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The Cerrado biome, renowned for its biodiversity and threatened by rapid land transformation, encompasses a vast savanna ecosystem in Brazil. The region is characterised by a seasonal climate, influenced by a myriad of meteorological systems creating diverse and non‐homogeneous rainfall regimes across the region. To account for this heterogeneity, we propose a novel classification of the Cerrado using rainfall data to delineate three distinct climatic regions: Eastern, Southern and Central‐West Cerrado. The Eastern region exhibited the driest and most seasonal climate, marked by high vapour pressure deficit (VPD) and predominantly open‐canopy vegetation. Conversely, the Southern region, characterised by lower seasonality, boasts a higher proportion of forest cover and lower mean VPD. The Central‐West region, encompassing diverse landscapes, featured areas with higher precipitation levels, particularly along the Amazônia border. Furthermore, we conducted trend analyses on observed station data and used CMIP6 models to evaluate future scenarios under differing emissions trajectories. While observed trends in mean rainfall were marginal, VPD demonstrated a notable upward trend of approximately 1% annually throughout the biome. Climate models indicated a substantial drying close to the Amazônia border, and wetter conditions in the southeast. All Cerrado regions are anticipated to experience amplified seasonality and VPD, with VPD projected to surge by approximately 30% (60%) under low (high) emissions scenarios by the end of the century. Notably, the transition from the dry to wet season was the most affected. Our study provides critical insights on how the climatic heterogeneity of the Cerrado shapes vegetation structure distribution and how future changes will exacerbate water stress throughout the biome. These findings underscore the importance of understanding climate variability for effective conservation and management strategies in the region. [ABSTRACT FROM AUTHOR]