72 results on '"Palero F"'
Search Results
2. Chelarctusand Crenarctus(Crustacea: Scyllaridae) from Coral Sea waters, with molecular identification of their larvae
- Author
-
Genis-Armero, R., Błażewicz, M., Clark, P. F., and Palero, F.
- Abstract
AbstractChelarctusHolthuis, 2002 is widely distributed throughout the Indo-West Pacific, but its biogeographic patterns are unknown because Southern Hemisphere areas, such as the Coral Sea, remained poorly explored. Recent cruises organized by the Muséum national d'Histoire naturelle of Paris and the Australian Institute of Marine Science allowed the molecular identification of Crenarctus crenatus(Whitelegge, 1900), Chelarctus aureus(Holthuis, 1963) and Chelarctus crosnieriHolthuis, 2002 phyllosomae. The Coral Sea C. crenatuslarvae are identical to stages IX and X of Scyllarussp. Z, described in detail by Webber and Booth (2001). Descriptions of phyllosoma stages VI, IX and X of Ch. aureusand stages IX and X of Ch. crosnieriare also presented here. Morphological differences between Crenarctusand Chelarctuslarvae are established for the first time and previous misidentifications in the literature are re-assessed.
- Published
- 2022
- Full Text
- View/download PDF
3. Introduction - Crustacean Genomics Preface: Recent advances in Crustacean Genomics
- Author
-
Rotllant, G. (Guiomar), Palero, F. (Ferrán), Mather, P.B., Bracken-Grissom, H., and Santos, M.B. (María Begoña)
- Subjects
animal structures ,Next generation sequencing ,Reproduction ,Crustacea ,fungi ,Growth ,Genomics ,Molecular systematics - Abstract
This Special Issue on Crustacean Genomics arises from the TCS 2017 conference held in Barcelona, Spain, between 19 and 22 June, 2017. Applications of next generation sequencing have expanded rapidly over recent years, unveiling many new and exciting areas of genomic research. This includes novel insights into physiology, reproductive biology, response to environmental challenges, and their evolutionary history. Despite their importance, crustaceans still lack genomic resources compared with other widely-studied groups such as insects and vertebrates. The present volume integrates a collection of contributions from the speakers, and compiles the main results presented during the symposium. Following the structure of the Crustacean Genomics workshop, contributed papers have been arranged in two main blocks, a first set of studies focused on the use of transcriptomics to investigate crustacean physiology and reproduction while the second set focused on molecular systematics and evolutionary studies.
- Published
- 2018
4. The origin of large gypsum crystals in the Geode of Pulpí (Almería, Spain)
- Author
-
Canals, A., primary, Van Driessche, A.E.S., additional, Palero, F., additional, and García-Ruiz, J.M., additional
- Published
- 2019
- Full Text
- View/download PDF
5. Annotated checklist of brachyuran crabs (Crustacea, Decapoda) of the Iberian Peninsula (SW Europe)
- Author
-
Biología, Marco-Herrero, E., Abelló, P., Drake, P., García-Raso, J.E., González-Gordillo, J.I., Guerao, G., Palero, F., Cuesta, J.A., Biología, Marco-Herrero, E., Abelló, P., Drake, P., García-Raso, J.E., González-Gordillo, J.I., Guerao, G., Palero, F., and Cuesta, J.A.
- Abstract
Almost 50 years have passed since a group of reputed carcinologists (viz. Lipke B. Holthuis, Isabella Gordon and Jacques Forest) finished the posthumous work of Ricardo Zariquiey Álvarez (1968) on decapod crustaceans of the Iberian Peninsula. No lists of decapod fauna specifically covering this area have been published since then, and an update is needed. The current list of brachyuran crabs of the Iberian Peninsula comprises 140 species, which is 35 species more than the 105 valid species listed in Zariquiey Álvarez (1968). Systematic changes have affected the original classification, so now there are 20 superfamilies, 36 families and 77 genera. Additional species have been recorded in Iberian waters due to natural range expansions from nearby areas (Mediterranean and Atlantic), introductions by anthropogenic activities, and description of new taxa. Also, two species were synonymized. Several of these changes, based on evidence from larval morphology and/or molecular data, are detailed in this review. Although descriptions of crab species new to science are not expected to occur at a significant rate, an increase in the number of species in the Iberian Peninsula is expected to result from the introduction of alien species.
- Published
- 2017
6. An empirical study on collective intelligence algorithms for video games problem-solving
- Author
-
Gonzalez-Pardo, A., Palero, F., David Camacho, UAM. Departamento de Ingeniería Informática, Análisis de Datos e Inteligencia Aplicada (ING EPS-012), and Spanish Ministry of Science and Education under Project Code TIN2014-56494-C4-4-P, Comunidad Autonoma de Madrid under project CIBERDINE S2013/ICE-3095, and Savier an Airbus Defense&Space project (FUAM-076914 and FUAM-076915).
- Subjects
Informática ,Ant colony optimization ,Collective intelligence, ant colony optimization, genetic algorithms, video games solving algorithms, Lemmings video game ,68T20 ,Collective intelligence ,Lemmings video game ,Genetic algorithms ,Video games solving algorithms - Abstract
Computational intelligence (CI), such as evolutionary computation or swarm intelligence methods, is a set of bio-inspired algorithms that have been widely used to solve problems in areas like planning, scheduling or constraint satisfaction problems. Constrained satisfaction problems (CSP) have taken an important attention from the research community due to their applicability to real problems. Any CSP problem is usually modelled as a constrained graph where the edges represent a set of restrictions that must be verified by the variables (represented as nodes in the graph) which will define the solution of the problem. This paper studies the performance of two particular CI algorithms, ant colony optimization (ACO) and genetic algorithms (GA), when dealing with graph-constrained models in video games problems. As an application domain, the "Lemmings" video game has been selected, where a set of lemmings must reach the exit point of each level. In order to do that, each level is represented as a graph where the edges store the allowed movements inside the world. The goal of the algorithms is to assign the best skills in each position on a particular level, to guide the lemmings to reach the exit. The paper describes how the ACO and GA algorithms have been modelled and applied to the selected video game. Finally, a complete experimental comparison between both algorithms, based on the number of solutions found and the levels solved, is analysed to study the behaviour of those algorithms in the proposed domain., This work is supported by the Spanish Ministry of Science and Education under Project Code TIN2014-56494-C4-4-P, Comunidad Autonoma de Madrid under project CIBERDINE S2013/ICE-3095, and Savier an Airbus Defense & Space project (FUAM-076914 and FUAM-076915).
- Published
- 2015
7. Recombination in viruses: Mechanisms, methods of study, and evolutionary consequences
- Author
-
Pérez-Losada M, Arenas M, Galán JC, Palero F, and González-Candelas F
- Subjects
Reassortment ,viruses ,Mutation rate ,Linkage disequilibrium ,Population structure ,Recombination rate ,Recombination - Abstract
Recombination is a pervasive process generating diversity in most viruses. It joins variants that arise independently within the same molecule, creating new opportunities for viruses to overcome selective pressures and to adapt to new environments and hosts. Consequently, the analysis of viral recombination attracts the interest of clinicians, epidemiologists, molecular biologists and evolutionary biologists. In this review we present an overview of three major areas related to viral recombination: (i) the molecular mechanisms that underlie recombination in model viruses, including DNA-viruses (Herpesvirus) and RNA-viruses (Human Influenza Virus and Human Immunodeficiency Virus), (ii) the analytical procedures to detect recombination in viral sequences and to determine the recombination breakpoints, along with the conceptual and methodological tools currently used and a brief overview of the impact of new sequencing technologies on the detection of recombination, and (iii) the major areas in the evolutionary analysis of viral populations on which recombination has an impact. These include the evaluation of selective pressures acting on viral populations, the application of evolutionary reconstructions in the characterization of centralized genes for vaccine design, and the evaluation of linkage disequilibrium and population structure. (C) 2014 Elsevier B.V. All rights reserved.
- Published
- 2015
8. Geographical and Temporal Structures of Legionella pneumophila Sequence Types in Comunitat Valenciana (Spain), 1998 to 2013
- Author
-
Sánchez-Busó L, Coscollà M, Palero F, Camaró ML, Gimeno M, Moreno P, Escribano I, López Perezagua MM, Colomina J, Vanaclocha H, and González-Candelas F
- Abstract
Legionella pneumophila is an accidental human pathogen associated with aerosol formation in water-related sources. High recombination rates make Legionella populations genetically diverse, and nearly 2,000 different sequence types (STs) have been described to date for this environmental pathogen. The spatial distribution of STs is extremely heterogeneous, with some variants being present worldwide and others being detected at only a local scale. Similarly, some STs have been associated with disease outbreaks, such as ST578 or ST23. Spain is among the European countries with the highest incidences of reported legionellosis cases, and specifically, Comunitat Valenciana (CV) is the second most affected area in the country. In this work, we aimed at studying the overall diversity of Legionella pneumophila populations found in the period from 1998 to 2013 in 79 localities encompassing 23 regions within CV. To do so, we performed sequence-based typing (SBT) on 1,088 L. pneumophila strains detected in the area from both environmental and clinical sources. A comparison with the genetic structuring detected in a global data set that included 20 European and 7 non-European countries was performed. Our results reveal a level of diversity in CV that can be considered representative of the diversity found in other countries worldwide.
- Published
- 2015
9. Estudios de epidemiología molecular en población inmigrante en España
- Author
-
González-Candelas F, Alma Bracho M, Comas I, d'Auria G, D Unková M, García R, Gosalbes MJ, Isaac S, Latorre A, López-Labrador FX, Patiño Galindo JÁ, Palero F, Pérez-Brocal V, Pérez-Cobas AE, Sánchez-Busó L, Silva FJ, Vázquez-Castellanos JF, and Moya A
- Abstract
Molecular epidemiology is a new scientific discipline which allows to integrate information on the genetic variation of infectious pathogens with their diffusion in a population and its subgroups including, for instance, resistance mutations to antibiotics and antiretrovirals. We present the results of an analysis of scientific publications that analyze the health status of the immigrant population in Spain from a molecular epidemiology perspective.
- Published
- 2014
10. Annotated checklist of brachyuran crabs (Crustacea, Decapoda) of the Iberian Peninsula (SW Europe)
- Author
-
Biología, Marco-Herrero, E., Abelló, P., Drake, P., García-Raso, J.E., González-Gordillo, J.I., Guerao, G., Palero, F., Cuesta, J.A., Biología, Marco-Herrero, E., Abelló, P., Drake, P., García-Raso, J.E., González-Gordillo, J.I., Guerao, G., Palero, F., and Cuesta, J.A.
- Abstract
Almost 50 years have passed since a group of reputed carcinologists (viz. Lipke B. Holthuis, Isabella Gordon and Jacques Forest) finished the posthumous work of Ricardo Zariquiey Álvarez (1968) on decapod crustaceans of the Iberian Peninsula. No lists of decapod fauna specifically covering this area have been published since then, and an update is needed. The current list of brachyuran crabs of the Iberian Peninsula comprises 140 species, which is 35 species more than the 105 valid species listed in Zariquiey Álvarez (1968). Systematic changes have affected the original classification, so now there are 20 superfamilies, 36 families and 77 genera. Additional species have been recorded in Iberian waters due to natural range expansions from nearby areas (Mediterranean and Atlantic), introductions by anthropogenic activities, and description of new taxa. Also, two species were synonymized. Several of these changes, based on evidence from larval morphology and/or molecular data, are detailed in this review. Although descriptions of crab species new to science are not expected to occur at a significant rate, an increase in the number of species in the Iberian Peninsula is expected to result from the introduction of alien species.
- Published
- 2015
11. Phylogeographic patterns of decapod crustaceans at the Atlantic-Mediterranean transition
- Author
-
García-Merchán, V.H., Robainas-Barcia, A., Abelló, P. (Pere), Macpherson, E. (Enrique), Palero, F. (Ferrán), García-Rodríguez, M. (Mariano), Gil-de-Sola-Simarro, L. (Luis), and Pascual, M.
- Subjects
Sede Central IEO ,Pesquerías - Abstract
Sí
- Published
- 2012
12. MICROSATELIGHT-Pipeline to Expedite Microsatellite Analysis
- Author
-
Palero F, Gonzalez-Candelas F, and Pascual M
- Subjects
software ,population genetics ,bioinformatics ,SSR - Abstract
MICROSATELIGHT is a Perl/Tk pipeline with a graphical user interface that facilitates several tasks when scoring microsatellites. It implements new subroutines in R and PERL and takes advantage of features provided by previously developed freeware. MICROSATELIGHT takes raw genotype data and automates the peak identification through PeakScanner. The PeakSelect subroutine assigns peaks to different microsatellite markers according to their multiplex group, fluorochrome type, and size range. After peak selection, binning of alleles can be carried out 1) automatically through AlleloBin or 2) by manual bin definition through Binator. In both cases, several features for quality checking and further binning improvement are provided. The genotype table can then be converted into input files for several population genetics programs through CREATE. Finally, Hardy-Weinberg equilibrium tests and confidence intervals for null allele frequency can be obtained through GENEPOP. MICROSATELIGHT is the only freely available public-domain software that facilitates full multiplex microsatellite scoring, from electropherogram files to user-defined text files to be used with population genetics software. MICROSATELIGHT has been created for the Windows XP operating system and has been successfully tested under Windows 7. It is available at http://sourceforge.net/projects/microsatelight/.
- Published
- 2011
13. Las mineralizaciones litiniferas del oeste de Salamanca y Zamora
- Author
-
Palero, F., Reguilón, R., and Martín-Izard, A.
- Subjects
QE1-996.5 ,mineralización ,Hercínico ,pegmatitas ,litio ,lcsh:QE1-996.5 ,pegmatites ,ore deposits ,Geology ,veins ,Lithium ,filones ,lcsh:Geology ,hercínico ,Hercynian ,Litio - Abstract
The aim of this paper is to describe the most important geological, mineralogical and geochemical features of the Li ores (bouth pegmatites and quartz veins) located in the west part of the Salamanca and Zamora provinces. The pegmatites mostly belong to the lepidolite type and they are complex and zoned. In one case, the ore in the pegmatite is litiophilite, and the pegmatite is simple. The veins are quartz rich with ambligonite and sorne feldspar and sulphides. They appear always related to granitic rocks. All these bodies are also mineralized with cassiterite, and sorne of them contain columbite tantalite too.El objeto de este trabajo es el describir las características geológicas, mineralógicas y geoquímicas más importantes de las mineralizaciones de Li (pegmatitas y filones) localizadas en el oeste de las provincias de Salamanca y Zamora. La mayor parte de las pegmatitas son de lepidolita como mena de Li, resultando todas éstas ser complejas y zonadas. En un caso, la mineralización es de litiofilita y la pegmatita que la alberga es simple. Los filones son de cuarzo con ambligonita y algo de feldespato y sulfuros. Todos los yacimientos aparecen siempre en relación con rocas graníticas. A su vez, todos los cuerpos estudiados están mineralizados en casiterita, y algunos de ellos en columbo-tantalita también.
- Published
- 1992
- Full Text
- View/download PDF
14. The Decapod Tree of Life: Compiling the Data and Moving toward a Consensus of Decapod Evolution
- Author
-
Bracken, H. D., Toon, A., Felder, D. L., Martin, J. W., Finley, M., Rasmussen, J., Palero, F., and Keith Crandall
- Subjects
ribosomal ,tree of life ,crustaceans ,Decapoda ,protein-coding ,mitochondrial gene ,nuclear gene ,molecular phylogeny - Abstract
The order Decapoda represents a species-rich group of crustaceans. Numerous economically important and morphologically diverse members of this group have been studied extensively for many decades, in part to understand their phylogeny. There are several competing hypotheses concerning relationships among the major lineages of Decapoda. Our laboratories are estimating a robust decapod phylogeny based on molecular and morphological data in an attempt to resolve relationships among major lineages. The order includes roughly 175 families and more than 15,000 described species (extant and extinct). Interpretations are complicated by the estimated 437 million years since origin of the Decapoda, with all the major lineages likely established by 325 million years ago. Constructing a molecular phylogeny across such a timescale requires markers with enough variation to infer relationships at the fine scale (at and within the family level) but which are conservative enough to refl ect deeper divergences across infraorders. Here we present a molecular phylogeny for the order Decapoda, combining nuclear and mitochondrial sequences, to investigate relationships among nine pleocyemate infraorders, one dendrobranchiate superfamily, 56 families, 113 genera, and 128 species. New and available sequence data are assembled to build the most extensive decapod phylogeny to date both in terms of taxon representation and genetic coverage. We discuss current and new hypotheses of decapod relationships and suggest a plan for the movement towards a consensus of decapod evolution.
- Published
- 2009
15. Phylogeography of the European spiny lobster (Palinurus elephas): Influence of current oceanographical features and historical processes
- Author
-
PALERO F., ABELLÓ P., MACPHERSON E., and GRISTINA M. PASCUAL M.
- Published
- 2008
16. Teschoviruses and sapeloviruses in faecal samples from wild boar in Spain
- Author
-
Cano-Gómez, C., García-Casado, M. A., Soriguer, R., Palero, F., Jiménez-Clavero, M. A., Cano-Gómez, C., García-Casado, M. A., Soriguer, R., Palero, F., and Jiménez-Clavero, M. A.
- Abstract
Teschovirus and Sapelovirus are two genera of the Picornaviridae family, comprising highly variable and heterogeneous enteric viruses, commonly found in faecal samples from domestic pigs. Although both of them are also known to infect wild boar, studies on their presence in these wild suids are scarce. The present study aimed at determining the presence of porcine teschovirus (PTV) and sapelovirus (PSV) in free-living wild boar populations, as well as to study their relationships with similar viruses present in pigs. Fresh faecal samples (n = 63) from wild boar were collected in Doñana Biological Reserve (SW Spain) during 2007 and 2011, and analysed using multiplex RT-PCR for the simultaneous detection and differentiation of PTV and PSV. A total of 32 samples (50.8%) presented positive PTV bands, while PSV amplicons were detected in 4 samples (6.4%). All PSV-positive samples were also positive for PTV, which indicated co-infection with both viruses. Virus isolation was successful from 6 samples, 4 of which were identified as PTV by RT-PCR, and three of these were further characterized by sequencing of the VP1 capsid protein. The remaining two isolates were negative for PTV or PSV. Genetic characterization of PSV-positive faecal samples, using the VP4 protein coding gene, was successful in 4 stool samples. Close phylogenetic relationship was found among wild boar and domestic pig strains in both PTV and PSV. More studies are needed to ascertain the epizootiological significance of these findings. © 2012 Elsevier B.V.
- Published
- 2013
17. Isolation and characterization of microsatellite loci inPalinurus elephas
- Author
-
PALERO, F., primary and PASCUAL, M., additional
- Published
- 2008
- Full Text
- View/download PDF
18. Phylogeography of the European spiny lobster (Palinurus elephas): Influence of current oceanographical features and historical processes
- Author
-
Palero, F., primary, Abelló, P., additional, Macpherson, E., additional, Gristina, M., additional, and Pascual, M., additional
- Published
- 2008
- Full Text
- View/download PDF
19. Morphology of the final stage phyllosoma larva of Scyllarus pygmaeus (Crustacea: Decapoda: Scyllaridae), identified by DNA analysis
- Author
-
Palero, F., primary, Guerao, G., additional, and Abello, P., additional
- Published
- 2008
- Full Text
- View/download PDF
20. A LEAD ISOTOPE DATABASE: THE LOS PEDROCHES – ALCUDIA AREA (SPAIN); IMPLICATIONS FOR ARCHAEOMETALLURGICAL CONNECTIONS ACROSS SOUTHWESTERN AND SOUTHEASTERN IBERIA*
- Author
-
SANTOS ZALDUEGUI, J. F., primary, GARCÍA DE MADINABEITIA, S., additional, GIL IBARGUCHI, J. I., additional, and PALERO, F., additional
- Published
- 2004
- Full Text
- View/download PDF
21. Geology and Metallogenic Evolution of the Polymetallic Deposits of the Alcudia Valley Mineral Field, Eastern Sierra Morena, Spain
- Author
-
Palero, F. J., primary
- Published
- 2003
- Full Text
- View/download PDF
22. Geology and Metallogenic Evolution of the PolymetallicDeposits of the Alcudia Valley Mineral Field, Eastern Sierra Morena, Spain
- Author
-
Palero, F. J., primary, Both, R. A., additional, Arribas, A., additional, Boyce, A. J., additional, Mangas, J., additional, and Martin-Izard, A., additional
- Published
- 2003
- Full Text
- View/download PDF
23. Estudios Geológicos
- Author
-
Martín-Izard, A., primary, Reguilón, R., additional, and Palero, F., additional
- Published
- 1992
- Full Text
- View/download PDF
24. A LEAD ISOTOPE DATABASE: THE LOS PEDROCHES– ALCUDIA AREA (SPAIN); IMPLICATIONS FOR ARCHAEOMETALLURGICAL CONNECTIONS ACROSS SOUTHWESTERN AND SOUTHEASTERN IBERIA.
- Author
-
Zalduegui, J. F. Santos, de Madinabeitia, S. García, Ibarguchi, J. I. Gil, and Palero, F.
- Subjects
GALENA ,SULFIDE minerals ,LEAD ores ,BRONZE Age ,CIVILIZATION ,CERUSSITE - Abstract
One hundred and twenty-five new lead isotopic analyses on galena, mainly from the Los Pedroches– Alcudia Valley area of southern Iberia, are presented. These data allow us to define four compositional groups in the
207 Pb/206 Pb versus208 Pb/206 Pb and207 Pb/206 Pb versus206 Pb/204 Pb diagrams. Group I compositions are intermediate between those previously reported for southeastern and southwestern Iberian ore mineral locations. The compositions of Group II, the largest group, overlap with ore data from southwestern Spain. Groups III and IV have compositions that have never before been identified in this region and are comparable to those from the Sardinian Cu ores, which might explain the previously assumed exotic origin for local Bronze Age artefacts. [ABSTRACT FROM AUTHOR]- Published
- 2004
- Full Text
- View/download PDF
25. Isolation and characterization of microsatellite loci in Palinurus elephas.
- Author
-
PALERO, F. and PASCUAL, M.
- Subjects
- *
SPINY lobsters , *AQUATIC resources conservation , *MICROSATELLITE repeats , *GENE libraries , *GENETIC polymorphisms , *HARDY-Weinberg formula - Abstract
The European spiny lobster ( Palinurus elephas) mean annual catches have decreased alarmingly during recent decades along its entire distribution area due to stock over-exploitation, which makes it a primary target for conservation plans. A total of 164 microsatellite loci were isolated from a genomic library of P. elephas enriched for CA, GA, CAA and GATA repeats. A total of 15 polymorphic loci have been screened in 48 individuals. High numbers of alleles per locus (averaging 20 ± 10.5) and observed heterozygosity (averaging 0.789 ± 0.197) have been detected. None of the pairs of loci showed significant linkage disequilibrium. Two of the loci (Pael1 and Pael2) showed significant departure from Hardy–Weinberg equilibrium in Sagres, while Pael38 showed significant departure in Tunis. These highly polymorphic markers will be useful in determining the spatial patterns of genetic diversity between and within populations of Palinurus elephas. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
- View/download PDF
26. Molecular epidemiology studies on the immigrant population in Spain | Estudios de epidemiologíamolecular en población inmigrante en España
- Author
-
González-Candelas, F., Bracho, M. A., Comas, I., D Auria, G., Džunková, M., García, R., Gosalbes, M. J., Isaac, S., Amparo Latorre, López-Labrador, F. X., Galindo, J. A. P., Palero, F., Pérez-Brocal, V., Pérez-Cobas, A. E., Sánchez-Busó, L., Silva, F. J., Vázquez-Castellanos, J. F., and Moya, A.
27. The first phyllosoma stage of Palinurus mauritaniens (crustacea: Decapoda: Palinuridae)
- Author
-
Palero, F. and Pere Abello
28. Player models assessment by clustering techniques,Evaluación de Modelos de Jugadores mediante Técnicas de Clustering
- Author
-
Palero, F., Gonzalez-Pardo, A., and David Camacho
29. Interpretando la Mina Rica (Pulpi, Almería): estructura, mineralogía y geoquímica
- Author
-
Palero, F., Canals, A., Driessche, A. E. S., Juan Manuel García-Ruiz, and Universitat de Barcelona
- Subjects
Mineralogia ,Geochemistry ,Província) [Almeria (Andalusia] ,Geoquímica ,Mineralogy ,Province) [Almería (Andalusia] - Abstract
En este trabajo se presenta la estructura, mineralogía y geoquímica de la Mina Rica, un excelente ejemplo de la metalogenia del SE peninsular. Para ello se ha realizado la cartografía geológica detallada de las galerías, el estudio etrográfico de las zonas mineralizadas y no mineralizadas y el análisis isotópico de los sulfatos y sufuros.
30. Rapid radiation in spiny lobsters (Palinurus spp) as revealed by classic and ABC methods using mtDNA and microsatellite data
- Author
-
Macpherson Enrique, Abelló Pere, Lopes Joao, Palero Ferran, Pascual Marta, and Beaumont Mark A
- Subjects
Evolution ,QH359-425 - Abstract
Abstract Background Molecular tools may help to uncover closely related and still diverging species from a wide variety of taxa and provide insight into the mechanisms, pace and geography of marine speciation. There is a certain controversy on the phylogeography and speciation modes of species-groups with an Eastern Atlantic-Western Indian Ocean distribution, with previous studies suggesting that older events (Miocene) and/or more recent (Pleistocene) oceanographic processes could have influenced the phylogeny of marine taxa. The spiny lobster genus Palinurus allows for testing among speciation hypotheses, since it has a particular distribution with two groups of three species each in the Northeastern Atlantic (P. elephas, P. mauritanicus and P. charlestoni) and Southeastern Atlantic and Southwestern Indian Oceans (P. gilchristi, P. delagoae and P. barbarae). In the present study, we obtain a more complete understanding of the phylogenetic relationships among these species through a combined dataset with both nuclear and mitochondrial markers, by testing alternative hypotheses on both the mutation rate and tree topology under the recently developed approximate Bayesian computation (ABC) methods. Results Our analyses support a North-to-South speciation pattern in Palinurus with all the South-African species forming a monophyletic clade nested within the Northern Hemisphere species. Coalescent-based ABC methods allowed us to reject the previously proposed hypothesis of a Middle Miocene speciation event related with the closure of the Tethyan Seaway. Instead, divergence times obtained for Palinurus species using the combined mtDNA-microsatellite dataset and standard mutation rates for mtDNA agree with known glaciation-related processes occurring during the last 2 my. Conclusion The Palinurus speciation pattern is a typical example of a series of rapid speciation events occurring within a group, with very short branches separating different species. Our results support the hypothesis that recent climate change-related oceanographic processes have influenced the phylogeny of marine taxa, with most Palinurus species originating during the last two million years. The present study highlights the value of new coalescent-based statistical methods such as ABC for testing different speciation hypotheses using molecular data.
- Published
- 2009
- Full Text
- View/download PDF
31. Mitochondrial, nuclear and morphological differentiation in the swimming crab Liocarcinus depurator along the Atlantic-Mediterranean transition.
- Author
-
García-Merchán VH, Palero F, Rufino M, Macpherson E, Abelló P, and Pascual M
- Subjects
- Animals, Mediterranean Sea, Atlantic Ocean, Mitochondria genetics, Genetic Variation, Genetics, Population, Cell Nucleus genetics, Selection, Genetic, Brachyura genetics, Microsatellite Repeats genetics, DNA, Mitochondrial genetics
- Abstract
Environmental gradients in the sea may coincide with phenotypic or genetic gradients resulting from an evolutionary balance between selection and dispersal. The population differentiation of the swimming crab, Liocarcinus depurator, an important by-catch species in the Mediterranean Sea and North-East Atlantic, was assessed using both genetic and morphometric approaches. A total of 472 specimens were collected along its distribution area, and 17 morphometric landmarks, one mitochondrial gene (COI) and 11 polymorphic microsatellite markers were scored in 350, 287 and 280 individuals, respectively. Morphometric data lacked significant differences, but genetic analyses showed significant genetic differentiation between Atlantic and Mediterranean populations, with a steeper gradient in COI compared to microsatellite markers. Interestingly, nuclear differentiation was due to an outlier locus with a gradient in the Atlantic-Mediterranean transition area overlapping with the mtDNA gradient. Such overlapping clines are likely to be maintained by natural selection. Our results suggest a scenario of past isolation with local adaptation and secondary contact between the two basins. Local adaptation during the process of vicariance may reinforce genetic differentiation at loci maintained by environmental selection even after secondary contact., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
32. The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics.
- Author
-
Corominas M, Marquès-Bonet T, Arnedo MA, Bayés M, Belmonte J, Escrivà H, Fernández R, Gabaldón T, Garnatje T, Germain J, Niell M, Palero F, Pons J, Puigdomènech P, Initiative For The Earth BioGenome Project TC, Arroyo V, Cuevas-Caballé C, Obiol JF, Gut I, Gut M, Hidalgo O, Izquierdo-Arànega G, Pérez-Sorribes L, Righi E, Riutort M, Vallès J, Rozas J, Alioto T, and Guigó R
- Abstract
The Catalan Initiative for the Earth BioGenome Project (CBP) is an EBP-affiliated project network aimed at sequencing the genome of the >40 000 eukaryotic species estimated to live in the Catalan-speaking territories (Catalan Linguistic Area, CLA). These territories represent a biodiversity hotspot. While covering less than 1% of Europe, they are home to about one fourth of all known European eukaryotic species. These include a high proportion of endemisms, many of which are threatened. This trend is likely to get worse as the effects of global change are expected to be particularly severe across the Mediterranean Basin, particularly in freshwater ecosystems and mountain areas. Following the EBP model, the CBP is a networked organization that has been able to engage many scientific and non-scientific partners. In the pilot phase, the genomes of 52 species are being sequenced. As a case study in biodiversity conservation, we highlight the genome of the Balearic shearwater Puffinus mauretanicus , sequenced under the CBP umbrella., (© The Author(s) 2024. Published by Oxford University Press on behalf of NAR Genomics and Bioinformatics.)
- Published
- 2024
- Full Text
- View/download PDF
33. New mitogenomes of Runcinidae and Facelinidae: two understudied heterobranch families (Mollusca: Gastropoda).
- Author
-
Galià-Camps C, Araujo AK, Carmona L, Martín-Hervás MDR, Pola M, Palero F, and Cervera JL
- Abstract
Here, we present the mitochondrial sequences of two sea slugs (Heterobranchia): Runcina aurata and Facelina auriculata , the latter being the type species of the family. The mitochondrial genomes are 14,282 and 14,171bp in length, respectively, with a complete set of 13 PCGs, 2 rRNAs, and 22 tRNAs. None of the mitogenomes show gene reorganization, keeping the standard mitogenomic structure of Heterobranchia. Nucleotide composition differs significantly between them, with R. aurata showing the most AT-rich mitogenome (25.7% GC content) reported to date in Heterobranchia, and F. auriculata showing a rich GC content (35%) compared with other heterobranch mitochondrial genomes., Competing Interests: No potential conflict of interest was reported by the authors., (© 2024 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.)
- Published
- 2024
- Full Text
- View/download PDF
34. Novel molecular resources for single-specimen barcoding of enigmatic crustacean y-larvae.
- Author
-
Dreyer N, Olesen J, Grygier MJ, Eibye-Jacobsen D, Savchenko AS, Fujita Y, Kolbasov GA, Machida RJ, Chan BKK, and Palero F
- Subjects
- Animals, Larva genetics, Phylogeny, Crustacea classification, Crustacea genetics, DNA Barcoding, Taxonomic methods
- Abstract
Despite discovery more than 100years ago and documented global occurrence from shallow waters to the deep sea, the life cycle of the enigmatic crustacean y-larvae isincompletely understood and adult forms remain unknown. To date, only 2 of the 17 formally described species, all based on larval stages, have been investigated using an integrative taxonomic approach. This approach provided descriptions of the morphology of the naupliar and cyprid stages, and made use of exuvial voucher material and DNA barcodes. To improve our knowledge about the evolutionary history and ecological importance of y-larvae, we developed a novel protocol that maximises the amount of morpho-ecological and molecular data that can be harvested from single larval specimens. This includes single-specimen DNA barcoding and daily imaging of y-nauplii reared in culture dishes, mounting of the last naupliar exuviae on a slide as a reference voucher, live imaging of the y-cyprid instar that follows, and fixation, DNA extraction, amplification and sequencing of the y-cyprid specimen. Through development and testing of a suite of new primers for both nuclear and mitochondrial protein-coding and ribosomal genes, we showcase how new sequence data can be used to estimate the phylogeny of Facetotecta. We expect that our novel procedure will help to unravel the complex systematics of y-larvae and show how these fascinating larval forms have evolved. Moreover, we posit that our protocols should work on larval specimens from a diverse array of moulting marine invertebrate taxa.
- Published
- 2024
- Full Text
- View/download PDF
35. Integrative Taxonomy of Cyclocyprididae Kaufmann, 1900 (Ostracoda: Podocopa) with Description of a New Genus and Species.
- Author
-
Bisquert-Ribes M, Rueda J, Palero F, Savatenalinton S, and Mesquita-Joanes F
- Abstract
The two widespread ostracod genera Cypria Zenker, 1854 and Physocypria Vávra, 1897 are traditionally distinguished based on the presence or absence of tubercles on the right valve margin. However, recent research based on soft body parts has uncovered new cryptic genera within Cypria and Physocypria . Following this line of research, a new Cyclocyprididae genus and species, Vizcainocypria viator gen. nov. sp. nov., is here described from individuals collected in rice fields and wetlands of the Iberian Peninsula. Vizcainocypria is compared with Cypria , Physocypria , Dentocypria Savatenalinton, 2017, Keysercypria Karanovic, 2011, Brasilocypria Almeida et al., 2023, and Claudecypria Almeida et al., 2023 based on morphological evidence. Besides the presence or absence of tubercles on the right valve, these genera can be distinguished according to their mandibular palp, second thoracopod, caudal ramus, and male hemipenis. Molecular analyses using mitochondrial (COX1), and nuclear (28S rDNA) genes provide further support for the differentiation of Cypria , Dentocypria , Physocypria and Vizcainocypria gen. nov. The present study highlights the importance of using an integrative taxonomy approach, combining shell and soft-body parts morphology and molecular data, to characterize the rich diversity of freshwater ostracods.
- Published
- 2023
- Full Text
- View/download PDF
36. Identification of Phyllosoma Larvae of the Lobsters Acantharctus and Biarctus (Crustacea: Scyllaridae) from the SW Indian Ocean.
- Author
-
Genis-Armero R, Groeneveld J, Singh S, Clark PF, Corbari L, and Palero F
- Abstract
The accurate assignment of cryptic larvae to species-level is a key aspect of marine ecological research and can be achieved through integrated molecular and morphological studies. A combination of two mitochondrial markers (COI and 16S) and a detailed morphological analysis was used to identify phyllosoma larvae of slipper lobster (Scyllaridae) species collected during a survey in the SW Indian Ocean. Two morphotypes were tentatively assigned to Acantharctus ornatus and Biarctus pumilus , both genera for which the larval morphology was unknown. Morphological revision of an adult specimen used to generate the putative A. ornatus sequences in GenBank revealed that it was misidentified and corresponds to B. dubius . The final phyllosoma stage of B. pumilus and subfinal and final stages of A. ornatus were described, clarifying prior misidentifications in the literature. Scyllarid biodiversity in the SW Indian Ocean is underestimated and sampling of deeper water layers is recommended to complete current knowledge of species and larval stages present in the region.
- Published
- 2023
- Full Text
- View/download PDF
37. Single-specimen systematics resolves the phylogeny and diversity conundrum of enigmatic crustacean y-larvae.
- Author
-
Dreyer N, Palero F, Grygier MJ, Chan BKK, and Olesen J
- Subjects
- Animals, Phylogeny, Larva anatomy & histology, Life Cycle Stages, Crustacea, Biological Evolution
- Abstract
Resolving the evolutionary history of organisms is a major goal in biology. Yet for some taxa the diversity, phylogeny, and even adult stages remain unknown. The enigmatic crustacean "y-larvae" (Facetotecta) are one particularly striking example. Here, we use extensive video-imaging and single-specimen molecular sequencing of >200 y-larval specimens to comprehensively explore for the first time their evolutionary history and diversity. This integrative approach revealed five major clades of Facetotecta, four of which encompass a considerable larval diversity. Whereas morphological analyses recognized 35 y-naupliar "morphospecies", molecular species-delimitation analyses suggested the existence of between 88 and 127 species. The phenotypic and genetic diversity between the morphospecies suggests that a more elaborate classification than the current one-genus approach is needed. Morphology and molecular data were highly congruent at shallower phylogenetic levels, but no morphological synapomorphies could be unambiguously identified for major clades, which mostly comprise both planktotrophic and lecithotrophic y-nauplii. We argue that lecithotrophy arose several times independently whereas planktotrophic y-nauplii, which are structurally more similar across clades, most likely display the ancestral feeding mode of Facetotecta. We document a remarkably complex and highly diverse phylogenetic backbone for a taxon of larval marine crustaceans, the full life cycle of which remains a mystery., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2023. Published by Elsevier Inc.)
- Published
- 2023
- Full Text
- View/download PDF
38. Mineralochemical Mechanism for the Formation of Salt Volcanoes: The Case of Mount Dallol (Afar Triangle, Ethiopia).
- Author
-
Otálora F, Palero F, Papaslioti EM, and García-Ruiz JM
- Abstract
A genetic model is proposed for the formation and evolution of volcano-like structures from materials other than molten silicate rocks. The model is based on Mount Dallol (Afar Triangle, Ethiopia), currently hosting a conspicuous hydrothermal system with hot, hyper-acidic springs, forming a colorful landscape of unique mineral patterns. We reason that Mount Dallol is the last stage of the formation of a salt volcano driven by the destabilization of a thick sequence of hydrated minerals (the Houston Formation) after the emplacement of an igneous intrusion beneath the thick Danakil evaporitic sequence. Our claim is supported by field studies, calculations of the mineral/water volume balance upon mineral dehydration, and by a geothermal model of the Danakil basin predicting a temperature up to 220 °C at the Houston Formation after the intrusion of a basaltic magma without direct contact with the evaporitic sequence. Although insufficient for salt melting, this heating triggers mineral dehydration and hydrolysis, leading to a total volume increase of at least 25%. The released brine is segregated upward into a pressurized chamber, where the excess volume produced the doming of Mount Dallol. Later, the collapse of the dome formed a caldera and the emission of clastic flows. The resulting structures and materials resemble volcanic lava flows in distribution, structure, and texture but are entirely made of salty materials. This novel mechanism of the generation of pressurized brines and their later eruption extends the relevance of volcanologic studies to lower temperature ranges and unanticipated geologic contexts on Earth and possibly also on other planets., Competing Interests: The authors declare no competing financial interest., (© 2022 The Authors. Published by American Chemical Society.)
- Published
- 2022
- Full Text
- View/download PDF
39. Mislabeling and nomenclatorial confusion of Typhlotanais sandersi Kudinova-Pasternak, 1985 (Crustacea: Tanaidacea) and establishment of a new genus.
- Author
-
Gellert M, Palero F, and Błażewicz M
- Subjects
- Animals, Animal Distribution, Crustacea anatomy & histology, Knowledge
- Abstract
Re-examination of historical collections allowed us to resolve the taxonomic status of Typhlotanais sandersi Kudinova-Pasternak, 1985, originally described based on a single specimen from Great-Meteor Seamount. The holotype of this species was considered lost and the species redescribed based on a second specimen from the type locality by Błażewicz-Paszkowycz (2007a), who placed Ty. sandersi on a newly established genus Typhlamia . Thorough morphological analysis of Typhlamia and Typhlotanais species and recently obtained genetic data of typhlotanaids from N Atlantic and NW Pacific waters allow us to conclude that the redescription of Ty. sandersi by Błażewicz-Paszkowycz (2007a) was based on a wrongly labelled specimen that, rather than a type of Ty. sandersi , represents in fact a new species of Typhlamia . The morphological comparison of the type species of Typhlotanais ( Ty. aequiremis ) with all 'long-bodied' typhlotanaid taxa with rounded pereonites margins ( i.e ., Typhlamia, Pulcherella, Torquella ), and the use of genetic evidence, support the establishment of a new genus to accommodate: Ty. sandersi , Ty. angusticheles Kudinova-Pasternak, 1989, and a third species from N Atlantic waters, that is described here for the first time. Current knowledge on 'long-bodied' typhlotanaids with rounded pereonites is summarised and a taxonomical key for their identification provided., Competing Interests: The authors declare that they have no competing interests., (© 2022 Gellert et al.)
- Published
- 2022
- Full Text
- View/download PDF
40. Parasitoids (Hymenoptera) of Mealybug Pests (Hemiptera: Pseudococcidae) from Southern Brazil: Molecular and Morphological Characterization.
- Author
-
Pacheco da Silva VC, Aquino DA, Crochard D, Malausa T, Botton M, and Palero F
- Subjects
- Animals, Brazil, Fruit, Hemiptera parasitology, Hymenoptera anatomy & histology, Hymenoptera classification
- Abstract
Parasitoids of three mealybug pests (Hemiptera: Pseudococcidae), Planococcus ficus (Signoret), Pseudococcus sociabilis Hambleton, and Pseudococcus viburni (Signoret) have been identified for the first time in Brazil. Mealybugs were collected in fruit-growing areas along southern Brazil during 2013-2016. An integrative approach, combining morphological and molecular methods, was used to identify the Brazilian parasitoids to the species level. Fifteen species were recorded, including 14 primary parasitoids belonging to Encyrtidae and Platygastridae and a single secondary parasitoid species belonging to Signiphoridae. The encyrtid parasitoids Acerophagus flavidulus (Brèthes), Anagyrus calyxtoi Noyes and Zaplatycerus sp., and the signiphorid secondary parasitoid Chartocerus axillaris De Santis are reported for the first time in Brazil., (© 2021. Sociedade Entomológica do Brasil.)
- Published
- 2021
- Full Text
- View/download PDF
41. A new species of Cypris (Crustacea: Ostracoda) from the Iberian Peninsula and the Balearic Islands, with comments on the first ostracod named using the Linnean system.
- Author
-
Mesquita-Joanes F, Aguilar-Alberola JA, Palero F, and Rueda J
- Subjects
- Animals, Europe, Male, Spain, Crustacea
- Abstract
The genus Cypris, considered the oldest ostracod generic name erected using the Linnean system, comprises a reduced number of large-bodied species, mostly found in Africa and Asia. Only six of them are known to occur in Europe. Here we describe a new species, Cypris pretusi sp. nov., collected in small temporary streams and ponds along the Eastern Iberian Peninsula and Minorca (Balearic Islands). The new species is very close to the type species of the genus, Cypris pubera O.F. Müller, 1776, but differs from it in having a set of smaller subequal spines on the posterior edge of the valves, by the absence of conspicuous spines along the front edge, and by the beak-like frontal shape of its carapace in dorsal view, similar to Cypris decaryi Gauthier, 1933. Soft parts are very similar to the type species, but it differs in having shorter swimming setae on the second antennae. Molecular analyses of the COX1 region support its status as a species distinct from C. pubera and closer to Cypris bispinosa Lucas, 1849, also providing evidence for a separation of C. pubera s.l. in two clades, one of which is here considered to correspond to Cypris triaculeata Daday, 1892. We discuss the relationships of C. pretusi sp. nov. to other members of the genus and its possible origin from nearby biogeographic regions (probably Africa or Asia) and provide a key to species of Cypris found in Europe. We also discuss the relationship between Monoculus concha pedata (= M. conchaceus), the first ostracod named by Linnæus, and Cypris pubera, the type species of the genus, described by Müller in 1776 and considered by him the same species as the one first named by Linnæus.
- Published
- 2020
- Full Text
- View/download PDF
42. Deep ocean seascape and Pseudotanaidae (Crustacea: Tanaidacea) diversity at the Clarion-Clipperton Fracture Zone.
- Author
-
Jakiel A, Palero F, and Błażewicz M
- Subjects
- Animals, Arthropod Proteins genetics, Crustacea anatomy & histology, Crustacea classification, Electron Transport Complex IV genetics, Pacific Ocean, Phylogeny, Spatial Analysis, Animal Distribution, Biodiversity, Biological Evolution, Crustacea physiology, Mining
- Abstract
Understanding the diversity and spatial distribution of benthic species is fundamental to properly assess the impact of deep sea mining. Tanaidacea provide an exceptional opportunity for assessing spatial patterns in the deep-sea, given their low mobility and limited dispersal potential. The diversity and distribution of pseudotanaid species is characterized here for the Clarion and Clipperton Fractures Zone (CCZ), which is the most extensive deposit field of metallic nodules. Samples were taken from the Belgian, German and French license areas, but also from the APEI 3 (Area of Particular Environmental Interest 3) of the Interoceanmetal consortium associates. The combination of morphological and genetic data uncovered one new pseudotanaid genus (Beksitanais n. gen.) and 14 new species of Pseudotanais (2 of them virtual taxa). Moreover, our results suggest that spatial structuring of pseudotanaid diversity is correlated with deep-sea features, particularly the presence of fractures and seamount chains crossing the CCZ. The presence of geographical barriers delimiting species distributions has important implications for the establishment of protected areas, and the APEI3 protected area contains only one third of the total pseudotanaid species in CCZ. The specimen collection studied here is extremely valuable and represents an important first step in characterizing the diversity and distribution of pseudotanaids within the Tropical Eastern Pacific.
- Published
- 2019
- Full Text
- View/download PDF
43. Pancrustacean Evolution Illuminated by Taxon-Rich Genomic-Scale Data Sets with an Expanded Remipede Sampling.
- Author
-
Lozano-Fernandez J, Giacomelli M, Fleming JF, Chen A, Vinther J, Thomsen PF, Glenner H, Palero F, Legg DA, Iliffe TM, Pisani D, and Olesen J
- Subjects
- Animals, Gene Expression Regulation, Phylogeny, Transcriptome, Crustacea classification, Crustacea genetics, Evolution, Molecular, Genome, Insect, Genomics methods, Insect Proteins genetics
- Abstract
The relationships of crustaceans and hexapods (Pancrustacea) have been much discussed and partially elucidated following the emergence of phylogenomic data sets. However, major uncertainties still remain regarding the position of iconic taxa such as Branchiopoda, Copepoda, Remipedia, and Cephalocarida, and the sister group relationship of hexapods. We assembled the most taxon-rich phylogenomic pancrustacean data set to date and analyzed it using a variety of methodological approaches. We prioritized low levels of missing data and found that some clades were consistently recovered independently of the analytical approach used. These include, for example, Oligostraca and Altocrustacea. Substantial support was also found for Allotriocarida, with Remipedia as the sister of Hexapoda (i.e., Labiocarida), and Branchiopoda as the sister of Labiocarida, a clade that we name Athalassocarida (="nonmarine shrimps"). Within Allotriocarida, Cephalocarida was found as the sister of Athalassocarida. Finally, moderate support was found for Hexanauplia (Copepoda as sister to Thecostraca) in alliance with Malacostraca. Mapping key crustacean tagmosis patterns and developmental characters across the revised phylogeny suggests that the ancestral pancrustacean was relatively short-bodied, with extreme body elongation and anamorphic development emerging later in pancrustacean evolution., (© The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.)
- Published
- 2019
- Full Text
- View/download PDF
44. Integrative taxonomy methods reveal high mealybug (Hemiptera: Pseudococcidae) diversity in southern Brazilian fruit crops.
- Author
-
Pacheco da Silva VC, Kaydan MB, Malausa T, Germain JF, Palero F, and Botton M
- Subjects
- Animals, Brazil, DNA genetics, Hemiptera anatomy & histology, Phylogeny, Species Specificity, Classification methods, Crops, Agricultural parasitology, Fruit parasitology, Hemiptera classification
- Abstract
The Serra Gaúcha region is the most important temperate fruit-producing area in southern Brazil. Despite mealybugs (Hemiptera: Pseudococcidae) infesting several host plants in the region, there is a lack of information about the composition of species damaging different crops. A survey of mealybug species associated with commercial fruit crops (apple, persimmon, strawberry and grapes) was performed in Serra Gaúcha between 2013 and 2015, using both morphology and DNA analyses for species identification. The most abundant species were Pseudococcus viburni (Signoret), found on all four host plant species, and Dysmicoccus brevipes (Cockerell), infesting persimmon, vines and weeds. The highest diversity of mealybug species was found on persimmon trees, hosting 20 different taxa, of which Anisococcus granarae Pacheco da Silva & Kaydan, D. brevipes, Pseudococcus sociabilis Hambleton and Ps. viburni were the most abundant. A total of nine species were recorded in vineyards. Planococcus ficus (Signoret) and Pseudococcus longispinus (Targioni Tozzetti) were observed causing damage to grapes for the first time. A single species, Ps. viburni, was found associated with apples, while both Ps. viburni and Ferrisia meridionalis Williams were found on strawberry. Four of the mealybug species found represent new records for Brazil.
- Published
- 2017
- Full Text
- View/download PDF
45. Tomato root microbiota and Phytophthora parasitica-associated disease.
- Author
-
Larousse M, Rancurel C, Syska C, Palero F, Etienne C, Industri B, Nesme X, Bardin M, and Galiana E
- Subjects
- Bacteria genetics, Bacteria isolation & purification, DNA, Bacterial genetics, DNA, Ribosomal genetics, Gene Expression Regulation, Plant, Microbiota, Phylogeny, Plant Diseases, Plant Roots microbiology, RNA, Ribosomal, 16S genetics, Symbiosis, Bacteria classification, High-Throughput Nucleotide Sequencing methods, Solanum lycopersicum microbiology, Phytophthora pathogenicity, Sequence Analysis, DNA methods
- Abstract
Background: Interactions between pathogenic oomycetes and microbiota residing on the surface of the host plant root are unknown, despite being critical to inoculum constitution. The nature of these interactions was explored for the polyphagous and telluric species Phytophthora parasitica., Results: Composition of the rhizospheric microbiota of Solanum lycopersicum was characterized using deep re-sequencing of 16S rRNA gene to analyze tomato roots either free of or partly covered with P. parasitica biofilm. Colonization of the host root surface by the oomycete was associated with a shift in microbial community involving a Bacteroidetes/Proteobacteria transition and Flavobacteriaceae as the most abundant family. Identification of members of the P. parasitica-associated microbiota interfering with biology and oomycete infection was carried out by screening for bacteria able to (i) grow on a P. parasitica extract-based medium (ii), exhibit in vitro probiotic or antibiotic activity towards the oomycete (iii), have an impact on the oomycete infection cycle in a tripartite interaction S. lycopersicum-P. parasitica-bacteria. One Pseudomonas phylotype was found to exacerbate disease symptoms in tomato plants. The lack of significant gene expression response of P. parasitica effectors to Pseudomonas suggested that the increase in plant susceptibility was not associated with an increase in virulence. Our results reveal that Pseudomonas spp. establishes commensal interactions with the oomycete. Bacteria preferentially colonize the surface of the biofilm rather than the roots, so that they can infect plant cells without any apparent infection of P. parasitica., Conclusions: The presence of the pathogenic oomycete P. parasitica in the tomato rhizosphere leads to a shift in the rhizospheric microbiota composition. It contributes to the habitat extension of Pseudomonas species mediated through a physical association between the oomycete and the bacteria.
- Published
- 2017
- Full Text
- View/download PDF
46. DNA barcoding the phyllosoma of Scyllarides squammosus (H. Milne Edwards, 1837) (Decapoda: Achelata: Scyllaridae).
- Author
-
Palero F, Genis-Armero R, Hall MR, and Clark PF
- Subjects
- Animal Distribution, Animal Structures anatomy & histology, Animal Structures growth & development, Animals, Body Size, DNA genetics, DNA Barcoding, Taxonomic, Decapoda anatomy & histology, Decapoda growth & development, Ecosystem, Larva anatomy & histology, Larva classification, Larva genetics, Larva growth & development, Organ Size, Phylogeny, Decapoda classification, Decapoda genetics
- Abstract
Scyllarides has the largest number of species with commercial importance within the Scyllaridae family. As for other achelate lobsters, however, little is known of the unique long-lived planktonic phyllosoma stages of any of these tropical and temperate species. Recently, a large and diverse collection of Scyllaridae phyllosoma, compiled from cruises along the Coral Sea and spanning several years, has been analysed. Molecular evidence from DNA-barcoding and phylogenetic analyses is provided here on the identity of S. squammosus phyllosoma larvae, including stages that were previously undescribed or poorly known. As a consequence, the growth and morphological changes that occur during the mid- to late-stages of S. squammosus larval development is now well-documented. Furthermore, an additional collection of S. squammosus larvae, described by Alain Michel and thought to be no longer extant, were discovered in the crustacean collection of the Muséum national d'Histoire naturelle, Paris. This new molecular and morphological information is complemented by a review of the literature. As a result, descriptions of key larval characters by a number of authors were evaluated and appear to suggest the existence of distinct groups of larvae within Scyllarides. From a combination of adult and larval morphology, and molecular data, the results presented here revealed inconsistencies with regard to the affinities of species assigned to Scyllarides. This new evidence will contribute to future studies addressing the phylogenetic relationships within the genus.
- Published
- 2016
- Full Text
- View/download PDF
47. Temporal and spatial genetic differentiation in the crab Liocarcinus depurator across the Atlantic-Mediterranean transition.
- Author
-
Pascual M, Palero F, García-Merchán VH, Macpherson E, Robainas-Barcia A, Mestres F, Roda T, and Abelló P
- Subjects
- Animals, Gene Flow, Genetic Drift, Geography, Microsatellite Repeats genetics, Brachyura genetics, Genetic Speciation, Genetics, Population, Phylogeny
- Abstract
Spatial genetic studies often require sampling broadly separated areas, difficult to access simultaneously. Although comparing localities surveyed at different time periods might result in spurious genetic differentiation, there is a general believe on the stability of genetic structure through time, particularly if sampled localities are isolated or very distant. By analysing spatial and temporal genetic differentiation of the portunid crab Liocarcinus depurator we assessed the contribution of historical and contemporary processes on population connectivity patterns across three main oceanographic discontinuities along the Atlantic-Mediterranean transition: Gibraltar Strait, Almeria-Oran Front and Ibiza Channel. A partial fragment of the cytochrome oxidase I gene was sequenced in 366 individuals collected from localities at both sides of each discontinuity during three time periods. Although localities showed genetic fluctuations through time, a significant gradient was detected along the coast for all sampling periods. Significant inter-annual differences identified within the Alicante area, north of the Almeria-Oran Front, were associated with shifts in the relative contribution of Atlantic and Mediterranean water masses. The persistence of a clinal pattern in the Atlantic-Mediterranean transition area together with local fluctuations suggests a complex balance of dispersal and selection.
- Published
- 2016
- Full Text
- View/download PDF
48. The evolution of a key character, or how to evolve a slipper lobster.
- Author
-
Haug JT, Audo D, Charbonnier S, Palero F, Petit G, Abi Saad P, and Haug C
- Subjects
- Animals, Arthropod Antennae anatomy & histology, Fossils anatomy & histology, Germany, Phylogeny, Biological Evolution, Decapoda anatomy & histology, Decapoda classification
- Abstract
A new fossil lobster from the Cretaceous of Lebanon, Charbelicaris maronites gen. et sp. nov., is presented here, while the former species 'Cancrinos' libanensis is re-described as Paracancrinos libanensis comb. nov. P. libanensis is shown to be closer related to the contemporary slipper lobsters than to Cancrinos claviger (lithographic limestones, Jurassic, southern Germany). A finely-graded evolutionary scenario for the slipper-lobster morphotype is reconstructed based on these fossil species and extant forms. The evolutionary changes that gave rise to the current plate-like antennae of Scyllaridae, a key apomorphy of this group, are traced back through time. The antenna of what is considered the oldest slipper lobster became petaloid and consisted of about 20 fully articulated elements. For this group the name Scyllarida sensu lato tax. nov. is introduced. In a next evolutionary step, the proximal articles became conjoined and a lateral extension appeared on peduncle element 3. The entire distal petaloid region is conjoined already at the node of Verscyllarida tax. nov. In modern slipper lobsters, Neoscyllarida tax nov., the distal region is no longer petaloid in shape but asymmetrical. The study also emphasizes that exceptionally preserved fossils need to be documented with optimal documentation techniques to obtain all available information., (Copyright © 2015 Elsevier Ltd. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
49. A salt bath will keep you going? Euryhalinity tests and genetic structure of caridean shrimps from Iberian rivers.
- Author
-
González-Ortegón E, Palero F, Lejeusne C, Drake P, and Cuesta JA
- Subjects
- Animals, Genetic Variation, Genetics, Population, Palaemonidae classification, Palaemonidae genetics, Phylogeny, Phylogeography, Spain, Palaemonidae physiology, Rivers chemistry, Salinity
- Abstract
We assessed the role of euryhalinity and life-history traits on the population genetic structure of the four main caridean shrimp species from the Iberian Peninsula (Atyaephyra desmarestii, Dugastella valentina, Palaemon varians and Palaemon zariquieyi) able to complete their life cycle in freshwater/oligohaline habitats. Seawater exposure experiments indicated that A. desmarestii, D. valentina and P. zariquieyi are more sensitive to high salinity waters than P. varians and confirm the relationship between osmolality regulation and spatial distribution of species. The limited or no survival in seawater could explain the restricted distributions observed in D. valentina and P. zariquieyi, whereas the current A. desmarestii distribution could be due to either past river dynamics and/or human-mediated water transfers. Conversely, the high tolerance of P. varians to a large salinity range (euryhalinity) could explain its capacity to colonize geographically distant estuaries. In agreement with osmoregulation results, the phylogeography patterns of the cytochrome oxidase 1 (Cox 1) gene fragment revealed significant genetic differentiation among river systems whatever the species considered. Atyidae species presented higher nucleotide diversity levels than Palaemonidae species, while isolation-by-distance patterns were only found for the latter. Our results have important implications for the management and conservation of freshwater species, since the inter-catchment connectivity may affect the speciation processes., (Copyright © 2015 Elsevier B.V. All rights reserved.)
- Published
- 2016
- Full Text
- View/download PDF
50. Mealybug species from Chilean agricultural landscapes and main factors influencing the genetic structure of Pseudococcus viburni.
- Author
-
Correa MC, Lombaert E, Malausa T, Crochard D, Alvear A, Zaviezo T, and Palero F
- Subjects
- Animals, Chile, Cluster Analysis, Genetic Variation, Geography, Hemiptera classification, Microsatellite Repeats, RNA, Ribosomal, 28S genetics, Agriculture, Gene-Environment Interaction, Genetics, Population, Genome, Insect, Hemiptera genetics
- Abstract
The present study aimed to characterize the distribution of mealybug species along Chilean agro-ecosystems and to determine the relative impact of host plant, management strategy, geography and micro-environment on shaping the distribution and genetic structure of the obscure mealybug Pseudococcus viburni. An extensive survey was completed using DNA barcoding methods to identify Chilean mealybugs to the species level. Moreover, a fine-scale study of Ps. viburni genetic diversity and population structure was carried out, genotyping 529 Ps. viburni individuals with 21 microsatellite markers. Samples from 16 localities were analyzed using Bayesian and spatially-explicit methods and the genetic dataset was confronted to host-plant, management and environmental data. Chilean crops were found to be infested by Ps. viburni, Pseudococcus meridionalis, Pseudococcus longispinus and Planococcus citri, with Ps. viburni and Ps. meridionalis showing contrasting distribution and host-plant preference patterns. Ps. viburni samples presented low genetic diversity levels but high genetic differentiation. While no significant genetic variance could be assigned to host-plant or management strategy, climate and geography were found to correlate significantly with genetic differentiation levels. The genetic characterization of Ps. viburni within Chile will contribute to future studies tracing back the origin and improving the management of this worldwide invader.
- Published
- 2015
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.