1. Mechanism of phospho-Ubls' specificity and conformational changes that regulate Parkin activity.
- Author
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Lenka, Dipti Ranjan, Chaurasiya, Shradha, Ratnakar, Loknath, and Kumar, Atul
- Subjects
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UBIQUITIN ligases , *PARKIN (Protein) , *DRUG discovery , *PARKINSON'S disease , *X-ray crystallography - Abstract
PINK1 and Parkin mutations lead to the early onset of Parkinson's disease. PINK1-mediated phosphorylation of ubiquitin (Ub), ubiquitin-like protein (NEDD8), and ubiquitin-like (Ubl) domain of Parkin activate autoinhibited Parkin E3 ligase. The mechanism of various phospho-Ubls' specificity and conformational changes leading to Parkin activation remain elusive. Herein, we show that compared to Ub, NEDD8 is a more robust binder and activator of Parkin. Structures and biophysical/biochemical data reveal specific recognition and underlying mechanisms of pUb/pNEDD8 and pUbl domain binding to the RING1 and RING0 domains, respectively. Also, pUb/pNEDD8 binding in the RING1 pocket promotes allosteric conformational changes in Parkin's catalytic domain (RING2), leading to Parkin activation. Furthermore, Parkinson's disease mutation K211N in the RING0 domain was believed to perturb Parkin activation due to loss of pUb binding. However, our data reveal allosteric conformational changes due to N211 that lock RING2 with RING0 to inhibit Parkin activity without disrupting pNEDD8/pUb binding. [Display omitted] • pNEDD8/NEDD8 shows a higher affinity and activation of Parkin compared to pUb/Ub • Mechanism of specific binding of pUb/pNEDD8/pUbl to Parkin is revealed • Mechanism of pUb/pNEDD8 mediated Parkin activation is revealed • Mechanism of pathogenic mutation K211N mediated loss of Parkin activity is identified Lenka et al. determined the Parkin-pNEDD8 complex structure that reveals the specific recognition of Parkin activators on its two similar basic patches despite the similarities of various ubiquitin-like domains/proteins. They also explain the mechanism behind the reduced Parkin activity of the disease mutant K211N, which is of interest for drug discovery. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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