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2. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn, J, Adkins, S, Agwanda, B, Al Kubrusli, R, Alkhovsky, S, Amarasinghe, G, Avsic-Zupanc, T, Ayllon, M, Bahl, J, Balkema-Buschmann, A, Ballinger, M, Basler, C, Bavari, S, Beer, M, Bejerman, N, Bennett, A, Bente, D, Bergeron, E, Bird, B, Blair, C, Blasdell, K, Blystad, D, Bojko, J, Borth, W, Bradfute, S, Breyta, R, Briese, T, Brown, P, Brown, J, Buchholz, U, Buchmeier, M, Bukreyev, A, Burt, F, Buttner, C, Calisher, C, Cao, M, Casas, I, Chandran, K, Charrel, R, Cheng, Q, Chiaki, Y, Chiapello, M, Choi, I, Ciuffo, M, Clegg, J, Crozier, I, Dal Bo, E, de la Torre, J, de Lamballerie, X, de Swart, R, Debat, H, Dheilly, N, Di Cicco, E, Di Paola, N, Di Serio, F, Dietzgen, R, Digiaro, M, Dolnik, O, Drebot, M, Drexler, J, Dundon, W, Duprex, W, Durrwald, R, Dye, J, Easton, A, Ebihara, H, Elbeaino, T, Ergunay, K, Ferguson, H, Fooks, A, Forgia, M, Formenty, P, Franova, J, Freitas-Astua, J, Fu, J, Furl, S, Gago-Zachert, S, Gao, G, Garcia, M, Garcia-Sastre, A, Garrison, A, Gaskin, T, Gonzalez, J, Griffiths, A, Goldberg, T, Groschup, M, Gunther, S, Hall, R, Hammond, J, Han, T, Hepojoki, J, Hewson, R, Hong, J, Hong, N, Hongo, S, Horie, M, Hu, J, Hu, T, Hughes, H, Huttner, F, Hyndman, T, Ilyas, M, Jalkanen, R, Jiang, D, Jonson, G, Junglen, S, Kadono, F, Kaukinen, K, Kawate, M, Klempa, B, Klingstrom, J, Kobinger, G, Koloniuk, I, Kondo, H, Koonin, E, Krupovic, M, Kubota, K, Kurath, G, Laenen, L, Lambert, A, Langevin, S, Lee, B, Lefkowitz, E, Leroy, E, Li, S, Li, L, Li, J, Liu, H, Lukashevich, I, Maes, P, de Souza, W, Marklewitz, M, Marshall, S, Marzano, S, Massart, S, Mccauley, J, Melzer, M, Mielke-Ehret, N, Miller, K, Ming, T, Mirazimi, A, Mordecai, G, Muhlbach, H, Muhlberger, E, Naidu, R, Natsuaki, T, Navarro, J, Netesov, S, Neumann, G, Nowotny, N, Nunes, M, Olmedo-Velarde, A, Palacios, G, Pallas, V, Palyi, B, Papa, A, Paraskevopoulou, S, Park, A, Parrish, C, Patterson, D, Pauvolid-Correa, A, Paweska, J, Payne, S, Peracchio, C, Perez, D, Postler, T, Qi, L, Radoshitzky, S, Resende, R, Reyes, C, Rima, B, Luna, G, Romanowski, V, Rota, P, Rubbenstroth, D, Rubino, L, Runstadler, J, Sabanadzovic, S, Sall, A, Salvato, M, Sang, R, Sasaya, T, Schulze, A, Schwemmle, M, Shi, M, Shi, X, Shi, Z, Shimomoto, Y, Shirako, Y, Siddell, S, Simmonds, P, Sironi, M, Smagghe, G, Smither, S, Song, J, Spann, K, Spengler, J, Stenglein, M, Stone, D, Sugano, J, Suttle, C, Tabata, A, Takada, A, Takeuchi, S, Tchouassi, D, Teffer, A, Tesh, R, Thornburg, N, Tomitaka, Y, Tomonaga, K, Tordo, N, Torto, B, Towner, J, Tsuda, S, Tu, C, Turina, M, Tzanetakis, I, Uchida, J, Usugi, T, Vaira, A, Vallino, M, van den Hoogen, B, Varsani, A, Vasilakis, N, Verbeek, M, von Bargen, S, Wada, J, Wahl, V, Walker, P, Wang, L, Wang, G, Wang, Y, Waqas, M, Wei, T, Wen, S, Whitfield, A, Williams, J, Wolf, Y, Wu, J, Xu, L, Yanagisawa, H, Yang, C, Yang, Z, Zerbini, F, Zhai, L, Zhang, Y, Zhang, S, Zhang, J, Zhang, Z, Zhou, X, Kuhn JH, Adkins S, Agwanda BR, Al Kubrusli R, Alkhovsky SV, Amarasinghe GK, Avsic-Zupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Basler CF, Bavari S, Beer M, Bejerman N, Bennett AJ, Bente DA, Bergeron E, Bird BH, Blair CD, Blasdell KR, Blystad DR, Bojko J, Borth WB, Bradfute S, Breyta R, Briese T, Brown PA, Brown JK, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buttner C, Calisher CH, Cao MJ, Casas I, Chandran K, Charrel RN, Cheng Q, Chiaki Y, Chiapello M, Choi I, Ciuffo M, Clegg JCS, Crozier I, Dal Bo E, de la Torre JC, de Lamballerie X, de Swart RL, Debat H, Dheilly NM, Di Cicco E, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolnik O, Drebot MA, Drexler JF, Dundon WG, Duprex WP, Durrwald R, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Ferguson HW, Fooks AR, Forgia M, Formenty PBH, Franova J, Freitas-Astua J, Fu JJ, Furl S, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gaskin T, Gonzalez JPJ, Griffiths A, Goldberg TL, Groschup MH, Gunther S, Hall RA, Hammond J, Han T, Hepojoki J, Hewson R, Hong J, Hong N, Hongo S, Horie M, Hu JS, Hu T, Hughes HR, Huttner F, Hyndman TH, Ilyas M, Jalkanen R, Jiang DH, Jonson GB, Junglen S, Kadono F, Kaukinen KH, Kawate M, Klempa B, Klingstrom J, Kobinger G, Koloniuk I, Kondo H, Koonin EV, Krupovic M, Kubota K, Kurath G, Laenen L, Lambert AJ, Langevin SL, Lee B, Lefkowitz EJ, Leroy EM, Li SR, Li LH, Li JR, Liu HZ, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Marzano SYL, Massart S, McCauley JW, Melzer M, Mielke-Ehret N, Miller KM, Ming TJ, Mirazimi A, Mordecai GJ, Muhlbach HP, Muhlberger E, Naidu R, Natsuaki T, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Olmedo-Velarde A, Palacios G, Pallas V, Palyi B, Papa A, Paraskevopoulou S, Park AC, Parrish CR, Patterson DA, Pauvolid-Correa A, Paweska JT, Payne S, Peracchio C, Perez DR, Postler TS, Qi LY, Radoshitzky SR, Resende RO, Reyes CA, Rima BK, Luna GR, Romanowski V, Rota P, Rubbenstroth D, Rubino L, Runstadler JA, Sabanadzovic S, Sall AA, Salvato MS, Sang RS, Sasaya T, Schulze AD, Schwemmle M, Shi M, Shi XH, Shi ZL, Shimomoto Y, Shirako Y, Siddell SG, Simmonds P, Sironi M, Smagghe G, Smither S, Song JW, Spann K, Spengler JR, Stenglein MD, Stone DM, Sugano J, Suttle CA, Tabata A, Takada A, Takeuchi S, Tchouassi DP, Teffer A, Tesh RB, Thornburg NJ, Tomitaka Y, Tomonaga K, Tordo N, Torto B, Towner JS, Tsuda S, Tu CC, Turina M, Tzanetakis IE, Uchida J, Usugi T, Vaira AM, Vallino M, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, von Bargen S, Wada J, Wahl V, Walker PJ, Wang LF, Wang GP, Wang YX, Wang YQ, Waqas M, Wei TY, Wen SH, Whitfield AE, Williams JV, Wolf YI, Wu JX, Xu L, Yanagisawa H, Yang CX, Yang ZK, Zerbini FM, Zhai L, Zhang YZ, Zhang S, Zhang JG, Zhang Z, Zhou XP, Kuhn, J, Adkins, S, Agwanda, B, Al Kubrusli, R, Alkhovsky, S, Amarasinghe, G, Avsic-Zupanc, T, Ayllon, M, Bahl, J, Balkema-Buschmann, A, Ballinger, M, Basler, C, Bavari, S, Beer, M, Bejerman, N, Bennett, A, Bente, D, Bergeron, E, Bird, B, Blair, C, Blasdell, K, Blystad, D, Bojko, J, Borth, W, Bradfute, S, Breyta, R, Briese, T, Brown, P, Brown, J, Buchholz, U, Buchmeier, M, Bukreyev, A, Burt, F, Buttner, C, Calisher, C, Cao, M, Casas, I, Chandran, K, Charrel, R, Cheng, Q, Chiaki, Y, Chiapello, M, Choi, I, Ciuffo, M, Clegg, J, Crozier, I, Dal Bo, E, de la Torre, J, de Lamballerie, X, de Swart, R, Debat, H, Dheilly, N, Di Cicco, E, Di Paola, N, Di Serio, F, Dietzgen, R, Digiaro, M, Dolnik, O, Drebot, M, Drexler, J, Dundon, W, Duprex, W, Durrwald, R, Dye, J, Easton, A, Ebihara, H, Elbeaino, T, Ergunay, K, Ferguson, H, Fooks, A, Forgia, M, Formenty, P, Franova, J, Freitas-Astua, J, Fu, J, Furl, S, Gago-Zachert, S, Gao, G, Garcia, M, Garcia-Sastre, A, Garrison, A, Gaskin, T, Gonzalez, J, Griffiths, A, Goldberg, T, Groschup, M, Gunther, S, Hall, R, Hammond, J, Han, T, Hepojoki, J, Hewson, R, Hong, J, Hong, N, Hongo, S, Horie, M, Hu, J, Hu, T, Hughes, H, Huttner, F, Hyndman, T, Ilyas, M, Jalkanen, R, Jiang, D, Jonson, G, Junglen, S, Kadono, F, Kaukinen, K, Kawate, M, Klempa, B, Klingstrom, J, Kobinger, G, Koloniuk, I, Kondo, H, Koonin, E, Krupovic, M, Kubota, K, Kurath, G, Laenen, L, Lambert, A, Langevin, S, Lee, B, Lefkowitz, E, Leroy, E, Li, S, Li, L, Li, J, Liu, H, Lukashevich, I, Maes, P, de Souza, W, Marklewitz, M, Marshall, S, Marzano, S, Massart, S, Mccauley, J, Melzer, M, Mielke-Ehret, N, Miller, K, Ming, T, Mirazimi, A, Mordecai, G, Muhlbach, H, Muhlberger, E, Naidu, R, Natsuaki, T, Navarro, J, Netesov, S, Neumann, G, Nowotny, N, Nunes, M, Olmedo-Velarde, A, Palacios, G, Pallas, V, Palyi, B, Papa, A, Paraskevopoulou, S, Park, A, Parrish, C, Patterson, D, Pauvolid-Correa, A, Paweska, J, Payne, S, Peracchio, C, Perez, D, Postler, T, Qi, L, Radoshitzky, S, Resende, R, Reyes, C, Rima, B, Luna, G, Romanowski, V, Rota, P, Rubbenstroth, D, Rubino, L, Runstadler, J, Sabanadzovic, S, Sall, A, Salvato, M, Sang, R, Sasaya, T, Schulze, A, Schwemmle, M, Shi, M, Shi, X, Shi, Z, Shimomoto, Y, Shirako, Y, Siddell, S, Simmonds, P, Sironi, M, Smagghe, G, Smither, S, Song, J, Spann, K, Spengler, J, Stenglein, M, Stone, D, Sugano, J, Suttle, C, Tabata, A, Takada, A, Takeuchi, S, Tchouassi, D, Teffer, A, Tesh, R, Thornburg, N, Tomitaka, Y, Tomonaga, K, Tordo, N, Torto, B, Towner, J, Tsuda, S, Tu, C, Turina, M, Tzanetakis, I, Uchida, J, Usugi, T, Vaira, A, Vallino, M, van den Hoogen, B, Varsani, A, Vasilakis, N, Verbeek, M, von Bargen, S, Wada, J, Wahl, V, Walker, P, Wang, L, Wang, G, Wang, Y, Waqas, M, Wei, T, Wen, S, Whitfield, A, Williams, J, Wolf, Y, Wu, J, Xu, L, Yanagisawa, H, Yang, C, Yang, Z, Zerbini, F, Zhai, L, Zhang, Y, Zhang, S, Zhang, J, Zhang, Z, Zhou, X, Kuhn JH, Adkins S, Agwanda BR, Al Kubrusli R, Alkhovsky SV, Amarasinghe GK, Avsic-Zupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Basler CF, Bavari S, Beer M, Bejerman N, Bennett AJ, Bente DA, Bergeron E, Bird BH, Blair CD, Blasdell KR, Blystad DR, Bojko J, Borth WB, Bradfute S, Breyta R, Briese T, Brown PA, Brown JK, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buttner C, Calisher CH, Cao MJ, Casas I, Chandran K, Charrel RN, Cheng Q, Chiaki Y, Chiapello M, Choi I, Ciuffo M, Clegg JCS, Crozier I, Dal Bo E, de la Torre JC, de Lamballerie X, de Swart RL, Debat H, Dheilly NM, Di Cicco E, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolnik O, Drebot MA, Drexler JF, Dundon WG, Duprex WP, Durrwald R, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Ferguson HW, Fooks AR, Forgia M, Formenty PBH, Franova J, Freitas-Astua J, Fu JJ, Furl S, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gaskin T, Gonzalez JPJ, Griffiths A, Goldberg TL, Groschup MH, Gunther S, Hall RA, Hammond J, Han T, Hepojoki J, Hewson R, Hong J, Hong N, Hongo S, Horie M, Hu JS, Hu T, Hughes HR, Huttner F, Hyndman TH, Ilyas M, Jalkanen R, Jiang DH, Jonson GB, Junglen S, Kadono F, Kaukinen KH, Kawate M, Klempa B, Klingstrom J, Kobinger G, Koloniuk I, Kondo H, Koonin EV, Krupovic M, Kubota K, Kurath G, Laenen L, Lambert AJ, Langevin SL, Lee B, Lefkowitz EJ, Leroy EM, Li SR, Li LH, Li JR, Liu HZ, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Marzano SYL, Massart S, McCauley JW, Melzer M, Mielke-Ehret N, Miller KM, Ming TJ, Mirazimi A, Mordecai GJ, Muhlbach HP, Muhlberger E, Naidu R, Natsuaki T, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Olmedo-Velarde A, Palacios G, Pallas V, Palyi B, Papa A, Paraskevopoulou S, Park AC, Parrish CR, Patterson DA, Pauvolid-Correa A, Paweska JT, Payne S, Peracchio C, Perez DR, Postler TS, Qi LY, Radoshitzky SR, Resende RO, Reyes CA, Rima BK, Luna GR, Romanowski V, Rota P, Rubbenstroth D, Rubino L, Runstadler JA, Sabanadzovic S, Sall AA, Salvato MS, Sang RS, Sasaya T, Schulze AD, Schwemmle M, Shi M, Shi XH, Shi ZL, Shimomoto Y, Shirako Y, Siddell SG, Simmonds P, Sironi M, Smagghe G, Smither S, Song JW, Spann K, Spengler JR, Stenglein MD, Stone DM, Sugano J, Suttle CA, Tabata A, Takada A, Takeuchi S, Tchouassi DP, Teffer A, Tesh RB, Thornburg NJ, Tomitaka Y, Tomonaga K, Tordo N, Torto B, Towner JS, Tsuda S, Tu CC, Turina M, Tzanetakis IE, Uchida J, Usugi T, Vaira AM, Vallino M, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, von Bargen S, Wada J, Wahl V, Walker PJ, Wang LF, Wang GP, Wang YX, Wang YQ, Waqas M, Wei TY, Wen SH, Whitfield AE, Williams JV, Wolf YI, Wu JX, Xu L, Yanagisawa H, Yang CX, Yang ZK, Zerbini FM, Zhai L, Zhang YZ, Zhang S, Zhang JG, Zhang Z, and Zhou XP

Abstract

In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.

Published
2021

3. 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn, J, Adkins, S, Alioto, D, Alkhovsky, S, Amarasinghe, G, Anthony, S, Avsic-Aupanc, T, Ayllon, M, Bahl, J, Balkema-Buschmann, A, Ballinger, M, Bartonicka, T, Basler, C, Bavari, S, Beer, M, Bente, D, Bergeron, E, Bird, B, Blair, C, Blasdell, K, Bradfute, S, Breyta, R, Briese, T, Brown, P, Buchholz, U, Buchmeier, M, Bukreyev, A, Burt, F, Buzkan, N, Calisher, C, Cao, M, Casas, I, Chamberlain, J, Chandran, K, Charrel, R, Chen, B, Chiumenti, M, Choi, I, Clegg, J, Crozier, I, da Graca, J, Dal Bo, E, Davila, A, de la Torre, J, de Lamballerie, X, de Swart, R, Di Bello, P, Di Paola, N, Di Serio, F, Dietzgen, R, Digiaro, M, Dolja, V, Dolnik, O, Drebot, M, Drexler, J, Durrwald, R, Dufkova, L, Dundon, W, Duprex, W, Dye, J, Easton, A, Ebihara, H, Elbeaino, T, Ergunay, K, Fernandes, J, Fooks, A, Formenty, P, Forth, L, Fouchier, R, Freitas-Astua, J, Gago-Zachert, S, Gao, G, Garcia, M, Garcia-Sastre, A, Garrison, A, Gbakima, A, Goldstein, T, Gonzalez, J, Griffiths, A, Groschup, M, Gunther, S, Guterres, A, Hall, R, Hammond, J, Hassan, M, Hepojoki, J, Hepojoki, S, Hetzel, U, Hewson, R, Hoffmann, B, Hongo, S, Hoper, D, Horie, M, Hughes, H, Hyndman, T, Jambai, A, Jardim, R, Jiang, D, Jin, Q, Jonson, G, Junglen, S, Karadag, S, Keller, K, Klempa, B, Klingstrom, J, Kobinger, G, Kondo, H, Koonin, E, Krupovic, M, Kurath, G, Kuzmin, I, Laenen, L, Lamb, R, Lambert, A, Langevin, S, Lee, B, Lemos, E, Leroy, E, Li, D, Li, J, Liang, M, Liu, W, Liu, Y, Lukashevich, I, Maes, P, de Souza, W, Marklewitz, M, Marshall, S, Martelli, G, Martin, R, Marzano, S, Massart, S, Mccauley, J, Mielke-Ehret, N, Minafra, A, Minutolo, M, Mirazimi, A, Muhlbach, H, Muhlberger, E, Naidu, R, Natsuaki, T, Navarro, B, Navarro, J, Netesov, S, Neumann, G, Nowotny, N, Nunes, M, Nylund, A, Okland, A, Oliveira, R, Palacios, G, Pallas, V, Palyi, B, Papa, A, Parrish, C, Pauvolid-Correa, A, Paweska, J, Payne, S, Perez, D, Pfaff, F, Radoshitzky, S, Aziz-ul, R, Ramos-Gonzalez, P, Resende, R, Reyes, C, Rima, B, Romanowski, V, Luna, G, Rota, P, Rubbenstroth, D, Runstadler, J, Ruzek, D, Sabanadzovic, S, Salat, J, Sall, A, Salvato, M, Sarpkaya, K, Sasaya, T, Schwemmle, M, Shabbir, M, Shi, X, Shi, Z, Shirako, Y, Simmonds, P, Sirmarovaa, J, Sironi, M, Smither, S, Smura, T, Song, J, Spann, K, Spengler, J, Stenglein, M, Stone, D, Strakova, P, Takada, A, Tesh, R, Thornburg, N, Tomonaga, K, Tordo, N, Towner, J, Turina, M, Tzanetakis, I, Ulrich, R, Vaira, A, van den Hoogen, B, Varsani, A, Vasilakis, N, Verbeek, M, Wahl, V, Walker, P, Wang, H, Wang, J, Wang, X, Wang, L, Wei, T, Wells, H, Whitfield, A, Williams, J, Wolf, Y, Wu, Z, Yang, X, Yu, X, Yutin, N, Zerbini, F, Zhang, T, Zhang, Y, Zhou, G, Zhou, X, Kuhn JH, Adkins S, Alioto D, Alkhovsky SV, Amarasinghe GK, Anthony SJ, Avsic-Aupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Bartonicka T, Basler C, Bavari S, Beer M, Bente DA, Bergeron E, Bird BH, Blair C, Blasdell KR, Bradfute SB, Breyta R, Briese T, Brown PA, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buzkan N, Calisher CH, Cao MJ, Casas I, Chamberlain J, Chandran K, Charrel RN, Chen B, Chiumenti M, Choi I, Clegg JCS, Crozier I, da Graca JV, Dal Bo E, Davila AMR, de la Torre JC, de Lamballerie X, de Swart RL, Di Bello PL, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolja VV, Dolnik O, Drebot MA, Drexler JF, Durrwald R, Dufkova L, Dundon WG, Duprex WP, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Fernandes J, Fooks AR, Formenty PBH, Forth LF, Fouchier RAM, Freitas-Astua J, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gbakima A, Goldstein T, Gonzalez JPJ, Griffiths A, Groschup MH, Gunther S, Guterres A, Hall RA, Hammond J, Hassan M, Hepojoki J, Hepojoki S, Hetzel U, Hewson R, Hoffmann B, Hongo S, Hoper D, Horie M, Hughes HR, Hyndman TH, Jambai A, Jardim R, Jiang DH, Jin Q, Jonson GB, Junglen S, Karadag S, Keller KE, Klempa B, Klingstrom J, Kobinger G, Kondo H, Koonin EV, Krupovic M, Kurath G, Kuzmin IV, Laenen L, Lamb RA, Lambert AJ, Langevin SL, Lee BH, Lemos ERS, Leroy EM, Li DX, Li JR, Liang MF, Liu WW, Liu Y, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Martelli GP, Martin RR, Marzano SYL, Massart S, McCauley JW, Mielke-Ehret N, Minafra A, Minutolo M, Mirazimi A, Muhlbach HP, Muhlberger E, Naidu R, Natsuaki T, Navarro B, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Nylund A, Okland AL, Oliveira RC, Palacios G, Pallas V, Palyi B, Papa A, Parrish CR, Pauvolid-Correa A, Paweska JT, Payne S, Perez DR, Pfaff F, Radoshitzky SR, Aziz-ul Rahman, Ramos-Gonzalez PL, Resende RO, Reyes CA, Rima BK, Romanowski V, Luna GR, Rota P, Rubbenstroth D, Runstadler JA, Ruzek D, Sabanadzovic S, Salat J, Sall AA, Salvato MS, Sarpkaya K, Sasaya T, Schwemmle M, Shabbir MZ, Shi XH, Shi ZL, Shirako Y, Simmonds P, Sirmarovaa J, Sironi M, Smither S, Smura T, Song JW, Spann KM, Spengler JR, Stenglein MD, Stone DM, Strakova P, Takada A, Tesh RB, Thornburg NJ, Tomonaga K, Tordo N, Towner JS, Turina M, Tzanetakis I, Ulrich RG, Vaira AM, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, Wahl V, Walker PJ, Wang H, Wang JW, Wang XF, Wang LF, Wei TY, Wells H, Whitfield AE, Williams JV, Wolf YI, Wu ZQ, Yang X, Yu XJ, Yutin N, Zerbini FM, Zhang T, Zhang YZ, Zhou GH, Zhou XP, Kuhn, J, Adkins, S, Alioto, D, Alkhovsky, S, Amarasinghe, G, Anthony, S, Avsic-Aupanc, T, Ayllon, M, Bahl, J, Balkema-Buschmann, A, Ballinger, M, Bartonicka, T, Basler, C, Bavari, S, Beer, M, Bente, D, Bergeron, E, Bird, B, Blair, C, Blasdell, K, Bradfute, S, Breyta, R, Briese, T, Brown, P, Buchholz, U, Buchmeier, M, Bukreyev, A, Burt, F, Buzkan, N, Calisher, C, Cao, M, Casas, I, Chamberlain, J, Chandran, K, Charrel, R, Chen, B, Chiumenti, M, Choi, I, Clegg, J, Crozier, I, da Graca, J, Dal Bo, E, Davila, A, de la Torre, J, de Lamballerie, X, de Swart, R, Di Bello, P, Di Paola, N, Di Serio, F, Dietzgen, R, Digiaro, M, Dolja, V, Dolnik, O, Drebot, M, Drexler, J, Durrwald, R, Dufkova, L, Dundon, W, Duprex, W, Dye, J, Easton, A, Ebihara, H, Elbeaino, T, Ergunay, K, Fernandes, J, Fooks, A, Formenty, P, Forth, L, Fouchier, R, Freitas-Astua, J, Gago-Zachert, S, Gao, G, Garcia, M, Garcia-Sastre, A, Garrison, A, Gbakima, A, Goldstein, T, Gonzalez, J, Griffiths, A, Groschup, M, Gunther, S, Guterres, A, Hall, R, Hammond, J, Hassan, M, Hepojoki, J, Hepojoki, S, Hetzel, U, Hewson, R, Hoffmann, B, Hongo, S, Hoper, D, Horie, M, Hughes, H, Hyndman, T, Jambai, A, Jardim, R, Jiang, D, Jin, Q, Jonson, G, Junglen, S, Karadag, S, Keller, K, Klempa, B, Klingstrom, J, Kobinger, G, Kondo, H, Koonin, E, Krupovic, M, Kurath, G, Kuzmin, I, Laenen, L, Lamb, R, Lambert, A, Langevin, S, Lee, B, Lemos, E, Leroy, E, Li, D, Li, J, Liang, M, Liu, W, Liu, Y, Lukashevich, I, Maes, P, de Souza, W, Marklewitz, M, Marshall, S, Martelli, G, Martin, R, Marzano, S, Massart, S, Mccauley, J, Mielke-Ehret, N, Minafra, A, Minutolo, M, Mirazimi, A, Muhlbach, H, Muhlberger, E, Naidu, R, Natsuaki, T, Navarro, B, Navarro, J, Netesov, S, Neumann, G, Nowotny, N, Nunes, M, Nylund, A, Okland, A, Oliveira, R, Palacios, G, Pallas, V, Palyi, B, Papa, A, Parrish, C, Pauvolid-Correa, A, Paweska, J, Payne, S, Perez, D, Pfaff, F, Radoshitzky, S, Aziz-ul, R, Ramos-Gonzalez, P, Resende, R, Reyes, C, Rima, B, Romanowski, V, Luna, G, Rota, P, Rubbenstroth, D, Runstadler, J, Ruzek, D, Sabanadzovic, S, Salat, J, Sall, A, Salvato, M, Sarpkaya, K, Sasaya, T, Schwemmle, M, Shabbir, M, Shi, X, Shi, Z, Shirako, Y, Simmonds, P, Sirmarovaa, J, Sironi, M, Smither, S, Smura, T, Song, J, Spann, K, Spengler, J, Stenglein, M, Stone, D, Strakova, P, Takada, A, Tesh, R, Thornburg, N, Tomonaga, K, Tordo, N, Towner, J, Turina, M, Tzanetakis, I, Ulrich, R, Vaira, A, van den Hoogen, B, Varsani, A, Vasilakis, N, Verbeek, M, Wahl, V, Walker, P, Wang, H, Wang, J, Wang, X, Wang, L, Wei, T, Wells, H, Whitfield, A, Williams, J, Wolf, Y, Wu, Z, Yang, X, Yu, X, Yutin, N, Zerbini, F, Zhang, T, Zhang, Y, Zhou, G, Zhou, X, Kuhn JH, Adkins S, Alioto D, Alkhovsky SV, Amarasinghe GK, Anthony SJ, Avsic-Aupanc T, Ayllon MA, Bahl J, Balkema-Buschmann A, Ballinger MJ, Bartonicka T, Basler C, Bavari S, Beer M, Bente DA, Bergeron E, Bird BH, Blair C, Blasdell KR, Bradfute SB, Breyta R, Briese T, Brown PA, Buchholz UJ, Buchmeier MJ, Bukreyev A, Burt F, Buzkan N, Calisher CH, Cao MJ, Casas I, Chamberlain J, Chandran K, Charrel RN, Chen B, Chiumenti M, Choi I, Clegg JCS, Crozier I, da Graca JV, Dal Bo E, Davila AMR, de la Torre JC, de Lamballerie X, de Swart RL, Di Bello PL, Di Paola N, Di Serio F, Dietzgen RG, Digiaro M, Dolja VV, Dolnik O, Drebot MA, Drexler JF, Durrwald R, Dufkova L, Dundon WG, Duprex WP, Dye JM, Easton AJ, Ebihara H, Elbeaino T, Ergunay K, Fernandes J, Fooks AR, Formenty PBH, Forth LF, Fouchier RAM, Freitas-Astua J, Gago-Zachert S, Gao GF, Garcia ML, Garcia-Sastre A, Garrison AR, Gbakima A, Goldstein T, Gonzalez JPJ, Griffiths A, Groschup MH, Gunther S, Guterres A, Hall RA, Hammond J, Hassan M, Hepojoki J, Hepojoki S, Hetzel U, Hewson R, Hoffmann B, Hongo S, Hoper D, Horie M, Hughes HR, Hyndman TH, Jambai A, Jardim R, Jiang DH, Jin Q, Jonson GB, Junglen S, Karadag S, Keller KE, Klempa B, Klingstrom J, Kobinger G, Kondo H, Koonin EV, Krupovic M, Kurath G, Kuzmin IV, Laenen L, Lamb RA, Lambert AJ, Langevin SL, Lee BH, Lemos ERS, Leroy EM, Li DX, Li JR, Liang MF, Liu WW, Liu Y, Lukashevich IS, Maes P, de Souza WM, Marklewitz M, Marshall SH, Martelli GP, Martin RR, Marzano SYL, Massart S, McCauley JW, Mielke-Ehret N, Minafra A, Minutolo M, Mirazimi A, Muhlbach HP, Muhlberger E, Naidu R, Natsuaki T, Navarro B, Navarro JA, Netesov SV, Neumann G, Nowotny N, Nunes MRT, Nylund A, Okland AL, Oliveira RC, Palacios G, Pallas V, Palyi B, Papa A, Parrish CR, Pauvolid-Correa A, Paweska JT, Payne S, Perez DR, Pfaff F, Radoshitzky SR, Aziz-ul Rahman, Ramos-Gonzalez PL, Resende RO, Reyes CA, Rima BK, Romanowski V, Luna GR, Rota P, Rubbenstroth D, Runstadler JA, Ruzek D, Sabanadzovic S, Salat J, Sall AA, Salvato MS, Sarpkaya K, Sasaya T, Schwemmle M, Shabbir MZ, Shi XH, Shi ZL, Shirako Y, Simmonds P, Sirmarovaa J, Sironi M, Smither S, Smura T, Song JW, Spann KM, Spengler JR, Stenglein MD, Stone DM, Strakova P, Takada A, Tesh RB, Thornburg NJ, Tomonaga K, Tordo N, Towner JS, Turina M, Tzanetakis I, Ulrich RG, Vaira AM, van den Hoogen B, Varsani A, Vasilakis N, Verbeek M, Wahl V, Walker PJ, Wang H, Wang JW, Wang XF, Wang LF, Wei TY, Wells H, Whitfield AE, Williams JV, Wolf YI, Wu ZQ, Yang X, Yu XJ, Yutin N, Zerbini FM, Zhang T, Zhang YZ, Zhou GH, and Zhou XP

Abstract

In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. At the genus rank, 20 new genera were added, two were deleted, one was moved, and three were renamed. At the species rank, 160 species were added, four were deleted, ten were moved and renamed, and 30 species were renamed. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV.

Published
2020

4. Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author

Kuhn J.H., Adkins S., Agwanda B.R., Al Kubrusli R., Alkhovsky S.V., Amarasinghe G.K., Avsic-Zupanc T., Ayllon M.A., Bahl J., Balkema-Buschmann A., Ballinger M.J., Basler C.F., Bavari S., Beer M., Bejerman N., Bennett A.J., Bente D.A., Bergeron E., Bird B.H., Blair C.D., Blasdell K.R., Blystad D.-R., Bojko J., Borth W.B., Bradfute S., Breyta R., Briese T., Brown P.A., Brown J.K., Buchholz U.J., Buchmeier M.J., Bukreyev A., Burt F., Buttner C., Calisher C.H., Cao M., Casas I., Chandran K., Charrel R.N., Cheng Q., Chiaki Y., Chiapello M., Choi I.-R., Ciuffo M., Clegg J.C.S., Crozier I., Dal Bo E., de la Torre J.C., de Lamballerie X., de Swart R.L., Debat H., Dheilly N.M., Di Cicco E., Di Paola N., Di Serio F., Dietzgen R.G., Digiaro M., Dolnik O., Drebot M.A., Drexler J.F., Dundon W.G., Duprex W.P., Durrwald R., Dye J.M., Easton A.J., Ebihara H., Elbeaino T., Ergunay K., Ferguson H.W., Fooks A.R., Forgia M., Formenty P.B.H., Franova J., Freitas-Astua J., Fu J., Furl S., Gago-Zachert S., Gao G.F., Garcia M.L., Garcia-Sastre A., Garrison A.R., Gaskin T., Gonzalez J.-P.J., Griffiths A., Goldberg T.L., Groschup M.H., Gunther S., Hall R.A., Hammond J., Han T., Hepojoki J., Hewson R., Hong J., Hong N., Hongo S., Horie M., Hu J.S., Hu T., Hughes H.R., Huttner F., Hyndman T.H., Ilyas M., Jalkanen R., Jiang D., Jonson G.B., Junglen S., Kadono F., Kaukinen K.H., Kawate M., Klempa B., Klingstrom J., Kobinger G., Koloniuk I., Kondo H., Koonin E.V., Krupovic M., Kubota K., Kurath G., Laenen L., Lambert A.J., Langevin S.L., Lee B., Lefkowitz E.J., Leroy E.M., Li S., Li L., Li J., Liu H., Lukashevich I.S., Maes P., de Souza W.M., Marklewitz M., Marshall S.H., Marzano S.-Y.L., Massart S., McCauley J.W., Melzer M., Mielke-Ehret N., Miller K.M., Ming T.J., Mirazimi A., Mordecai G.J., Muhlbach H.-P., Muhlberger E., Naidu R., Natsuaki T., Navarro J.A., Netesov S.V., Neumann G., Nowotny N., Nunes M.R.T., Olmedo-Velarde A., Palacios G., Pallas V., Palyi B., Papa A., Paraskevopoulou S., Park A.C., Parrish C.R., Patterson D.A., Pauvolid-Correa A., Paweska J.T., Payne S., Peracchio C., Perez D.R., Postler T.S., Qi L., Radoshitzky S.R., Resende R.O., Reyes C.A., Rima B.K., Luna G.R., Romanowski V., Rota P., Rubbenstroth D., Rubino L., Runstadler J.A., Sabanadzovic S., Sall A.A., Salvato M.S., Sang R., Sasaya T., Schulze A.D., Schwemmle M., Shi M., Shi X., Shi Z., Shimomoto Y., Shirako Y., Siddell S.G., Simmonds P., Sironi M., Smagghe G., Smither S., Song J.-W., Spann K., Spengler J.R., Stenglein M.D., Stone D.M., Sugano J., Suttle C.A., Tabata A., Takada A., Takeuchi S., Tchouassi D.P., Teffer A., Tesh R.B., Thornburg N.J., Tomitaka Y., Tomonaga K., Tordo N., Torto B., Towner J.S., Tsuda S., Tu C., Turina M., Tzanetakis I.E., Uchida J., Usugi T., Vaira A.M., Vallino M., van den Hoogen B., Varsani A., Vasilakis N., Verbeek M., von Bargen S., Wada J., Wahl V., Walker P.J., Wang L.-F., Wang G., Wang Y., Waqas M., Wei T., Wen S., Whitfield A.E., Williams J.V., Wolf Y.I., Wu J., Xu L., Yanagisawa H., Yang C., Yang Z., Zerbini F.M., Zhai L., Zhang Y.-Z., Zhang S., Zhang J., Zhang Z., and Zhou X.

Subjects
Virus classification, Negative-stranded RNA viruses
Abstract

In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratifcation vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/ or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV

Published
2021

5. The contribution of the European high containment laboratories during the 2014–2015 Ebola Virus Disease emergency

Author

Nisii, C., Vincenti, D., Fusco, F.M., Schmidt-Chanasit, J., Carbonnelle, C., Raoul, H., Eickmann, M., Hewson, R., Brave, A., Nuncio, S., Sanchez-Seco, M.P., Palyi, B., Kis, Z., Zange, S., Nitsche, A., Kurth, A., Strasser, M., Capobianchi, M.R., Ozin, A., Guglielmetti, P., Menel-Lemos, C., Jacob, D., Grunow, R., Ippolito, G., and Di Caro, A.

Published
2017
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6. Determining the effect of different environmental conditions on Ebola virus viability in clinically relevant specimens.

Author

Palyi B, Magyar N, Henczko J, Szalai B, Farkas A, Strecker T, Takacs M, and Kis Z

Subjects
Clinical Laboratory Techniques statistics & numerical data, Disease Outbreaks prevention & control, Ebolavirus genetics, Hemorrhagic Fever, Ebola diagnosis, Hemorrhagic Fever, Ebola virology, Humans, RNA, Viral isolation & purification, Ebolavirus physiology, Environment, Microbial Viability, Specimen Handling, Temperature
Abstract

In 2013-2016, West Africa experienced the largest and longest Ebola virus disease outbreak ever documented. The wide geographic spread and magnitude of the outbreak often limited the timely and rapid testing of diagnostic samples from patients with suspected Ebola virus disease, raising questions regarding the optimal storage and shipping conditions of clinically relevant specimens, including EDTA-whole blood, plasma, capillary blood, urine and seminal fluid (associated with sexual transmission of the Ebola virus after recovery from the disease). Therefore, the aim of our study was to identify the extent to which storage temperature and clinical specimen type influence Ebola virus viability. Virus infectivity was determined using a fluorescent focus-forming assay. In our study, we show that Ebola virus was the most stable in EDTA-whole blood and plasma samples, whereas rapid decay of infectivity was observed in simulated capillary blood, urine and semen samples, especially when these samples were stored at higher temperatures. The analysis of variance results demonstrated that both temperature and clinical specimen type have significant effects on virus viability, whereas donor differences were not observed. Repeated freeze and thaw cycles of the samples also had a notable impact on virus viability in EDTA-whole blood and urine. Due to the rapid temperature- and specimen-dependent degradation of the virus observed here, our study highlights the importance of proper clinical sample storage at low temperatures during transportation and laboratory analysis.

Published
2018
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7. Field Evaluation of Capillary Blood Samples as a Collection Specimen for the Rapid Diagnosis of Ebola Virus Infection During an Outbreak Emergency.

Author

Strecker T, Palyi B, Ellerbrok H, Jonckheere S, de Clerck H, Bore JA, Gabriel M, Stoecker K, Eickmann M, van Herp M, Formenty P, Di Caro A, and Becker S

Subjects
Adolescent, Adult, Aged, Aged, 80 and over, Blood Specimen Collection standards, Child, Child, Preschool, Emergencies, Feasibility Studies, Female, Guinea, Humans, Infant, Male, Middle Aged, Reverse Transcriptase Polymerase Chain Reaction standards, Sensitivity and Specificity, Young Adult, Blood Specimen Collection methods, Disease Outbreaks, Hemorrhagic Fever, Ebola diagnosis, RNA, Viral blood, Reverse Transcriptase Polymerase Chain Reaction methods
Abstract

Background: Reliable reverse transcription polymerase chain reaction (RT-PCR)-based diagnosis of Ebola virus infection currently requires a blood sample obtained by intravenous puncture. During the current Ebola outbreak in Guinea, we evaluated the usability of capillary blood samples collected from fingersticks of patients suspected of having Ebola virus disease (EVD) for field diagnostics during an outbreak emergency., Methods: A total of 120 venous and capillary blood samples were collected from 53 patients admitted to the Ebola Treatment Centre in Guéckédou, Guinea, between July and August 2014. All sample specimens were analyzed by RT-PCR using the RealStar Filovirus Screen RT-PCR Kit 1.0 from altona Diagnostics (Germany). We compared samples obtained by venipuncture and those obtained by capillary blood sampling absorbed onto swab devices., Results: The resulting sensitivity and specificity of tests performed with capillary blood samples were 86.8% (95% confidence interval [CI], 71.9%-95.6%; 33/38 patients) and 100% (95% CI, 84.6%-100%; 22/22 patients), respectively., Conclusions: Our data suggest that capillary blood samples could serve as an alternative to venous blood samples for the diagnosis of EVD in resource-limited settings during a crisis. This can be of particular advantage in cases when venipuncture is difficult to perform-for example, with newborns and infants or when adult patients reject venipuncture for cultural or religious reasons., (© The Author 2015. Published by Oxford University Press on behalf of the Infectious Diseases Society of America.)

Published
2015
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8. Endotoxins do not influence transplacental transmission of lymphotropic human herpesviruses and human papillomaviruses into amniotic fluid taken from healthy mothers before parturition in Hungary.

Author

Younes SA, Csire M, Palyi B, Mikala G, Vályi-Nagy I, Cseh I, Benczik M, Jeney C, Takács T, Simon E, Fülöp V, Berencsi G, Fekete G, and Visy M

Subjects
Amniotic Fluid chemistry, Blood virology, Female, Herpesviridae classification, Herpesviridae isolation & purification, Herpesviridae Infections virology, Humans, Hungary epidemiology, Infant, Low Birth Weight, Infant, Newborn, Male, Papillomaviridae classification, Papillomaviridae isolation & purification, Papillomavirus Infections virology, Parturition, Pregnancy, Pregnancy Complications, Infectious virology, Amniotic Fluid virology, Endotoxins analysis, Herpesviridae Infections epidemiology, Infectious Disease Transmission, Vertical, Papillomavirus Infections epidemiology, Placenta virology, Pregnancy Complications, Infectious epidemiology
Abstract

Pregnant women were examined following healthy pregnancies at term. Amniotic fluids were sampled before arteficial rupture of membranes using closed vacutainer system. Blood samples were also taken from the pregnants simultaneously. Endotoxin concentrations of amniotic fluids were tested by the semiquantitative Limulus amebocyte lysate. Both amniotic fluids and blood samples were tested for the presence of DNA of lymphotropic human herpesviruses. The DNA of human papillomaviruses were tested only in the amniotic fluid samples. One-third of the amniotic fluids tested were found to contain measurable amounts of endotoxin. Lymphotropic herpesvirus DNA was deteced in every fourth amniotic fluid sample and in every 8th blood sample. The prevalence of papillomaviruses was 7 of 96 samples. No significant correlation was found between the presence of endotoxin and viruses in the amniotic fluids. Epstein-Barr virus, human cytomegalovirus and human herpesvirus type 7 were found more frequently in the amniotic fluids than in blood samples (7 to 1). The prevalence of human herpesvirus 6 and 8 was higher in the blood samples than that in the amniotic fluids. The mean weight of the neonates were not impaired significantly by the presence of either viruses or endotoxin. Possible post partum consequences, i.e. partial immunotolerance to viruses is discussed.

Published
2007
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