14,482 results on '"Pantel"'
Search Results
2. Psychological stress and epigenetic aging in older men: The VA normative aging study
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Jamaji C. Nwanaji-Enwerem, Andres Cardenas, Xu Gao, Cuicui Wang, Pantel Vokonas, Avron Spiro, Anwar D. Osborne, Anna Kosheleva, Lifang Hou, Andrea A. Baccarelli, and Joel Schwartz
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Perceived stress ,DNA methylation ,DNAm age ,Trauma ,Epigenetic clock ,Biological age ,Medicine - Abstract
Psychological stress remains an important risk factor for morbidity and mortality throughout the life course. However, there have been counterintuitive findings reported in previous studies of older persons that examine the relationships of perceived psychological stress with DNA methylation-based markers of aging, which also serve as predictors of morbidity and mortality (epigenetic age/clocks). We aimed to replicate and expand findings from existing work by examining relationships of self-reported stress with nine epigenetic clocks: Hannum, Horvath, Intrinsic, Extrinsic, SkinBloodClock, PhenoAge, GrimAge, DNAm Telomere Length, and Pace of Aging. We analyzed data from 607 male participants (mean age 73.2 years) of the VA Normative Aging Study with one to two study visits from 1999 to 2007 (observations = 956). Stress was assessed via the 14-item Perceived Stress Scale (PSS). Epigenetic age was calculated from DNA methylation measured in leukocytes with the HumanMethylation450 BeadChip. In linear mixed effects models adjusted for demographic/lifestyle/health factors, a standard deviation (sd) increase in PSS was associated with Horvath (β = −0.35-years, 95%CI: −0.61, −0.09, P = 0.008) and Intrinsic (β = −0.40-years, 95%CI: −0.67, −0.13, P = 0.004) epigenetic age deceleration. However, in models limited to participants with the highest levels of stress (≥75th-percentile), Horvath (β = 2.29-years, 95%CI: 0.16, 4.41, P = 0.04) and Intrinsic (β = 2.06-years, 95%CI: −0.17, 4.28, P = 0.07) age acceleration associations were observed. Our results reinforce the complexity of psychological stress and epigenetic aging relationships and lay a foundation for future studies that explore longitudinal relationships with other adult stress metrics and factors that can influence stress such as resilience measures.
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- 2023
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3. Short-term air pollution and temperature exposure and changes in the extracellular microRNA profile of Normative Aging Study (NAS) participants
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Mahdieh Danesh Yazdi, Feiby L. Nassan, Anna Kosheleva, Cuicui Wang, Zongli Xu, Qian Di, Weeberb J Requia, Nicole T. Comfort, Haotian Wu, Louise C. Laurent, Peter DeHoff, Pantel Vokonas, Andrea A. Baccarelli, and Joel D. Schwartz
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Air pollution ,microRNA ,Particulate matter ,Ozone ,Nitrogen dioxide ,Ambient temperature ,Environmental sciences ,GE1-350 - Abstract
Background: While the health effects of air pollution and temperature are widely studied, the molecular effects are poorly understood. Extracellular microRNAs (ex-miRNAs) have the potential to serve as diagnostic or prognostic biomarkers and/or to act as intercellular signaling molecules that mediate the effects of environmental exposures on health outcomes. Methods: We examined the relationship between short-term exposure to air pollution and ambient temperature and the ex-miRNA profiles of participants in the Normative Aging Study (NAS) from 1999 to 2015. Our exposures were defined as same-day, two-day, three-day, one-week, two-week, and three-week moving averages of PM2.5, NO2, O3, and temperature which were derived from high-resolution spatio-temporal models. The ex-miRNA profiles of the subjects were obtained during follow-up visits. We analyzed the data using a longitudinal quantile regression model adjusted for individual covariates, batch effects, and time trends. We adjusted for multiple comparisons using a false discovery rate (FDR) correction. Ex-miRNAs that were significantly associated with exposures were further investigated using pathway analyses. Results: We found that all the examined exposures were associated with changes in ex-miRNA profiles in our study, particularly PM2.5 which was responsible for most of the statistically significant results. We found 110 statistically significant exposure-outcome relationships that revealed associations with the levels of 52 unique ex-miRNAs. Pathway analyses showed these ex-miRNAs have been linked to target mRNAs, genes, and biological mechanisms that could affect virtually every organ system, and as such may be linked to multiple clinical disease presentations such as cardiovascular disease, respiratory disease, and neurological disease. Conclusions: Air pollution and temperature exposures were significantly associated with alterations in the ex-miRNA profiles of NAS subjects with possible biological consequences.
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- 2023
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4. Metabolomics and Self-Reported Depression, Anxiety, and Phobic Symptoms in the VA Normative Aging Study
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Nicole Prince, Meryl Stav, Margaret Cote, Su H. Chu, Chirag M. Vyas, Olivia I. Okereke, Natalia Palacios, Augusto A Litonjua, Pantel Vokonas, David Sparrow, Avron Spiro, Jessica A. Lasky-Su, and Rachel S. Kelly
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metabolomics ,normative aging study (NAS) ,brief symptom inventory (BSI) ,depression ,anxiety ,phobic anxiety ,Microbiology ,QR1-502 - Abstract
Traditional approaches to understanding metabolomics in mental illness have focused on investigating a single disorder or comparisons between diagnoses, but a growing body of evidence suggests substantial mechanistic overlap in mental disorders that could be reflected by the metabolome. In this study, we investigated associations between global plasma metabolites and abnormal scores on the depression, anxiety, and phobic anxiety subscales of the Brief Symptom Inventory (BSI) among 405 older males who participated in the Normative Aging Study (NAS). Our analysis revealed overlapping and distinct metabolites associated with each mental health dimension subscale and four metabolites belonging to xenobiotic, carbohydrate, and amino acid classes that were consistently associated across all three symptom dimension subscales. Furthermore, three of these four metabolites demonstrated a higher degree of alteration in men who reported poor scores in all three dimensions compared to men with poor scores in only one, suggesting the potential for shared underlying biology but a differing degree of perturbation when depression and anxiety symptoms co-occur. Our findings implicate pathways of interest relevant to the overlap of mental health conditions in aging veterans and could represent clinically translatable targets underlying poor mental health in this high-risk population.
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- 2023
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5. Metabolomic signatures of the long-term exposure to air pollution and temperature
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Feiby L. Nassan, Rachel S. Kelly, Anna Kosheleva, Petros Koutrakis, Pantel S. Vokonas, Jessica A. Lasky-Su, and Joel D. Schwartz
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Metabolomics ,Air pollution ,Particulate matter ,Temperature ,Normative aging study (NAS) ,Industrial medicine. Industrial hygiene ,RC963-969 ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Long-term exposures to air pollution has been reported to be associated with inflammation and oxidative stress. However, the underlying metabolic mechanisms remain poorly understood. Objectives We aimed to determine the changes in the blood metabolome and thus the metabolic pathways associated with long-term exposure to outdoor air pollution and ambient temperature. Methods We quantified metabolites using mass-spectrometry based global untargeted metabolomic profiling of plasma samples among men from the Normative Aging Study (NAS). We estimated the association between long-term exposure to PM2.5, NO2, O3, and temperature (annual average of central site monitors) with metabolites and their associated metabolic pathways. We used multivariable linear mixed-effect regression models (LMEM) while simultaneously adjusting for the four exposures and potential confounding and correcting for multiple testing. As a reduction method for the intercorrelated metabolites (outcome), we further used an independent component analysis (ICA) and conducted LMEM with the same exposures. Results Men (N = 456) provided 648 blood samples between 2000 and 2016 in which 1158 metabolites were quantified. On average, men were 75.0 years and had an average body mass index of 27.7 kg/m2. Almost all men (97%) were not current smokers. The adjusted analysis showed statistically significant associations with several metabolites (58 metabolites with PM2.5, 15 metabolites with NO2, and 6 metabolites with temperature) while no metabolites were associated with O3. One out of five ICA factors (factor 2) was significantly associated with PM2.5. We identified eight perturbed metabolic pathways with long-term exposure to PM2.5 and temperature: glycerophospholipid, sphingolipid, glutathione, beta-alanine, propanoate, and purine metabolism, biosynthesis of unsaturated fatty acids, and taurine and hypotaurine metabolism. These pathways are related to inflammation, oxidative stress, immunity, and nucleic acid damage and repair. Conclusions Using a global untargeted metabolomic approach, we identified several significant metabolites and metabolic pathways associated with long-term exposure to PM2.5, NO2 and temperature. This study is the largest metabolomics study of long-term air pollution, to date, the first study to report a metabolomic signature of long-term temperature exposure, and the first to use ICA in the analysis of both.
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- 2021
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6. The role of solar and geomagnetic activity in endothelial activation and inflammation in the NAS cohort.
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Jessica E Schiff, Carolina L Z Vieira, Eric Garshick, Veronica Wang, Annelise Blomberg, Diane R Gold, Joel Schwartz, Samantha M Tracy, Pantel Vokonas, and Petros Koutrakis
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Medicine ,Science - Abstract
This study investigated the associations between solar and geomagnetic activity and circulating biomarkers of systemic inflammation and endothelial activation in the Normative Aging Study (NAS) cohort. Mixed effects models with moving day averages from day 0 to day 28 were used to study the associations between solar activity (sunspot number (SSN), interplanetary magnetic field (IMF)), geomagnetic activity (planetary K index (Kp index), and various inflammatory and endothelial markers. Biomarkers included intracellular adhesion molecule-1 (sICAM-1), vascular cell adhesion molecule-1 (sVCAM-1), C-reactive protein (CRP), and fibrinogen. After adjusting for demographic and meteorological variables, we observed significant positive associations between sICAM-1 and sVCAM-1 concentrations and solar and geomagnetic activity parameters: IMF, SSN, and Kp. Additionally, a negative association was observed between fibrinogen and Kp index and a positive association was observed for CRP and SSN. These results demonstrate that solar and geomagnetic activity might be upregulating endothelial activation and inflammation.
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- 2022
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7. DunedinPACE, a DNA methylation biomarker of the pace of aging
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Daniel W Belsky, Avshalom Caspi, David L Corcoran, Karen Sugden, Richie Poulton, Louise Arseneault, Andrea Baccarelli, Kartik Chamarti, Xu Gao, Eilis Hannon, Hona Lee Harrington, Renate Houts, Meeraj Kothari, Dayoon Kwon, Jonathan Mill, Joel Schwartz, Pantel Vokonas, Cuicui Wang, Benjamin S Williams, and Terrie E Moffitt
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aging ,geroscience ,biological aging ,gerontology ,DNA methylation ,epigenetic ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Background: Measures to quantify changes in the pace of biological aging in response to intervention are needed to evaluate geroprotective interventions for humans. Previously, we showed that quantification of the pace of biological aging from a DNA-methylation blood test was possible (Belsky et al., 2020). Here, we report a next-generation DNA-methylation biomarker of Pace of Aging, DunedinPACE (for Pace of Aging Calculated from the Epigenome). Methods: We used data from the Dunedin Study 1972–1973 birth cohort tracking within-individual decline in 19 indicators of organ-system integrity across four time points spanning two decades to model Pace of Aging. We distilled this two-decade Pace of Aging into a single-time-point DNA-methylation blood-test using elastic-net regression and a DNA-methylation dataset restricted to exclude probes with low test-retest reliability. We evaluated the resulting measure, named DunedinPACE, in five additional datasets. Results: DunedinPACE showed high test-retest reliability, was associated with morbidity, disability, and mortality, and indicated faster aging in young adults with childhood adversity. DunedinPACE effect-sizes were similar to GrimAge Clock effect-sizes. In analysis of incident morbidity, disability, and mortality, DunedinPACE and added incremental prediction beyond GrimAge. Conclusions: DunedinPACE is a novel blood biomarker of the pace of aging for gerontology and geroscience. Funding: This research was supported by US-National Institute on Aging grants AG032282, AG061378, AG066887, and UK Medical Research Council grant MR/P005918/1.
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- 2022
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8. Solar Activity Is Associated With Diastolic and Systolic Blood Pressure in Elderly Adults
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Veronica A. Wang, Carolina L. Zilli Vieira, Eric Garshick, Joel D. Schwartz, Michael S. Garshick, Pantel Vokonas, and Petros Koutrakis
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aged ,air pollutants ,autonomic nervous system ,blood pressure ,solar activity ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Since solar activity and related geomagnetic disturbances modulate autonomic nervous system activity, we hypothesized that these events would be associated with blood pressure (BP). Methods and Results We studied 675 elderly men from the Normative Aging Study (Boston, MA) with 1949 BP measurements between 2000 and 2017. Mixed‐effects regression models were used to investigate the association of average 1‐day (ie, day of BP measurement) to 28‐day interplanetary magnetic field intensity, sunspot number, and a dichotomized measure of global geomagnetic activity (Kp index) in 4‐day increments with diastolic and systolic BP. We adjusted for meteorological conditions and other covariates associated with BP, and in additional models adjusted for ambient air pollutants (particulate matter with an aerodynamic diameter ≤2.5 µm, black carbon, and particle number) and ambient particle radioactivity. There were positive associations between interplanetary magnetic field, sunspot number, and Kp index and BP that were greatest with these exposures averaged over 16 through 28 days before BP measurement. An interquartile range increase of 16‐day interplanetary magnetic field and sunspot number and higher Kp index were associated with a 2.5 (95% CI, 1.7‒3.2), 2.8 (95% CI, 2.1‒3.4), and 1.7 (95% CI, 0.8‒2.5) mm Hg increase, respectively, for diastolic BP as well as a 2.1 (95% CI, 0.7‒3.6), 2.7 (95% CI, 1.5‒4.0), and 0.4 (95% CI, −1.2 to 2.1) mm Hg increase, respectively, for systolic BP. Associations remained after adjustment for ambient air pollutants and ambient particle radioactivity. Conclusions Solar activity and solar‐driven geomagnetic disturbances were positively associated with BP, suggesting that these natural phenomena influence BP in elderly men.
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- 2021
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9. Ambient PM2.5 species and ultrafine particle exposure and their differential metabolomic signatures
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Feiby L. Nassan, Cuicui Wang, Rachel S. Kelly, Jessica A. Lasky-Su, Pantel S. Vokonas, Petros Koutrakis, and Joel D. Schwartz
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Metabolomics ,Air pollution ,Particulate matter ,SPECIES, Normative Aging Study (NAS) ,Environmental sciences ,GE1-350 - Abstract
Background: The metabolomic signatures of short- and long-term exposure to PM2.5 have been reported and linked to inflammation and oxidative stress. However, little is known about the relative contribution of the specific PM2.5 species (hence sources) that drive these metabolomic signatures. Objectives: We aimed to determine the relative contribution of the different species of PM2.5 exposure to the perturbed metabolic pathways related to changes in the plasma metabolome. Methods: We performed mass-spectrometry based metabolomic profiling of plasma samples among men from the Normative Aging Study to identify metabolic pathways associated with PM2.5 species. The exposure windows included short-term (one, seven-, and thirty-day moving average) and long-term (one year moving average). We used linear mixed-effect regression with subject-specific intercepts while simultaneously adjusting for PM2.5, NO2, O3, temperature, relative humidity, and covariates and correcting for multiple testing. We also used independent component analysis (ICA) to examine the relative contribution of patterns of PM2.5 species. Results: Between 2000 and 2016, 456 men provided 648 blood samples, in which 1158 metabolites were quantified. We chose 305 metabolites for the short-term and 288 metabolites for the long-term exposure in this analysis that were significantly associated (p-value
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- 2021
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10. Impacts of air pollution, temperature, and relative humidity on leukocyte distribution: An epigenetic perspective
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Xu Gao, Elena Colicino, Jincheng Shen, Marianthi-Anna Kioumourtzoglou, Allan C. Just, Jamaji C. Nwanaji-Enwerem, Brent Coull, Xihong Lin, Pantel Vokonas, Yinan Zheng, Lifang Hou, Joel Schwartz, and Andrea A. Baccarelli
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Environmental sciences ,GE1-350 - Abstract
Background: Exploring the associations of air pollution and weather variables with blood leukocyte distribution is critical to understand the impacts of environmental exposures on the human immune system. Objectives: As previous analyses have been mainly based on data from cell counters, which might not be feasible in epidemiologic studies including large populations of long-stored blood samples, we aimed to expand the understanding of this topic by employing the leukocyte distribution estimated by DNA methylation profiles. Methods: We measured DNA methylation profiles in blood samples using Illumina HumanMethylation450 BeadChip from 1519 visits of 774 Caucasian males participating in the Normative Aging Study. Leukocyte distribution was estimated using Houseman's and Horvath's algorithms. Data on air pollution exposure, temperature, and relative humidity within 28 days before each blood draw was obtained. Results: After fully adjusting for potential covariates, PM2.5, black carbon, particle number, carbon monoxide, nitrogen dioxide, sulfur dioxide, temperature, and relative humidity were associated with the proportions of at least one subtype of leukocytes. Particularly, an interquartile range-higher 28-day average exposure of PM2.5 was associated with 0.147-, 0.054- and 0.101-unit lower proportions (z-scored) of plasma cells, naïve CD8+ T cells, and natural killers, respectively, and 0.059- and 0.161-unit higher proportions (z-scored) of naïve CD4+ T cells and CD8+ T cells, respectively. Conclusions: Our study suggests that short-term air pollution exposure, temperature, and relative humidity are associated with leukocyte distribution. Our study further provides a successful attempt to use epigenetic patterns to assess the influences of environmental exposures on human immune profiles. Keywords: Air pollution, Weather variations, DNA methylation, Leukocyte distribution, Epigenetic epidemiology, Environmental health
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- 2019
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11. Analysis of repeated leukocyte DNA methylation assessments reveals persistent epigenetic alterations after an incident myocardial infarction
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Cavin K. Ward-Caviness, Golareh Agha, Brian H. Chen, Liliane Pfeiffer, Rory Wilson, Petra Wolf, Christian Gieger, Joel Schwartz, Pantel S. Vokonas, Lifang Hou, Allan C. Just, Stefania Bandinelli, Dena G. Hernandez, Andrew B. Singleton, Holger Prokisch, Thomas Meitinger, Gabi Kastenmüller, Luigi Ferrucci, Andrea A. Baccarelli, Melanie Waldenberger, and Annette Peters
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Myocardial infarction ,DNA methylation ,Epigenetics ,Fingerprint ,Epigenetic fingerprint ,Metabolites ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Most research into myocardial infarctions (MIs) have focused on preventative efforts. For survivors, the occurrence of an MI represents a major clinical event that can have long-lasting consequences. There has been little to no research into the molecular changes that can occur as a result of an incident MI. Here, we use three cohorts to identify epigenetic changes that are indicative of an incident MI and their association with gene expression and metabolomics. Results Using paired samples from the KORA cohort, we screened for DNA methylation loci (CpGs) whose change in methylation is potentially indicative of the occurrence of an incident MI between the baseline and follow-up exams. We used paired samples from the NAS cohort to identify 11 CpGs which were predictive in an independent cohort. After removing two CpGs associated with medication usage, we were left with an “epigenetic fingerprint” of MI composed of nine CpGs. We tested this fingerprint in the InCHIANTI cohort where it moderately discriminated incident MI occurrence (AUC = 0.61, P = 6.5 × 10−3). Returning to KORA, we associated the epigenetic fingerprint loci with cis-gene expression and integrated it into a gene expression-metabolomic network, which revealed links between the epigenetic fingerprint CpGs and branched chain amino acid (BCAA) metabolism. Conclusions There are significant changes in DNA methylation after an incident MI. Nine of these CpGs show consistent changes in multiple cohorts, significantly discriminate MI in independent cohorts, and were independent of medication usage. Integration with gene expression and metabolomics data indicates a link between MI-associated epigenetic changes and BCAA metabolism.
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- 2018
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12. Exploring carbon neutrality scenarios through the life cycle assessment lens: a review of literature and methodological challenges
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Caiardi, Fanny, Azzaro-Pantel, Catherine, and Le-Boulch, Denis
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- 2024
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13. Two decades of advances in clinical oncology — lessons learned and future directions
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Banerjee, Susana, Booth, Christopher M., Bruera, Eduardo, Büchler, Markus W., Drilon, Alexander, Fry, Terry J., Ghobrial, Irene M., Gianni, Luca, Jain, Rakesh K., Kroemer, Guido, Llovet, Josep M., Long, Georgina V., Pantel, Klaus, Pritchard-Jones, Kathy, Scher, Howard I., Tabernero, Josep, Weichselbaum, Ralph R., Weller, Michael, and Wu, Yi-Long
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- 2024
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14. Alzheimer-Demenz bei Menschen mit einem Down-Syndrom: Ergebnisse leitfadengestützter Expert:inneninterviews zu Versorgungsdefiziten in Diagnostik und Therapie sowie Lösungsansätzen
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Hüer, Theresa, Weitzel, Milena, Giebel, Godwin Denk, Raszke, Pascal, Wasem, Jürgen, Levin, Johannes, Nübling, Georg, Wagemann, Olivia, Wlasich, Elisabeth, Pantel, Johannes, Tesky, Valentina, Schall, Arthur, and Walendzik, Anke
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- 2024
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15. Freezing does not influence the microarchitectural parameters of the microstructure of the freshly harvested femoral head bone
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Taillebot, Virginie, Krieger, Théo, Maurel-Pantel, Aurélien, Kim, Youngji, Ollivier, Matthieu, and Pithioux, Martine
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- 2024
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16. Efficiency of Computer-Aided Facial Phenotyping (DeepGestalt) in Individuals With and Without a Genetic Syndrome: Diagnostic Accuracy Study
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Pantel, Jean Tori, Hajjir, Nurulhuda, Danyel, Magdalena, Elsner, Jonas, Abad-Perez, Angela Teresa, Hansen, Peter, Mundlos, Stefan, Spielmann, Malte, Horn, Denise, Ott, Claus-Eric, and Mensah, Martin Atta
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Computer applications to medicine. Medical informatics ,R858-859.7 ,Public aspects of medicine ,RA1-1270 - Abstract
BackgroundCollectively, an estimated 5% of the population have a genetic disease. Many of them feature characteristics that can be detected by facial phenotyping. Face2Gene CLINIC is an online app for facial phenotyping of patients with genetic syndromes. DeepGestalt, the neural network driving Face2Gene, automatically prioritizes syndrome suggestions based on ordinary patient photographs, potentially improving the diagnostic process. Hitherto, studies on DeepGestalt’s quality highlighted its sensitivity in syndromic patients. However, determining the accuracy of a diagnostic methodology also requires testing of negative controls. ObjectiveThe aim of this study was to evaluate DeepGestalt's accuracy with photos of individuals with and without a genetic syndrome. Moreover, we aimed to propose a machine learning–based framework for the automated differentiation of DeepGestalt’s output on such images. MethodsFrontal facial images of individuals with a diagnosis of a genetic syndrome (established clinically or molecularly) from a convenience sample were reanalyzed. Each photo was matched by age, sex, and ethnicity to a picture featuring an individual without a genetic syndrome. Absence of a facial gestalt suggestive of a genetic syndrome was determined by physicians working in medical genetics. Photos were selected from online reports or were taken by us for the purpose of this study. Facial phenotype was analyzed by DeepGestalt version 19.1.7, accessed via Face2Gene CLINIC. Furthermore, we designed linear support vector machines (SVMs) using Python 3.7 to automatically differentiate between the 2 classes of photographs based on DeepGestalt's result lists. ResultsWe included photos of 323 patients diagnosed with 17 different genetic syndromes and matched those with an equal number of facial images without a genetic syndrome, analyzing a total of 646 pictures. We confirm DeepGestalt’s high sensitivity (top 10 sensitivity: 295/323, 91%). DeepGestalt’s syndrome suggestions in individuals without a craniofacially dysmorphic syndrome followed a nonrandom distribution. A total of 17 syndromes appeared in the top 30 suggestions of more than 50% of nondysmorphic images. DeepGestalt’s top scores differed between the syndromic and control images (area under the receiver operating characteristic [AUROC] curve 0.72, 95% CI 0.68-0.76; P
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- 2020
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17. Increasing access to clinical research using an innovative mobile recruitment approach: The (MoRe) concept
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Danielle Beck, Aliya Asghar, Tawni Kenworthy-Heinige, Marcus R. Johnson, Cyenthia Willis, Alexandra S. Kantorowicz, Debra L. Condon, Grant D. Huang, Terence M. Keane, Pantel S. Vokonas, Dan Darroch, James LePage, Jennifer Compton, David Leehey, Conor McBurney, Stephanie Keen, Panagiotis Kougias, Sarah Perusich, Michael E. DeBakey, Timothy Morgan, Karyn Isip, Selcuk Adabag, Marti Donaire, Debra K. Johnson, Trisha Suppes, Karen Bratcher, Ann N. Roseman, Merritt Raitt, Daniel Clegg, Jennifer Romesser, Kandi Velarde, Cicilia Velarde, Christina Nessler, Sunder Mudaliar, Murray Stein, and Catherine DeLue
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Mobile recruitment ,Recruitment barriers ,Veteran research ,Access to research ,Innovative enrollment strategies ,Medicine (General) ,R5-920 - Abstract
Background: Access to healthcare delivery programs and systems is a primary correlate to the overall health and well-being of Veterans and the general population. Participation in clinical research is a gateway to novel therapies that are intended to address current global health issues. Meeting or exceeding recruitment goals in clinical research is one of the key determinants of the timely and successful completion of a study. The travel and time burdens experienced by study participants are often considered barriers to their enrollment into clinical research. The Department of Veterans Affairs (VA) Cooperative Studies Program (CSP) established a consortium of nine VA medical centers (VAMCs) called the Network of Dedicated Enrollment Sites (NODES). The NODES program provides study site-level expertise and innovative approaches that address challenges to clinical research execution. In alignment with our mission, our program developed an approach to increase study participant access to clinical research through implementing “Mobile Recruitment (MoRe)” units. This manuscript describes the utility and challenges associated with employing this strategy to address three common barriers to clinical research participation: 1) research participant travel burden, 2) participant access to study opportunities, and 3) low participant enrollment. Methods: A plan to introduce the Mobile Recruitment (MoRe) unit as a recruitment strategy was piloted for a high-volume, observational cohort study and mega biobank in the VA health care system, the “Million Veteran Program (MVP)”. MoRe is a recruitment strategy for CSP research integrating mobile technology and atypical research recruitment locations. Recruitment locations include primary or main VA hospitals and their assigned VA Community-Based Outpatient Clinics (CBOCs). Each Node site (n = 9) received components of the MoRe unit including a laptop, printer, portable cart with storage space, cooler/ice packs for specimen storage and transport. Each site's usage of these components varied based on its respective needs. Activities focused on both VA main facilities and CBOC facilities for recruitment. Results: Seven of the nine Node sites compared the effectiveness of the MoRe unit on MVP study enrollment outcomes over three-time points: pre-intervention period, intervention period, and post-intervention period. The utilization of MoRe in the intervention period demonstrated a 36.9% increase in enrollment compared to the previous six months (pre-intervention period). There was a 2% enrollment increase at the six-month post-intervention period as compared to the intervention period. When comparing the pre-intervention period to the post-intervention period (duration of eighteen months), enrollment increased by 38.9%. Conclusion: Five of the seven sites experienced an increase in enrollment during the intervention and post-intervention periods. The two sites without an increase in enrollment experienced various extenuating factors. Characteristics of sites using MoRe included the ability to utilize a smaller, unconventional space, i.e. not a traditional clinical research exam space for recruitment. MoRe was utilized in hospital laboratory space, CBOCs, primary care clinics, and other subspecialty clinics that allowed recruitment activities but did not have dedicated space to offer the research teams for that purpose. This initiative successfully demonstrated the benefit of deploying the unit, proving its utility in cases in where there was a lack of space or alternative workstations for research activities. The implementation of MoRe by NODES as a recruitment strategy for MVP may be transferable to other VA clinical research studies, as well as to other healthcare settings executing similar clinical research activities.
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- 2020
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18. Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm
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Daniel W Belsky, Avshalom Caspi, Louise Arseneault, Andrea Baccarelli, David L Corcoran, Xu Gao, Eiliss Hannon, Hona Lee Harrington, Line JH Rasmussen, Renate Houts, Kim Huffman, William E Kraus, Dayoon Kwon, Jonathan Mill, Carl F Pieper, Joseph A Prinz, Richie Poulton, Joel Schwartz, Karen Sugden, Pantel Vokonas, Benjamin S Williams, and Terrie E Moffitt
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aging ,biological aging ,DNA methylation ,epigenetic ,human ,life-course ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
Biological aging is the gradual, progressive decline in system integrity that occurs with advancing chronological age, causing morbidity and disability. Measurements of the pace of aging are needed as surrogate endpoints in trials of therapies designed to prevent disease by slowing biological aging. We report a blood-DNA-methylation measure that is sensitive to variation in pace of biological aging among individuals born the same year. We first modeled change-over-time in 18 biomarkers tracking organ-system integrity across 12 years of follow-up in n = 954 members of the Dunedin Study born in 1972–1973. Rates of change in each biomarker over ages 26–38 years were composited to form a measure of aging-related decline, termed Pace-of-Aging. Elastic-net regression was used to develop a DNA-methylation predictor of Pace-of-Aging, called DunedinPoAm for Dunedin(P)ace(o)f(A)ging(m)ethylation. Validation analysis in cohort studies and the CALERIE trial provide proof-of-principle for DunedinPoAm as a single-time-point measure of a person’s pace of biological aging.
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- 2020
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19. Metastable DNA methylation sites associated with longitudinal lung function decline and aging in humans: an epigenome-wide study in the NAS and KORA cohorts
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Juan Jose Carmona, Richard T. Barfield, Tommaso Panni, Jamaji C. Nwanaji-Enwerem, Allan C. Just, John N. Hutchinson, Elena Colicino, Stefan Karrasch, Simone Wahl, Sonja Kunze, Nadereh Jafari, Yinan Zheng, Lifang Hou, Dawn L. DeMeo, Augusto A. Litonjua, Pantel S. Vokonas, Annette Peters, Xihong Lin, Joel Schwartz, Holger Schulz, and Andrea A. Baccarelli
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biomarker ,dna methylation ,pulmonary function ,lung function decline ,Genetics ,QH426-470 - Abstract
DNA methylation is an epigenetic regulator of gene transcription, which has been found to be both metastable and variable within human cohort studies. Currently, few studies have been done to identify metastable DNA methylation biomarkers associated with longitudinal lung function decline in humans. The identification of such biomarkers is important for screening vulnerable populations. We hypothesized that quantifiable blood-based DNA methylation alterations would serve as metastable biomarkers of lung function decline and aging, which may help to discover new pathways and/or mechanisms related to pulmonary pathogenesis. Using linear mixed models, we performed an Epigenome Wide Association Study (EWAS) between DNA methylation at CpG dinucleotides and longitudinal lung function (FVC, FEV1, FEF25–75%) decline and aging with initial discovery in the Normative Aging Study, and replication in the Cooperative Health Research in the Region of Augsburg cohort. We identified two metastable epigenetic loci associated with either poor lung function and aging, cg05575921 (AHRR gene), or lung function independently of aging, cg06126421 (IER3 gene). These loci may inform basic mechanisms associated with pulmonary function, pathogenesis, and aging. Human epigenomic variation, may help explain features of lung function decline and related pathophysiology not attributable to DNA sequence alone, such as accelerated pulmonary decline in smokers, former smokers, and perhaps non-smokers. Our EWAS across two cohorts, therefore, will likely have implications for the human population, not just the elderly.
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- 2018
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20. First molecular characterization of related cases of healthcare-associated infections involving multidrug-resistant Enterococcus faecium vanA in Algeria
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Benammar S, Pantel A, Aujoulat F, Benmehidi M, Courcol R, Lavigne JP, Romano-Bertrand S, and Marchandin H
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outbreak ,genotyping ,MLST ,rep-PCR ,PFGE ,molecular epidemiology. ,Infectious and parasitic diseases ,RC109-216 - Abstract
Sonia Benammar,1,2 Alix Pantel,3,4 Fabien Aujoulat,5 Messaoud Benmehidi,1,2 René Courcol,6,7 Jean-Philippe Lavigne,3,4 Sara Romano-Bertrand,5,8 Hélène Marchandin3,5 1Department of Microbiology, University Hospital Center Touhami Benflis, Batna, Algeria; 2Department of Medicine, University Batna 2, Batna, Algeria; 3Department of Microbiology, Nîmes University Hospital, Nîmes, France; 4Faculty of Medicine, National Institute of Health and Medical Research, INSERM U1047, University of Montpellier, Nîmes, France; 5HydroSciences Montpellier, CNRS, IRD, University of Montpellier, University Hospital of Montpellier-Nîmes, Montpellier, France; 6Faculty of Medicine, University of Lille, Lille, France; 7Department of Bacteriology, Institute of Microbiology, Lille University Hospital, Lille, France; 8Department of Infection Control, Montpellier University Hospital, Montpellier, France Purpose: Vancomycin-resistant Enterococcus (VRE) faecium (VREfm) are highly resistant bacteria emerging worldwide and rarely studied using molecular tools in Algeria since their first report in 2006. The aim of the study was to investigate healthcare-associated infections (HAIs) involving the first VRE in Batna University Hospital, Algeria, and characterize isolates using molecular tools.Patients and methods: Medical charts were reviewed for patients with VREfm. van genes were detected by multiplex polymerase chain reaction (PCR), and strains were characterized by automated repetitive sequence-based PCR (rep-PCR), multiplex rep-PCR, pulsed-field gel electrophoresis (PFGE), and multilocus sequence typing (MLST).Results: During a 6-month period, VREfm infections occurred in four patients hospitalized in three wards. The four isolates were E. faecium vanA belonging to the hospital-adapted clonal complex 17. PCR-based methods did not discriminate the isolates but MLST and PFGE delineated a subgroup of three VREfm of identical pulsotype and sequence type (ST) 80 (yet identified for five isolates in the international PubMLST database) while the fourth isolate was of ST789 (not previously identified for a VREfm) and displayed an unrelated pulsotype. The three genotypically related isolates were recovered in patients who underwent surgery in the same department, suggesting an outbreak for which the source and route of transmission remained unidentified.Conclusion: This first molecular epidemiology study of VRE in Algeria was useful in delimiting an outbreak involving three of the four HAI cases and revealed rarely encountered genotypes. Considering the threat and burden of VRE infections worldwide, particularly in the USA, and the late emergence in Algeria, our study supports the urgent need for improved and early adequate infection control measures to avoid VRE spread in North African hospitals. Keywords: outbreak, genotyping, MLST, rep-PCR, PFGE, molecular epidemiology
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- 2018
21. Feasibility and first results of a group program to increase the frequency of cognitively stimulating leisure activities in people with mild cognitive impairment (AKTIVA–MCI)
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Tesky VA, Köbe T, Witte AV, Flöel A, Schuchardt JP, Hahn A, and Pantel J
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mild cognitive impairment ,MCI ,pilot study ,intervention study ,cognitively stimulating leisure activities ,training program ,daily activity protocols ,Geriatrics ,RC952-954.6 - Abstract
Valentina A Tesky,1 Theresa Köbe,2 A Veronica Witte,2,3 Agnes Flöel,2 Jan Philipp Schuchardt,4 Andreas Hahn,4 Johannes Pantel1 1Geriatric Medicine, Institute of General Practice, Goethe University, Frankfurt, Germany; 2Department of Neurology, Charité – University Medicine Berlin, Berlin, Germany; 3Department of Neurology, Max Planck Institute of Human Cognitive and Brain Sciences, University of Leipzig, Leipzig, Germany; 4Department of Nutrition Physiology and Human Nutrition, Gottfried Wilhelm Leibniz University, Hannover, Germany Abstract: AKTIVA-MCI is a program for patients with mild cognitive impairment (MCI) that aims to enhance participation in cognitively stimulating leisure activities. Participation in cognitively stimulating activities seems to be a potential strategy for people with MCI delaying cognitive decline for a while. In total, 35 MCI patients were enrolled in the pilot study of whom 29 completed the whole program (16 female, 71.1±7.5 years; Mini Mental Status Examination score: 28±2.2). Daily activity protocols were used to measure the frequency of participation in cognitively stimulating activities during the program (12 sessions). Additional standardized psychometric tests and questionnaires were used to assess cognition, mood, and subjective memory decline. Analyses of the daily activity protocols showed that during the intervention participants increased the frequency of several cognitively stimulating leisure activities. Comparison of pre-post data indicates no changes in cognitive status, mood, and subjective memory decline. These findings indicate that the program is suitable for patients with MCI. Keywords: older people, MCI, pilot study, intervention study, cognitively stimulating leisure activities, training program, daily activity protocols
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- 2017
22. Empirical comparison of reduced representation bisulfite sequencing and Infinium BeadChip reproducibility and coverage of DNA methylation in humans
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Juan J. Carmona, William P. Accomando, Alexandra M. Binder, John N. Hutchinson, Lorena Pantano, Benedetta Izzi, Allan C. Just, Xihong Lin, Joel Schwartz, Pantel S. Vokonas, Sami S. Amr, Andrea A. Baccarelli, and Karin B. Michels
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Medicine ,Genetics ,QH426-470 - Abstract
Epigenetics: choose your DNA methylation probing tool wisely! Researchers who study human epigenetics need to carefully consider the platform used to measure genome-wide patterns of DNA methylation. A team led by Karin Michels and Andrea Baccarelli from Harvard University in Boston, Massachusetts, USA, empirically examined the strengths and weaknesses of two methylation profiling tools: Illumina’s Infinium BeadChip, which uses a microarray system to interrogate hundreds of thousands of methylation sites across the genome at single-nucleotide resolution; and a high-throughput sequencing-based approach known as rapid multiplexed reduced representation bisulfite sequencing, or rmRRBS. The former did a better job at reading methylation in protein-coding and mitochondrial-related genes, while the latter required less input DNA and covered more methylation sites across the genome. The authors conclude that a scientist’s platform preference should depend on the nature of his or her investigation.
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- 2017
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23. Differential DNA methylation and PM2.5 species in a 450K epigenome-wide association study
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Lingzhen Dai, Amar Mehta, Irina Mordukhovich, Allan C. Just, Jincheng Shen, Lifang Hou, Petros Koutrakis, David Sparrow, Pantel S. Vokonas, Andrea A. Baccarelli, and Joel D. Schwartz
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ambient particulate matter ,dna methylation ,epigenome-wide association study ,metals ,pathway enrichment ,Genetics ,QH426-470 - Abstract
Although there is growing evidence that exposure to ambient particulate matter is associated with global DNA methylation and gene-specific methylation, little is known regarding epigenome-wide changes in DNA methylation in relation to particles and, especially, particle components. Using the Illumina Infinium HumanMethylation450 BeadChip, we examined the relationship between one-year moving averages of PM2.5 species (Al, Ca, Cu, Fe, K, Na, Ni, S, Si, V, and Zn) and DNA methylation at 484,613 CpG probes in a longitudinal cohort that included 646 subjects. Bonferroni correction was applied to adjust for multiple comparisons. Bioinformatics analysis of the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment was also performed. We observed 20 Bonferroni significant (P-value < 9.4× 10−9) CpGs for Fe, 8 for Ni, and 1 for V. Particularly, methylation at Schlafen Family Member 11 (SLFN11) cg10911913 was positively associated with measured levels of all 3 species. The SLFN11 gene codes for an interferon-induced protein that inhibits retroviruses and sensitizes cancer cells to DNA-damaging agents. Bioinformatics analysis suggests that gene targets may be relevant to pathways including cancers, signal transduction, and cell growth and death. Ours is the first study to examine the epigenome-wide association between ambient particles species and DNA methylation. We found that long-term exposures to specific components of ambient particle pollution, especially particles emitted during oil combustion, were associated with methylation changes in genes relevant to immune responses. Our findings provide insight into potential biologic mechanisms on an epigenetic level.
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- 2017
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24. Short-term ambient particle radioactivity level and renal function in older men: Insight from the Normative Aging Study
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Xu Gao, Petros Koutrakis, Annelise J. Blomberg, Brent Coull, Pantel Vokonas, Joel Schwartz, and Andrea A. Baccarelli
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Environmental sciences ,GE1-350 - Abstract
Background: Whole-body and thoracic ionizing radiation exposure are both associated with the development of renal dysfunction. However, whether low-level environmental radiation from air pollution affects renal function remains unknown. Objectives: We investigated the association of particle radioactivity (PR) with renal function defined by the estimated glomerular filtration rate (eGFR) and chronic kidney disease (CKD) in the Normative Aging Study. Methods: This longitudinal analysis included 2491 medical visits from 809 white males enrolled between 1999 and 2013. The eGFR was calculated using the CKD-EPI and MDRD equations, and CKD cases were identified as those with an eGFR
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- 2019
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25. Associations between ambient particle radioactivity and lung function
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Marguerite M. Nyhan, Mary Rice, Annelise Blomberg, Brent A. Coull, Eric Garshick, Pantel Vokonas, Joel Schwartz, Diane R. Gold, and Petros Koutrakis
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Environmental sciences ,GE1-350 - Abstract
Previous studies have suggested increased risk of respiratory diseases and mortality following short-term exposures to ionizing radiation. However, the short-term respiratory effects of low-level environmental radiation associated with air pollution particles have not been considered. Although ambient particulate matter (PM) has been reproducibly linked to decreased lung function and to increased respiratory related morbidity, the properties of PM promoting its toxicity are uncertain. As such, we evaluated whether lung function was associated with exposures to radioactive components of ambient PM, referred to as particle radioactivity (PR). For this, we performed a repeated-measures analysis of 839 men to examine associations between PR exposure and lung function using mixed-effects regression models, adjusting for potential confounders. We examined whether PR-lung function associations changed after adjusting for PM2.5 (particulate matter≤2.5 μm) or black carbon, and vice versa. PR was measured by the USEPA's radiation monitoring network. We found that higher PR exposure was associated with a lower forced vital capacity (FVC) and forced expiratory volume in 1 second (FEV1). An IQR increase in 28-day PR exposure was associated with a 2.4% lower FVC [95% confidence interval (CI): 1.4, 3.4% p
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- 2019
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26. Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
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Schmidt, Axel, Danyel, Magdalena, Grundmann, Kathrin, Brunet, Theresa, Klinkhammer, Hannah, Hsieh, Tzung-Chien, Engels, Hartmut, Peters, Sophia, Knaus, Alexej, Moosa, Shahida, Averdunk, Luisa, Boschann, Felix, Sczakiel, Henrike Lisa, Schwartzmann, Sarina, Mensah, Martin Atta, Pantel, Jean Tori, Holtgrewe, Manuel, Bösch, Annemarie, Weiß, Claudia, Weinhold, Natalie, Suter, Aude-Annick, Stoltenburg, Corinna, Neugebauer, Julia, Kallinich, Tillmann, Kaindl, Angela M., Holzhauer, Susanne, Bührer, Christoph, Bufler, Philip, Kornak, Uwe, Ott, Claus-Eric, Schülke, Markus, Nguyen, Hoa Huu Phuc, Hoffjan, Sabine, Grasemann, Corinna, Rothoeft, Tobias, Brinkmann, Folke, Matar, Nora, Sivalingam, Sugirthan, Perne, Claudia, Mangold, Elisabeth, Kreiss, Martina, Cremer, Kirsten, Betz, Regina C., Mücke, Martin, Grigull, Lorenz, Klockgether, Thomas, Spier, Isabel, Heimbach, André, Bender, Tim, Brand, Fabian, Stieber, Christiane, Morawiec, Alexandra Marzena, Karakostas, Pantelis, Schäfer, Valentin S., Bernsen, Sarah, Weydt, Patrick, Castro-Gomez, Sergio, Aziz, Ahmad, Grobe-Einsler, Marcus, Kimmich, Okka, Kobeleva, Xenia, Önder, Demet, Lesmann, Hellen, Kumar, Sheetal, Tacik, Pawel, Basin, Meghna Ahuja, Incardona, Pietro, Lee-Kirsch, Min Ae, Berner, Reinhard, Schuetz, Catharina, Körholz, Julia, Kretschmer, Tanita, Di Donato, Nataliya, Schröck, Evelin, Heinen, André, Reuner, Ulrike, Hanßke, Amalia-Mihaela, Kaiser, Frank J., Manka, Eva, Munteanu, Martin, Kuechler, Alma, Cordula, Kiewert, Hirtz, Raphael, Schlapakow, Elena, Schlein, Christian, Lisfeld, Jasmin, Kubisch, Christian, Herget, Theresia, Hempel, Maja, Weiler-Normann, Christina, Ullrich, Kurt, Schramm, Christoph, Rudolph, Cornelia, Rillig, Franziska, Groffmann, Maximilian, Muntau, Ania, Tibelius, Alexandra, Schwaibold, Eva M. C., Schaaf, Christian P., Zawada, Michal, Kaufmann, Lilian, Hinderhofer, Katrin, Okun, Pamela M., Kotzaeridou, Urania, Hoffmann, Georg F., Choukair, Daniela, Bettendorf, Markus, Spielmann, Malte, Ripke, Annekatrin, Pauly, Martje, Münchau, Alexander, Lohmann, Katja, Hüning, Irina, Hanker, Britta, Bäumer, Tobias, Herzog, Rebecca, Hellenbroich, Yorck, Westphal, Dominik S., Strom, Tim, Kovacs, Reka, Riedhammer, Korbinian M., Mayerhanser, Katharina, Graf, Elisabeth, Brugger, Melanie, Hoefele, Julia, Oexle, Konrad, Mirza-Schreiber, Nazanin, Berutti, Riccardo, Schatz, Ulrich, Krenn, Martin, Makowski, Christine, Weigand, Heike, Schröder, Sebastian, Rohlfs, Meino, Vill, Katharina, Hauck, Fabian, Borggraefe, Ingo, Müller-Felber, Wolfgang, Kurth, Ingo, Elbracht, Miriam, Knopp, Cordula, Begemann, Matthias, Kraft, Florian, Lemke, Johannes R., Hentschel, Julia, Platzer, Konrad, Strehlow, Vincent, Abou Jamra, Rami, Kehrer, Martin, Demidov, German, Beck-Wödl, Stefanie, Graessner, Holm, Sturm, Marc, Zeltner, Lena, Schöls, Ludger J., Magg, Janine, Bevot, Andrea, Kehrer, Christiane, Kaiser, Nadja, Turro, Ernest, Horn, Denise, Grüters-Kieslich, Annette, Klein, Christoph, Mundlos, Stefan, Nöthen, Markus, Riess, Olaf, Meitinger, Thomas, Krude, Heiko, Krawitz, Peter M., Haack, Tobias, Ehmke, Nadja, and Wagner, Matias
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- 2024
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27. Clinical applications of circulating tumor cells in patients with solid tumors
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Smit, Daniel J., Schneegans, Svenja, and Pantel, Klaus
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- 2024
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28. Mutation analysis in individual circulating tumor cells depicts intratumor heterogeneity in melanoma
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Sementsov, Mark, Ott, Leonie, Kött, Julian, Sartori, Alexander, Lusque, Amelie, Degenhardt, Sarah, Segier, Bertille, Heidrich, Isabel, Volkmer, Beate, Greinert, Rüdiger, Mohr, Peter, Simon, Ronald, Stadler, Julia-Christina, Irwin, Darryl, Koch, Claudia, Andreas, Antje, Deitert, Benjamin, Thewes, Verena, Trumpp, Andreas, Schneeweiss, Andreas, Belloum, Yassine, Peine, Sven, Wikman, Harriett, Riethdorf, Sabine, Schneider, Stefan W, Gebhardt, Christoffer, Pantel, Klaus, and Keller, Laura
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- 2024
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29. Cochlear implant therapy improves the quality of life and social participation in the elderly: a prospective long-term evaluation
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Issing, Christian, Loth, Andreas G., Sakmen, Kenan D., Guchlerner, Leon, Helbig, Silke, Baumann, Uwe, Pantel, Johannes, and Stöver, Timo
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- 2024
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30. Zebra finches increase social behavior in traffic noise: Implications for urban songbirds
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Hawkins, Carly E, Pantel, Jelena H, Palia, Sophia T, Folks, Christine C, and Swaddle, John P
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Zoology ,Ecology ,Biological Sciences ,Life on Land ,Noise pollution ,Disturbance ,Songbirds ,Spatial behavior ,Social behavior ,Behavioral Science & Comparative Psychology - Abstract
Abstract: Traffic noise is a pervasive pollutant that affects wildlife at individual and group levels through mechanisms such as disrupting communication, affecting antipredator strategy, and/or changing how they use space within a habitat. Urbanization is expanding rapidly—few places remain untouched by anthropogenic noise disturbance—so understanding the implications of noise on wildlife behavior is paramount to conservation efforts. We asked whether traffic noise could change space use and social network metrics in flocks of captive birds. Specifically, we quantified the effects of playbacks of traffic noise on individual sociality (weighted degree, number of social partners weighted by the frequency of interactions with those social partners) and flock clustering (global clustering coefficient, connectivity of neighbors). In this study, we recorded social interactions and space use of flocks of captive zebra finches (Taeniopygia guttata) before, during, and after an experimental traffic noise introduction in two treatments: high- and lower-amplitude noise. Our results demonstrated that individual sociality and flock clustering increased in response to the noise introduction in both high-amplitude and low-amplitude treatments. Additionally, birds in the high-amplitude treatment spent more time in the room with active playback during noise playback whereas birds in the lower-amplitude treatment decreased time spent in the room closest to the high-amplitude treatment. Increased social behavior in response to traffic noise could influence disease transmission, social learning, and mating dynamics. We suggest future studies explore the mechanisms driving increased social behavior in traffic noise, such as perceived predation risk, vigilance, and cross-sensory interference.
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- 2024
31. Total-body PET/CT or LAFOV PET/CT? Axial field-of-view clinical classification
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Mingels, Clemens, Caobelli, Federico, Alavi, Abass, Sachpekidis, Christos, Wang, Meiyun, Nalbant, Hande, Pantel, Austin R, Shi, Hongcheng, Rominger, Axel, and Nardo, Lorenzo
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Biomedical and Clinical Sciences ,Clinical Sciences ,Other Physical Sciences ,Nuclear Medicine & Medical Imaging ,Clinical sciences - Published
- 2023
32. Blood Epigenetic Age may Predict Cancer Incidence and Mortality
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Yinan Zheng, Brian T. Joyce, Elena Colicino, Lei Liu, Wei Zhang, Qi Dai, Martha J. Shrubsole, Warren A. Kibbe, Tao Gao, Zhou Zhang, Nadereh Jafari, Pantel Vokonas, Joel Schwartz, Andrea A. Baccarelli, and Lifang Hou
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Epigenetic age ,Cancer risk ,DNA methylation ,Medicine ,Medicine (General) ,R5-920 - Abstract
Biological measures of aging are important for understanding the health of an aging population, with epigenetics particularly promising. Previous studies found that tumor tissue is epigenetically older than its donors are chronologically. We examined whether blood Δage (the discrepancy between epigenetic and chronological ages) can predict cancer incidence or mortality, thus assessing its potential as a cancer biomarker. In a prospective cohort, Δage and its rate of change over time were calculated in 834 blood leukocyte samples collected from 442 participants free of cancer at blood draw. About 3–5 years before cancer onset or death, Δage was associated with cancer risks in a dose-responsive manner (P = 0.02) and a one-year increase in Δage was associated with cancer incidence (HR: 1.06, 95% CI: 1.02–1.10) and mortality (HR: 1.17, 95% CI: 1.07–1.28). Participants with smaller Δage and decelerated epigenetic aging over time had the lowest risks of cancer incidence (P = 0.003) and mortality (P = 0.02). Δage was associated with cancer incidence in a ‘J-shaped’ manner for subjects examined pre-2003, and with cancer mortality in a time-varying manner. We conclude that blood epigenetic age may mirror epigenetic abnormalities related to cancer development, potentially serving as a minimally invasive biomarker for cancer early detection.
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- 2016
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33. Low‐Level Cumulative Lead and Resistant Hypertension: A Prospective Study of Men Participating in the Veterans Affairs Normative Aging Study
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Alexander R. Zheutlin, Howard Hu, Marc G. Weisskopf, David Sparrow, Pantel S. Vokonas, and Sung Kyun Park
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environment ,epidemiology ,hypertension ,hypertension, high blood pressure ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
Background Bone lead offers a better method over blood lead measurement to discern long‐term lead exposure and accumulation. We examined the risk of resistant hypertension based on bone lead levels in a prospective cohort study of NAS (Normative Aging Study). Methods and Results Participants had clinic data on hypertension (systolic blood pressure, diastolic blood pressure, and antihypertension medication), lead (blood, bone‐patella, bone‐tibia), and demographic and confounding variables. Cases of resistant hypertension were identified by meeting criteria for: (1) inadequate systolic blood pressure (>140 mm Hg) or diastolic blood pressure (>90 mm Hg) while taking 3 medications or (2) requiring >4 medications for blood pressure control. A modified Poisson regression was used for model analysis. Of the 475 participants, 97 cases of resistant hypertension (20.4%) were identified. Among the cases of resistant hypertension, the median tibia and patella lead levels were 20 μg/g and 25 μg/g, respectively, while median tibia and patella lead levels were 20 μg/g and 27.5 μg/g, respectively, in participants without resistant hypertension. Tibia lead demonstrated a significant association with resistant hypertension (relative risk, 1.19; 95% confidence interval, 1.01–1.41 [P=0.04]) per interquartile range increase in tibia lead (13–28.5 μg/g). Patella lead was not associated with resistant hypertension (relative risk, 1.10; 95% confidence interval, 0.92–1.31 [P=0.31]) per interquartile range increase in patella lead (18–40 μg/g). Blood lead levels were not significantly associated with resistant hypertension (relative risk, 1.11; 95% confidence interval, 0.88–1.40 [P=0.38]). Conclusions Tibia lead represents a novel risk factor for resistant hypertension. Our study demonstrates an increased association between tibia lead and resistant hypertension status, with an increased risk of 19% per 1 interquartile range increase in tibia lead.
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- 2018
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34. Associations Between Ambient Particle Radioactivity and Blood Pressure: The NAS (Normative Aging Study)
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Marguerite M. Nyhan, Brent A. Coull, Annelise J. Blomberg, Carol L.Z. Vieira, Eric Garshick, Abdulaziz Aba, Pantel Vokonas, Diane R. Gold, Joel Schwartz, and Petros Koutrakis
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blood pressure ,epidemiology ,particle radioactivity ,particle toxicity ,particulate matter ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
BackgroundThe cardiovascular effects of low‐level environmental radiation exposures are poorly understood. Although particulate matter (PM) has been linked to cardiovascular morbidity and mortality, and elevated blood pressure (BP), the properties promoting its toxicity remain uncertain. Addressing a knowledge gap, we evaluated whether BP increased with higher exposures to radioactive components of ambient PM, herein referred to as particle radioactivity (PR). Methods and ResultsWe performed a repeated‐measures analysis of 852 men to examine associations between PR exposure and BP using mixed‐effects regression models. As a surrogate for PR, we used gross β activity, measured by the US Environmental Protection Agency's radiation monitoring network. Higher PR exposure was associated with increases in both diastolic BP and systolic BP, for exposures from 1 to 28 days. An interquartile range increase in 28‐day PR exposure was associated with a 2.95–mm Hg increase in diastolic BP (95% confidence interval, 2.25–3.66; P
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- 2018
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35. Stability and Fluctuations in Complex Ecological Systems
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Forgoston, Eric, Day, Sarah, de Ruiter, Peter C., Doelman, Arjen, Hartemink, Nienke, Hastings, Alan, Hemerik, Lia, Hening, Alexandru, Hofbauer, Josef, Kefi, Sonia, Kessler, David A., Klauschies, Toni, Kuehn, Christian, Li, Xiaoxiao, Moore, John C., Morrien, Elly, Neutel, Anje-Margriet, Pantel, Jelena, Schreiber, Sebastian J., Shaw, Leah B., Shnerb, Nadav, Siero, Eric, Storch, Laura S., Thorne, Michael A. S., van de Leemput, Ingrid, van Velzen, Ellen, and Weinans, Els
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Quantitative Biology - Populations and Evolution - Abstract
From 08-12 August, 2022, 32 individuals participated in a workshop, Stability and Fluctuations in Complex Ecological Systems, at the Lorentz Center, located in Leiden, The Netherlands. An interdisciplinary dialogue between ecologists, mathematicians, and physicists provided a foundation of important problems to consider over the next 5-10 years. This paper outlines eight areas including (1) improving our understanding of the effect of scale, both temporal and spatial, for both deterministic and stochastic problems; (2) clarifying the different terminologies and definitions used in different scientific fields; (3) developing a comprehensive set of data analysis techniques arising from different fields but which can be used together to improve our understanding of existing data sets; (4) having theoreticians/computational scientists collaborate closely with empirical ecologists to determine what new data should be collected; (5) improving our knowledge of how to protect and/or restore ecosystems; (6) incorporating socio-economic effects into models of ecosystems; (7) improving our understanding of the role of deterministic and stochastic fluctuations; (8) studying the current state of biodiversity at the functional level, taxa level and genome level., Comment: 22 pages
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- 2023
36. Blood Telomere Length Attrition and Cancer Development in the Normative Aging Study Cohort
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Lifang Hou, Brian Thomas Joyce, Tao Gao, Lei Liu, Yinan Zheng, Frank J. Penedo, Siran Liu, Wei Zhang, Raymond Bergan, Qi Dai, Pantel Vokonas, Mirjam Hoxha, Joel Schwartz, and Andrea Baccarelli
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Telomere ,Longitudinal study ,Cancer incidence ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background: Accelerated telomere shortening may cause cancer via chromosomal instability, making it a potentially useful biomarker. However, publications on blood telomere length (BTL) and cancer are inconsistent. We prospectively examined BTL measures over time and cancer incidence. Methods: We included 792 Normative Aging Study participants with 1–4 BTL measurements from 1999 to 2012. We used linear mixed-effects models to examine BTL attrition by cancer status (relative to increasing age and decreasing years pre-diagnosis), Cox models for time-dependent associations, and logistic regression for cancer incidence stratified by years between BTL measurement and diagnosis. Findings: Age-related BTL attrition was faster in cancer cases pre-diagnosis than in cancer-free participants (pdifference = 0.017); all participants had similar age-adjusted BTL 8–14 years pre-diagnosis, followed by decelerated attrition in cancer cases resulting in longer BTL three (p = 0.003) and four (p = 0.012) years pre-diagnosis. Longer time-dependent BTL was associated with prostate cancer (HR = 1.79, p = 0.03), and longer BTL measured ≤4 years pre-diagnosis with any (OR = 3.27, p
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- 2015
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37. Detrimental impact of solar and geomagnetic activity on plasma B-complex vitamins in the VA normative aging study cohort
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Zilli Vieira, Carolina L., Liu, Cristina Su, Rudke, Anderson P., Wang, Yichen, Wang, Veronica A., Schwartz, Joel D., Vokonas, Pantel, and Koutrakis, Petros
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- 2024
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38. Multibiomarker panels in liquid biopsy for early detection of pancreatic cancer – a comprehensive review
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Reese, Kim-Lea, Pantel, Klaus, and Smit, Daniel J.
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- 2024
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39. Commercially available tests for determining cefiderocol susceptibility display variable performance in the Achromobacter genus
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Jean-Pierre, Vincent, Sorlin, Pauline, Jeannot, Katy, Chiron, Raphaël, Lavigne, Jean-Philippe, Pantel, Alix, and Marchandin, Hélène
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- 2024
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40. Nutrition guidance within a multimodal intervention improves diet quality in prodromal Alzheimer’s disease: Multimodal Preventive Trial for Alzheimer’s Disease (MIND-ADmini)
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Levak, Nicholas, Lehtisalo, Jenni, Thunborg, Charlotta, Westman, Eric, Andersen, Pia, Andrieu, Sandrine, Broersen, Laus M., Coley, Nicola, Hartmann, Tobias, Irving, Gerd Faxén, Mangialasche, Francesca, Ngandu, Tiia, Pantel, Johannes, Rosenberg, Anna, Sindi, Shireen, Soininen, Hilkka, Solomon, Alina, Wang, Rui, and Kivipelto, Miia
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- 2024
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41. Master corepressor inactivation through multivalent SLiM-induced polymerization mediated by the oncogene suppressor RAI2
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Goradia, Nishit, Werner, Stefan, Mullapudi, Edukondalu, Greimeier, Sarah, Bergmann, Lina, Lang, Andras, Mertens, Haydyn, Węglarz, Aleksandra, Sander, Simon, Chojnowski, Grzegorz, Wikman, Harriet, Ohlenschläger, Oliver, von Amsberg, Gunhild, Pantel, Klaus, and Wilmanns, Matthias
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- 2024
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42. Cefiderocol susceptibility of Achromobacter spp.: study of an accurately identified collection of 230 strains
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Jean-Pierre, Vincent, Sorlin, Pauline, Pantel, Alix, Chiron, Raphaël, Lavigne, Jean-Philippe, Jeannot, Katy, and Marchandin, Hélène
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- 2024
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43. Integrating a multimodal lifestyle intervention with medical food in prodromal Alzheimer’s disease: the MIND-ADmini randomized controlled trial
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Thunborg, Charlotta, Wang, Rui, Rosenberg, Anna, Sindi, Shireen, Andersen, Pia, Andrieu, Sandrine, Broersen, Laus M., Coley, Nicola, Couderc, Celine, Duval, Celine Z., Faxen-Irving, Gerd, Hagman, Göran, Hallikainen, Merja, Håkansson, Krister, Kekkonen, Eija, Lehtisalo, Jenni, Levak, Nicholas, Mangialasche, Francesca, Pantel, Johannes, Rydström, Anders, Stigsdotter-Neely, Anna, Wimo, Anders, Ngandu, Tiia, Soininen, Hilkka, Hartmann, Tobias, Solomon, Alina, and Kivipelto, Miia
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- 2024
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44. Diagnostic leukapheresis reveals distinct phenotypes of NSCLC circulating tumor cells
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Rieckmann, Lisa-Marie, Spohn, Michael, Ruff, Lisa, Agorku, David, Becker, Lisa, Borchers, Alina, Krause, Jenny, O’Reilly, Roisin, Hille, Jurek, Velthaus-Rusik, Janna-Lisa, Beumer, Niklas, Günther, Armin, Willnow, Lena, Imbusch, Charles D., Iglauer, Peter, Simon, Ronald, Franzenburg, Sören, Winter, Hauke, Thomas, Michael, Bokemeyer, Carsten, Gagliani, Nicola, Krebs, Christian F., Sprick, Martin, Hardt, Olaf, Riethdorf, Sabine, Trumpp, Andreas, Stoecklein, Nikolas H., Peine, Sven, Rosenstiel, Philipp, Pantel, Klaus, Loges, Sonja, and Janning, Melanie
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- 2024
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45. HERC5 downregulation in non-small cell lung cancer is associated with altered energy metabolism and metastasis
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Schneegans, Svenja, Löptien, Jana, Mojzisch, Angelika, Loreth, Desirée, Kretz, Oliver, Raschdorf, Christoph, Hanssen, Annkathrin, Gocke, Antonia, Siebels, Bente, Gunasekaran, Karthikeyan, Ding, Yi, Oliveira-Ferrer, Leticia, Brylka, Laura, Schinke, Thorsten, Schlüter, Hartmut, Paatero, Ilkka, Voß, Hannah, Werner, Stefan, Pantel, Klaus, and Wikman, Harriet
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- 2024
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46. The Use of Ground-Penetrating Radar in the Documentation and Evaluation of Iglesia San José , San Juan, Puerto Rico
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Pantel, Agamemnon Gus
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- 2012
47. Prävention und Gesundheitsförderung im und für das Alter stärken
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Gellert, Paul, Brandenburg, Hermann, Franke, Annette, Kessler, Eva-Marie, Krupp, Sonja, Pantel, Johannes, Schramek, Renate, Simm, Andreas, Swoboda, Walter, Wurm, Susanne, and Fuellen, Georg
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- 2024
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48. Spectateurs de paroles ! Délibération démocratique et théâtre à Athènes à l’époque classique by Noémie Villacèque (review)
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Pantel, Pauline Schmitt
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- 2014
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49. Intermediate and long-term exposure to air pollution and temperature and the extracellular microRNA profile of participants in the normative aging study (NAS)
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Danesh Yazdi, Mahdieh, Nassan, Feiby L, Kosheleva, Anna, Wang, Cuicui, Xu, Zongli, Di, Qian, Requia, Weeberb J, Comfort, Nicole T, Wu, Haotian, Laurent, Louise C, DeHoff, Peter, Vokonas, Pantel, Baccarelli, Andrea A, and Schwartz, Joel D
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Environmental Sciences ,Pollution and Contamination ,Aging ,Genetics ,Biotechnology ,Climate-Related Exposures and Conditions ,Aetiology ,2.2 Factors relating to the physical environment ,Good Health and Well Being ,Humans ,Air Pollutants ,Nitrogen Dioxide ,Temperature ,Particulate Matter ,Air Pollution ,MicroRNAs ,Environmental Exposure ,Ozone ,Particulate matter ,Nitrogen dioxide ,Ambient temperature ,microRNA ,Air pollution ,Chemical Sciences ,Biological Sciences ,Toxicology ,Biological sciences ,Chemical sciences ,Environmental sciences - Abstract
BackgroundThe molecular effects of intermediate and long-term exposure to air pollution and temperature, such as those on extracellular microRNA (ex-miRNA) are not well understood but may have clinical consequences.ObjectivesTo assess the association between exposure to ambient air pollution and temperature and ex-miRNA profiles.MethodsOur study population consisted of 734 participants in the Normative Aging Study (NAS) between 1999 and 2015. We used high-resolution models to estimate four-week, eight-week, twelve-week, six-month, and one-year moving averages of PM2.5, O3, NO2, and ambient temperature based on geo-coded residential addresses. The outcome of interest was the extracellular microRNA (ex-miRNA) profile of each participant over time. We used a longitudinal quantile regression approach to estimate the association between the exposures and each ex-miRNA. Results were corrected for multiple comparisons and ex-miRNAs that were still significantly associated with the exposures were further analyzed using KEGG pathway analysis and Ingenuity Pathway Analysis.ResultsWe found 151 significant associations between levels of PM2.5, O3, NO2, and ambient temperature and 82 unique ex-miRNAs across multiple quantiles. Most of the significant results were associations with intermediate-term exposure to O3, long-term exposure to PM2.5, and both intermediate and long-term exposure to ambient temperature. The exposures were most often associated with the 75th and 90th percentile of the outcomes. Pathway analyses of significant ex-miRNAs revealed their involvement in biological pathways involving cell function and communication as well as clinical diseases such as cardiovascular disease, respiratory disease, and neurological disease.ConclusionOur results show that intermediate and long-term exposure to all our exposures of interest were associated with changes in the ex-miRNA profile of study participants. Further studies on environmental risk factors and ex-miRNAs are warranted.
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- 2023
50. Total-body PET/CT or LAFOV PET/CT? Axial field-of-view clinical classification
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Mingels, Clemens, Caobelli, Federico, Alavi, Abass, Sachpekidis, Christos, Wang, Meiyun, Nalbant, Hande, Pantel, Austin R., Shi, Hongcheng, Rominger, Axel, and Nardo, Lorenzo
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- 2024
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