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Beneficial rhizosphere microorganisms are widely employed to shield crops from underground pathogen infections. In this study, we challenge this conventional idea by employing rhizosphere soil bacteria to safeguard kiwi plants against the above-ground canker, caused by Pseudomonas syringae pv. actinidiae (Psa). Microbiome comparisons were conducted in different resistant cultivars Actinidia chinensis var. deliciosa 'Hayward' and A. chinensis var. chinensis 'Hongyang'. Our findings reveal the most notable disparity in the rhizosphere soil microbiome, with the Flavobacterium significantly enriched in the rhizosphere soil of more resistant cultivar, 'Hayward'. We isolated Flavobacterium isolates and observed their efficacy in preventing Psa infection, which is further confirmed in field trial by using a representative strain Flavobacterium soyae F55. Furthermore, undescribed gene clusters responsible for antimicrobial metabolite biosynthesis were identified in F. soyae F55, and F. soyae F55 growth was evidently promoted by the root exudates of 'Hayward'. The results underscore the potential of beneficial rhizosphere soil bacteria in protection against above-ground disease. A study highlights the potential of beneficial rhizosphere soil bacteria not only for controlling soil-borne diseases but also for providing cross-niche protection against above-ground diseases. [ABSTRACT FROM AUTHOR]

Both Metarhizium robertsii ARSEF 2575 (Mr2575) and Metarhizium anisopliae ARSEF 549 (Ma549) infect a range of insects whilst also interacting with plants; however, little is known about the traits that affect the competitive ability of different strains. We examined the interactions between Mr2575 and Ma549 in culture and during co-infection of plants (Arabidopsis thaliana) and insects. Mr2575 outcompetes Ma549 under nutrient-limiting conditions, including root exudates, giving it a priority advantage on Arabidopsis roots. However, during co-infection of Manduca sexta or Drosophila melanogaster, Ma549's higher blastospore production enhanced its competitive ability within the host. In large M. sexta (fifth instar), blastospores facilitate dispersal, suppress host melanization and prevent Mr2575 from spreading from infection sites, reducing conidia production. However, colonization of smaller hosts such as first instar M. sexta and D. melanogaster did not provide Ma549 with a competitive advantage, as conidial production was dependent on retaining control of the cuticle through which conidiating hyphae emerge. Unexpectedly, Ma549 and Mr2575 segregate within hosts, suggesting resource partitioning with Mr2575 predominating in the thoraxes of Drosophila, especially in females, and Ma549 in the abdomen. In fifth instar M. sexta, Mr2575 was most prevalent around spiracles and the front end of segments, despite Ma549 and Mr2575 having similar susceptibility to hypoxia. Dispersing conidia homogeneously into the hemocoel of fifth instar M. sexta eliminated the blastospore production advantage, making Ma549 and Mr2575 equally competitive, with strict partitioning of Mr2575 at the anterior and Ma549 at the posterior ends of segments. As Metarhizium species have multiple roles in natural ecosystems and agroecosystems these discoveries are relevant to understanding their impact on maintaining biodiversity and for exploiting them to enhance food security. Author summary: Metarhizium spp. are keystone fungi providing essential ecosystem services as plant symbionts and insect pathogens, yet little is known about how different strains interact. We analyzed two strains with different insect-killing strategies: Mr2575 kills insects with toxins before colonizing cadavers, whereas Ma549 rapidly colonizes living insects. Ma549's rapid growth within insects serves as a strong anti-competitive strategy in larger insects. However, in smaller insects, Mr2575 remains competitive in reproductive potential (spore production on cadavers) if it maintains control of the cuticle through which it entered the insect. Consequently, small hosts may be more critical than large hosts for preserving pathogen diversity. Unexpectedly, Mr2575 and Ma549 partition insect hosts between them, promoting coexistence. We also investigated trade-offs between virulence traits and plant colonization traits, finding that Mr2575's rapid growth in sparse nutrients enhances its competitiveness on plant roots. Thus, Mr2575 may be more competitive on plants, while Ma549 excels in large insects, with both strains showing similar competitiveness in small insects. These insights are important for understanding Metarhizium species' roles in biodiversity and their potential to boost food security in natural and agricultural ecosystems. [ABSTRACT FROM AUTHOR]

Introduction: Microplastic pollution has emerged as a significant global change factor, with the potential to alter the biological, physicochemical properties of soil and to subsequently affect plant growth. Despite growing recognition of the impacts of microplastic pollution, the mechanisms by which microplastics modify plant leaf chemistry and influence allelopathic interactions among co-existing plant species remain unclear. Methods: We used the native perennial forb Achyranthes bidentata and the invasive annual forb Amaranthus spinosus as focal species. We grew the two species with and without competition with each other. This setup was further combined with a treatment involving the addition of polyethylene (PE). We then testd the effects of aqueous extract on seed germination and seedling growth for five invasive and five native species. Subsequently, metabolomic analysis was conducted on the aqueous extracts, in which significant allelopathic effects were observed on test species. Results and discussion: The presence of PE microplastics enhanced the biomass of both Achyranthes and Amaranthus under competitive and non-competitive growth conditions. Furthermore, PE microplastics were found to induce a negative allelopathic effect for the native plant Achyranthes on co-occurring plants, which appeared to be mediated through changes in leaf chemistry. Bisdemethoxycurcumin, ethylparaben, salicin 6'-sulfate and 5-hydroxy-3',4',7-trimethoxyflavone glucoside were proven important compounds for allelopathic enhancement. Overall, these results suggest that microplastic pollution has the capability to influence the co-existence of invasive and native plants by altering their allelopathic potential. This insight into the interactions between microplastics and plant allelopathy provides a novel perspective on how microplastic pollution could modify plant species interactions and ecosystem dynamics. Future studies could aim to answer how microplastics might affect plant root exudates and whether this process would mediate biological invasion. [ABSTRACT FROM AUTHOR]

Introduction: There is a close and complex interaction between the elements in the aboveground-underground ecosystem during the growth and development of plants. Specifically, when the aboveground part of plants is infected by pathogens, it induces the plant rhizosphere to synthesize specific root exudates. Consequently, a group of beneficial rhizosphere soil bacteria is recruited to help plants resist diseases. However, the changes in the rhizosphere soil bacterial community of plants under infection by oomycete pathogens remain unknown. Methods: Three experimental treatments were set up in this experiment: soils inoculated with P. nicotianae , no-inoculation with P. nicotianae , and a control. The control treatment was composed of soils without transplanted tobacco plants, with the pathogen inoculated twice at an interval of eight days to ensure a successful P. nicotianae infection. P. nicotianae inoculation treatments were designed using the hyphal block inoculation method. In the non-inoculation treatment, tobacco plants were grown normally without pathogen inoculation. The tobacco plants were grown in a greenhouse. Results: This study demonstrates that tobacco plants recruit microorganisms at the rhizosphere level as a defense mechanism against disease after infection by the oomycete pathogen Phytophthora nicotianae. Specific rhizosphere soil bacteria were screened in vitro to promote tobacco growth in a biofilm-forming manner, which induced the systemic resistance of the plants to P. nicotianae. The recruitment of rhizosphere soil bacteria to the inter-root zone of tobacco plants after infection by P. nicotianae can help subsequently cultivated tobacco plants in the same soil resist pathogen infestation. Discussion: In conclusion, the present study confirms that infestation caused by oomycete pathogens alters the composition of the plant rhizosphere soil bacterial community and recruits a specific group of beneficial microorganisms that induce disease resistance and promote plant growth, thereby maximizing the protection of progeny grown in the same soil against the disease. [ABSTRACT FROM AUTHOR]

Wildfire is a disturbance expected to increase in frequency and severity, changes that may impact carbon (C) dynamics in the soil ecosystem. Fire changes the types of C sources available to soil microbes, increasing pyrogenic C and coarse downed wood, and if there is substantial tree mortality, decreasing C from root exudates and leaf litter. To investigate the impact of this shift in the composition of C resources on microbial processes driving C cycling, we examined microbial activity in soil sampled from an Oregon burn 1 year after fire from sites spanning a range in soil burn severity from unburned to highly burned. We found evidence that postfire rhizosphere priming loss may reduce soil C loss after fire. We measured the potential activity of C‐acquiring and nitrogen (N)‐acquiring extracellular enzymes and contextualized the microbial resource demand using measurements of mineralizable C and N. Subsurface mineralizable C and N were unaltered by fire and negatively correlated with hydrolytic extracellular enzyme activity (EEA) in unburned, but not burned sites. EEA was lower in burned sites by up to 46%, but only at depths below 5 cm, and with greater decreases in sites with high soil burn severity. These results are consistent with a subsurface mechanism driven by tree mortality. We infer that in sites with high tree mortality, subsurface EEAs decreased due to loss of rhizosphere priming and that inputs of dead roots contributed to mineralizable C stabilization. Core Ideas: Postfire extracellular enzyme activity decreases were observed only in sub‐soils of higher burn severity sites.In high tree mortality burns, loss of rhizosphere priming may slow decomposition and mitigate carbon loss.This work challenges conventional views that fire affects only the surface of soils via direct heat and combustion. Plain Language Summary: Wildfires are expected to become more severe and frequent, which may change how much carbon is stored in the soil. Fire changes the relative amount of leaves, wood, and charcoal available for soil microbes to decompose, which may affect soil microbial activity and soil carbon as a result. In this study, we evaluated the effect of fire on soil microbial decomposition activity. We found burned areas had less microbial decomposition activity than unburned areas, but only below soil depths of 5 cm in areas where most trees died after the fire. This was a surprising result because fire heat and combustion only directly affects the surface soil. We attribute the lower activity in higher burn severity subsurface soils to greater dead roots and a loss of root secretions, which are known to boost decomposition. Reduced decomposition could partly offset fire‐caused carbon loss from the ecosystem. More research is needed to clarify the long‐term effect on soil carbon. [ABSTRACT FROM AUTHOR]

SUMMARY The rate of sucrose export from leaves is a major factor in balancing whole‐plant carbon and energy partitioning. A comprehensive study of its dynamics and relationship to photosynthesis, sink demand, and other relevant processes is hampered by the shortcomings of current methods for measuring sucrose phloem loading. We utilize the ability of sucrose transporter proteins, known as SUCs or SUTs, to specifically transport the fluorescent molecule esculin in a novel assay to measure phloem loading rates. Esculin was administered to source leaves and its fluorescence in the leaf extract was measured after 1 or 2 h. Dicot plants with an active phloem loading strategy showed an export‐dependent reduction of esculin fluorescence. Relative leaf esculin export rates correlated with leaf export rates of isotopic carbon and phloem exudate sucrose levels. We used esculin experiments to examine the effects of phytohormones on phloem loading in Arabidopsis, showing, for example, that auxin induces phloem loading while cytokinin reduces it. Transcriptional regulation of AtSUC2 by AUXIN RESPONSE FACTOR1 (ARF1) corroborated the link between auxin signaling and phloem loading. Unlike established methods, the esculin assay is rapid and does not require specialized equipment. Potential applications and limitations of the esculin assay are discussed. [ABSTRACT FROM AUTHOR]

Cetoniidae (Coleoptera), known as flower and fruit beetles, form a diverse group, feed on nectar, pollen, plant exudates, and are highly attracted to fermented fruits. To evaluate their diversity in natural and agricultural areas, traps baited with fermented fruits are used. The objective of this study was to compare the effectiveness of various types of fruit used as bait, with or without the addition of sugarcane juice to accelerate fruit fermentation, on the assessment of Cetoniidae diversity in the Brazilian Cerrado. The study was conducted in two conservation units in Brasília (DF, Brazil). Two experiments were conducted, the first aiming to select the most attractive fruits (banana, pineapple, mango, grape, or cagaita), and the second to verify whether there is interference of sugarcane juice in the fruit fermentation process and, consequently, in the attractiveness to Cetoniidae. The chemical profiles of the types of bait were evaluated by identifying and quantifying the main volatile organic compounds released by the fruit traps. Insect collections were conducted weekly using fruit‐baited traps for 1 month, without interruption. We found that the diversity estimate of Cetoniidae was higher for banana‐based baits relative to grape and cagaita fruit, but not relative to pineapple, mango, and sugarcane juice. Additionally, no increase in attractiveness was observed with the addition of sugarcane juice to banana, pineapple, and mango bait. Most compounds in the fruit extracts belong to alcohol, ester, and terpene functional groups. Our results suggest that banana, pineapple, mango, and sugarcane juice, used alone, may be used for Cetoniidae diversity studies, and that banana bait seems to be the most suitable for Cetoniidae collection in the Cerrado, because it enables the collection of a high diversity of species and also of species considered rare. [ABSTRACT FROM AUTHOR]

Licorice roots can release low-molecular-weight oxalic acid (OA). However, the allelopathic effects of OA on licorice are unknown. This study presents an investigation of the effects of exogenous OA treatment on licorice roots through transcriptomic and physiological analyses. Transcriptomic analysis demonstrated that following OA treatment, differentially expressed genes (DEGs) were primarily involved in the phenylpropanoid metabolism pathway. At 6 h, the expression levels of genes associated with this pathway, such as PAL, CHS, POD, cellulase, CPY, MYB, and bHLH, were upregulated. The metabolism of related metabolites, such as flavonoids and lignin, also increased. These findings suggest that the phenylpropanoid metabolism pathway may play a significant role in the response to OA treatment. In addition, the activities of GST, CAT, and POD markedly increased, whereas the content of H2O2 gradually decreased, indicating that OA can activate the antioxidant protective capabilities of licorice roots. These findings suggest that OA may enhance the antioxidant defense of licorice root, as well as the effectiveness of its flavonoid constituents (to a certain degree). Our findings provide valuable theoretical insight into the allelopathic effects of licorice roots. [ABSTRACT FROM AUTHOR]

Introduction: The rhizosphere is the zone of soil surrounding plant roots that is directly influenced by root exudates released by the plant, which select soil microorganisms. The resulting rhizosphere microbiota plays a key role in plant health and development by enhancing its nutrition or immune response and protecting it from biotic or abiotic stresses. In particular, plant growth-promoting rhizobacteria (PGPR) are beneficial members of this microbiota that represent a great hope for agroecology, since they could be used as bioinoculants for sustainable crop production. Therefore, it is necessary to decipher the molecular dialog between roots and PGPR in order to promote the establishment of bioinoculants in the rhizosphere, which is required for their beneficial functions. Methods: Here, the ability of root exudates from rapeseed (Brassica napus), pea (Pisum sativum), and ryegrass (Lolium perenne) to attract and feed three PGPR (Bacillus subtilis, Pseudomonas fluorescens, and Azospirillum brasilense) was measured and compared, as these responses are directly involved in the establishment of the rhizosphere microbiota. Results: Our results showed that root exudates differentially attracted and fed the three PGPR. For all beneficial bacteria, rapeseed exudates were the most attractive and induced the fastest growth, while pea exudates allowed the highest biomass production. The performance of ryegrass exudates was generally lower, and variable responses were observed between bacteria. In addition, P. fluorescens and A. brasilense appeared to respond more efficiently to root exudates than B. subtilis. Finally, we proposed to evaluate the compatibility of each plant–PGPR couple by assigning them a “love match” score, which reflects the ability of root exudates to enhance bacterial rhizocompetence. Discussion: Taken together, our results provide new insights into the specific selection of PGPR by the plant through their root exudates and may help to select the most effective exudates to promote bioinoculant establishment in the rhizosphere. [ABSTRACT FROM AUTHOR]

Summary Cover crop integration into grain crop rotations is a promising strategy for mitigating nematode‐induced diseases in agriculture. However, the precise mechanisms underlying this phenomenon remain elusive. Here, we first assessed the impact of five commonly used cover crops on the suppression of rice root‐knot nematodes (RKNs). We then chose ryegrass as a model to explore the mechanistic basis of the suppression effect. Contrary to expectations, while ryegrass rotation significantly enhances soil fertility, this increased fertility has minimal impact on RKN suppression. Furthermore, neither integrated ryegrass residues nor root exudates exhibit direct toxicity towards RKNs. We demonstrated that ryegrass rotation primarily suppresses RKNs by enriching beneficial soil microbiota. By complementing with isolated bacteria strains, we further demonstrated that ryegrass‐enriched bacteria not only directly reduce RKN infectivity and preference, but also activate plant immunity via the OsLRR‐RLK‐MAPK‐WRKY‐JA cascade, thereby diminishing RKN infection. Our study highlights the crucial role of soil microbiota in plant–nematode interactions, challenging conventional views on the direct effects of cover crops in nematode suppression. It offers a mechanistic understanding of the regulation potential and action modes of cover crops in mitigating nematode diseases, providing valuable insights for sustainable agriculture. [ABSTRACT FROM AUTHOR]

Background: Soybean seeds are rich in protein and oil. The selection of varieties that produce high-quality seeds has been one of the priorities of soybean breeding programs. However, the influence of improved seed quality on the rhizosphere microbiota and whether the microbiota is involved in determining seed quality are still unclear. Here, we analyzed the structures of the rhizospheric bacterial communities of 100 soybean varieties, including 53 landraces and 47 modern cultivars, and evaluated the interactions between seed quality traits and rhizospheric bacteria. Results: We found that rhizospheric bacterial structures differed between landraces and cultivars and that this difference was directly related to their oil content. Seven bacterial families (Sphingomonadaceae, Gemmatimonadaceae, Nocardioidaceae, Xanthobacteraceae, Chitinophagaceae, Oxalobacteraceae, and Streptomycetaceae) were obviously enriched in the rhizospheres of the high-oil cultivars. Among them, Oxalobacteraceae (Massilia) was assembled specifically by the root exudates of high-oil cultivars and was associated with the phenolic acids and flavonoids in plant phenylpropanoid biosynthetic pathways. Furthermore, we showed that Massilia affected auxin signaling or interfered with active oxygen-related metabolism. In addition, Massilia activated glycolysis pathway, thereby promoting seed oil accumulation. Conclusions: These results provide a solid theoretical basis for the breeding of revolutionary soybean cultivars with desired seed quality and optimal microbiomes and the development of new cultivation strategies for increasing the oil content of seeds. 7196FtKvsnPuUrhB77D9vL Video Abstract [ABSTRACT FROM AUTHOR]

The present study reviews the knowledge to date on the carrot cyst nematode Heterodera carotae, which has become the primary threat to the carrot sector following the withdrawal of the last chemical soil fumigants in Europe. A keyword co-occurrence network was used to structure this review into five research areas: i) biology and epidemiology of H. carotae; ii) molecular identification and phylogeny; iii) population genetics and genomics; iv) control methods and strategies; and v) root exudates and hatching stimulation. Our findings indicate that H. carotae is an under-studied plant-parasitic nematode species, with several identified alternative control methods that require further investigation. [ABSTRACT FROM AUTHOR]

Understanding the interactions between fungal plant pathogens and host roots is crucial for developing effective disease management strategies. This study investigates the molecular mechanisms underpinning the chemotropic responses of the maize anthracnose fungus Colletotrichum graminicola to maize root exudates. Combining the generation of a deletion mutant with monitoring of disease symptom development and detailed analysis of chemotropic growth using a 3D-printed device, we identify the 7-transmembrane G-protein coupled receptor (GPCR) CgSte3 as a key player in sensing both plant-derived class III peroxidases and diterpenoids. Activation of CgSte3 initiates signaling through CgSo, a homolog to the Cell Wall Integrity Mitogen-Activated Protein Kinase (CWI MAPK) pathway scaffold protein identified in other filamentous fungi, facilitating the pathogen's growth towards plant defense molecules. The NADPH oxidase CgNox2 is crucial for peroxidase sensing but not for diterpenoid detection. These findings reveal that CgSte3 and CWI MAPK pathways are central to C. graminicola's ability to hijack plant defense signals, highlighting potential targets for controlling maize anthracnose. [ABSTRACT FROM AUTHOR]

Background: Volatile organic compounds (VOCs) released by plants can act as signaling molecules mediating ecological interactions. Therefore, the study of VOCs mediated intra- and interspecific interactions with downstream plant physiological responses is critical to advance our understanding of mechanisms underlying information exchange in plants. Here, we investigated how plant-emitted VOCs affect the performance of an interspecific neighboring plant via induced shifts in root exudate chemistry with implications for root-associated microbiota recruitment. Results: First, we showed that VOCs emitted by potato-onion plants stimulate the growth of adjacent tomato plants. Then, we demonstrated that this positive effect on tomato biomass was attributed to shifts in the tomato rhizosphere microbiota. Specifically, we found potato-onion VOCs to indirectly affect the recruitment of specific bacteria (e.g., Pseudomonas and Bacillus spp.) in the tomato rhizosphere. Second, we identified and validated the compound dipropyl disulfide as the active molecule within the blend of potato-onion VOCs mediating this interspecific plant communication. Third, we showed that the effect on the tomato rhizosphere microbiota occurs via induced changes in root exudates of tomato plants caused by exposure to dipropyl disulfide. Last, Pseudomonas and Bacillus spp. bacteria enriched in the tomato rhizosphere were shown to have plant growth-promoting activities. Conclusions: Potato-onion VOCs—specifically dipropyl disulfide—can induce shifts in the root exudate of adjacent tomato plants, which results in the recruitment of plant-beneficial bacteria in the rhizosphere. Taken together, this study elucidated a new mechanism of interspecific plant interaction mediated by VOCs resulting in alterations in the rhizosphere microbiota with beneficial outcomes for plant performance. 4wKeniGUxY9GPejLMpvDe9 Video Abstract [ABSTRACT FROM AUTHOR]

Background Aims Methods Results Conclusions Liquid organic fertilizer (LOF) and root exudates contain easily decomposable carbon that can stimulate microbial growth. It is unknown what role the amount of organic matter (OM) in the growing media, and potential interactions between root presence and LOF, might play in enhancing the breakdown of OM.The aim was to better understand how the decomposition rate of plant litter is affected by added fertilizer, plant presence, and growing media OM content.A container experiment was conducted with and without tomato plants (Solanum lycopersicum L.; Heinz 5608 variety) present to evaluate the effect of three one‐time fertilizer additions (no fertilizer, LOF, and synthetic fertilizer) on litter decomposition rate. The equivalent amount of nitrogen (N), phosphorus (P), and potassium(K) was added in both fertilizer treatments. The experiment was conducted using two growing media, one containing high OM and one with negligible OM.The presence of tomato roots stimulated litter decomposition in high OM media, but not in low OM media. Adding LOF did not affect decomposition in either growing medium. Adding synthetic fertilizer led to a negative priming effect in low OM media when roots were present. The rate of decomposition was not affected by root traits.When ample OM was available, the presence of plant roots had a strong positive impact on litter decomposition. In both low and high OM media, a one‐time addition of fertilizer had minimal or negative effects on litter decomposition. We speculate that the continuous nature of root exudation leads to sustained changes in the microbial population (both community composition and size). Boosting root length growth via the one‐time addition of inorganic fertilizer when OM was negligible allowed the plant to outcompete decomposing microbes for N, possibly leading to selection for microbes that primarily feed on exudates, which resulted in retarded litter decomposition rates. In conclusion, as adding inorganic fertilizer stimulated plant and root growth more than adding the equivalent nutrients in LOF, particularly in growth media with a high OM content, it is better to add inorganic nutrients than LOF to stimulate OM breakdown when plants are present. [ABSTRACT FROM AUTHOR]

Despite the essential role of nitrogen fertilizers in achieving high crop yields, current application practices often exhibit low efficiency. Optimizing nitrogen (N) fertilization in agriculture is, therefore, critical for enhancing crop productivity while ensuring sustainable food production. This study investigates the effects of nitrification inhibitors (Nis) such as Dimethyl Pyrazole Phosphate (DMPP) and Dimethyl Pyrazole Fulvic Acid (DMPFA), plant growth-promoting bacteria inoculation, and phosphorus (P) application on the soil-plant-microbe system in maize. DMPFA is an organic nitrification inhibitor that combines DMP and fulvic acid for the benefits of both compounds as a chelator. A comprehensive rhizobox experiment was conducted, employing varying levels of P, inoculant types, and Nis, to analyze the influence of these factors on various soil properties, maize fitness, and phenotypic traits, including root architecture and exudate profile. Additionally, the experiment examined the effects of treatments on the bacterial and fungal communities within the rhizosphere and maize roots. Our results showed that the use of Nis improved plant nutrition and biomass. For example, the use of DMPFA as a nitrification inhibitor significantly improved phosphorus use efficiency by up to 29%, increased P content to 37%, and raised P concentration in the shoot by 26%, compared to traditional ammonium treatments. The microbial communities inhabiting maize rhizosphere and roots were also highly influenced by the different treatments. Among them, the N treatment was the major driver in shaping bacterial and fungal communities in both plant compartments. Notably, Nis reduced significantly the abundance of bacterial groups involved in the nitrification process. Moreover, we observed that each experimental treatment employed in this investigation could select, promote, or reduce specific groups of beneficial or detrimental soil microorganisms. Overall, our results highlight the intricate interplay between soil amendments, microbial communities, and plant nutrient dynamics, suggesting that Nis, particularly DMPFA, could be pivotal in bolstering agricultural sustainability by optimizing nutrient utilization. [ABSTRACT FROM AUTHOR]

Background: The root-associated microbiomes are crucial in promoting plant growth and development through symbiotic interactions with their hosts. Plants may shape their microbiomes by secreting specific root exudates. However, the potential mechanisms how plant species determine root exudates and drive microbiome assembly have been little studied. In this study, three wild tobaccos and one cultivated tobacco were used to investigate the commonalities and differences of both root-associated microbiomes and root exudates. Results: Amplicon sequencing results suggested that tobacco species significantly affected microbial communities in both the rhizosphere and root endosphere, with the strongest impact on the fungal community in the root endosphere. The microbial networks of wild tobacco species were more stable than that of the cultivated tobacco, and fungal members played a more important role in the networks of wild tobacco species, while bacterial members did so in the cultivated tobacco. The rhizosphere bacteria of wild tobacco species showed a higher functional diversity than that of the cultivated tobacco, while the bacteria in the root endosphere presented a contrary pattern. Metabolomics analysis showed significant differences in the composition and abundance of root exudates among the four tobacco species, and the greatest difference was found between the three wild species and the cultivated one. Correlation analysis showed the strongest correlation between metabolites and rhizosphere bacteria, in which O-benzoic acid (2-methoxybenzoic acid) had the most positive correlations with rhizosphere bacteria, while β-ureidoisobutenoic acid had the most negative correlations with rhizosphere bacteria. The rhizosphere bacteria Streptomyces, Hydrophilus and Roseobacter had the strongest positive correlations with metabolites, and the rhizosphere bacterium Nitrobacter had the most negative correlations with metabolites. Conclusion: This study revealed the differences of microbial communities and root exudates in the rhizosphere and root endosphere of four tobacco species, which can further improve our understanding of plant–microbiome interactions during crop domestication. [ABSTRACT FROM AUTHOR]

Introduction: Root exudates act as the "language" of plant-soil communication, facilitating crucial interactions, information exchange, and energy transfer between plants and soil. The interactions facilitated by root exudates between plants and microorganisms in the rhizosphere are crucial for nutrient uptake and stress resilience in plants. However, the mechanism underlying the interaction between root exudates and rhizosphere microorganisms in desert plants under drought conditions remains unclear, especially among closely related species. Methods: To reveal the ecological strategies employed by the genus Haloxylon in different habitats. Using DNA extraction and sequencing and UPLC-Q-Tof/MS methods, we studied root exudates and soil microorganisms from two closely related species, Haloxylon ammodendron (HA) and Haloxylon persicum (HP), to assess differences in their root exudates, soil microbial composition, and interactions. Results: Significant differences were found in soil properties and root traits between the two species, among which soil water content (SWC) and soil organic carbon (SOC) in rhizosphere and bulk soils (P < 0.05). While the metabolite classification of root exudates was similar, their components varied, with terpenoids being the main differential metabolites. Soil microbial structure and diversity also exhibited significant differences, with distinct key species in the network and differential functional processes mainly related to nitrogen and carbon cycles. Strong correlations were observed between root exudatemediated root traits, soil microorganisms, and soil properties, although the complex interactions differed between the two closely relative species. The primary metabolites found in the network of HA include sugars and fatty acids, while HP relies on secondary metabolites, steroids and terpenoids. Discussion: These findings suggest that root exudates are key in shaping rhizosphere microbial communities, increasing microbial functionality, fostering symbiotic relationships with hosts, and bolstering the resilience of plants to environmental stress. [ABSTRACT FROM AUTHOR]

The rhizosheath, the layer of soil tightly attached to the roots, protects plants against abiotic stress and other adverse conditions by providing a bridge from the plant root system to the soil. It reduces the formation of air gaps between the root and soil and facilitates the transportation of water at the root–soil interface. It also serves as a favourable niche for plant-growth-promoting rhizobacteria in the surrounding soil, which facilitate the absorption of soil water and nutrients. This review compares the difference between the rhizosheath and rhizosphere, and summarises the molecular and physiological mechanisms of rhizosheath formation, and identifying the causes of rhizosheath formation/non-formation in plants. We summarise the chemical and physical factors (root hair, soil-related factors, root exudates, and microorganisms) that determine rhizosheath formation, and focus on the important functions of the rhizosheath in plants under abiotic stress, especially in drought stress, phosphorus deficiency, aluminium stress, and salinity stress. Understanding the roles played by the rhizosheath and the mechanisms of its formation provides new perspectives for improving plant stress tolerance in the field, which will mitigate the increasing environmental stress conditions associated with on-going global climate change. [ABSTRACT FROM AUTHOR]

Rice allelopathy is a natural method of weed control that is regarded as an eco-friendly practice in agroecology. The root growth of allelopathic rice at the seedling stage plays an important role in its weed control. Our study characterizes a plant hormone that promotes root growth, abscisic acid (ABA), to explore its role in the induction of rice allelopathy. Increasing the root morphology traits (root length, root tip number, and root biomass) in rice using different concentrations of exogenous ABA resulted in increased inhibitory ratios against barnyard grass (Echinochloa crus-galli), both in a hydroponic experiment and pot test. In particular, the relative proportion of induced allelopathy to total allelopathy in non-allelopathic rice Lemont (Le) was higher than that in allelopathic rice PI31277 (PI). The total content of phenolic acid, which is an important allelochemical in rice, as previously reported, was significantly elevated in the root exudates of both PI and LE. The gene expression levels of OsPAL, OsC4H, and OsCOL related to phenolic acid synthesis were also up-regulated, with a higher regulatory fold in PI. ABA also increased the expression of OsKSL4 and CYP75B4 involved in the biosynthesis of momilactone B and tricin. Moreover, low concentrations of exogenous ABA mainly positively regulate the expression of OsIAA11, an AUX/IAA transcription factor gene, in the root of PI and Le. These findings suggest that the application of ABA could significantly enhance the weed-suppressive activity of both rice cultivars through regulating root growth and the synthesis of allelochemicals secreted by rice roots, providing an option for the improvement of rice allelopathy through chemical induction. [ABSTRACT FROM AUTHOR]

The morphogenesis of higher plants requires communication among distant organs throughout vascular tissues (xylem and phloem). Numerous investigations have demonstrated that phloem also act as a distribution route for signalling molecules being observed that different macromolecules translocated by the sap, including nucleic acids and proteins, change under stress situations. The participation of extracellular vesicles (EVs) in this communication has been suggested, although little is known about their role. In fact, in the last decade, the presence of EVs in plants has originated a great controversy, where major concerns arose from their origin, isolation methods, and even the appropriate nomenclature for plant nanovesicles. Phloem sap exudates from melon plants, either aphid‐free or infested with Aphis gossypii, were collected by stem incision. After sap concentration (Amicon), phloem EVs (PhlEVs) were isolated by size exclusion chromatography. PhlEVs were characterised using Nanoparticle Tracking Analysis, Transmission electron microscopy and proteomic analysis. Here we confirm the presence of EVs in phloem sap in vivo and the detection of changes in the particles/protein ratio and composition of PhlEVs in response to insect feeding, revealing the presence of typical defence proteins in their cargo as well as components of the proteasome complex. PhlEVs from infested plants showed lower particles/protein ratio and almost two times more proteolytic activity than PhlEVs from aphid‐free plants. In both cases, such activity was inhibited in a dose‐dependent manner by the proteasome inhibitor MG132. Our results suggest that plants may use this mechanism to prepare themselves to receive infectious agents and open up the possibility of an evolutionary conserved mechanism of defence against pathogens/stresses in eukaryotic organisms. [ABSTRACT FROM AUTHOR]

Interactions between plants and soil microbial communities that benefit plant growth and enhance nutrient acquisition are driven by the selective release of metabolites from plant roots, or root exudation. To investigate these plant-microbe interactions, we developed a photoaffinity probe based on sorgoleone (sorgoleone diazirine alkyne for photoaffinity labeling, SoDA-PAL), a hydrophobic secondary metabolite and allelochemical produced in Sorghum bicolor root exudates. We applied SoDA-PAL to the identification of sorgoleone-binding proteins in Acinetobacter pittii SO1, a potential plant growth-promoting microbe isolated from sorghum rhizosphere soil. Competitive photoaffinity labeling of A. pittii whole cell lysates with SoDA-PAL identified 137 statistically enriched proteins, including putative transporters, transcriptional regulators, and a subset of proteins with predicted enzymatic functions. We performed computational protein modeling and docking with sorgoleone to prioritize candidates for experimental validation and then confirmed binding of sorgoleone to four of these proteins in vitro: the a/ß fold hydrolase SrgB (OH685_09420), a fumarylacetoacetase (OH685_02300), a lysophospholipase (OH685_14215), and an unannotated hypothetical protein (OH685_18625). Our application of this specialized sorgoleone-based probe coupled with structural bioinformatics streamlines the identification of microbial proteins involved in metabolite recognition, metabolism, and toxicity, widening our understanding of the range of cellular pathways that can be affected by a plant secondary metabolite. IMPORTANCE Here, we demonstrate that a photoaffinity-based chemical probe modeled after sorgoleone, an important secondary metabolite released by sorghum roots, can be used to identify microbial proteins that directly interact with sorgoleone. We applied this probe to the sorghum-associated bacterium Acinetobacter pittii and showed that probe labeling is dose-dependent and sensitive to competition with purified sorgoleone. Coupling the probe with proteomics and computational analysis facilitated the identification of putative sorgoleone binders, including a protein implicated in a conserved pathway essential for sorgoleone catabolism. We anticipate that discoveries seeded by this workflow will expand our understanding of the molecular mechanisms by which specific metabolites in root exudates shape the sorghum rhizosphere microbiome. [ABSTRACT FROM AUTHOR]

Coral mucus, teeming with organic matter, releases nutrients and microorganisms, affecting element cycling and microbial communities in coral reefs. While terrestrial ecosystems exhibit well‐studied priming effects from root exudates, the influence of mucus in marine environments, particularly in coral reefs, remains underexplored. We hypothesize that coral mucus, through its nutrients and microbes, stimulates the surrounding microorganisms, regulating carbon metabolism and thus contributing to high coral reef productivity. Initially, natural samples (Acropora pruinosa mucus, seawater, and sediment) were collected for metagenomic assessment of microbial communities and functions. Results showed significant differences in microbial diversity, community structures, co‐occurrence modes, and unique functions among mucus, seawater, and sediment. Subsequent laboratory experiments demonstrated mucus's substantial influence on surrounding microorganisms. Analyses, including 16S rRNA sequencing and Eco‐plate results, revealed that mucus regulates microbial composition and activities. Quantitative gene‐chip analysis showed significant increase in the functional genes related to carbon fixation (e.g., the 3‐hydroxypropionate cycle) and degradation (e.g., pectin and hemicellulose hydrolysis) by 55.81% and 65.48%, respectively. Partial least squares path modeling identified mucus nutrients and microbial community composition as key contributors to carbon metabolic potential. This research confirms that mucus acts as a trigger, reshaping microbial profiles around corals and enhancing carbon utilization efficiency, highlighting its essential role in carbon metabolism and the maintenance of high productivity in coral reef ecosystems. [ABSTRACT FROM AUTHOR]

The niche of aphids is largely defined by their consumption of plant phloem sap and its composition, including nutrients and specialized metabolites. Niche construction is the change of the environment by organisms, which may influence the fitness of these organisms and their offspring. To better understand interactions between plants and aphids, it is necessary to investigate whether aphids modify the chemical composition of the phloem sap of their host plants and whether conspecifics are affected by previous infestation. In the current study, ears of wheat (Triticum aestivum) plants were infested with clonal lineages of the English grain aphid (Sitobion avenae) or were left uninfested. The metabolic composition of ear phloem sap exudates was analyzed through amino acid profiling and metabolic fingerprinting. Aphids of the clonal lineages were either put on previously aphid-infested or on uninfested ears and their colony sizes followed over time. Furthermore, it was investigated whether aphids choose one treatment group over another. Sitobion avenae infestation affected the relative concentrations of some metabolites in the phloem exudates of the ears. Compared to uninfested plants, the relative concentration of asparagine was higher after aphid infestation. Colonies grew significantly larger on previously aphid-infested ears, which the aphids also clearly chose in the choice experiment. The pronounced positive effect of previous infestation on aphid colonies indicates niche construction, while the choice of these constructed niches reveals niche choice by S. avenae on wheat. The interplay between these different niche realization processes highlights the complexity of interactions between aphids and their hosts. [ABSTRACT FROM AUTHOR]

Australian saltbush (Atriplex spp.) survive in exceptionally saline environments and are often used for pasture in semi-arid areas. To investigate the impact of salinity on saltbush root morphology and root exudates, three Australian native saltbush species (Atriplex nummularia , Atriplex amnicola , and Atriplex vesicaria) were grown in vitro in optimised sterile, semi-hydroponic systems in media supplemented with different concentrations of salt (NaCl). Histological stains and chromatographic techniques were used to characterise the root apical meristem (RAM) type and root exudate composition of the saltbush seedlings. We report that saltbush species have closed-type RAMs, which release border-like cells (BLCs). Monosaccharide content, including glucose and fructose, in the root mucilage of saltbush was found to be uniquely low, suggesting that saltbush may minimise carbon release in polysaccharides of root exudates. Root mucilage also contained notable levels of salt, plus increasing levels of unidentified compounds at peak salinity. Un-esterified homogalacturonan, xyloglucan, and arabinogalactan proteins between and on the surface of BLCs may aid intercellular adhesion. At the highest salinity levels, root cap morphology was altered but root:shoot ratio remained consistent. While questions remain about the identity of some components in saltbush root mucilage other than the key monosaccharides, this new information about root cap morphology and cell surface polysaccharides provides avenues for future research. Australian saltbush (Atriplex spp.), used for pasture in semi-arid areas, survive in exceptionally salty environments, but little is known about how salinity affects the root morphology and root exudates. We discovered that saltbush have closed-type root apical meristems and release limited sugars as root exudates, maintaining root:shoot ratio even at extreme salinity. These findings offer new insights into saltbush resilience and encourage further research into their unique root properties. [ABSTRACT FROM AUTHOR]

Legume/cereal intercropping is an example of classic nitrogen-efficient planting that can effectively improve crop yield and nutrient-utilization efficiency. However, the interaction between rhizosphere microorganisms and rhizodeposition and the related ecological mechanisms remain unclear. We conducted a pot experiment using 13CO2 continuous labeling, DNA stable isotope probe technology, high-throughput sequencing, and the carbon-nitrogen-phosphorus functional gene chip to effectively track rhizosphere-deposited C and compare the microorganisms that utilize this C pool in the rhizosphere of a soybean/maize intercropping system at 21 days after labeling. The relative abundance of Caldalkalibacillus and Nesterenkonia that use rhizosphere-deposited C was significantly higher in the soybean/maize intercropping system than in monocropped soybean, but there were no significant differences between intercropped and monocropped maize. The soybean/maize intercropping system altered the composition of the microbial community that utilizes rhizosphere-deposited C and reduced the community richness. Moreover, intercropping improved the expression of functional genes associated with carbon fixation (acsH and exg) and nitrous oxide reduction (nosZ1). Overall, by tracking the flow of C from plant photosynthetic products to root exudates, our research provides new insights into identifying the microbial communities that assimilate and deposit carbon in soil. [ABSTRACT FROM AUTHOR]

It is unknown whether soil microbiota and soil bacteria isolated from the rhizosphere of selenium hyperaccumulator plants can affect selenium absorption by selenium non-hyperaccumulator plants. Here, we used pot experiments and split root experiments to investigate the role of soil microbiota and isolated rhizosphere bacteria from a selenium hyperaccumulator plant (Cardamine violifolia) in affecting selenium absorption by a selenium non-hyperaccumulator plant (Brassica napus), combining root metabolism analysis, microbiome profiling, strain isolation and its selenium absorption functional validation. We found that soil microbiota of Cardamine violifolia significantly increased the root selenium content by 31.8% and regulated root exudation by Brassica napus. Additionally, the application of upregulated long-chain organic acids + amino acids, long-chain organic acids + short-chain organic acids, ethanolamine, and 2-ketobutyric acid increased the selenium contents in the roots of Brassica napus by 69.6%, 38.4%, 81.2%, and 48.8%, respectively. Further investigation revealed that dominant bacteria were significantly enriched in the rhizosphere of C. violifolia compared to B. napus. After that, we isolated the rhizosphere bacteria of Cardamine violifolia and observed that Bacillus sp.-2, Chryseobacterium sp., and Pseudomonas sp., as well as their combined communities, significantly improved selenium absorption in Brassica napus. Moreover, the combined bacterial communities significantly regulated specific-root metabolism, enhanced rhizosphere soil available selenium content, promoted root development, increased expression levels of genes encoding selenium transporter in root. These findings provide insights into utilizing rhizosphere bacteria of selenium hyperaccumulator plants to increase selenium absorption by non-hyperaccumulator plants. [ABSTRACT FROM AUTHOR]

Biological Nitrification Inhibition (BNI) encompasses primarily NH4+‐induced release of secondary metabolites to impede the rhizospheric nitrifying microbes from performing nitrification. The intermediate wheatgrass Thinopyrum intermedium (Kernza®) is known for exuding several nitrification inhibition traits, but its BNI potential has not yet been identified. We hypothesized Kernza® to evince BNI potential through the presence and release of multiple BNI metabolites. The presence of BNI metabolites in the biomass of Kernza® and annual winter wheat (Triticum aestivum) and in the root exudates of hydroponically grown Kernza®, were fingerprinted using HPLC‐DAD and GC–MS/MS analyses. Growth bioassays involving ammonia‐oxidizing bacteria (AOB) and archaea (AOA) strains were conducted to assess the influence of the crude root metabolome of Kernza® and selected metabolites on nitrification. In most instances, significant concentrations of various metabolites with BNI potential were observed in the leaf and root biomass of Kernza® compared to annual winter wheat. Furthermore, NH4+ nutrition triggered the exudation of various phenolic BNI metabolites. Crude root exudates of Kernza® inhibited multiple AOB strains and completely inhibited N. viennensis. Vanillic acid, caffeic acid, vanillin, and phenylalanine suppressed the growth of all AOB and AOA strains tested, and reduced soil nitrification, while syringic acid and 2,6‐dihydroxybenzoic acid were ineffective. We demonstrated the considerable role of the Kernza® metabolome in suppressing nitrification through active exudation of multiple nitrification inhibitors. [ABSTRACT FROM AUTHOR]

Compounds exuded from roots play a key role in regulating plant allelopathic interactions. However, phytochormone profiling of root exudates and their contribution to an overall allelochemical activity of specific plant species is neglected topic in allelochemical research. Hairy root growth media of two different species, the fruit tree species Malus × domestica Borkh. and the herbaceous weed species Chenopodium murale L. were collected and analyzed by high-performance liquid chromatography coupled with tandem mass spectrometry (LC–MS/MS). We found that most of the phytohormones exuded by the hairy roots of C. murale and M. domestica were associated with the acidic fraction (96.8% and 98.9%, respectively), including 2-oxindole-3-acetic acid, phenylacetic acid, salicylic acid (SA), benzoic acid (BzA), and abscisic acid, with SA and BzA being the most abundant, while those associated with the basic fraction, including cytokinins and the ethylene precursor 1-aminocyclopropane-1-carboxylic acid, accounted for only 1% of the plant growth substances detected in both species. Exogenous application of 0.2 µM SA, which was released from the hairy roots of C. murale and accumulated in the culture media for four weeks, significantly impaired hairy root growth of M. domestica and also shoot and root growth of Arabidopsis seedlings. The disruptive effect of 0.2 µM SA on the membrane potential of M. domestica hairy root and Arabidopsis root cells was determined. The data obtained could be useful for planning further studies aimed at clarifying the contribution and role of exuded phytohormones to the overall allelopathic potential of these two plant species. [ABSTRACT FROM AUTHOR]

In recycled hydroponics, successive crop cultivation by maintaining electrical conductivity (EC) suffers lower growth performance due to accumulating autotoxic root exudates. In this study, the efficiency of alternate current electro degradation (AC-ED) was evaluated for degrading allelochemicals and recovering retarded lettuce yield cultivated in EC-adjusted repeatedly used nutrient solutions. From benzoic acid (BA)-added nutrient solution, BA was completely degraded after 24 h by applying AC-ED at 551 and 940 Hz frequency with 50 and 80% electrical duty. In lettuce bioassay, fresh mass was negatively affected without the AC-ED-treated solution. Finally, lettuce seedlings were hydroponically grown in a plant factory using a half-strength Enshi nutrient solution. Culture solutions were unchanged in non-renewed solutions. Nutrient elements were supplied based on the EC (1.42 dS m−1) of culture solutions. The fresh weight of lettuce was gradually decreased in subsequent cultures. Nutrient absorption rate was reduced in non-renewed solutions though enough of all nutrient elements were available in the solution. In the final culture, the highest shoot fresh weight (SFW) was recorded in the renewed (83.0 g plant−1) solution which was similar to the AC-ED-treated solution (81.0 g plant−1) and the lowest (58.0 g plant−1) was in the non-renewed solution. By applying AC-ED, 40% lettuce yield was recovered in the EC-adjusted solution without renewing. Therefore, it is recommended that the continuous application of AC-ED with the capacity of 551 Hz and 50% duty would be applied for recovering the retarded lettuce yield cultivated with repeatedly used culture solutions in recycled hydroponics. [ABSTRACT FROM AUTHOR]

Heterologous double-root grafting represents an effective strategy to mitigate challenges associated with continuous coffee cropping and reduce soil-borne diseases. However, its specific regulatory mechanism remains unclear. Therefore, a field experiment was conducted including six different grafting combinations for C. canephora cv. Robusta (Robusta) and Coffea Liberica (Liberica): Robusta scion with a homologous double root (R/RR), Liberica scion with a homologous double root (L/LL), Robusta scion with a heterologous double root (R/RL and L/RL), and Liberica scion with a heterologous double root (L/LR and R/LR); these combinations were conducted to clarify the effects of heterologous double-root grafting combinations on the root exudates and soil microbial diversity, structure, and function of Robusta and Liberica. The results demonstrated notable differences in root exudates, rhizosphere microbial structure, and function between Robusta and Liberica. Despite Liberica having lower diversity in its rhizosphere microbial communities and relatively higher levels of potential pathogenic bacteria, it showed stronger resistance to diseases. Roots of Robusta in heterologous double-root coffee seedlings significantly enhanced the secretion of resistance compounds, increased the relative abundance of potentially beneficial bacteria, and reduced the relative abundance of potential pathogenic fungi. This enhances the rhizosphere immunity of Robusta against soil-borne diseases. The results indicated that grafting onto Liberica roots can strengthen resistance mechanisms and enhance the rhizosphere immunity of Robusta, thereby mitigating challenges associated with continuous cropping. [ABSTRACT FROM AUTHOR]

Arsenic (As) contamination of soils threatens the health of millions globally through accumulation in crops. While plants detoxify As via phytochelatin (PC) complexation and efflux of arsenite from roots, arsenite efflux mechanisms are not fully understood. Here, white lupin (Lupinus albus) was grown in semi-hydroponics, and exudation of glutathione (GSH) derivatives and PCs in response to As was measured using LC-MS/MS. Inhibiting synthesis of the PC precursor GSH with l -buthionine sulfoximine (BSO) or ABC transporters with vanadate drastically reduced (>22%) GSH derivative and PC2 exudation, but not PC3 exudation. This was accompanied by As hypersensitivity in plants treated with BSO and moderate sensitivity with vanadate treatment. Investigating As–PC complexation revealed two distinct As–PC complexes, As bound to GSH and PC2 (GS–As–PC2) and As bound to PC3 (As–PC3), in exudates of As-treated lupin plants. Vanadate inhibited As–PC exudation, while BSO inhibited both the synthesis and exudation of As–PC complexes. These results demonstrate a role for GSH derivatives and PC exudation in lupin As tolerance and reveal As–PC exudation as a new potential mechanism contributing to active As efflux in plants. Overall, this study uncovers insights into rhizosphere As detoxification with potential to help mitigate pollution and reduce As accumulation in crops. [ABSTRACT FROM AUTHOR]

Background: Cover cropping is an agricultural practice that uses secondary crops to support the growth of primary crops through various mechanisms including erosion control, weed suppression, nutrient management, and enhanced biodiversity. Cover crops may elicit some of these ecosystem services through chemical interactions with the soil microbiome via root exudation, or the release of plant metabolites from roots. Phytohormones are one metabolite type exuded by plants that activate the rhizosphere microbiome, yet managing this chemical interaction remains an untapped mechanism for optimizing plant-soil-microbiome interactions. Currently, there is limited understanding on the diversity of cover crop phytohormone root exudation patterns and our aim was to understand how phytochemical signals selectively enrich specific microbial taxa and functionalities in agricultural soils. Results: Here, we link variability in cover crop root exudate composition to changes in soil microbiome functionality. Exudate chemical profiles from 4 cover crop species (Sorghum bicolor, Vicia villosa, Brassica napus, and Secale cereal) were used as the chemical inputs to decipher microbial responses. These distinct exudate profiles, along with a no exudate control, were amended to agricultural soil microcosms with microbial responses tracked over time using metabolomes and genome-resolved metatranscriptomes. Our findings illustrated microbial metabolic patterns were unique in response to cover crop exudate inputs over time, particularly by sorghum and cereal rye amended microcosms. In these microcosms, we identify novel microbial members (at the genera and family level) who produced IAA and GA4 over time. Additionally, we identified cover crop exudates exclusively enriched for bacterial nitrite oxidizers, while control microcosms were discriminated for nitrogen transport, mineralization, and assimilation, highlighting distinct changes in microbial nitrogen cycling in response to chemical inputs. Conclusions: We highlight that root exudate amendments alter microbial community function (i.e., N cycling) and microbial phytohormone metabolisms, particularly in response to root exudates isolated from cereal rye and sorghum plants. Additionally, we constructed a soil microbial genomic catalog of microorganisms responding to commonly used cover crops, a public resource for agriculturally relevant microbes. Many of our exudate-stimulated microorganisms are representatives from poorly characterized or novel taxa, revealing the yet to be discovered metabolic reservoir harbored in agricultural soils. Our findings emphasize the tractability of high-resolution multi-omics approaches to investigate processes relevant for agricultural soils, opening the possibility of targeting specific soil biogeochemical outcomes through biological precision agricultural practices that use cover crops and the microbiome as levers for enhanced crop production. BPG5Z_iDvqR4KrAs2TcSTi Video Abstract [ABSTRACT FROM AUTHOR]

Background: Early childhood caries (ECC) are a prevalent chronic disease in young children. However, there has been limited research on the microbiota in different tissue levels of the same tooth in children with ECC. This study aimed to investigate the dynamic changes in bacterial diversity during the progression of Severe Early Childhood Caries (S-ECC) within the same tooth, from the tooth surface to the root canal, by collecting tissue samples from different areas of the affected tooth. Methods: Twenty primary teeth with periapical periodontitis were selected from 20 children aged 3-5 years, with 100 samples collected from the different layers: uncavitated buccal enamel surface without white spot lesion (surface), the outermost layer of the dentin carious lesion (superficial), the inner layer of carious dentin (deep), necrotic pulp tissue (pulp), and root exudate (exudate). The taxonomy of each OTU representative sequence was analyzed against the 16S rRNA database. Comparisons of alpha diversity between groups were performed. The number of shared and unique genera between groups counted. Beta diversity was contrasted to evaluate differences in bacterial community composition, and the relationships between the microbiota and samples were analyzed. The heatmap analysis of the 30 most abundant genera was used, which highlighted their relative distribution and abundance. The significantly abundant taxa (phylum to genera) of bacteria among the different groups were identified. The differences of relative abundance between bacterial genera among the five groups were analyzed. Significant Spearman correlations were noted, and visualization of the co-occurrence network was conducted. Results: Bacterial 16S rRNA gene sequencing showed that most genera were present in all layers, with the number of shared genera increasing as the disease advanced. The bacterial communities and core genera in the co-occurrence network changed with progression to severe ECC. Conclusion: An increase in both the quantity and complexity of bacterial interactions was observed. This study emphasized the importance of paying attention to the relationship between microbial species rather than just checking changes in bacterial species structure when investigating the role of bacteria in disease progression. [ABSTRACT FROM AUTHOR]

Interplanting crops is the best method to grow crops synergistically for better utilization of land and agro-resources. Grape (Vitis vinifera) and potato (Solanum tuberosum L.) have highly efficient agricultural planting systems in China, however, how soil physicochemical properties and soil microbial communities and metabolites affect the output of grape-potato interplanting remained unknown. In this study, we employed three planting patterns (CK: grape monocropping; YY: grape interplanted with potato (variety 'Favorita'); LS: grape interplanted with potato (variety 'Longshu7')) at two experimental sites i.e., the Huizhou (2022) site and the Qingyuan site (2023). The grape variety for all planting patterns was 'Sunshine Rose'. Soil samples (top 0-20 cm) at both sites were collected to observe the diversity of bacterial communities and soil metabolites. Our findings revealed that, compared with monocropping, the interplanted systems resulted in higher concentrations of total nitrogen, available phosphorus, and available potassium and enhanced the activities of acid phosphatase, urease, and protease. The potato root exudates also altered the relative abundance of Bacillus, Kaistobacter, and Streptomyces in the rhizosphere. Among the soil metabolites, lipids and organic acids showed the most significant changes. Notably, 13-L-hydroperoxylinoleic acid is the key differentially abundant metabolite involved in the regulation of linoleic acid metabolism pathways. The association analyses of the metabolome, microbiome, and soil physicochemical properties revealed that the interactions of microbes and metabolites resulted in differences in the soil nutrient content, whereas the interactions of 13-L-hydroperoxylinoleic acid and Firmicutes improved the soil nutrient levels and bacterial composition in the interplanting systems. In summary, our findings demonstrated that intercropping grapes with potato 'Favorita' was better with respect to improving soil nutrients, soil enzyme activity, the diversity of soil bacteria, and soil metabolites without causing adverse impacts on grape yield. Overall, this study explained the physiological mechanisms by which soil microorganisms and metabolites promote potato growth in grape interplanting and provided new perspectives for the utilization of soil resources in vineyards. [ABSTRACT FROM AUTHOR]

This article explores the role of rice orobanchol synthase in the hydroxylation of a noncanonical strigolactone called methyl 4-oxo-carlactonoate. Strigolactones are plant hormones that regulate growth and development, and they play a role in root parasitic weeds and beneficial symbiosis with fungi. The study focuses on the biosynthesis of strigolactones in rice and provides insights into the enzymatic processes involved. The researchers used LC-MS analysis to identify and quantify strigolactones in rice samples and found that the enzyme MAX1-1400 can convert both canonical and noncanonical strigolactones. They also discovered a new metabolite produced by MAX1-1400. The study concludes that OsMAX1-1400 is involved in noncanonical strigolactone biosynthesis, but further research is needed to understand the function and significance of these compounds in rice. The study was supported by funding from King Abdullah University of Science and Technology and the Bill & Melinda Gates Foundation. [Extracted from the article]

With the increasing shortage of land resources and the aggravation of soil pollution in mining areas, the remediation of soil in abandoned mining areas has gradually attracted people's attention. The remediation of heavy metal contaminated soil in mining areas is the key to reduce the harm of heavy metals to the environment and human health. In this study, municipal sludge and phytoremediation technology were combined to investigate the migration and transformation of heavy metals at the soil-plant interface in improved mining areas through indoor pot experiments. The results showed that heavy metals in non-rhizosphere soil entered the rhizosphere environment with the growth of plants, leading to the increase of heavy metal content in rhizosphere soil. The cumulative amounts of Cu, Zn, Pb and Cd were 1299.32, 832.10, 347.89 and 71.34 mg/kg, respectively. The content of oxidized Cu and Zn decreased with increasing planting days, while the oxidized Pb and Cd showed an increasing trend. Under acidic conditions, H+ is easy to compete with heavy metal ions for exchangeable positions in the clay mineral layer, so that the reducible heavy metals are easy to be converted into exchangeable states. In this paper, the effects of various factors on the distribution of heavy metals were discussed by adjusting soil pH, adding humic acid and root exudates, so as to analyse the migration and transformation mechanism of heavy metals at the soil-plant interface, and provide a reliable theoretical basis for soil remediation in mining areas. [ABSTRACT FROM AUTHOR]

Root exudates are known signaling agents that influence legume root nodulation, but the molecular mechanisms for nonflavonoid molecules remain largely unexplored. The number of soybean root nodules during the initial growth phase shows substantial discrepancies at distinct developmental junctures. Using a combination of metabolomics analyses on root exudates and nodulation experiments, we identify a pivotal role for certain root exudates during the rapid growth phase in promoting nodulation. Phenoxyacetic acid (POA) was found to activate the expression of GmGA2ox10 and thereby facilitate rhizobial infection and the formation of infection threads. Furthermore, POA exerts regulatory control on the miR172c-NNC1 module to foster nodule primordia development and consequently increase nodule numbers. These findings collectively highlight the important role of POA in enhancing nodulation during the accelerated growth phase of soybeans. [ABSTRACT FROM AUTHOR]

Background: Trees are associated with a broad range of microorganisms colonising the diverse tissues of their host. However, the early dynamics of the microbiota assembly microbiota from the root to shoot axis and how it is linked to root exudates and metabolite contents of tissues remain unclear. Here, we characterised how fungal and bacterial communities are altering root exudates as well as root and shoot metabolomes in parallel with their establishment in poplar cuttings (Populus tremula x tremuloides clone T89) over 30 days of growth. Sterile poplar cuttings were planted in natural or gamma irradiated soils. Bulk and rhizospheric soils, root and shoot tissues were collected from day 1 to day 30 to track the dynamic changes of fungal and bacterial communities in the different habitats by DNA metabarcoding. Root exudates and root and shoot metabolites were analysed in parallel by gas chromatography-mass spectrometry. Results: Our study reveals that microbial colonisation triggered rapid and substantial alterations in both the composition and quantity of root exudates, with over 70 metabolites exclusively identified in remarkably high abundances in the absence of microorganisms. Noteworthy among these were lipid-related metabolites and defence compounds. The microbial colonisation of both roots and shoots exhibited a similar dynamic response, initially involving saprophytic microorganisms and later transitioning to endophytes and symbionts. Key constituents of the shoot microbiota were also discernible at earlier time points in the rhizosphere and roots, indicating that the soil constituted a primary source for shoot microbiota. Furthermore, the microbial colonisation of belowground and aerial compartments induced a reconfiguration of plant metabolism. Specifically, microbial colonisation predominantly instigated alterations in primary metabolism in roots, while in shoots, it primarily influenced defence metabolism. Conclusions: This study highlighted the profound impact of microbial interactions on metabolic pathways of plants, shedding light on the intricate interplay between plants and their associated microbial communities. 2SWtA3_gUD-Xt4Z7N25436 Video Abstract [ABSTRACT FROM AUTHOR]

During the growth and development of plants, a large quantity of root exudates is released into the rhizosphere, forming a microbiome capable of stimulating plant growth and productivity. The application of microbial preparations will be the cornerstone of soil improvement and obtaining high-quality plant products. The aim of this study was to determine the influence of Azotobacter vinelandii IMV B-7076, a component of the highly effective complex bacterial preparation Azogran, on the buckwheat development and exometabolite composition in the root zone. Methods. The effect of azotobacter on the growth of buckwheat plants and their exometabolite synthesis was investigated during a 14-day cultivation period in a Farreus medium under phytotron conditions. The content of photosynthetic pigments in plant leaves was determined using spectrophotometric methods. The protein content in the medium was determined by the Bradford method, carbohydrates by their interaction with phenol and sulfuric acid, and phenols by the Folin-Chokalteu reagent. Results. It was found that the cultivation of buckwheat in a medium with azotobacter significantly stimulated the growth activity of plants and the content of chlorophyll a in their leaves. Under these conditions, the content of chlorophyll b and carotenoids in buckwheat leaves increased less noticeably. During the 14-day cultivation of plants in a medium containing 107 CFU/mL of these bacteria, the protein content increased by 110.4% compared to the control, phenolic compounds by 48.8%, and carbohydrates by 266.4%. Conclusions. Azotobacter vinelandii IMV B-7076 noticeably improves the growth of buckwheat, increases the concentration of exometabolites in the medium during hydroponic cultivation. [ABSTRACT FROM AUTHOR]

In the present study we evaluate the potential of essential oil and extracts obtained from Greek oregano (Origanum vulgare ssp. hirtum (Link) Ietswaart) to inhibit the mycelial growth of economically important plant pathogens from genus Phytophthora. The metabolite profiles of the essential oil, exudate, extract and methanolic polarity-based fractions were analyzed by GC/MS. The inhibitory activity of the essential oil and extracts against P. nicotianae var. nicotianae, P. rosacearum, P. citricola, P. plurivora and P. cryptogea was evaluated in an in vitro bioassay. Carvacrol (55.48%), p-cymene (11.06%) and γ-terpinene (15.04%) were the most abundant in the essential oil composition. In the acetone exudate and non-polar fraction, the main compound was carvacrol (48.15% and 50.34% respectively). In least amount carvacrol was found in the methanolic extract (13.24%) and completely absent in the polar fraction, where carbohydrates were the most abundant. All Phytophthora isolates responded to extracts and essential oil treatments with a decline of the vegetative growth to a different extend. A complete inhibitory effect was observed with P. nicotianae var. nicotianae in the essential oil, nonpolar fraction, acetone exudate and methanol extract variants, while the mycelial growth of P. cryptogea and P. plurivora was inhibited to a moderate degree. P. rosacearum was the most tolerant among tested oomycete representatives in these variants. We conclude that the economically important Phytophthora species, investigated in this study are susceptible to the impact of essential oil, methanol extract, the methanol's non-polar fraction, and acetone exudates of the aromatic plant O. vulgare subsp. hirtum. Essential oil, methanol extract, acetone exudate and non-polar fraction of Greek oregano are rich of carvacrol and could find further application in different sustainable crop protection systems. [ABSTRACT FROM AUTHOR]

Gas exchange in the soil is determined by the size and connectivity of air‐filled pores. Root mucilage reduces air‐filled pore connectivity and thus gas diffusivity. It is unclear to what extent mucilage affects soil pore connectivity and tortuosity. The aim of this study was to gain a better understanding of gas diffusion processes in the rhizosphere by explaining the geometric alterations of the soil pore space induced by mucilage. We quantified the effect of a root mucilage analogue collected from chia seeds without intrinsic respiratory activity on oxygen diffusion at different water contents during drying–rewetting cycles in a diffusion chamber experiment. Quantification of oxygen diffusion showed that mucilage decreased the gas diffusion coefficient in dry soil without affecting air‐filled porosity. Without mucilage, a hysteresis in gas diffusion coefficient during a drying–rewetting cycle was observed. The effect depended on particle size and diminished with increasing mucilage content. X‐ray computed tomography imaging indicated a hysteresis in the connectivity of the gas phase during a drying–rewetting cycle for samples without mucilage. This effect was attenuated with increasing mucilage content. Furthermore, electron microscopy showed that mucilage structures formed in drying soil increase with mucilage content, thereby progressively reducing the connectivity of the gas phase. In conclusion, the effect of mucilage on soil gas diffusion highly depends on soil texture and mucilage content. The diminishing hysteresis with the addition of mucilage suggests that plant roots secrete mucilage to balance oxygen availability and water content, even under fluctuating moisture conditions. [ABSTRACT FROM AUTHOR]

The secretion of root exudates plays a crucial regulatory role in the process of soil carbon cycling. It is also significantly affected by global change factors (GCFs), yet the general patterns of these changes have not been fully explored, which greatly limits the accurate establishment of carbon cycling models under the background of global change.To address this, we conducted a meta‐analysis that included 1926 data pairs to examine the effects of global variability on root exudates. Furthermore, we performed multi‐model inference using Akaike's information criterion (AIC) to assess the relative importance of multiple factors such as annual average temperature (AAT), type of ecosystem, intensity of treatment, duration and more.The findings revealed that GCFs generally improved the production of root exudates. While the addition of nitrogen and its interaction with increased temperature significantly reduced the rate of root carbon secretion, all other factors significantly promoted it. Interestingly, as the intensity of warming increased, the rate of root carbon secretion caused by warming displayed a downward trend, with a threshold of 3.6°C. Furthermore, the influence of GCFs on root carbon secretion was found to be regulated by soil nitrogen, confirming the importance of nutrients from the rhizosphere in this process.These results underscore the importance of GCFs in root exudates and emphasize the crucial role of soil total nitrogen in the regulation of root carbon secretion. They also provide valuable scientific parameters for the development of more accurate models for the global‐change carbon cycle. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

The escalating risks of drought and salinization due to climate change and anthropogenic activities are a major global concern. Rhizobium–legume (herb or tree) symbiosis is proposed as an ideal solution for improving soil fertility and rehabilitating arid lands, representing a crucial direction for future research. Consequently, several studies have focused on enhancing legume tolerance to drought and salinity stresses using various techniques, including molecular-based approaches. These methods, however, are costly, time-consuming, and cause some environmental issues. The multiplicity of beneficial effects of soil microorganisms, particularly plant growth-promoting bacteria (PGPB) or plant-associated microbiomes, can play a crucial role in enhancing legume performance and productivity under harsh environmental conditions in arid zones. PGPB can act directly or indirectly through advanced mechanisms to increase plant water uptake, reduce ion toxicity, and induce plant resilience to osmotic and oxidative stress. For example, rhizobia in symbiosis with legumes can enhance legume growth not only by fixing nitrogen but also by solubilizing phosphates and producing phytohormones, among other mechanisms. This underscores the need to further strengthen research and its application in modern agriculture. In this review, we provide a comprehensive description of the challenges faced by nitrogen-fixing leguminous plants in arid and semi-arid environments, particularly drought and salinity. We highlight the potential benefits of legume–rhizobium symbiosis combined with other PGPB to establish more sustainable agricultural practices in these regions using legume–rhizobium–PGPB partnerships. [ABSTRACT FROM AUTHOR]

This review illuminates established knowledge of root–arbuscular mycorrhizal fungi (AMF)–plant mutualism to study the uptake of phosphorus (P) as a critical element for plant nutrition. We focus on P cycling, underscoring the role of AMF in enhancing P acquisition and plant resilience in the rhizosphere. The role(s) of plant roots, root exudates, and biomolecules in relevant soil processes is emphasized in this manuscript. Enhancing P uptake efficiency through AMF interaction presents a promising avenue for sustainable agriculture, with future research opportunities focusing on understanding underlying mechanisms and developing innovative technologies as a need to transition from the use of AMF as a biofertilizer or as an inoculation alternative for seeds to being an inspiration for the development of technology adapted to different crops. This is important to promote responsible agricultural practices and improve crop yields. We provide definitions of key terms and concepts for one of the best-known natural sustainable phosphorus systems. This manuscript illuminates and aims to inspire technology development to overcome the challenge of plant nutrition under P scarcity conditions. [ABSTRACT FROM AUTHOR]

Canola (Brassica napus L.) is a profitable grain crop for Australian growers. However, weeds remain a major constraint for its production. Chemical herbicides are used for weed control, but this tactic also leads to the evolution of herbicide resistance in different weed species. The suppression of weeds by crop interference (competition and allelopathic) mechanisms has been receiving significant attention. Here, the weed suppressive ability and associated functional traits and stability of four selected canola genotypes (PAK85388-502, AV-OPAL, AV-GARNET, and BAROSSA) were examined at different locations in NSW, Australia. The results showed that there were significant effects of canola genotypes and of genotypes by crop density interaction on weed growth. Among the tested genotypes, PAK85388-502 and AV-OPAL were the most weed suppressive and, at a plant density of 10 plants/m2, they reduced the weed biomass of wild radish, shepherd's purse, and annual ryegrass by more than 80%. No significant differences were found in the primary root lengths among canola varieties; however, plants of the most weed-suppressive genotype PAK8538-502 exhibited a 35% increase in lateral root number relative to plants of the less weed-suppressive genotype BAROSSA. The analysis of variance revealed a significant influence of genotypes with PAK85388-502 and AV-OPAL performing the best across all the research sites. Results showed that canola genotypes PAK85388-502 and AV-OPAL were more weed suppressive than AV-GARNET and BAROSSA and may release specific bioactive compounds in their surroundings to suppress neighboring weeds. This study provides valuable information that could be utilised in breeding programs to select weed-suppressive varieties of canola in Australia. Thus, lateral root number could be a potential target trait for weed-suppressive varieties. Additionally, other root architecture traits may contribute to the underground allelopathic interaction to provide a competitive advantage to the crop. [ABSTRACT FROM AUTHOR]

Fine root morphological traits regulate the belowground resource acquisition strategies of trees. Therefore, investigating genotypic variations isolated from environmental variations within tree species helps in understanding how genotypic backgrounds affect intragenerational tree acclimation to the growing environment. Thus, this study aimed to clarify the effects of genotypic variations on the fine root morphology of three types of Japanese cedar (Cryptomeria japonica), which were derived from different provenances but were grown in a common garden. In the three geographically different provenances of C. japonica stands (Yanase, Yoshino, and Yaku), fine root morphological traits, such as root length and diameter and specific root length (SRL), were measured for each root up to the 4th branching order. Yaku cedar exhibited root traits distinct from the other provenances, such as growing longer and thinner roots in 1st root order to enhance root surface area. In addition, the SRL patterns with root orders and higher root tissue density suggested a resource conservation strategy. Yanase cedar demonstrated a significantly higher root branching ratio and specific root tips than the other provenances, indicating a strategy for investing resources in absorptive roots. Although Yoshino cedar had traits similar to those of Yanase cedar or intermediate between Yanase and Yaku cedars, high aboveground production may be achieved through nutrient acquisition with root exudates instead of absorptive root growth. Genotypic variations appeared in fine root morphological traits of C. japonica trees, even when grown in the same environments, implying distinct resource acquisition strategies characterized by each provenance. [ABSTRACT FROM AUTHOR]

Plants resist the invasion of plant-parasitic nematodes (PPNs) by releasing root chemical substances, activating immune responses, and utilizing plant resistance (R) genes. A balance of interaction is formed between plants and PPNs, including multilayer communications and signal exchanges. The signal network involved in plant–nematode competition includes attraction and repellency of root exudates, perception of nematode-associated signals, activation of plant signals, interference of PPNs with plant defense, and interplay of plant systemic signals. Plant-parasitic nematodes (PPNs) are widely distributed and highly adaptable. To evade the invasion and infection of PPNs, plants initiate a series of defense responses. In turn, PPNs secrete effectors into the host tissues to suppress plant defense. In this ongoing battle between PPNs and plants, complex signal transduction processes are typically involved. This article aims to review the plant signaling network involved in host perception by the nematode, nematode perception, and downstream activation of plant defense signaling and how nematodes attempt to interfere with this network. Our goal is to establish a foundation for elucidating the signaling and regulatory mechanisms of plant–nematode interactions, and to provide insights and tools for developing PPN-resistant crops and technologies. [ABSTRACT FROM AUTHOR]

Low-molecular-weight organic acids (LMWOAs) are essential O-containing metal-binding ligands involved in maintaining metal homeostasis, various metabolic processes, and plant responses to biotic and abiotic stress. Malate, citrate, and oxalate play a crucial role in metal detoxification and transport throughout the plant. This review provides a comparative analysis of the accumulation of LMWOAs in excluders, which store metals mainly in roots, and hyperaccumulators, which accumulate metals mainly in shoots. Modern concepts of the mechanisms of LMWOA secretion by the roots of excluders and hyperaccumulators are summarized, and the formation of various metal complexes with LMWOAs in the vacuole and conducting tissues, playing an important role in the mechanisms of metal detoxification and transport, is discussed. Molecular mechanisms of transport of LMWOAs and their complexes with metals across cell membranes are reviewed. It is discussed whether different endogenous levels of LMWOAs in plants determine their metal tolerance. While playing an important role in maintaining metal homeostasis, LMWOAs apparently make a minor contribution to the mechanisms of metal hyperaccumulation, which is associated mainly with root exudates increasing metal bioavailability and enhanced xylem loading of LMWOAs. The studies of metal-binding compounds may also contribute to the development of approaches used in biofortification, phytoremediation, and phytomining. [ABSTRACT FROM AUTHOR]