60 results on '"Pantel Vokonas"'
Search Results
2. Psychological stress and epigenetic aging in older men: The VA normative aging study
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Jamaji C. Nwanaji-Enwerem, Andres Cardenas, Xu Gao, Cuicui Wang, Pantel Vokonas, Avron Spiro, Anwar D. Osborne, Anna Kosheleva, Lifang Hou, Andrea A. Baccarelli, and Joel Schwartz
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Perceived stress ,DNA methylation ,DNAm age ,Trauma ,Epigenetic clock ,Biological age ,Medicine - Abstract
Psychological stress remains an important risk factor for morbidity and mortality throughout the life course. However, there have been counterintuitive findings reported in previous studies of older persons that examine the relationships of perceived psychological stress with DNA methylation-based markers of aging, which also serve as predictors of morbidity and mortality (epigenetic age/clocks). We aimed to replicate and expand findings from existing work by examining relationships of self-reported stress with nine epigenetic clocks: Hannum, Horvath, Intrinsic, Extrinsic, SkinBloodClock, PhenoAge, GrimAge, DNAm Telomere Length, and Pace of Aging. We analyzed data from 607 male participants (mean age 73.2 years) of the VA Normative Aging Study with one to two study visits from 1999 to 2007 (observations = 956). Stress was assessed via the 14-item Perceived Stress Scale (PSS). Epigenetic age was calculated from DNA methylation measured in leukocytes with the HumanMethylation450 BeadChip. In linear mixed effects models adjusted for demographic/lifestyle/health factors, a standard deviation (sd) increase in PSS was associated with Horvath (β = −0.35-years, 95%CI: −0.61, −0.09, P = 0.008) and Intrinsic (β = −0.40-years, 95%CI: −0.67, −0.13, P = 0.004) epigenetic age deceleration. However, in models limited to participants with the highest levels of stress (≥75th-percentile), Horvath (β = 2.29-years, 95%CI: 0.16, 4.41, P = 0.04) and Intrinsic (β = 2.06-years, 95%CI: −0.17, 4.28, P = 0.07) age acceleration associations were observed. Our results reinforce the complexity of psychological stress and epigenetic aging relationships and lay a foundation for future studies that explore longitudinal relationships with other adult stress metrics and factors that can influence stress such as resilience measures.
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- 2023
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3. Short-term air pollution and temperature exposure and changes in the extracellular microRNA profile of Normative Aging Study (NAS) participants
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Mahdieh Danesh Yazdi, Feiby L. Nassan, Anna Kosheleva, Cuicui Wang, Zongli Xu, Qian Di, Weeberb J Requia, Nicole T. Comfort, Haotian Wu, Louise C. Laurent, Peter DeHoff, Pantel Vokonas, Andrea A. Baccarelli, and Joel D. Schwartz
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Air pollution ,microRNA ,Particulate matter ,Ozone ,Nitrogen dioxide ,Ambient temperature ,Environmental sciences ,GE1-350 - Abstract
Background: While the health effects of air pollution and temperature are widely studied, the molecular effects are poorly understood. Extracellular microRNAs (ex-miRNAs) have the potential to serve as diagnostic or prognostic biomarkers and/or to act as intercellular signaling molecules that mediate the effects of environmental exposures on health outcomes. Methods: We examined the relationship between short-term exposure to air pollution and ambient temperature and the ex-miRNA profiles of participants in the Normative Aging Study (NAS) from 1999 to 2015. Our exposures were defined as same-day, two-day, three-day, one-week, two-week, and three-week moving averages of PM2.5, NO2, O3, and temperature which were derived from high-resolution spatio-temporal models. The ex-miRNA profiles of the subjects were obtained during follow-up visits. We analyzed the data using a longitudinal quantile regression model adjusted for individual covariates, batch effects, and time trends. We adjusted for multiple comparisons using a false discovery rate (FDR) correction. Ex-miRNAs that were significantly associated with exposures were further investigated using pathway analyses. Results: We found that all the examined exposures were associated with changes in ex-miRNA profiles in our study, particularly PM2.5 which was responsible for most of the statistically significant results. We found 110 statistically significant exposure-outcome relationships that revealed associations with the levels of 52 unique ex-miRNAs. Pathway analyses showed these ex-miRNAs have been linked to target mRNAs, genes, and biological mechanisms that could affect virtually every organ system, and as such may be linked to multiple clinical disease presentations such as cardiovascular disease, respiratory disease, and neurological disease. Conclusions: Air pollution and temperature exposures were significantly associated with alterations in the ex-miRNA profiles of NAS subjects with possible biological consequences.
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- 2023
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4. Metabolomics and Self-Reported Depression, Anxiety, and Phobic Symptoms in the VA Normative Aging Study
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Nicole Prince, Meryl Stav, Margaret Cote, Su H. Chu, Chirag M. Vyas, Olivia I. Okereke, Natalia Palacios, Augusto A Litonjua, Pantel Vokonas, David Sparrow, Avron Spiro, Jessica A. Lasky-Su, and Rachel S. Kelly
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metabolomics ,normative aging study (NAS) ,brief symptom inventory (BSI) ,depression ,anxiety ,phobic anxiety ,Microbiology ,QR1-502 - Abstract
Traditional approaches to understanding metabolomics in mental illness have focused on investigating a single disorder or comparisons between diagnoses, but a growing body of evidence suggests substantial mechanistic overlap in mental disorders that could be reflected by the metabolome. In this study, we investigated associations between global plasma metabolites and abnormal scores on the depression, anxiety, and phobic anxiety subscales of the Brief Symptom Inventory (BSI) among 405 older males who participated in the Normative Aging Study (NAS). Our analysis revealed overlapping and distinct metabolites associated with each mental health dimension subscale and four metabolites belonging to xenobiotic, carbohydrate, and amino acid classes that were consistently associated across all three symptom dimension subscales. Furthermore, three of these four metabolites demonstrated a higher degree of alteration in men who reported poor scores in all three dimensions compared to men with poor scores in only one, suggesting the potential for shared underlying biology but a differing degree of perturbation when depression and anxiety symptoms co-occur. Our findings implicate pathways of interest relevant to the overlap of mental health conditions in aging veterans and could represent clinically translatable targets underlying poor mental health in this high-risk population.
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- 2023
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5. The role of solar and geomagnetic activity in endothelial activation and inflammation in the NAS cohort.
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Jessica E Schiff, Carolina L Z Vieira, Eric Garshick, Veronica Wang, Annelise Blomberg, Diane R Gold, Joel Schwartz, Samantha M Tracy, Pantel Vokonas, and Petros Koutrakis
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Medicine ,Science - Abstract
This study investigated the associations between solar and geomagnetic activity and circulating biomarkers of systemic inflammation and endothelial activation in the Normative Aging Study (NAS) cohort. Mixed effects models with moving day averages from day 0 to day 28 were used to study the associations between solar activity (sunspot number (SSN), interplanetary magnetic field (IMF)), geomagnetic activity (planetary K index (Kp index), and various inflammatory and endothelial markers. Biomarkers included intracellular adhesion molecule-1 (sICAM-1), vascular cell adhesion molecule-1 (sVCAM-1), C-reactive protein (CRP), and fibrinogen. After adjusting for demographic and meteorological variables, we observed significant positive associations between sICAM-1 and sVCAM-1 concentrations and solar and geomagnetic activity parameters: IMF, SSN, and Kp. Additionally, a negative association was observed between fibrinogen and Kp index and a positive association was observed for CRP and SSN. These results demonstrate that solar and geomagnetic activity might be upregulating endothelial activation and inflammation.
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- 2022
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6. DunedinPACE, a DNA methylation biomarker of the pace of aging
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Daniel W Belsky, Avshalom Caspi, David L Corcoran, Karen Sugden, Richie Poulton, Louise Arseneault, Andrea Baccarelli, Kartik Chamarti, Xu Gao, Eilis Hannon, Hona Lee Harrington, Renate Houts, Meeraj Kothari, Dayoon Kwon, Jonathan Mill, Joel Schwartz, Pantel Vokonas, Cuicui Wang, Benjamin S Williams, and Terrie E Moffitt
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aging ,geroscience ,biological aging ,gerontology ,DNA methylation ,epigenetic ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Background: Measures to quantify changes in the pace of biological aging in response to intervention are needed to evaluate geroprotective interventions for humans. Previously, we showed that quantification of the pace of biological aging from a DNA-methylation blood test was possible (Belsky et al., 2020). Here, we report a next-generation DNA-methylation biomarker of Pace of Aging, DunedinPACE (for Pace of Aging Calculated from the Epigenome). Methods: We used data from the Dunedin Study 1972–1973 birth cohort tracking within-individual decline in 19 indicators of organ-system integrity across four time points spanning two decades to model Pace of Aging. We distilled this two-decade Pace of Aging into a single-time-point DNA-methylation blood-test using elastic-net regression and a DNA-methylation dataset restricted to exclude probes with low test-retest reliability. We evaluated the resulting measure, named DunedinPACE, in five additional datasets. Results: DunedinPACE showed high test-retest reliability, was associated with morbidity, disability, and mortality, and indicated faster aging in young adults with childhood adversity. DunedinPACE effect-sizes were similar to GrimAge Clock effect-sizes. In analysis of incident morbidity, disability, and mortality, DunedinPACE and added incremental prediction beyond GrimAge. Conclusions: DunedinPACE is a novel blood biomarker of the pace of aging for gerontology and geroscience. Funding: This research was supported by US-National Institute on Aging grants AG032282, AG061378, AG066887, and UK Medical Research Council grant MR/P005918/1.
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- 2022
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7. Solar Activity Is Associated With Diastolic and Systolic Blood Pressure in Elderly Adults
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Veronica A. Wang, Carolina L. Zilli Vieira, Eric Garshick, Joel D. Schwartz, Michael S. Garshick, Pantel Vokonas, and Petros Koutrakis
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aged ,air pollutants ,autonomic nervous system ,blood pressure ,solar activity ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Since solar activity and related geomagnetic disturbances modulate autonomic nervous system activity, we hypothesized that these events would be associated with blood pressure (BP). Methods and Results We studied 675 elderly men from the Normative Aging Study (Boston, MA) with 1949 BP measurements between 2000 and 2017. Mixed‐effects regression models were used to investigate the association of average 1‐day (ie, day of BP measurement) to 28‐day interplanetary magnetic field intensity, sunspot number, and a dichotomized measure of global geomagnetic activity (Kp index) in 4‐day increments with diastolic and systolic BP. We adjusted for meteorological conditions and other covariates associated with BP, and in additional models adjusted for ambient air pollutants (particulate matter with an aerodynamic diameter ≤2.5 µm, black carbon, and particle number) and ambient particle radioactivity. There were positive associations between interplanetary magnetic field, sunspot number, and Kp index and BP that were greatest with these exposures averaged over 16 through 28 days before BP measurement. An interquartile range increase of 16‐day interplanetary magnetic field and sunspot number and higher Kp index were associated with a 2.5 (95% CI, 1.7‒3.2), 2.8 (95% CI, 2.1‒3.4), and 1.7 (95% CI, 0.8‒2.5) mm Hg increase, respectively, for diastolic BP as well as a 2.1 (95% CI, 0.7‒3.6), 2.7 (95% CI, 1.5‒4.0), and 0.4 (95% CI, −1.2 to 2.1) mm Hg increase, respectively, for systolic BP. Associations remained after adjustment for ambient air pollutants and ambient particle radioactivity. Conclusions Solar activity and solar‐driven geomagnetic disturbances were positively associated with BP, suggesting that these natural phenomena influence BP in elderly men.
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- 2021
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8. Impacts of air pollution, temperature, and relative humidity on leukocyte distribution: An epigenetic perspective
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Xu Gao, Elena Colicino, Jincheng Shen, Marianthi-Anna Kioumourtzoglou, Allan C. Just, Jamaji C. Nwanaji-Enwerem, Brent Coull, Xihong Lin, Pantel Vokonas, Yinan Zheng, Lifang Hou, Joel Schwartz, and Andrea A. Baccarelli
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Environmental sciences ,GE1-350 - Abstract
Background: Exploring the associations of air pollution and weather variables with blood leukocyte distribution is critical to understand the impacts of environmental exposures on the human immune system. Objectives: As previous analyses have been mainly based on data from cell counters, which might not be feasible in epidemiologic studies including large populations of long-stored blood samples, we aimed to expand the understanding of this topic by employing the leukocyte distribution estimated by DNA methylation profiles. Methods: We measured DNA methylation profiles in blood samples using Illumina HumanMethylation450 BeadChip from 1519 visits of 774 Caucasian males participating in the Normative Aging Study. Leukocyte distribution was estimated using Houseman's and Horvath's algorithms. Data on air pollution exposure, temperature, and relative humidity within 28 days before each blood draw was obtained. Results: After fully adjusting for potential covariates, PM2.5, black carbon, particle number, carbon monoxide, nitrogen dioxide, sulfur dioxide, temperature, and relative humidity were associated with the proportions of at least one subtype of leukocytes. Particularly, an interquartile range-higher 28-day average exposure of PM2.5 was associated with 0.147-, 0.054- and 0.101-unit lower proportions (z-scored) of plasma cells, naïve CD8+ T cells, and natural killers, respectively, and 0.059- and 0.161-unit higher proportions (z-scored) of naïve CD4+ T cells and CD8+ T cells, respectively. Conclusions: Our study suggests that short-term air pollution exposure, temperature, and relative humidity are associated with leukocyte distribution. Our study further provides a successful attempt to use epigenetic patterns to assess the influences of environmental exposures on human immune profiles. Keywords: Air pollution, Weather variations, DNA methylation, Leukocyte distribution, Epigenetic epidemiology, Environmental health
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- 2019
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9. Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm
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Daniel W Belsky, Avshalom Caspi, Louise Arseneault, Andrea Baccarelli, David L Corcoran, Xu Gao, Eiliss Hannon, Hona Lee Harrington, Line JH Rasmussen, Renate Houts, Kim Huffman, William E Kraus, Dayoon Kwon, Jonathan Mill, Carl F Pieper, Joseph A Prinz, Richie Poulton, Joel Schwartz, Karen Sugden, Pantel Vokonas, Benjamin S Williams, and Terrie E Moffitt
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aging ,biological aging ,DNA methylation ,epigenetic ,human ,life-course ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Biological aging is the gradual, progressive decline in system integrity that occurs with advancing chronological age, causing morbidity and disability. Measurements of the pace of aging are needed as surrogate endpoints in trials of therapies designed to prevent disease by slowing biological aging. We report a blood-DNA-methylation measure that is sensitive to variation in pace of biological aging among individuals born the same year. We first modeled change-over-time in 18 biomarkers tracking organ-system integrity across 12 years of follow-up in n = 954 members of the Dunedin Study born in 1972–1973. Rates of change in each biomarker over ages 26–38 years were composited to form a measure of aging-related decline, termed Pace-of-Aging. Elastic-net regression was used to develop a DNA-methylation predictor of Pace-of-Aging, called DunedinPoAm for Dunedin(P)ace(o)f(A)ging(m)ethylation. Validation analysis in cohort studies and the CALERIE trial provide proof-of-principle for DunedinPoAm as a single-time-point measure of a person’s pace of biological aging.
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- 2020
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10. Short-term ambient particle radioactivity level and renal function in older men: Insight from the Normative Aging Study
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Xu Gao, Petros Koutrakis, Annelise J. Blomberg, Brent Coull, Pantel Vokonas, Joel Schwartz, and Andrea A. Baccarelli
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Environmental sciences ,GE1-350 - Abstract
Background: Whole-body and thoracic ionizing radiation exposure are both associated with the development of renal dysfunction. However, whether low-level environmental radiation from air pollution affects renal function remains unknown. Objectives: We investigated the association of particle radioactivity (PR) with renal function defined by the estimated glomerular filtration rate (eGFR) and chronic kidney disease (CKD) in the Normative Aging Study. Methods: This longitudinal analysis included 2491 medical visits from 809 white males enrolled between 1999 and 2013. The eGFR was calculated using the CKD-EPI and MDRD equations, and CKD cases were identified as those with an eGFR
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- 2019
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11. Associations between ambient particle radioactivity and lung function
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Marguerite M. Nyhan, Mary Rice, Annelise Blomberg, Brent A. Coull, Eric Garshick, Pantel Vokonas, Joel Schwartz, Diane R. Gold, and Petros Koutrakis
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Environmental sciences ,GE1-350 - Abstract
Previous studies have suggested increased risk of respiratory diseases and mortality following short-term exposures to ionizing radiation. However, the short-term respiratory effects of low-level environmental radiation associated with air pollution particles have not been considered. Although ambient particulate matter (PM) has been reproducibly linked to decreased lung function and to increased respiratory related morbidity, the properties of PM promoting its toxicity are uncertain. As such, we evaluated whether lung function was associated with exposures to radioactive components of ambient PM, referred to as particle radioactivity (PR). For this, we performed a repeated-measures analysis of 839 men to examine associations between PR exposure and lung function using mixed-effects regression models, adjusting for potential confounders. We examined whether PR-lung function associations changed after adjusting for PM2.5 (particulate matter≤2.5 μm) or black carbon, and vice versa. PR was measured by the USEPA's radiation monitoring network. We found that higher PR exposure was associated with a lower forced vital capacity (FVC) and forced expiratory volume in 1 second (FEV1). An IQR increase in 28-day PR exposure was associated with a 2.4% lower FVC [95% confidence interval (CI): 1.4, 3.4% p
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- 2019
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12. Blood Epigenetic Age may Predict Cancer Incidence and Mortality
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Yinan Zheng, Brian T. Joyce, Elena Colicino, Lei Liu, Wei Zhang, Qi Dai, Martha J. Shrubsole, Warren A. Kibbe, Tao Gao, Zhou Zhang, Nadereh Jafari, Pantel Vokonas, Joel Schwartz, Andrea A. Baccarelli, and Lifang Hou
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Epigenetic age ,Cancer risk ,DNA methylation ,Medicine ,Medicine (General) ,R5-920 - Abstract
Biological measures of aging are important for understanding the health of an aging population, with epigenetics particularly promising. Previous studies found that tumor tissue is epigenetically older than its donors are chronologically. We examined whether blood Δage (the discrepancy between epigenetic and chronological ages) can predict cancer incidence or mortality, thus assessing its potential as a cancer biomarker. In a prospective cohort, Δage and its rate of change over time were calculated in 834 blood leukocyte samples collected from 442 participants free of cancer at blood draw. About 3–5 years before cancer onset or death, Δage was associated with cancer risks in a dose-responsive manner (P = 0.02) and a one-year increase in Δage was associated with cancer incidence (HR: 1.06, 95% CI: 1.02–1.10) and mortality (HR: 1.17, 95% CI: 1.07–1.28). Participants with smaller Δage and decelerated epigenetic aging over time had the lowest risks of cancer incidence (P = 0.003) and mortality (P = 0.02). Δage was associated with cancer incidence in a ‘J-shaped’ manner for subjects examined pre-2003, and with cancer mortality in a time-varying manner. We conclude that blood epigenetic age may mirror epigenetic abnormalities related to cancer development, potentially serving as a minimally invasive biomarker for cancer early detection.
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- 2016
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13. Associations Between Ambient Particle Radioactivity and Blood Pressure: The NAS (Normative Aging Study)
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Marguerite M. Nyhan, Brent A. Coull, Annelise J. Blomberg, Carol L.Z. Vieira, Eric Garshick, Abdulaziz Aba, Pantel Vokonas, Diane R. Gold, Joel Schwartz, and Petros Koutrakis
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blood pressure ,epidemiology ,particle radioactivity ,particle toxicity ,particulate matter ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
BackgroundThe cardiovascular effects of low‐level environmental radiation exposures are poorly understood. Although particulate matter (PM) has been linked to cardiovascular morbidity and mortality, and elevated blood pressure (BP), the properties promoting its toxicity remain uncertain. Addressing a knowledge gap, we evaluated whether BP increased with higher exposures to radioactive components of ambient PM, herein referred to as particle radioactivity (PR). Methods and ResultsWe performed a repeated‐measures analysis of 852 men to examine associations between PR exposure and BP using mixed‐effects regression models. As a surrogate for PR, we used gross β activity, measured by the US Environmental Protection Agency's radiation monitoring network. Higher PR exposure was associated with increases in both diastolic BP and systolic BP, for exposures from 1 to 28 days. An interquartile range increase in 28‐day PR exposure was associated with a 2.95–mm Hg increase in diastolic BP (95% confidence interval, 2.25–3.66; P
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- 2018
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14. Blood Telomere Length Attrition and Cancer Development in the Normative Aging Study Cohort
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Lifang Hou, Brian Thomas Joyce, Tao Gao, Lei Liu, Yinan Zheng, Frank J. Penedo, Siran Liu, Wei Zhang, Raymond Bergan, Qi Dai, Pantel Vokonas, Mirjam Hoxha, Joel Schwartz, and Andrea Baccarelli
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Telomere ,Longitudinal study ,Cancer incidence ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Accelerated telomere shortening may cause cancer via chromosomal instability, making it a potentially useful biomarker. However, publications on blood telomere length (BTL) and cancer are inconsistent. We prospectively examined BTL measures over time and cancer incidence. Methods: We included 792 Normative Aging Study participants with 1–4 BTL measurements from 1999 to 2012. We used linear mixed-effects models to examine BTL attrition by cancer status (relative to increasing age and decreasing years pre-diagnosis), Cox models for time-dependent associations, and logistic regression for cancer incidence stratified by years between BTL measurement and diagnosis. Findings: Age-related BTL attrition was faster in cancer cases pre-diagnosis than in cancer-free participants (pdifference = 0.017); all participants had similar age-adjusted BTL 8–14 years pre-diagnosis, followed by decelerated attrition in cancer cases resulting in longer BTL three (p = 0.003) and four (p = 0.012) years pre-diagnosis. Longer time-dependent BTL was associated with prostate cancer (HR = 1.79, p = 0.03), and longer BTL measured ≤4 years pre-diagnosis with any (OR = 3.27, p
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- 2015
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15. Associations between changes in city and address specific temperature and QT interval--the VA Normative Aging Study.
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Amar J Mehta, Itai Kloog, Antonella Zanobetti, Brent A Coull, David Sparrow, Pantel Vokonas, and Joel Schwartz
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Medicine ,Science - Abstract
The underlying mechanisms of the association between ambient temperature and cardiovascular morbidity and mortality are not well understood, particularly for daily temperature variability. We evaluated if daily mean temperature and standard deviation of temperature was associated with heart rate-corrected QT interval (QTc) duration, a marker of ventricular repolarization in a prospective cohort of older men.This longitudinal analysis included 487 older men participating in the VA Normative Aging Study with up to three visits between 2000-2008 (n = 743). We analyzed associations between QTc and moving averages (1-7, 14, 21, and 28 days) of the 24-hour mean and standard deviation of temperature as measured from a local weather monitor, and the 24-hour mean temperature estimated from a spatiotemporal prediction model, in time-varying linear mixed-effect regression. Effect modification by season, diabetes, coronary heart disease, obesity, and age was also evaluated.Higher mean temperature as measured from the local monitor, and estimated from the prediction model, was associated with longer QTc at moving averages of 21 and 28 days. Increased 24-hr standard deviation of temperature was associated with longer QTc at moving averages from 4 and up to 28 days; a 1.9°C interquartile range increase in 4-day moving average standard deviation of temperature was associated with a 2.8 msec (95%CI: 0.4, 5.2) longer QTc. Associations between 24-hr standard deviation of temperature and QTc were stronger in colder months, and in participants with diabetes and coronary heart disease.In this sample of older men, elevated mean temperature was associated with longer QTc, and increased variability of temperature was associated with longer QTc, particularly during colder months and among individuals with diabetes and coronary heart disease. These findings may offer insight of an important underlying mechanism of temperature-related cardiovascular morbidity and mortality in an older population.
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- 2014
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16. A novel genetic score approach using instruments to investigate interactions between pathways and environment: application to air pollution.
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Marie-Abele Bind, Brent Coull, Helen Suh, Robert Wright, Andrea Baccarelli, Pantel Vokonas, and Joel Schwartz
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Medicine ,Science - Abstract
Air pollution has been associated with increased systemic inflammation markers. We developed a new pathway analysis approach to investigate whether gene variants within relevant pathways (oxidative stress, endothelial function, and metal processing) modified the association between particulate air pollution and fibrinogen, C-reactive protein (CRP), intercellular adhesion molecule-1 (ICAM-1), and vascular cell adhesion molecule-1 (VCAM-1). Our study population consisted of 822 elderly participants of the Normative Aging Study (1999-2011). To investigate the role of biological mechanisms and to reduce the number of comparisons in the analysis, we created pathway-specific scores using gene variants related to each pathway. To select the most appropriate gene variants, we used the least absolute shrinkage and selection operator (Lasso) to relate independent outcomes representative of each pathway (8-hydroxydeoxyguanosine for oxidative stress, augmentation index for endothelial function, and patella lead for metal processing) to gene variants. A high genetic score corresponds to a higher allelic risk profile. We fit mixed-effects models to examine modification by the genetic score of the weekly air pollution association with the outcome. Among participants with higher genetic scores within the oxidative stress pathway, we observed significant associations between particle number and fibrinogen, while we did not find any association among participants with lower scores (p(interaction) = 0.04). Compared to individuals with low genetic scores of metal processing gene variants, participants with higher scores had greater effects of particle number on fibrinogen (p(interaction) = 0.12), CRP (p(interaction) = 0.02), and ICAM-1 (pinteraction = 0.08). This two-stage penalization method is easy to implement and can be used for large-scale genetic applications.
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- 2014
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17. Cohort Network: A Knowledge Graph toward Data Dissemination and Knowledge-Driven Discovery for Cohort Studies
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Yike Shen, Marianthi-Anna Kioumourtzoglou, Haotian Wu, Pantel Vokonas, Avron Spiro, Ana Navas-Acien, Andrea A. Baccarelli, and Feng Gao
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Environmental Chemistry ,General Chemistry - Published
- 2023
18. All Supplementary Figures and Tables from DNA Methylation of Telomere-Related Genes and Cancer Risk
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Lifang Hou, Andrea Baccarelli, Joel Schwartz, Pantel Vokonas, Jincheng Shen, Mirjam Hoxha, Lewis R. Roberts, Chad J. Achenbach, Hushan Yang, Robert Murphy, Masha Kocherginsky, Tao Gao, Lei Liu, Zhou Zhang, Drew Nannini, Yinan Zheng, and Brian T. Joyce
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Table S1: Detailed information on all CpGs of interest Table S2: Cancer-associated CpGs in TRGs by pathway at FDR < 0.05, with unspecified skin malignancies excluded Table S3: Methylation trajectory over time by cancer status Table S4: Logistic regression results for DNA methylation measured over 8 years before diagnosis/censoring Table S5: Regulatory elements enrichment analysis results Figure S1: Plots of Beta-coefficients by genomic location for all CpGs on six genes of interest Figure S2: DNA methylation by years to cancer diagnosis/censoring and cancers status with 95% confidence intervals Figure S3: DNA methylation by years to cancer diagnosis/censoring and cancer status for CpG additional sites Figure S4: Regulatory enrichment analysis results
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- 2023
19. Age Acceleration is Associated with Reduced Cognitive Function in Older Men: Results from the Normative Aging Study
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Koshiq Hossain, Cuicui Wang, Joel Schwartz, Marc G. Weisskopf, Lifang Hou, Robert O. Wright, Avron Spiro III, Pantel Vokonas, Howard Hu, Andrea Baccarelli, and Diddier Prada
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General Earth and Planetary Sciences ,General Environmental Science - Published
- 2022
20. The Role of Solar Activity in Endothelial Activation and Inflammation in the NAS Cohort
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Jessica Schiff, Carolina L.Z. Vieira, Eric Garshick, Veronica Wang, Annelise Blomberg, Diane R. Gold, Joel Schwartz, Samantha M. Tracy, Pantel Vokonas, and Petros Koutrakis
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General Earth and Planetary Sciences ,General Environmental Science - Published
- 2022
21. Exploring exposure-outcome relationships inside the VA Normative Aging Study using graph learning
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Feng Gao, Marianthi-Anna Kioumourtzoglou, Pantel Vokonas, Avron Spiro III, Andrea Baccarelli, and Yike Shen
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General Earth and Planetary Sciences ,General Environmental Science - Published
- 2022
22. Solar and Geomagnetic Activity Reduces Pulmonary Function and Enhances Particulate Pollution Effects
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Kritika Anand, Carolina L.Z. Vieira, Eric Garshick, Veronica Wang, Annelise Blomberg, Diane R. Gold, Joel Schwartz, Pantel Vokonas, and Petros Koutrakis
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Air Pollutants ,Environmental Engineering ,Dust ,Environmental Exposure ,Pollution ,Soot ,Air Pollution ,Forced Expiratory Volume ,Environmental Chemistry ,Humans ,General Earth and Planetary Sciences ,Particulate Matter ,Waste Management and Disposal ,Lung ,Aged ,General Environmental Science - Abstract
Increased solar and geomagnetic activity (SGA) may alter sympathetic nervous system activity, reduce antioxidant activity, and modulate physiochemical processes that contribute to atmospheric aerosols, all which may reduce pulmonary function.Investigate associations between forced expiratory volume at 1 s (FEVWe conducted a repeated measures analysis in 726 Normative Aging Study participants (Boston, Massachusetts, USA) between 2000 and 2017, using interplanetary magnetic field (IMF), planetary K index (Kp), and sunspot number (SSN) as SGA measures. Linear mixed effects models were used to assess exposure moving averages up to 28 days for both SGA and pollution.Increases in IMF, Kp Index and SSN from the day of the pulmonary function test averaged through day 28 of were associated with a significant decrement in FEVIncreased periods of solar and geomagnetic activity may directly contribute to impaired pulmonary function and also enhance effects of PM
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- 2022
23. Geomagnetic Disturbances Reduce Heart Rate Variability in the Normative Aging Study
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Carolina Zilli Vieira, Eric Garshick, Kelly Chen, Joel Schwartz, Man Liu, Pantel Vokonas, and Petros Koutrakis
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General Earth and Planetary Sciences ,General Environmental Science - Published
- 2022
24. Intermediate and long-term exposure to air pollution and temperature and the extracellular microRNA profile of participants in the normative aging study (NAS)
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Mahdieh Danesh Yazdi, Feiby L. Nassan, Anna Kosheleva, Cuicui Wang, Zongli Xu, Qian Di, Weeberb J. Requia, Nicole T. Comfort, Haotian Wu, Louise C. Laurent, Peter DeHoff, Pantel Vokonas, Andrea A. Baccarelli, and Joel D. Schwartz
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Air Pollutants ,Aging ,microRNA ,Nitrogen Dioxide ,Temperature ,Air pollution ,Environmental Exposure ,Biological Sciences ,Toxicology ,Biochemistry ,MicroRNAs ,Ozone ,Good Health and Well Being ,Chemical Sciences ,Genetics ,Humans ,2.2 Factors relating to the physical environment ,Particulate Matter ,Climate-Related Exposures and Conditions ,Ambient temperature ,Aetiology ,Environmental Sciences ,Biotechnology ,General Environmental Science - Abstract
BackgroundThe molecular effects of intermediate and long-term exposure to air pollution and temperature, such as those on extracellular microRNA (ex-miRNA) are not well understood but may have clinical consequences.ObjectivesTo assess the association between exposure to ambient air pollution and temperature and ex-miRNA profiles.MethodsOur study population consisted of 734 participants in the Normative Aging Study (NAS) between 1999 and 2015. We used high-resolution models to estimate four-week, eight-week, twelve-week, six-month, and one-year moving averages of PM2.5, O3, NO2, and ambient temperature based on geo-coded residential addresses. The outcome of interest was the extracellular microRNA (ex-miRNA) profile of each participant over time. We used a longitudinal quantile regression approach to estimate the association between the exposures and each ex-miRNA. Results were corrected for multiple comparisons and ex-miRNAs that were still significantly associated with the exposures were further analyzed using KEGG pathway analysis and Ingenuity Pathway Analysis.ResultsWe found 151 significant associations between levels of PM2.5, O3, NO2, and ambient temperature and 82 unique ex-miRNAs across multiple quantiles. Most of the significant results were associations with intermediate-term exposure to O3, long-term exposure to PM2.5, and both intermediate and long-term exposure to ambient temperature. The exposures were most often associated with the 75th and 90th percentile of the outcomes. Pathway analyses of significant ex-miRNAs revealed their involvement in biological pathways involving cell function and communication as well as clinical diseases such as cardiovascular disease, respiratory disease, and neurological disease.ConclusionOur results show that intermediate and long-term exposure to all our exposures of interest were associated with changes in the ex-miRNA profile of study participants. Further studies on environmental risk factors and ex-miRNAs are warranted.
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- 2023
25. Geomagnetic disturbances reduce heart rate variability in the Normative Aging Study
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Carolina L. Zilli Vieira, Kelly Chen, Eric Garshick, Man Liu, Pantel Vokonas, Petter Ljungman, Joel Schwartz, and Petros Koutrakis
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Male ,Aging ,Air Pollutants ,Electrocardiography ,Environmental Engineering ,Heart Rate ,Environmental Chemistry ,Humans ,Coronary Disease ,Pollution ,Waste Management and Disposal ,Aged - Abstract
Solar and geomagnetic activity (GA) have been linked to increased cardiovascular (CVD) events. We hypothesize that heart rate variability (HRV) may be the biological mechanism between increased CVD risk and intense geomagnetic disturbances (GMD).To evaluate the impact of GA and intense GMD on HRV in 809 elderly men [age mean 74.5 (SD = 6.8)] enrolled in the Normative Aging Study (Greater Boston Area), we performed repeated-measures using mixed-effects regression models. We evaluated two HRV outcomes: the square root of the mean squared differences of successive normal-to-normal intervals (r-MSSD) and the standard deviation of normal-to-normal heartbeat intervals (SDNN) in milliseconds (ms). We also compared the associations between KWe found a near immediate effect of continuous and higher KThis is the first study to demonstrate the potential adverse effects of geomagnetic activity on reduced heart rate variability in a large epidemiologic cohort over an extended period, which may have important clinical implications among different populations.
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- 2022
26. An integrative analysis of clinical and epigenetic biomarkers of mortality
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Tianxiao Huan, Steve Nguyen, Elena Colicino, Carolina Ochoa-Rosales, W. David Hill, Jennifer A. Brody, Mette Soerensen, Yan Zhang, Antoine Baldassari, Mohamed Ahmed Elhadad, Tanaka Toshiko, Yinan Zheng, Arce Domingo-Relloso, Dong Heon Lee, Jiantao Ma, Chen Yao, Chunyu Liu, Shih-Jen Hwang, Roby Joehanes, Myriam Fornage, Jan Bressler, Joyce BJ van Meurs, Birgit Debrabant, Jonas Mengel-From, Jacob Hjelmborg, Kaare Christensen, Pantel Vokonas, Joel Schwartz, Sina A. Gahrib, Nona Sotoodehnia, Colleen M. Sitlani, Sonja Kunze, Christian Gieger, Annette Peters, Melanie Waldenberger, Ian J. Deary, Luigi Ferrucci, Yishu Qu, Philip Greenland, Donald M Lloyd-Jones, Lifang Hou, Stefania Bandinelli, Trudy Voortman, Brenner Hermann, Andrea Baccarelli, Eric Whitsel, James S. Pankow, and Daniel Levy
- Abstract
DNA methylation (DNAm) has been reported to be associated with many diseases and mortality. We hypothesized that the integration of DNAm with clinical risk factors would improve mortality prediction.We performed an epigenome-wide association study of whole blood DNAm in relation to mortality in 15 cohorts (n=15,013). During a mean follow-up of 10 years, there were 4314 deaths from all-causes including 1235 cardiovascular disease (CVD) deaths and 868 cancer deaths. Ancestry-stratified meta-analysis of all-cause mortality identified 163 CpGs in European ancestry (EA) and 17 in African ancestry (AA) participants at P-7, of which 41 (EA) and 16 (AA) were also associated with CVD death, and 15 (EA) and 9 (AA) with cancer death. We built DNAm-based prediction models for all-cause mortality that predicted mortality risk independent of clinical risk factors. The mortality prediction model trained by integrating DNAm with clinical risk factors showed a substantial improvement in prediction of cancer death with 11% and 5% increase in the C-index in internal and external replications, compared with the model trained by clinical risk factors alone. Mendelian randomization identified 15 CpGs in relation to longevity, CVD, or cancer risk. For example, cg06885782 (in KCNQ4) was positively associated with risk for prostate cancer (Beta=1.2, PMR=4.1x10-4), and negatively associated with longevity (Beta=-1.9, PMR=0.02). Pathway analysis revealed that genes associated with mortality-related CpGs are enriched for immune and cancer related pathways. We identified replicable DNAm signatures of mortality and demonstrated the potential utility of CpGs as informative biomarkers for prediction of mortality risk.
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- 2022
27. Author response: DunedinPACE, a DNA methylation biomarker of the pace of aging
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Daniel W Belsky, Avshalom Caspi, David L Corcoran, Karen Sugden, Richie Poulton, Louise Arseneault, Andrea Baccarelli, Kartik Chamarti, Xu Gao, Eilis Hannon, Hona Lee Harrington, Renate Houts, Meeraj Kothari, Dayoon Kwon, Jonathan Mill, Joel Schwartz, Pantel Vokonas, Cuicui Wang, Benjamin S Williams, and Terrie E Moffitt
- Published
- 2021
28. Correction for: Mitochondria and aging in older individuals: an analysis of DNA methylation age metrics, leukocyte telomere length, and mitochondrial DNA copy number in the VA normative aging study
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Jacopo Dolcini, Haotian Wu, Jamaji C. Nwanaji-Enwerem, Marianthi-Anna Kioumourtozlogu, Akin Cayir, Marco Sanchez-Guerra, Pantel Vokonas, Joel Schwarz, and Andrea A. Baccarelli
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Aging ,Cell Biology - Published
- 2020
29. Blood Leukocyte DNA Methylation Predicts Risk of Future Myocardial Infarction and Coronary Heart Disease
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Golareh, Agha, Michael M, Mendelson, Cavin K, Ward-Caviness, Roby, Joehanes, TianXiao, Huan, Rahul, Gondalia, Elias, Salfati, Jennifer A, Brody, Giovanni, Fiorito, Jan, Bressler, Brian H, Chen, Symen, Ligthart, Simonetta, Guarrera, Elena, Colicino, Allan C, Just, Simone, Wahl, Christian, Gieger, Amy R, Vandiver, Toshiko, Tanaka, Dena G, Hernandez, Luke C, Pilling, Andrew B, Singleton, Carlotta, Sacerdote, Vittorio, Krogh, Salvatore, Panico, Rosario, Tumino, Yun, Li, Guosheng, Zhang, James D, Stewart, James S, Floyd, Kerri L, Wiggins, Jerome I, Rotter, Michael, Multhaup, Kelly, Bakulski, Steven, Horvath, Philip S, Tsao, Devin M, Absher, Pantel, Vokonas, Joel, Hirschhorn, M Daniele, Fallin, Chunyu, Liu, Stefania, Bandinelli, Eric, Boerwinkle, Abbas, Dehghan, Joel D, Schwartz, Bruce M, Psaty, Andrew P, Feinberg, Lifang, Hou, Luigi, Ferrucci, Nona, Sotoodehnia, Giuseppe, Matullo, Annette, Peters, Myriam, Fornage, Themistocles L, Assimes, Eric A, Whitsel, Daniel, Levy, and Andrea A, Baccarelli
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Risk ,Adult ,Male ,Clinical Sciences ,Myocardial Infarction ,Coronary Disease ,Cardiorespiratory Medicine and Haematology ,Cardiovascular ,Article ,Cohort Studies ,Population Groups ,Clinical Research ,Leukocytes ,Genetics ,genomics ,Humans ,Prospective Studies ,coronary heart disease ,Heart Disease - Coronary Heart Disease ,Aged ,epigenetics ,Incidence ,Prevention ,Human Genome ,gene expression regulation ,DNA Methylation ,Middle Aged ,Prognosis ,Atherosclerosis ,United States ,Europe ,Heart Disease ,Cardiovascular System & Hematology ,coronary artery disease ,Public Health and Health Services ,CpG Islands ,Female ,Genome-Wide Association Study - Abstract
BackgroundDNA methylation is implicated in coronary heart disease (CHD), but current evidence is based on small, cross-sectional studies. We examined blood DNA methylation in relation to incident CHD across multiple prospective cohorts.MethodsNine population-based cohorts from the United States and Europe profiled epigenome-wide blood leukocyte DNA methylation using the Illumina Infinium 450k microarray, and prospectively ascertained CHD events including coronary insufficiency/unstable angina, recognized myocardial infarction, coronary revascularization, and coronary death. Cohorts conducted race-specific analyses adjusted for age, sex, smoking, education, body mass index, blood cell type proportions, and technical variables. We conducted fixed-effect meta-analyses across cohorts.ResultsAmong 11 461 individuals (mean age 64 years, 67% women, 35% African American) free of CHD at baseline, 1895 developed CHD during a mean follow-up of 11.2 years. Methylation levels at 52 CpG (cytosine-phosphate-guanine) sites were associated with incident CHD or myocardial infarction (false discovery rate
- Published
- 2019
30. Abstract 134: Does Low-Level Cumulative Lead Play a Role in Resistant-Hypertension?
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Alex Zheutlin, Howard Hu, Marc Weisskopf, David Sparrow, Pantel Vokonas, and Sung Kyun Park
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cardiovascular diseases ,Cardiology and Cardiovascular Medicine - Abstract
Purpose: Deposition of lead into bone offers a better method over conventional blood lead measurement to discern long-term lead exposure and its insidious accumulation within the body. Bone lead deposition has been identified as an independent risk factor for hypertension (HTN). Yet, little is known how bone lead as a risk factor for HTN can be translated into clinical utility. We examined the association between bone lead levels and resistant-HTN. Methods: All subjects were males, participating in the Veterans Affairs Normative Aging Study (NAS) with an age variation of 48-93 years old. Participants were included if there was complete data on HTN (systolic blood pressure, diastolic blood pressure, and anti-HTN medication), lead (blood, bone-patella, bone-tibia), as well as demographic and confounding variables. Cases of resistant-HTN were identified by meeting criteria for a) inadequate SBP (≥140 mmHg) or DBP (≥90 mmHg) on 3 medications or b) requiring ≥ 4 medications for blood pressure control. Resistant-HTN was categorized as a dichotomous variable, based upon meeting the noted criteria, while tibia and patella bone lead were treated as continuous variables. The data was analyzed using a binomial logistic regression, accounting for demographic and confounding variables. Results: Of the 871 total study participants, 111 cases of resistant-HTN (12.7%) were identified. Amongst the cases of resistant-HTN, the mean tibia and patella lead levels were 23.1 μg/g and 31.5 μg/g, respectively. Both mean levels were higher than those among the participants without resistant-HTN (21.5 μg/g and 30.9 μg/g, respectively). Tibia lead levels demonstrated a significant association with resistant-HTN (OR=1.27 (95% CI, 1.01-1.59) per one IQR increase in tibia lead (15μg/g), p=0.04) after adjusting for age, BMI, cigarette pack-year burden, income, education, and ethnicity. A weak, non-significant association was observed between patella lead and resistant-HTN (OR = 1.16 (95% CI, 0.92-1.46) per one IQR increase in patella lead (21μg/g), p=0.21). Conclusion: Lead has been long-studied for its effect on blood pressure. Yet, lead has not previously been assessed for the role it plays in clinical outcomes. Difficulty in attaining goal blood pressure may be influenced by environmental exposures. Our study demonstrates an increased association between tibia lead and resistant-HTN status, with an OR of 1.27 per one IQR increase in tibia lead. Tibia lead represents a novel risk factor for resistant-HTN. Future research should consider screening and mitigation strategies for populations with resistant-HTN exposed to long-term low-levels of lead.
- Published
- 2018
31. miRNA processing gene polymorphisms, blood DNA methylation age and long-term ambient PM
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Jamaji C, Nwanaji-Enwerem, Elena, Colicino, Lingzhen, Dai, Qian, Di, Allan C, Just, Lifang, Hou, Pantel, Vokonas, Immaculata, De Vivo, Bernardo, Lemos, Quan, Lu, Marc G, Weisskopf, Andrea A, Baccarelli, and Joel D, Schwartz
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Male ,MicroRNAs ,Humans ,Particulate Matter ,DNA Methylation ,Polymorphism, Single Nucleotide ,Aged ,Research Article - Abstract
We tested whether genetic variation in miRNA processing genes modified the association of PMWe conducted a repeated measures study based on 552 participants from the Normative Aging Study with multiple visits between 2000 and 2011 (n = 940 visits). Address-level 1-year PMIn fully adjusted linear mixed-effects models, having at least one copy of the minor rs4961280 [AGO2] allele was associated with a lower DNAm-age (β = -1.13; 95% CI: -2.26 to -0.002). However, the association of PM
- Published
- 2017
32. Additional file 2: Table S1. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
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Characteristics of the study participants at first examination (nâ =â 22). (DOCX 18 kb)
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- 2016
- Full Text
- View/download PDF
33. Additional file 5: Table S3. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
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complex mixtures - Abstract
Associations between ambient PM2.5 moving average time windows and levels of miRNAs in extracellular vesicles. (DOCX 31 kb)
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- 2016
- Full Text
- View/download PDF
34. Additional file 6: Figures S1â S4. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
(PDF 1036 kb)
35. Additional file 6: Figure S3. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
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2. Zero hunger ,3. Good health - Abstract
Forest plot showing odds ratios (95Â % CI) of the association between miRNAs in extracellular vesicles and coronary heart disease history. All estimates were adjusted for age; body mass index (BMI); number of pack-years of smoking; total miRNA counts, and the number of red blood cells (RBCs), white blood cells (WBCs), and platelets. (DOCX 181 kb)
36. Additional file 7: Table S4. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
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3. Good health - Abstract
Odds ratios (95Â % CI) of the association between miRNAs in extracellular vesicles and coronary heart disease history. (DOCX 15 kb)
37. Additional file 1: Table S1. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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body regions ,nervous system ,fungi ,3. Good health - Abstract
Clinical characteristics of the individuals in the discovery and replication studies. (PDF 590 kb)
38. Additional file 4: Figure S2. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
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2. Zero hunger - Abstract
Fold change (95Â % CI) of selected miRNAs in extracellular vesicles over different time windows of ambient PM2.5 levels. Fold changes (95Â % CI) for let-7Â g-5p, miR-126-3p, miR-15a-5p, miR-223-3p, miR-23a-3p and miR-93-5p in response to ambient PM2.5 one-day, one-week, one-month, three-month, six-month, and one-year moving averages before blood sample collection, respectively; all estimates were adjusted for age; body mass index (BMI); number of pack-years of smoking; total miRNA counts, and the number of red blood cells (RBCs), white blood cells (WBCs), and platelets; SD indicates standard deviation. (DOCX 58 kb)
39. Additional file 11: Table S10. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
GWAS enrichment analysis. (PDF 335 kb)
40. Additional file 1: Table S1. of Exposure to sub-chronic and long-term particulate air pollution and heart rate variability in an elderly cohort: the Normative Aging Study
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Mordukhovich, Irina, Coull, Brent, Kloog, Itai, Koutrakis, Petros, Pantel Vokonas, and Schwartz, Joel
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13. Climate action ,11. Sustainability - Abstract
Spearman correlation coefficients between selected exposure measurement intervals for BC and PM2.5a. BC: black carbon; PM2.5: particulate matter
41. Additional file 12: Table S11. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
Canonical pathways identified using IPA. (PDF 339 kb)
42. Additional file 6: Figure S3. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
- Subjects
2. Zero hunger ,3. Good health - Abstract
Forest plot showing odds ratios (95Â % CI) of the association between miRNAs in extracellular vesicles and coronary heart disease history. All estimates were adjusted for age; body mass index (BMI); number of pack-years of smoking; total miRNA counts, and the number of red blood cells (RBCs), white blood cells (WBCs), and platelets. (DOCX 181 kb)
43. Additional file 12: Table S11. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
- Author
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
Canonical pathways identified using IPA. (PDF 339 kb)
44. Additional file 11: Table S10. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
- Author
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
GWAS enrichment analysis. (PDF 335 kb)
45. Additional file 13: of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
- Author
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
Supplemental text. (PDF 1005 kb)
46. Additional file 7: Table S4. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
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3. Good health - Abstract
Odds ratios (95Â % CI) of the association between miRNAs in extracellular vesicles and coronary heart disease history. (DOCX 15 kb)
47. Additional file 6: Figures S1â S4. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
- Author
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
(PDF 1036 kb)
48. Additional file 13: of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
- Author
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
Supplemental text. (PDF 1005 kb)
49. Additional file 2: Table S2. of DNA methylation signatures of chronic low-grade inflammation are associated with complex diseases
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Symen Ligthart, Marzi, Carola, Aslibekyan, Stella, Mendelson, Michael, Conneely, Karen, Tanaka, Toshiko, Colicino, Elena, Waite, Lindsay, Joehanes, Roby, Weihua Guan, Brody, Jennifer, Elks, Cathy, Marioni, Riccardo, Jhun, Min, Golareh Agha, Bressler, Jan, Cavin Ward-Caviness, Chen, Brian, Tianxiao Huan, Bakulski, Kelly, Salfati, Elias, Fiorito, Giovanni, Wahl, Simone, Schramm, Katharina, Sha, Jin, Hernandez, Dena, Just, Allan, Smith, Jennifer, Sotoodehnia, Nona, Pilling, Luke, Pankow, James, Tsao, Phil, Chunyu Liu, Zhao, Wei, Guarrera, Simonetta, Michopoulos, Vasiliki, Smith, Alicia, Peters, Marjolein, Melzer, David, Pantel Vokonas, Fornage, Myriam, Prokisch, Holger, Bis, Joshua, Chu, Audrey, Herder, Christian, Grallert, Harald, Yao, Chen, Shah, Sonia, McRae, Allan, Honghuang Lin, Horvath, Steve, Fallin, Daniele, Hofman, Albert, Wareham, Nicholas, Wiggins, Kerri, Feinberg, Andrew, Starr, John, Visscher, Peter, Murabito, Joanne, Kardia, Sharon, Absher, Devin, Binder, Elisabeth, Singleton, Andrew, Bandinelli, Stefania, Peters, Annette, Waldenberger, Melanie, Matullo, Giuseppe, Schwartz, Joel, Demerath, Ellen, AndrĂŠ Uitterlinden, Meurs, Joyce Van, Franco, Oscar, Yii-Der Chen, Levy, Daniel, Turner, Stephen, Deary, Ian, Ressler, Kerry, JosĂŠe Dupuis, Ferrucci, Luigi, Ong, Ken, Themistocles Assimes, Boerwinkle, Eric, Koenig, Wolfgang, Arnett, Donna, Baccarelli, Andrea, Emelia Benjamin, and Dehghan, Abbas
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3. Good health - Abstract
Study-specific quality control and analysis details. (PDF 475 kb)
50. Additional file 1: Figure S1. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals
- Author
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Rodosthenis Rodosthenous, Coull, Brent, Lu, Quan, Pantel Vokonas, Schwartz, Joel, and Baccarelli, Andrea
- Subjects
3. Good health - Abstract
Morphological characterization of serum extracellular vesicles (EVs). Preparations of EVs were imaged by transmission electron microscopy (TEM). (a) non-labeled EVs, (b) EVs labeled with gold-conjugated anti-CD63 antibody, (c) EVs labeled with gold-conjugated anti-CD81 antibody. Images were taken by a JEOL 1200EX microscope coupled with an AMT 2Â k CCD camera, at the Harvard Medical School Electron Microscopy Core. (DOCX 4627 kb)
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