary meetings for the coordination of the various stakeholders are held by 85.8% of maternity units. Collaboration with networks and associations is emphasized., Conclusion: A large proportion of maternities seek to identify women in situation of psycho-social vulnerabilities and to organize care paths. However, the resources implemented still appear insufficient for many maternity units. Each maternity hospital has resources and is developing initiatives to deal with the difficulties of care., (Copyright © 2022 Elsevier Masson SAS. All rights reserved.)
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- 2022
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12. Heart failure due to primary hypothyroidism. Case report and review
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Curotto-Grasiosi J, Parquet C, Peressotti B, Colombo-Viña N, Riccelli S, Cordero D, and Machado R
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- Female, Humans, Middle Aged, Thyroid Hormones, Cardiomyopathy, Dilated, Heart Failure diagnosis, Heart Failure etiology, Hypothyroidism complications, Hypothyroidism diagnosis
- Abstract
Background: There are well-recognized relationships between thyroid hormones, heart and peripheral vascular system. Thyroid hormones have relevant actions on the heart and circulation, generate multiple effects including hemodynamic changes and exert mediated effects on cardiac cells through gene expression., Clinical Case: We present a 64-year-old woman with diagnosis of dilated cardiomyopathy with reduced ejection fraction, in whom coronary disease was thought of as the most probable etiology by clinical antecedents but in the evolution, other possible etiologies were to appear., Conclusions: Numerous complementary diagnostic studies were carried out, such as cinecoronariography, cardiac nuclear magnetic resonance imaging, laboratory analysis, to name a few, and it was concluded that the etiological cause was due to primary hypothyroidism., (Copyright: © 2020 Revista Medica del Instituto Mexicano del Seguro Social.)
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- 2020
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13. The elucidation of the structure of Thermotoga maritima peptidoglycan reveals two novel types of cross-link.
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Boniface A, Parquet C, Arthur M, Mengin-Lecreulx D, and Blanot D
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- Alanine chemistry, Cell Wall metabolism, Chromatography, High Pressure Liquid methods, Disaccharides chemistry, Endopeptidases chemistry, Lysine chemistry, Mass Spectrometry methods, Models, Chemical, Peptides chemistry, Polymers chemistry, Polysaccharides chemistry, Time Factors, Cross-Linking Reagents pharmacology, Peptidoglycan chemistry, Thermotoga maritima metabolism
- Abstract
Thermotoga maritima is a Gram-negative, hyperthermophilic bacterium whose peptidoglycan contains comparable amounts of L- and D-lysine. We have determined the fine structure of this cell-wall polymer. The muropeptides resulting from the digestion of peptidoglycan by mutanolysin were separated by high-performance liquid chromatography and identified by amino acid analysis after acid hydrolysis, dinitrophenylation, enzymatic determination of the configuration of the chiral amino acids, and mass spectrometry. The high-performance liquid chromatography profile contained four main peaks, two monomers, and two dimers, plus a few minor peaks corresponding to anhydro forms. The first monomer was the d-lysine-containing disaccharide-tripeptide in which the D-Glu-D-Lys bond had the unusual gamma-->epsilon arrangement (GlcNAc-MurNAc-L-Ala-gamma-D-Glu-epsilon-D-Lys). The second monomer was the conventional disaccharide-tetrapeptide (GlcNAc-MurNAc-L-Ala-gamma-D-Glu-L-Lys-D-Ala). The first dimer contained a disaccharide-L-Ala as the acyl donor cross-linked to the alpha-amine of D-Lys in a tripeptide acceptor stem with the sequence of the first monomer. In the second dimer, donor and acceptor stems with the sequences of the second and first monomers, respectively, were connected by a D-Ala4-alpha-D-Lys3 cross-link. The cross-linking index was 10 with an average chain length of 30 disaccharide units. The structure of the peptidoglycan of T. maritima revealed for the first time the key role of D-Lys in peptidoglycan synthesis, both as a surrogate of L-Lys or meso-diaminopimelic acid at the third position of peptide stems and in the formation of novel cross-links of the L-Ala1(alpha-->alpha)D-Lys3 and D-Ala4(alpha-->alpha)D-Lys3 types.
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- 2009
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14. Substrate-induced inactivation of the Escherichia coli AmiD N-acetylmuramoyl-L-alanine amidase highlights a new strategy to inhibit this class of enzyme.
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Pennartz A, Généreux C, Parquet C, Mengin-Lecreulx D, and Joris B
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- Chromatography, High Pressure Liquid, Escherichia coli Proteins genetics, Kinetics, N-Acetylmuramoyl-L-alanine Amidase genetics, Peptidoglycan metabolism, Substrate Specificity, Escherichia coli enzymology, Escherichia coli Proteins metabolism, N-Acetylmuramoyl-L-alanine Amidase metabolism
- Abstract
In the eubacterial cell, the peptidoglycan is perpetually hydrolyzed throughout the cell cycle by different enzymes such as lytic transglycosylases, endopeptidases, and amidases. In Escherichia coli, four N-acetylmuramoyl-l-alanine amidases, AmiA, -B, -C, and -D, are present in the periplasm. AmiA, -B, and -C are soluble enzymes, whereas AmiD is a lipoprotein anchored in the outer membrane. To determine more precisely the specificity and the kinetic parameters of AmiD, we overproduced and purified the native His-tagged AmiD in the presence of detergent and a soluble truncated form of this enzyme by removing its signal peptide and the cysteine residue responsible for its lipidic anchorage. AmiD is a zinc metalloenzyme and is inactivated by a metal chelator such as EDTA. Native His-tagged and truncated AmiD hydrolyzes peptidoglycan fragments that have at least three amino acids in their peptide chains, and the presence of an anhydro function on the N-acetylmuramic acid is not essential for its activity. The soluble truncated AmiD exhibits a biphasic kinetic time course that can be explained by the inactivation of the enzyme by the substrate. This behavior highlights a new strategy to inhibit this class of enzymes.
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- 2009
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15. Active site mapping of MraY, a member of the polyprenyl-phosphate N-acetylhexosamine 1-phosphate transferase superfamily, catalyzing the first membrane step of peptidoglycan biosynthesis.
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Al-Dabbagh B, Henry X, El Ghachi M, Auger G, Blanot D, Parquet C, Mengin-Lecreulx D, and Bouhss A
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- Amino Acid Sequence, Bacillus subtilis enzymology, Bacillus subtilis genetics, Bacterial Proteins chemistry, Bacterial Proteins genetics, Binding Sites, Enzyme Activation drug effects, Genetic Complementation Test, Hydrogen-Ion Concentration, Magnesium Chloride pharmacology, Models, Biological, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Transferases chemistry, Transferases genetics, Transferases (Other Substituted Phosphate Groups) chemistry, Transferases (Other Substituted Phosphate Groups) genetics, Transformation, Genetic, Bacillus subtilis metabolism, Bacterial Proteins metabolism, Peptidoglycan biosynthesis, Transferases metabolism, Transferases (Other Substituted Phosphate Groups) metabolism
- Abstract
The MraY transferase is an integral membrane protein that catalyzes an essential step of peptidoglycan biosynthesis, namely the transfer of the phospho-N-acetylmuramoyl-pentapeptide motif onto the undecaprenyl phosphate carrier lipid. It belongs to a large superfamily of eukaryotic and prokaryotic prenyl sugar transferases. No 3D structure has been reported for any member of this superfamily, and to date MraY is the only protein that has been successfully purified to homogeneity. Nineteen polar residues located in the five cytoplasmic segments of MraY appeared as invariants in the sequences of MraY orthologues. A certain number of these invariant residues were found to be conserved in the whole superfamily. To assess the importance of these residues in the catalytic process, site-directed mutagenesis was performed using the Bacillus subtilis MraY as a model. Fourteen residues were shown to be essential for MraY activity by an in vivo functional complementation assay using a constructed conditional mraY mutant strain. The corresponding mutant proteins were purified and biochemically characterized. None of these mutations did significantly affect the binding of the nucleotidic and lipidic substrates, but the k cat was dramatically reduced in almost all cases. The important residues for activity therefore appeared to be distributed in all the cytoplasmic segments, indicating that these five regions contribute to the structure of the catalytic site. Our data show that the D98 residue that is invariant in the whole superfamily should be involved in the deprotonation of the lipid substrate during the catalytic process.
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- 2008
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16. Phage T5 straight tail fiber is a multifunctional protein acting as a tape measure and carrying fusogenic and muralytic activities.
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Boulanger P, Jacquot P, Plançon L, Chami M, Engel A, Parquet C, Herbeuval C, and Letellier L
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- Amino Acid Sequence, Computational Biology methods, DNA, Viral chemistry, Hydrolysis, Microscopy, Electron, Molecular Sequence Data, Peptides chemistry, Polysaccharides chemistry, Protein Conformation, Protein Structure, Tertiary, Sucrose chemistry, Time Factors, Viral Tail Proteins physiology, Bacteriophages chemistry, Viral Proteins chemistry, Viral Tail Proteins chemistry
- Abstract
We report a bioinformatic and functional characterization of Pb2, a 121-kDa multimeric protein that forms phage T5 straight fiber and is implicated in DNA transfer into the host. Pb2 was predicted to consist of three domains. Region I (residues 1-1030) was mainly organized in coiled coil and shared features of tape measure proteins. Region II (residues 1030-1076) contained two alpha-helical transmembrane segments. Region III (residues 1135-1148) included a metallopeptidase motif. A truncated version of Pb2 (Pb2-Cterm, residues 964-1148) was expressed and purified. Pb2-Cterm shared common features with fusogenic membrane polypeptides. It formed oligomeric structures and inserted into liposomes triggering their fusion. Pb2-Cterm caused beta-galactosidase release from Escherichia coli cells and in vitro peptidoglycan hydrolysis. Based on these multifunctional properties, we propose that binding of phage T5 to its receptor triggers large conformational changes in Pb2. The coiled coil region would serve as a sensor for triggering the opening of the head-tail connector. The C-terminal region would gain access to the host envelope, permitting the local degradation of the peptidoglycan and the formation of the DNA pore by fusion of the two membranes.
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- 2008
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17. Peptidoglycan molecular requirements allowing detection by the Drosophila immune deficiency pathway.
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Stenbak CR, Ryu JH, Leulier F, Pili-Floury S, Parquet C, Hervé M, Chaput C, Boneca IG, Lee WJ, Lemaitre B, and Mengin-Lecreulx D
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- Animals, Anti-Bacterial Agents biosynthesis, Carbohydrate Sequence, Carrier Proteins chemistry, Cell Line, Cytotoxins immunology, Cytotoxins metabolism, Diaminopimelic Acid analogs & derivatives, Diaminopimelic Acid chemistry, Diaminopimelic Acid immunology, Down-Regulation immunology, Drosophila Proteins immunology, Drosophila Proteins metabolism, Drosophila melanogaster metabolism, Immunity, Innate, Insect Proteins biosynthesis, Insect Proteins genetics, Lysine chemistry, Molecular Sequence Data, Muramidase pharmacology, Peptidoglycan chemistry, Peptidoglycan metabolism, Signal Transduction genetics, Virulence Factors, Bordetella chemistry, Virulence Factors, Bordetella immunology, Virulence Factors, Bordetella metabolism, Carrier Proteins immunology, Carrier Proteins metabolism, Drosophila melanogaster immunology, Peptidoglycan immunology, Signal Transduction immunology
- Abstract
Innate immune recognition of microbes is a complex process that can be influenced by both the host and the microbe. Drosophila uses two distinct immune signaling pathways, the Toll and immune deficiency (Imd) pathways, to respond to different classes of microbes. The Toll pathway is predominantly activated by Gram-positive bacteria and fungi, while the Imd pathway is primarily activated by Gram-negative bacteria. Recent work has suggested that this differential activation is achieved through peptidoglycan recognition protein (PGRP)-mediated recognition of specific forms of peptidoglycan (PG). In this study, we have further analyzed the specific PG molecular requirements for Imd activation through the pattern recognition receptor PGRP-LC in both cultured cell line and in flies. We found that two signatures of Gram-negative PG, the presence of diaminopimelic acid in the peptide bridge and a 1,6-anhydro form of N-acetylmuramic acid in the glycan chain, allow discrimination between Gram-negative and Gram-positive bacteria. Our results also point to a role for PG oligomerization in Imd activation, and we demonstrate that elements of both the sugar backbone and the peptide bridge of PG are required for optimum recognition. Altogether, these results indicate multiple requirements for efficient PG-mediated activation of the Imd pathway and demonstrate that PG is a complex immune elicitor.
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- 2004
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18. A Drosophila pattern recognition receptor contains a peptidoglycan docking groove and unusual L,D-carboxypeptidase activity.
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Chang CI, Pili-Floury S, Hervé M, Parquet C, Chelliah Y, Lemaitre B, Mengin-Lecreulx D, and Deisenhofer J
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- Amino Acid Sequence, Animals, Binding Sites, Chromatography, High Pressure Liquid, Crosses, Genetic, Crystallography, X-Ray, DNA Mutational Analysis, Drosophila Proteins metabolism, Drosophila melanogaster, Hydrolysis, Lysine chemistry, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Mutation, Protein Binding, Protein Conformation, Protein Structure, Secondary, Recombinant Proteins chemistry, Reverse Transcriptase Polymerase Chain Reaction, Sequence Homology, Amino Acid, Toll-Like Receptors metabolism, Tyrosine chemistry, Carboxypeptidases chemistry, Carrier Proteins chemistry, Peptidoglycan chemistry
- Abstract
The Drosophila peptidoglycan recognition protein SA (PGRP-SA) is critically involved in sensing bacterial infection and activating the Toll signaling pathway, which induces the expression of specific antimicrobial peptide genes. We have determined the crystal structure of PGRP-SA to 2.2-A resolution and analyzed its peptidoglycan (PG) recognition and signaling activities. We found an extended surface groove in the structure of PGRP-SA, lined with residues that are highly diverse among different PGRPs. Mutational analysis identified it as a PG docking groove required for Toll signaling and showed that residue Ser158 is essential for both PG binding and Toll activation. Contrary to the general belief that PGRP-SA has lost enzyme function and serves primarily for PG sensing, we found that it possesses an intrinsic L,D-carboxypeptidase activity for diaminopimelic acid-type tetrapeptide PG fragments but not lysine-type PG fragments, and that Ser158 and His42 may participate in the hydrolytic activity. As L,D-configured peptide bonds exist only in prokaryotes, this work reveals a rare enzymatic activity in a eukaryotic protein known for sensing bacteria and provides a possible explanation of how PGRP-SA mediates Toll activation specifically in response to lysine-type PG., Competing Interests: The authors have declared that no conflicts of interest exist.
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- 2004
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19. The Drosophila immune system detects bacteria through specific peptidoglycan recognition.
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Leulier F, Parquet C, Pili-Floury S, Ryu JH, Caroff M, Lee WJ, Mengin-Lecreulx D, and Lemaitre B
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- Animals, Animals, Genetically Modified, Bacillus thuringiensis immunology, Base Sequence, DNA genetics, Drosophila genetics, Drosophila microbiology, Drosophila Proteins genetics, Drosophila Proteins metabolism, Escherichia coli immunology, Gene Expression, Genes, Insect, Insect Proteins genetics, Lac Operon, Muramidase, Pseudomonas aeruginosa immunology, Receptors, Cell Surface genetics, Receptors, Cell Surface metabolism, Signal Transduction, Toll-Like Receptors, Drosophila immunology, Gram-Negative Bacteria immunology, Gram-Positive Bacteria immunology, Peptidoglycan immunology
- Abstract
The Drosophila immune system discriminates between different classes of infectious microbes and responds with pathogen-specific defense reactions through selective activation of the Toll and the immune deficiency (Imd) signaling pathways. The Toll pathway mediates most defenses against Gram-positive bacteria and fungi, whereas the Imd pathway is required to resist infection by Gram-negative bacteria. The bacterial components recognized by these pathways remain to be defined. Here we report that Gram-negative diaminopimelic acid-type peptidoglycan is the most potent inducer of the Imd pathway and that the Toll pathway is predominantly activated by Gram-positive lysine-type peptidoglycan. Thus, the ability of Drosophila to discriminate between Gram-positive and Gram-negative bacteria relies on the recognition of specific forms of peptidoglycan.
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- 2003
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20. MurC and MurD synthetases of peptidoglycan biosynthesis: borohydride trapping of acyl-phosphate intermediates.
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Bouhss A, Dementin S, van Heijenoort J, Parquet C, and Blanot D
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- Bacterial Proteins metabolism, Borohydrides chemistry, Carbon Radioisotopes chemistry, Electrophoresis methods, Molecular Structure, Muramic Acids chemistry, Muramic Acids metabolism, Oxidation-Reduction, Borohydrides metabolism, Peptide Synthases metabolism, Peptidoglycan biosynthesis, Phosphates metabolism
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- 2002
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21. Evidence of a functional requirement for a carbamoylated lysine residue in MurD, MurE and MurF synthetases as established by chemical rescue experiments.
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Dementin S, Bouhss A, Auger G, Parquet C, Mengin-Lecreulx D, Dideberg O, van Heijenoort J, and Blanot D
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- Base Sequence, DNA Primers, Escherichia coli genetics, Kinetics, Magnesium metabolism, Mutagenesis, Site-Directed, Peptide Synthases chemistry, Peptide Synthases genetics, Substrate Specificity, Lysine metabolism, Peptide Synthases metabolism
- Abstract
Enzymes MurD, MurE, MurF, folylpolyglutamate synthetase and cyanophycin synthetase, which belong to the Mur synthetase superfamily, possess an invariant lysine residue (K198 in the Escherichia coli MurD numbering). Crystallographic analysis of MurD and MurE has recently shown that this residue is present as a carbamate derivative, a modification presumably essential for Mg(2+) binding and acyl phosphate formation. In the present work, the importance of the carbamoylated residue was investigated in MurD, MurE and MurF by site-directed mutagenesis and chemical rescue experiments. Mutant proteins MurD K198A/F, MurE K224A and MurF K202A, which displayed low enzymatic activity, were rescued by incubation with short-chain carboxylic acids, but not amines. The best rescuing agent was acetate for MurD K198A, formate for K198F, and propionate for MurE K224A and MurF K202A. In the last of these, wild-type levels of activity were recovered. A complementarity between the volume of the residue replacing lysine and the length of the carbon chain of the acid was noted. These observations support a functional role for the carbamate in the three Mur synthetases. Experiments aimed at recovering an active enzyme by introducing an acidic residue in place of the invariant lysine residue were also undertaken. Mutant protein MurD K198E was weakly active and was rescued by formate, indicating the necessity of correct positioning of the acidic function with respect to the peptide backbone. Attempts at covalent rescue of mutant protein MurD K198C failed because of its lack of reactivity towards haloacids.
- Published
- 2001
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22. Role of the ortholog and paralog amino acid invariants in the active site of the UDP-MurNAc-L-alanine:D-glutamate ligase (MurD).
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Bouhss A, Dementin S, Parquet C, Mengin-Lecreulx D, Bertrand JA, Le Beller D, Dideberg O, van Heijenoort J, and Blanot D
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- Amino Acid Sequence, Binding Sites genetics, Conserved Sequence genetics, Escherichia coli enzymology, Escherichia coli genetics, Kinetics, Models, Molecular, Molecular Sequence Data, Mutagenesis, Site-Directed, Sequence Alignment, Amino Acid Substitution genetics, Amino Acids chemistry, Amino Acids genetics, Peptide Synthases chemistry, Peptide Synthases genetics
- Abstract
To evaluate their role in the active site of the UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase (MurD) from Escherichia coli, 12 residues conserved either in the Mur superfamily [Eveland, S. S., Pompliano, D. L., and Anderson, M. S. (1997) Biochemistry 36, 6223-6229; Bouhss, A., Mengin-Lecreulx, D., Blanot, D., van Heijenoort, J., and Parquet, C. (1997) Biochemistry 36, 11556-11563] or in the sequences of 26 MurD orthologs were submitted to site-directed mutagenesis. All these residues lay within the cleft of the active site of MurD as defined by its 3D structure [Bertrand, J. A., Auger, D., Fanchon, E., Martin, L., Blanot, D., van Heijenoort, J., and Dideberg, O. (1997) EMBO J. 16, 3416-3425]. Fourteen mutant proteins (D35A, K115A, E157A/K, H183A, Y194F, K198A/F, N268A, N271A, H301A, R302A, D317A, and R425A) containing a C-terminal (His)(6) extension were prepared and their steady-state kinetic parameters determined. All had a reduced enzymatic activity, which in many cases was very low, but no mutation led to a total loss of activity. Examination of the specificity constants k(cat)/K(m) for the three MurD substrates indicated that most mutations affected both the binding of one substrate and the catalytic process. These kinetic results correlated with the assigned function of the residues based on the X-ray structures.
- Published
- 1999
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23. Contribution of the Pmra promoter to expression of genes in the Escherichia coli mra cluster of cell envelope biosynthesis and cell division genes.
- Author
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Mengin-Lecreulx D, Ayala J, Bouhss A, van Heijenoort J, Parquet C, and Hara H
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- Cell Membrane metabolism, Escherichia coli enzymology, Escherichia coli metabolism, Genes, Bacterial, Mutation, Peptidoglycan biosynthesis, Transcription, Genetic, Cell Division genetics, Escherichia coli genetics, Gene Expression Regulation, Bacterial genetics, Multigene Family, Promoter Regions, Genetic
- Abstract
Recently, a promoter for the essential gene ftsI, which encodes penicillin-binding protein 3 of Escherichia coli, was precisely localized 1.9 kb upstream from this gene, at the beginning of the mra cluster of cell division and cell envelope biosynthesis genes (H. Hara, S. Yasuda, K. Horiuchi, and J. T. Park, J. Bacteriol. 179:5802-5811, 1997). Disruption of this promoter (Pmra) on the chromosome and its replacement by the lac promoter (Pmra::Plac) led to isopropyl-beta-D-thiogalactopyranoside (IPTG)-dependent cells that lysed in the absence of inducer, a defect which was complemented only when the whole region from Pmra to ftsW, the fifth gene downstream from ftsI, was provided in trans on a plasmid. In the present work, the levels of various proteins involved in peptidoglycan synthesis and cell division were precisely determined in cells in which Pmra::Plac promoter expression was repressed or fully induced. It was confirmed that the Pmra promoter is required for expression of the first nine genes of the mra cluster: mraZ (orfC), mraW (orfB), ftsL (mraR), ftsI, murE, murF, mraY, murD, and ftsW. Interestingly, three- to sixfold-decreased levels of MurG and MurC enzymes were observed in uninduced Pmra::Plac cells. This was correlated with an accumulation of the nucleotide precursors UDP-N-acetylglucosamine and UDP-N-acetylmuramic acid, substrates of these enzymes, and with a depletion of the pool of UDP-N-acetylmuramyl pentapeptide, resulting in decreased cell wall peptidoglycan synthesis. Moreover, the expression of ftsZ, the penultimate gene from this cluster, was significantly reduced when Pmra expression was repressed. It was concluded that the transcription of the genes located downstream from ftsW in the mra cluster, from murG to ftsZ, is also mainly (but not exclusively) dependent on the Pmra promoter.
- Published
- 1998
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24. Invariant amino acids in the Mur peptide synthetases of bacterial peptidoglycan synthesis and their modification by site-directed mutagenesis in the UDP-MurNAc:L-alanine ligase from Escherichia coli.
- Author
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Bouhss A, Mengin-Lecreulx D, Blanot D, van Heijenoort J, and Parquet C
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- Amino Acid Sequence, Molecular Sequence Data, Mutagenesis, Site-Directed, Peptide Synthases genetics, Peptide Synthases metabolism, Protein Binding, Sequence Alignment, Escherichia coli enzymology, Peptide Synthases chemistry
- Abstract
The comparison of the amino acid sequences of 20 cytoplasmic peptidoglycan synthetases (MurC, MurD, MurE, MurF, and Mpl) from various bacterial organisms has allowed us to detect common invariants: seven amino acids and the ATP-binding consensus sequence GXXGKT/S all at the same position in the alignment. The Mur synthetases thus appeared as a well-defined class of closely functionally related proteins. The conservation of a constant backbone length between certain invariants suggested common structural motifs. Among the other enzymes catalyzing a peptide bond formation driven by ATP hydrolysis to ADP and Pi, only folylpoly-gamma-l-glutamate synthetases presented the same common conserved amino acid residues, except for the most N-terminal invariant D50. Site-directed mutageneses were carried out to replace the K130, E174, H199, N293, N296, R327, and D351 residues by alanine in the MurC protein from Escherichia coli taken as model. For this purpose, plasmid pAM1005 was used as template, MurC being highly overproduced in this genetic setting. Analysis of the Vmax values of the mutated proteins suggested that residues K130, E174, and D351 are essential for the catalytic process whereas residues H199, N293, N296, and R327 were not. Mutations K130A, H199A, N293A, N296A, and R327A led to important variations of the Km values for one or more substrates, thereby indicating that these residues are involved in the structure of the active site and suggesting that the binding order of the substrates could be ATP, UDP-MurNAc, and alanine. The various mutated murC plasmids were tested for their effects on the growth, cell morphology, and peptidoglycan cell content of a murC thermosensitive strain at 42 degrees C. The observed effects (complementation, altered morphology, and reduced peptidoglycan content) paralleled more or less the decreased values of the MurC activity of each mutant.
- Published
- 1997
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25. Study of the overproduced uridine-diphosphate-N-acetylmuramate:L-alanine ligase from Escherichia coli.
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Liger D, Masson A, Blanot D, van Heijenoort J, and Parquet C
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- Alanine metabolism, Chromatography, Thin Layer, Escherichia coli genetics, Genes, Bacterial genetics, Kinetics, Peptide Synthases genetics, Plasmids, Substrate Specificity, Escherichia coli enzymology, Peptide Synthases biosynthesis
- Abstract
The UDP-N-acetylmuramate:L-alanine ligase of Escherichia coli is responsible for the addition of the first amino acid of the peptide moiety in the assembly of the monomer unit of peptidoglycan. It catalyzes the formation of the amide bond between UDP-N-acetylmuramic acid (UDP-MurNAc) and L-alanine. The UDP-MurNAc-L-alanine ligase was overproduced 2000-fold in a strain harboring a recombinant plasmid (pAM1005) with the murC gene under the control of the inducible promoter trc. The murC gene product appears as a 50-kDa protein accounting for ca. 50% of total cell proteins. A two-step purification led to 1 g of a homogeneous protein from an 8-liter culture. The N-terminal sequence of the purified protein correlated with the nucleotide sequence of the gene. The stability of the enzymatic activity is strictly dependent on the presence of 2-mercaptoethanol. The K(m) values for substrates UDP-N-acetylmuramic acid, L-alanine, and ATP were estimated; 100, 20, and 450 microM, respectively. The specificity of the enzyme for its substrates was investigated with various analogues. Preliminary experiments attempting to elucidate the enzymatic mechanism were consistent with the formation of an acylphosphate intermediate.
- Published
- 1996
- Full Text
- View/download PDF
26. Over-production, purification and properties of the uridine-diphosphate-N-acetylmuramate:L-alanine ligase from Escherichia coli.
- Author
-
Liger D, Masson A, Blanot D, van Heijenoort J, and Parquet C
- Subjects
- Amino Acid Sequence, Base Sequence, Enzyme Stability, Molecular Sequence Data, Peptide Synthases biosynthesis, Substrate Specificity, Alanine metabolism, Escherichia coli enzymology, Peptide Synthases isolation & purification, Uridine Diphosphate N-Acetylmuramic Acid metabolism
- Abstract
The UDP-N-acetylmuramate:L-alanine ligase of Escherichia coli was over-produced in strains harbouring recombinant plasmids bearing the murC gene under the control of the lac or trc promoter. Plasmid pAM1005, in which the promoter and ribosome-binding site region of murC were removed and in which the gene was directly under the control of promoter trc, led to a 2000-fold amplification of the L-alanine-adding activity after induction by isopropyl-thio-beta-D-galactopyranoside. The murC gene product was visualized as a 50-kDa protein accounting for approximately 50% of the cell protein. A two-step purification led to 1 g of a homogeneous protein from an 18-1 culture. The N-terminal sequence of the purified protein correlated with the nucleotide sequence of the murC gene. The presence of 2-mercaptoethanol and glycerol was essential for the stability of the enzyme. The Km values for UDP-N-acetylmuramic acid, L-alanine and ATP/Mg2+ were estimated at 100, 20 and 450 microM, respectively. Under the optimal in vitro conditions a turnover number of 928 min-1 was calculated and a copy number/cell of 600 could be roughly estimated. The specificity of the enzyme for its substrates was investigated with various analogues. The enzyme also catalysed the reverse reaction.
- Published
- 1995
- Full Text
- View/download PDF
27. Comparative study of some conformational properties of alpha, beta and psi bovine trypsins.
- Author
-
Foucault G, Kellershohn N, Seydoux F, Yon J, Parquet C, and Arrio B
- Subjects
- Animals, Aspartic Acid, Benzamidines pharmacology, Binding, Competitive, Cattle, Hydrogen-Ion Concentration, Kinetics, Lysine, Optical Rotatory Dispersion, Protein Conformation, Serine, Spectrophotometry, Tyrosine, Trypsin
- Published
- 1974
- Full Text
- View/download PDF
28. Envelope-bound N-acetylmuramyl-L-alanine amidase of Escherichia coli K 12. Purification and properties of the enzyme.
- Author
-
van Heijenoort J, Parquet C, Flouret B, and van Heijenoort Y
- Subjects
- Alanine metabolism, Amidohydrolases isolation & purification, Cell Membrane enzymology, Diaminopimelic Acid metabolism, Molecular Weight, Muramic Acids metabolism, Oligopeptides metabolism, Spheroplasts enzymology, Temperature, Amidohydrolases metabolism, Escherichia coli enzymology
- Abstract
N-Acetylmuramyl-L-alanine amidase activity was detected in Escherichia coli K 12 by usine N-acetylmuramyl-L-alanyl-gamma-D-glutamyl-(L)-meso-[3H]diaminopimelic acid as a radioactive substrate. This activity cleaves the amide bond between the residues of N-acetylmuramyl acid and L-alanine. It was readily obtained in a soluble form either by mechanical disruption of the cells or by spheroplast formation. In the latter case the release of most of the activity into the sucrose medium seems to indicate that it is either periplasmic or associated with the outer membrane of the envelope of E. coli K 12. The enzyme was purified to near homogeneity. A molecular weight of 39 000 was determined by gel filtration and confirmed by polyacrylamide gel electrophoresis. Further characterisation of this N-acetylmuramyl-L-alanine amidase activity was carried out by investigating several of its properties.
- Published
- 1975
- Full Text
- View/download PDF
29. Nucleotide sequence of the murF gene encoding the UDP-MurNAc-pentapeptide synthetase of Escherichia coli.
- Author
-
Parquet C, Flouret B, Mengin-Lecreulx D, and van Heijenoort J
- Subjects
- Amino Acid Sequence, Base Sequence, Escherichia coli enzymology, Molecular Sequence Data, Escherichia coli genetics, Genes, Genes, Bacterial, Peptide Synthases genetics
- Published
- 1989
- Full Text
- View/download PDF
30. N-acetylmuramoyl-L-alanine amidase of Escherichia coli K12. Possible physiological functions.
- Author
-
Parquet C, Flouret B, Leduc M, Hirota Y, and van Heijenoort J
- Subjects
- Bacterial Proteins isolation & purification, Escherichia coli genetics, Mutation, N-Acetylmuramoyl-L-alanine Amidase metabolism, Peptidoglycan metabolism, Substrate Specificity, Amidohydrolases isolation & purification, Escherichia coli enzymology, N-Acetylmuramoyl-L-alanine Amidase isolation & purification
- Abstract
Various experiments were carried out in an attempt to determine the possible physiological function of the N-acetylmuramoyl-L-alanine amidase purified from Escherichia coli K12 on the basis of its activity on N-acetylmuramoyl-L-alanyl-D-gamma-glutamyl-meso-diaminopimelic acid [MurNAc-LAla-DGlu(msA2pm)]. A Km value of 0.04 mM was determined with this substrate. Specificity studies revealed that compounds with a MurNAc-LAla linkage are the most probable substrates of this enzyme in vivo. Purified amidase had no effect on purified peptidoglycan and only low levels (1-2.5%) of cleaved MurNAc-LAla linkages were detected in peptidoglycan isolated from normally growing cells. However, the action of the amidase in vivo on peptidoglycan was clearly detectable during autolysis. The amidase activity of cells treated by osmotic shock, ether or toluene, as well as that of mutants with altered outer membrane composition was investigated. Attempts to reveal a transfer reaction catalysed by amidase were unsuccessful. Furthermore, by its location and specificity, amidase was clearly not involved in the formation of UDP-MurNAc. The possibility that it might be functioning in vivo as a hydrolase degrading exogeneous peptidoglycan fragments in the periplasma was substantiated by the fact that MurNAc itself and MurNAc-peptides could sustain growth of E. coli as sole carbon and nitrogen sources. Finally, out of 200 thermosensitive mutants examined for altered amidase activity, only two strains had less than 50% of the normal level of activity, whereas ten strains were found to possess more than 50%. In fact, two of the overproducers encountered presented a 4-5-fold increase in activity.
- Published
- 1983
- Full Text
- View/download PDF
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