304 results on '"P. Hardwicke"'
Search Results
2. Self-reported physical activity and sedentary behaviour amongst UK university students: a cross-sectional case study
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Charlie J. Roberts, Declan J. Ryan, Jackie Campbell, and Jack Hardwicke
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Physical activity ,sedentary behaviours ,university students ,public health ,higher education ,Public aspects of medicine ,RA1-1270 ,Medicine (General) ,R5-920 - Abstract
Background This cross-sectional study investigated self-reported physical activity (PA) and sedentary behaviour amongst UK university students.Methods An online survey was completed by 590 students at a higher education institution in the UK to obtain both quantitative and qualitative data on PA levels and experiences, knowledge and adherence to PA guidelines, and sitting time.Results Considerable numbers (37%) were estimated to not meet the 150-min moderate-vigorous intensity weekly PA guideline and 56% did not meet strength-based activity guidelines. Just under half (48%) reported experiencing barriers to PA at university, with females, sexual minority students, white ethnicity students, those reporting lower levels of PA, and undergraduate students being more likely to report experiencing barriers. Respondents reported financial reasons, time and stress being the most influential barriers to PA, regardless of demographics. Average reported sitting time on weekdays was 8 h.Conclusions The results indicate that a large proportion of our sample of UK university students did not meet PA guidelines, experience barriers to engaging in PA, and demonstrate sedentary behaviour that has been associated with negative health outcomes. The article discusses these findings and practical considerations are offered for personnel working within universities as well as directions for future research.
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- 2024
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3. Decision-Making in the Physical Education Curriculum: An Analysis of the Student Voice in English Secondary State-Schools
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Hardwicke, Jack, Reed, Joseph, Anderson, Eric, Batten, John, and White, Adam J.
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Debates surrounding youth participation in governance have permeated a range of fields in the last two decades. This commentary is predominately situated in education and civic participation domains, with sporting domains remaining largely under researched. Indeed, this research becomes sparser when considered in school physical education and sport. In this paper we consider the position of the student within decision-making in the physical education curriculum in English secondary state-schools. The study draws on survey data from 288 English secondary state-schools exploring physical education administrator's knowledge and practice of engaging with student's decision-making related to the PE curriculum. Findings reveal considerable numbers of the schools reported no contribution from students to the physical education curriculum (n=54), and processes that were in place were problematic. Drawing on the legal framework of The UN Convention on the Rights of the Child, we argue that the lack of student voice in the physical education curriculum presents a contemporary policy concern within the English education system that requires further investigation.
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- 2022
4. Designing optimal loop, saddle, and ellipse-based magnetic coils by spherical harmonic mapping
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Hobson, Peter James, Hardwicke, Noah Louis, Davis, Alister, Smith, Thomas, Morley, Chris, Packer, Michael, Holmes, Niall, Weil, Max Alain, Brookes, Matthew, Bowtell, Richard, and Fromhold, Mark
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Physics - Applied Physics ,Mathematical Physics ,Physics - Instrumentation and Detectors - Abstract
Adaptable, low-cost, coils designed by carefully selecting the arrangements and geometries of simple primitive units are used to generate magnetic fields for diverse applications. These extend from magnetic resonance and fundamental physics experiments to active shielding of quantum devices including magnetometers, interferometers, clocks, and computers. However, finding optimal arrangements and geometries of multiple primitive structures is time-intensive and it is challenging to account for additional constraints, e.g. optical access, during the design process. Here, we demonstrate a general method to find these optimal arrangements. We encode specific symmetries into sets of loops, saddles, and cylindrical ellipses and then solve exactly for the magnetic field harmonics generated by each set. By combining these analytic solutions using computer algebra, we can use numerical techniques to efficiently map the landscape of parameters and geometries which the coils must satisfy. Sets of solutions may be found which generate desired target fields accurately while accounting for complexity and size restrictions. We demonstrate this approach by employing simple configurations of loops, saddles, and cylindrical ellipses to design target linear field gradients and compare their performance with designs obtained using conventional methods. A case study is presented where three optimized arrangements of loops, designed to generate a uniform axial field, a linear axial field gradient, and a quadratic axial field gradient, respectively, are hand-wound around a low-cost, 3D-printed coil former. These coils are used to null the background in a typical laboratory environment, reducing the magnitude of the axial field along the central half of the former's axis from $\left(7.8\pm0.3\right)$ $\mu$T (mean $\pm$ st. dev.) to $\left(0.11\pm0.04\right)$ $\mu$T., Comment: 15 pages, 14 figures, 2 tables
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- 2023
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5. In vivo terahertz sensing of psoriasis and eczema patients
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Jacob J. Young, Arturo I. Hernandez-Serrano, Joesph Hardwicke, and Emma Pickwell-MacPherson
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Medicine ,Science - Abstract
Abstract In this study we present the first in vivo clinical study of patients with eczema and psoriasis using terahertz (THz) sensing. Eczema and psoriasis patients were measured using a handheld THz scanner, both before and after the application of moisturiser. We show that THz sensing can distinguish between dry and healthy skin in different regions of the body. Furthermore, the impact of applying moisturiser on the skin can also be observed and potentially evaluated using THz light.
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- 2024
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6. An empirical appraisal of eLife's assessment vocabulary.
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Tom E Hardwicke, Sarah R Schiavone, Beth Clarke, and Simine Vazire
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Biology (General) ,QH301-705.5 - Abstract
Research articles published by the journal eLife are accompanied by short evaluation statements that use phrases from a prescribed vocabulary to evaluate research on 2 dimensions: importance and strength of support. Intuitively, the prescribed phrases appear to be highly synonymous (e.g., important/valuable, compelling/convincing) and the vocabulary's ordinal structure may not be obvious to readers. We conducted an online repeated-measures experiment to gauge whether the phrases were interpreted as intended. We also tested an alternative vocabulary with (in our view) a less ambiguous structure. A total of 301 participants with a doctoral or graduate degree used a 0% to 100% scale to rate the importance and strength of support of hypothetical studies described using phrases from both vocabularies. For the eLife vocabulary, most participants' implied ranking did not match the intended ranking on both the importance (n = 59, 20% matched, 95% confidence interval [15% to 24%]) and strength of support dimensions (n = 45, 15% matched [11% to 20%]). By contrast, for the alternative vocabulary, most participants' implied ranking did match the intended ranking on both the importance (n = 188, 62% matched [57% to 68%]) and strength of support dimensions (n = 201, 67% matched [62% to 72%]). eLife's vocabulary tended to produce less consistent between-person interpretations, though the alternative vocabulary still elicited some overlapping interpretations away from the middle of the scale. We speculate that explicit presentation of a vocabulary's intended ordinal structure could improve interpretation. Overall, these findings suggest that more structured and less ambiguous language can improve communication of research evaluations.
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- 2024
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7. Parameter estimation of a model describing the human fingers
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Panagiotis Tsakonas, Evans Neil, Joseph Hardwicke, and Michael J. Chappell
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biomechanics ,Hilbert transforms ,image motion analysis ,kinematics ,motion estimation ,Medical technology ,R855-855.5 - Abstract
Abstract The goal of this paper is twofold: firstly, to provide a novel mathematical model that describes the kinematic chain of motion of the human fingers based on Lagrangian mechanics with four degrees of freedom and secondly, to estimate the model parameters using data from able‐bodied individuals. In the literature there are a variety of mathematical models that have been developed to describe the motion of the human finger. These models offer little to no information on the underlying mechanisms or corresponding equations of motion. Furthermore, these models do not provide information as to how they scale with different anthropometries. The data used here is generated using an experimental procedure that considers the free response motion of each finger segment with data captured via a motion capture system. The angular data collected are then filtered and fitted to a linear second‐order differential approximation of the equations of motion. The results of the study show that the free response motion of the segments is underdamped across flexion/extension and ad/abduction.
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- 2024
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8. Expanding the data Ark: an attempt to make the data from highly cited social science papers publicly available
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Coby Dulitzki, Steven Michael Crane, Tom E. Hardwicke, and John P. A. Ioannidis
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metaresearch ,reproducibility ,open science ,data transparency ,open data ,social science ,Science - Abstract
Access to scientific data can enable independent reuse and verification; however, most data are not available and become increasingly irrecoverable over time. This study aimed to retrieve and preserve important datasets from 160 of the most highly-cited social science articles published between 2008–2013 and 2015–2018. We asked authors if they would share data in a public repository—the Data Ark—or provide reasons if data could not be shared. Of the 160 articles, data for 117 (73%, 95% CI [67%–80%]) were not available and data for 7 (4%, 95% CI [0%–12%]) were available with restrictions. Data for 36 (22%, 95% CI [16%–30%]) articles were available in unrestricted form: 29 of these datasets were already available and 7 datasets were made available in the Data Ark. Most authors did not respond to our data requests and a minority shared reasons for not sharing, such as legal or ethical constraints. These findings highlight an unresolved need to preserve important scientific datasets and increase their accessibility to the scientific community.
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- 2024
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9. Magnetic Field Design in a Cylindrical High-Permeability Shield: The Combination of Simple Building Blocks and a Genetic Algorithm
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Packer, M., Hobson, P. J., Davis, A., Holmes, N., Leggett, J., Glover, P., Hardwicke, N. L., Brookes, M. J., Bowtell, R., and Fromhold, T. M.
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Physics - Applied Physics - Abstract
Magnetically-sensitive experiments and newly-developed quantum technologies with integrated high-permeability magnetic shields require increasing control of their magnetic field environment and reductions in size, weight, power and cost. However, magnetic fields generated by active components are distorted by high-permeability magnetic shielding, particularly when they are close to the shield's surface. Here, we present an efficient design methodology for creating desired static magnetic field profiles by using discrete coils electromagnetically-coupled to a cylindrical passive magnetic shield. We utilize a modified Green's function solution that accounts for the interior boundary conditions on a closed finite-length high-permeability cylindrical magnetic shield, and determine simplified expressions when a cylindrical coil approaches the interior surface of the shield. We use an analytic formulation of simple discrete building blocks to provide a complete discrete coil basis to generate any physically-attainable magnetic field inside the shield. We then use a genetic algorithm to find optimized discrete coil structures composed of this basis. We use our methodology to generate an improved linear axial gradient field, $\mathrm{d}B_z/\mathrm{d}z$, and transverse bias field, $B_x$. These optimized structures increase, by a factor of seven and three compared to the standard configurations, the volume in which the desired and achieved fields agree within $1\%$ accuracy, respectively. This coil design method can be used to optimize active--passive magnetic field shaping systems that are compact and simple to manufacture, enabling accurate magnetic field control in spatially-confined experiments at low cost., Comment: The authors M. Packer and P. J. Hobson have contributed equally to this work. 24 pages, 16 figures
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- 2021
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10. An automated multiplexed turbidometric and data collection system for measuring growth kinetics of anaerobes dependent on gaseous substrates
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Hunt, Kristopher A, Forbes, Jonathan, Taub, Fred, Elliott, Nicholas, Hardwicke, Jessica, Petersen, Robert, Stopnisek, Nejc, Beck, David AC, and Stahl, David A
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Microbiology ,Biological Sciences ,Bacteria ,Anaerobic ,Bacteriological Techniques ,Data Collection ,Environmental Monitoring ,Gases ,High-Throughput Screening Assays ,Kinetics ,Methanococcus ,Optical Devices ,Symbiosis ,Anaerobic ,Automated ,Microbial ,Multiplex ,Optical density ,Medical Microbiology - Abstract
Standard methods of monitoring the growth kinetics of anaerobic microorganisms are generally impractical when there is a protracted or indeterminate period of active growth, and when high numbers of samples or replications are required. As part of our studies of the adaptive evolution of a simple anaerobic syntrophic mutualism, requiring the characterization of many isolates and alternative syntrophic pairings, we developed a multiplexed growth monitoring system using a combination of commercially available electronics and custom designed circuitry and materials. This system automatically monitors up to 64 sealed, and as needed pressurized, culture tubes and reports the growth data in real-time through integration with a customized relational database. The utility of this system was demonstrated by resolving minor differences in growth kinetics associated with the adaptive evolution of a simple microbial community comprised of a sulfate reducing bacterium, Desulfovibrio vulgaris, grown in syntrophic association with Methanococcus maripaludis, a hydrogenotrophic methanogen.
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- 2021
11. Synergistic epistasis enhances the co-operativity of mutualistic interspecies interactions
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Turkarslan, Serdar, Stopnisek, Nejc, Thompson, Anne W, Arens, Christina E, Valenzuela, Jacob J, Wilson, James, Hunt, Kristopher A, Hardwicke, Jessica, de Lomana, Adrián López García, Lim, Sujung, Seah, Yee Mey, Fu, Ying, Wu, Liyou, Zhou, Jizhong, Hillesland, Kristina L, Stahl, David A, and Baliga, Nitin S
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Genetics ,Epistasis ,Genetic ,Methanococcus ,Mutation ,Sulfates ,Symbiosis ,Environmental Sciences ,Biological Sciences ,Technology ,Microbiology - Abstract
Early evolution of mutualism is characterized by big and predictable adaptive changes, including the specialization of interacting partners, such as through deleterious mutations in genes not required for metabolic cross-feeding. We sought to investigate whether these early mutations improve cooperativity by manifesting in synergistic epistasis between genomes of the mutually interacting species. Specifically, we have characterized evolutionary trajectories of syntrophic interactions of Desulfovibrio vulgaris (Dv) with Methanococcus maripaludis (Mm) by longitudinally monitoring mutations accumulated over 1000 generations of nine independently evolved communities with analysis of the genotypic structure of one community down to the single-cell level. We discovered extensive parallelism across communities despite considerable variance in their evolutionary trajectories and the perseverance within many evolution lines of a rare lineage of Dv that retained sulfate-respiration (SR+) capability, which is not required for metabolic cross-feeding. An in-depth investigation revealed that synergistic epistasis across pairings of Dv and Mm genotypes had enhanced cooperativity within SR- and SR+ assemblages, enabling their coexistence within the same community. Thus, our findings demonstrate that cooperativity of a mutualism can improve through synergistic epistasis between genomes of the interacting species, enabling the coexistence of mutualistic assemblages of generalists and their specialized variants.
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- 2021
12. Portable markerless hand motion capture system for determining the grasps performed in activities of daily living
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Callum J. Thornton, Michael J. Chappell, Neil D. Evans, and Joseph Hardwicke
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Fingers ,Hand ,Motion Capture ,Prosthetics ,Unsupervised Learning ,Biotechnology ,TP248.13-248.65 - Abstract
Upper-limb prostheses are either too expensive for many consumers or have a greatly simplified choice of actions. This research aims to enable an improvement to the quality of life for recipients of these devices by providing an understanding of how we use our hands in modern everyday life. To achieve this a taxonomy of grasps used in activities of daily living has been created. A portable motion capture system was developed to collect data. Thirteen participants’ hand movements were recorded (totalling 62 hours and 10 minutes of data). From these data, 38 and 22 grasps were observed from the left and right hands, respectively. The portable system effectively captured natural hand motions, which formed an updated taxonomy of grasps.
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- 2024
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13. Reliability, accuracy, and minimal detectable difference of a mixed concept marker set for finger kinematic evaluation
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Manuela Paulina Trejo Ramirez, Neil Evans, Matthew Venus, Joseph Hardwicke, and Michael Chappell
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Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
The study of finger biomechanics requires special tools for accurately recording finger joint data. A marker set to evaluate finger postures during activities of daily living is needed to understand finger biomechanics in order to improve prosthesis design and clinical interventions. The purpose of this study was to evaluate the reliability of a proposed hand marker set (the Warwick marker set) to capture finger kinematics using motion capture. The marker set consisted of the application of two and three marker clusters to the fingers of twelve participants who participated in the tests across two sessions. Calibration markers were applied using a custom palpation technique. Each participant performed a series of range of motion movements and held a set of objects. Intra and inter-session reliability was calculated as well as Standard Error of Measurement (SEM) and Minimal Detectable Difference (MDD).The findings showed varying levels of intra- and inter-session reliability, ranging from poor to excellent. The SEM and MDD values were lower for the intra-session range of motion and grasp evaluation. The reduced reliability can potentially be attributed to skin artifacts, differences in marker placement, and the inherent kinematic variability of finger motion. The proposed marker set shows potential to assess finger postures and analyse activities of daily living, primarily within the context of single session tests.
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- 2023
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14. Reducing bias, increasing transparency and calibrating confidence with preregistration
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Hardwicke, Tom E. and Wagenmakers, Eric-Jan
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- 2023
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15. Reducing bias in secondary data analysis via an Explore and Confirm Analysis Workflow (ECAW): a proposal and survey of observational researchers
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Robert T. Thibault, Marton Kovacs, Tom E. Hardwicke, Alexandra Sarafoglou, John P. A. Ioannidis, and Marcus R. Munafò
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blind data analysis ,preregistration ,ALSPAC ,meta-research ,open science ,Explore and Confirm Analysis Workflow (ECAW) ,Science - Abstract
Background. Although preregistration can reduce researcher bias and increase transparency in primary research settings, it is less applicable to secondary data analysis. An alternative method that affords additional protection from researcher bias, which cannot be gained from conventional forms of preregistration alone, is an Explore and Confirm Analysis Workflow (ECAW). In this workflow, a data management organization initially provides access to only a subset of their dataset to researchers who request it. The researchers then prepare an analysis script based on the subset of data, upload the analysis script to a registry, and then receive access to the full dataset. ECAWs aim to achieve similar goals to preregistration, but make access to the full dataset contingent on compliance. The present survey aimed to garner information from the research community where ECAWs could be applied—employing the Avon Longitudinal Study of Parents and Children (ALSPAC) as a case example. Methods. We emailed a Web-based survey to researchers who had previously applied for access to ALSPAC's transgenerational observational dataset. Results. We received 103 responses, for a 9% response rate. The results suggest that—at least among our sample of respondents—ECAWs hold the potential to serve their intended purpose and appear relatively acceptable. For example, only 10% of respondents disagreed that ALSPAC should run a study on ECAWs (versus 55% who agreed). However, as many as 26% of respondents agreed that they would be less willing to use ALSPAC data if they were required to use an ECAW (versus 45% who disagreed). Conclusion. Our data and findings provide information for organizations and individuals interested in implementing ECAWs and related interventions. Preregistration. https://osf.io/g2fw5 Deviations from the preregistration are outlined in electronic supplementary material A.
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- 2023
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16. Lip symmetry following rotation advancement cleft lip repair in 5-year-old children treated by Ralph Millard and Ron Pigott
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F. Maggiulli, C. Hinton, L. Simpson, S. Gujral, J. Hardwicke, R. Slator, R.W. Pigott, T.L. Su, and B. Richard
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Cleft lip and palate ,Millard ,Pigott ,Symnose ,facial aesthetic outcomes ,Surgery ,RD1-811 - Abstract
Objective: To compare the symmetry of the lip following Rotation-Advancement cleft lip repair by Millard and Pigott and to investigate the effect on the symmetry of cleft side and gender by using different surgical protocols. Symmetry following cleft surgery was compared to that of non-cleft children. Design: Retrospective study of photographs of children aged 5 years. Setting: Three decades of post-operative photographs of children treated by Millard and Pigott. Patients: Eighty-nine children treated by Millard, 87 by Pigott and 91 non-cleft children. Interventions: Photographs were assessed using the Symnose Computer program, a rapid semi-objective quantitative assessment of lip symmetry. Main Outcome Measure(s): Asymmetry score for each surgeon, and non-cleft children. Results: There was no significant difference in the median lip % mismatch score of Millard, 36.65% and Pigott, 38.52%. Right-sided clefts showed better symmetry than left-sided clefts for Millard (p
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- 2022
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17. Experiences of a controlled early exercise intervention following a sport-related concussion: A qualitative study of rugby union student-athletes.
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Hardwicke, Jack, Malcolm, Dominic, and Glendon, Kerry
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Early aerobic exercise is associated with improved outcomes following recovery from sport-related concussion (SRC) and is now recommended in guidance for clinicians managing athletes return-to-play. To explore student-athlete experiences of a novel early aerobic exercise intervention. Qualitative study using semi-structured interviews. Loughborough University, UK. Ten rugby union university aged student-athletes (6 men) that had been medically diagnosed with an SRC sustained playing rugby. Three themes divided into eight supporting subthemes were generated. Main findings were: 1) Experience : despite some apprehension over the novel approach, most had a positive experience, 2) Adherence : Participants suggested reasonably good overall adherence to the prescribed exercises but intrinsic and extrinsic factors for non-adherence were identified, 3) Outcomes : the intervention was perceived to help rehabilitation, improve confidence, support retention of athletic identity and, for some, influenced more cautious attitudes toward brain health. The novel early exercise intervention was reasonably well received and adhered to. Unintended benefits included supporting retainment of athletic identity and encouraging precautious health behaviours. As early exercise protocols are refined, these findings will help inform the design and delivery of future interventions, particularly in relation to intensity and diversity of exercises and supporting education. • Controlled early exercise after a Sports-Related Concussion was well received amongst a small sample of rugby union athletes. • Adherence to different aspects of the programme varied, with some constraints to full adherence identified. • The intervention facilitated recovery, confidence and positive health behaviours. • This novel approach may help to improve attitudes towards reporting suspected SRC. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Non-melanoma skin cancer: diagnosis and current recommendations on management.
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Walsh, Harriet S and Hardwicke, Joseph
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The non-melanoma skin cancers (NMSC) basal cell carcinoma (BCC) and cutaneous squamous cell carcinoma (cSCC) account for the vast majority of global skin cancer diagnoses. Although mortality rate is low, tumour burden can cause significant morbidity from local compression and invasion. Aetiological factors include external influences, namely exposure to UV radiation as well as other carcinogens and individual predisposition to susceptibility from these external factors. Management consists mainly of surgical excision or one of numerous non-surgical methods, the choice of which should be tailored to individual tumour and patient factors. Newer immunological therapies may have a role in advanced or refractory cases. Guidance for management of NMSC in the United Kingdom (UK) is provided by the British Association of Dermatologists. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Hand-sewn, coupler and Doppler-assisted venous anastomosis in free flap surgery: a systematic review and meta-analysis
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Khera, Bhavika Himat, Evans, Kate, and Hardwicke, Joseph Thomas
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- 2022
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20. Parameters influencing pedestrian injury and severity – A systematic review and meta-analysis
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V Shrinivas, C Bastien, H Davies, A Daneshkhah, and J Hardwicke
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Pedestrian ,Injury severity ,Accident ,Meta-analysis ,Systematic review ,Influential parameters ,Transportation engineering ,TA1001-1280 - Abstract
Pedestrians account for 26% of all traffic fatalities worldwide. According to in-depth collision databases, around 3500 variables can affect the outcome of a collision, making it crucial to establish the relationship between each variable and the outcome. To date, there is no method defined to assess these variables' relevance other than a statistical correlation, which can sometimes lead to reasonable conclusions, but only under specific circumstances. This article addresses this issue by first conducting a literature review to determine all relevant variables, followed by developing a variable selection criterion to select crucial variables, and then conducting a meta-analysis to quantify these relationships. Epidemiological studies published between 1990 and 2022 were examined, including 93 papers from 19 different nations that considered 904,655 pedestrian collisions. Of the 204 variables that were extracted from these studies, 152 were examined using the variable selection criterion, and 68 were found to be significant. Of these, 20 were included in the meta-analysis, which combined odds ratios to aggregate the effect of a variable across various studies, thus removing study-specific conclusions. This study makes a compelling argument that using statistical correlation by itself is insufficient to determine a variable's significance. The proposed method is an objective way to distinguish the variables for stakeholders and identify their relevance. This study offers a definitive list of the 15 characteristics that must be present in any pedestrian-to-vehicle collision databases, as well as a list of 53 variables that require additional investigation, allowing for appropriate actions for safer roads.
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- 2023
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21. Erratum to: Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer
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Hu, Zhi, Mao, Jian-Hua, Curtis, Christina, Huang, Ge, Gu, Shenda, Heiser, Laura, Lenburg, Marc E, Korkola, James E, Bayani, Nora, Samarajiwa, Shamith, Seoane, Jose A, Dane, Mark A, Esch, Amanda, Feiler, Heidi S, Wang, Nicholas J, Hardwicke, Mary Ann, Laquerre, Sylvie, Jackson, Jeff, Wood, Kenneth W, Weber, Barbara, Spellman, Paul T, Aparicio, Samuel, Wooster, Richard, Caldas, Carlos, and Gray, Joe W
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Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
In the version of this article that was published on PubMed [1] the author's name "Mark A. Dane" was formatted incorrectly in the XML mark up and therefore appeared incorrectly on PubMed. In the XML mark up, the middle initial "A" was added as a Particle when it should have been included as a Given Name. Due to this error, the author's name was incorrectly formatted in PubMed as "A Dane M" and not as "Dane MA". The author's name is correct on the BioMed Central website. The author's name in the XML of the original article [1] has been updated accordingly.
- Published
- 2017
22. Post-publication critique at top-ranked journals across scientific disciplines: a cross-sectional assessment of policies and practice
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Tom E. Hardwicke, Robert T. Thibault, Jessica E. Kosie, Loukia Tzavella, Theiss Bendixen, Sarah A. Handcock, Vivian E. Köneke, and John P. A. Ioannidis
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peer review ,post-publication critique ,letter to the editor ,meta-research ,journal policy ,scientific criticism ,Science - Abstract
Journals exert considerable control over letters, commentaries and online comments that criticize prior research (post-publication critique). We assessed policies (Study One) and practice (Study Two) related to post-publication critique at 15 top-ranked journals in each of 22 scientific disciplines (N = 330 journals). Two-hundred and seven (63%) journals accepted post-publication critique and often imposed limits on length (median 1000, interquartile range (IQR) 500–1200 words) and time-to-submit (median 12, IQR 4–26 weeks). The most restrictive limits were 175 words and two weeks; some policies imposed no limits. Of 2066 randomly sampled research articles published in 2018 by journals accepting post-publication critique, 39 (1.9%, 95% confidence interval [1.4, 2.6]) were linked to at least one post-publication critique (there were 58 post-publication critiques in total). Of the 58 post-publication critiques, 44 received an author reply, of which 41 asserted that original conclusions were unchanged. Clinical Medicine had the most active culture of post-publication critique: all journals accepted post-publication critique and published the most post-publication critique overall, but also imposed the strictest limits on length (median 400, IQR 400–550 words) and time-to-submit (median 4, IQR 4–6 weeks). Our findings suggest that top-ranked academic journals often pose serious barriers to the cultivation, documentation and dissemination of post-publication critique.
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- 2022
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23. Imposing Compulsory Rugby Union on Schoolchildren: An Analysis of English State-Funded Secondary Schools
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Adam John White, John Batten, Nathan E. Howarth, Rory Magrath, Joe Piggin, Pete Millward, Keith D. Parry, Melanie Lang, Rachael Bullingham, Alan J. Pearce, Luis Morales, Gary Turner, Connor Tyler Humphries, Jack Hardwicke, Eric Anderson, Graham Kirkwood, and Allyson Pollock
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injury ,risk ,safeguarding ,physical education (PE) ,curriculum ,risk acceptability ,Sports ,GV557-1198.995 - Abstract
ObjectiveTo establish the extent to which Rugby Union was a compulsory physical education activity in state-funded secondary schools in England and to understand the views of Subject Leaders for Physical Education with respect to injury risk.MethodA cross-sectional research study using data obtained under the Freedom of Information Act (2000) from 288 state-funded secondary schools.ResultsRugby Union was delivered in 81% (n = 234 of 288) of state-funded secondary school physical education curricula, including 83% (n = 229 of 275) of state-funded secondary school boys' and 54% (n = 151 of 282) of girls' physical education curricular. Rugby Union was compulsory in 91% (n = 208 of 229) of state-funded secondary schools that delivered it as part of the boys' physical education curriculum and 54% (n = 82 of 151) of state-funded secondary schools that delivered contact Rugby Union as part of the girls' physical education curriculum. Subject Leaders for Physical Education also perceived Rugby Union to have the highest risk of harm of the activities they delivered in their school physical education curriculum.ConclusionNotwithstanding discussions of appropriate measures (i.e., mandatory concussion training, Rugby Union specific qualifications and CPD) to reduce injury risk, it is recommended that Rugby Union should not be a compulsory activity given that it has a perceived high risk of injury and is an unnecessary risk for children in physical education.
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- 2022
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24. Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer
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Hu, Zhi, Mao, Jian-Hua, Curtis, Christina, Huang, Ge, Gu, Shenda, Heiser, Laura, Lenburg, Marc E, Korkola, James E, Bayani, Nora, Samarajiwa, Shamith, Seoane, Jose A, Dane, Mark A, Esch, Amanda, Feiler, Heidi S, Wang, Nicholas J, Hardwicke, Mary Ann, Laquerre, Sylvie, Jackson, Jeff, W. Wood, Kenneth, Weber, Barbara, Spellman, Paul T, Aparicio, Samuel, Wooster, Richard, Caldas, Carlos, and Gray, Joe W
- Subjects
Biomedical and Clinical Sciences ,Oncology and Carcinogenesis ,Women's Health ,Biotechnology ,Genetics ,Cancer ,Breast Cancer ,Aurora Kinases ,Breast Neoplasms ,Cell Cycle Proteins ,Cell Line ,Tumor ,Cell Proliferation ,Chromosomal Proteins ,Non-Histone ,Female ,Gene Amplification ,Gene Expression Profiling ,Gene Expression Regulation ,Neoplastic ,Gene Regulatory Networks ,Genome ,Human ,Humans ,Kaplan-Meier Estimate ,Mitosis ,Prognosis ,Protein Serine-Threonine Kinases ,Proto-Oncogene Proteins ,RNA Interference ,Small Molecule Libraries ,Treatment Outcome ,Polo-Like Kinase 1 ,Breast cancer ,Mitotic index ,Predictive biomarker ,Novel therapeutics ,Oncology & Carcinogenesis ,Oncology and carcinogenesis - Abstract
BackgroundHigh mitotic activity is associated with the genesis and progression of many cancers. Small molecule inhibitors of mitotic apparatus proteins are now being developed and evaluated clinically as anticancer agents. With clinical trials of several of these experimental compounds underway, it is important to understand the molecular mechanisms that determine high mitotic activity, identify tumor subtypes that carry molecular aberrations that confer high mitotic activity, and to develop molecular markers that distinguish which tumors will be most responsive to mitotic apparatus inhibitors.MethodsWe identified a coordinately regulated mitotic apparatus network by analyzing gene expression profiles for 53 malignant and non-malignant human breast cancer cell lines and two separate primary breast tumor datasets. We defined the mitotic network activity index (MNAI) as the sum of the transcriptional levels of the 54 coordinately regulated mitotic apparatus genes. The effect of those genes on cell growth was evaluated by small interfering RNA (siRNA).ResultsHigh MNAI was enriched in basal-like breast tumors and was associated with reduced survival duration and preferential sensitivity to inhibitors of the mitotic apparatus proteins, polo-like kinase, centromere associated protein E and aurora kinase designated GSK462364, GSK923295 and GSK1070916, respectively. Co-amplification of regions of chromosomes 8q24, 10p15-p12, 12p13, and 17q24-q25 was associated with the transcriptional upregulation of this network of 54 mitotic apparatus genes, and we identify transcription factors that localize to these regions and putatively regulate mitotic activity. Knockdown of the mitotic network by siRNA identified 22 genes that might be considered as additional therapeutic targets for this clinically relevant patient subgroup.ConclusionsWe define a molecular signature which may guide therapeutic approaches for tumors with high mitotic network activity.
- Published
- 2016
25. Rapid Lentiviral Vector Producer Cell Line Generation Using a Single DNA Construct
- Author
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Yu Hua Chen, Celeste Pallant, Christopher J. Sampson, Alessia Boiti, Sabine Johnson, Pijus Brazauskas, Philip Hardwicke, Michela Marongiu, Vanesa M. Marinova, Marlene Carmo, Nathan P. Sweeney, Ashkenaz Richard, Anthony Shillings, Peter Archibald, Eva Puschmann, Bernadette Mouzon, David Grose, Miriam Mendez-Tavio, Mao Xiang Chen, Stephen R.C. Warr, Tarik Senussi, Paul S. Carter, Sean Baker, Cindy Jung, Martijn H. Brugman, Steven J. Howe, and Conrad A. Vink
- Subjects
lentiviral vector ,cell line development ,producer cell line ,manufacturing ,Genetics ,QH426-470 ,Cytology ,QH573-671 - Abstract
Stable suspension producer cell lines for the production of vesicular stomatitis virus envelope glycoprotein (VSVg)-pseudotyped lentiviral vectors represent an attractive alternative to current widely used production methods based on transient transfection of adherent 293T cells with multiple plasmids. We report here a method to rapidly generate such producer cell lines from 293T cells by stable transfection of a single DNA construct encoding all lentiviral vector components. The resulting suspension cell lines yield titers as high as can be achieved with transient transfection, can be readily scaled up in single-use stirred-tank bioreactors, and are genetically and functionally stable in extended cell culture. By removing the requirement for efficient transient transfection during upstream processing of lentiviral vectors and switching to an inherently scalable suspension cell culture format, we believe that this approach will result in significantly higher batch yields than are possible with current manufacturing processes and enable better patient access to medicines based on lentiviral vectors.
- Published
- 2020
- Full Text
- View/download PDF
26. Eating Disorders and Disordered Eating in Competitive Cycling: A Scoping Review
- Author
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Charlie Jon Roberts, Howard Thomas Hurst, and Jack Hardwicke
- Subjects
eating disorders ,disordered eating ,competitive cycling ,eating behaviours ,Psychology ,BF1-990 - Abstract
This article reports on the findings from a scoping review on eating disorders and disordered eating in competitive cycling. The review was informed by a scoping review methodological framework as well as the Preferred Reporting Items for Systematic Reviews and Meta-analysis extension for scoping reviews (PRISMA-ScR) reporting guidelines. PubMed, SPORTDiscus and Web of Science were used to identify relevant literature for review. Fourteen studies met the eligibility criteria and were included in the full review. A narrative synthesis was used to summarise the main findings and themes across the included literature. Findings from the review are presented under the following themes: cycling as an ‘at-risk’ discipline; power to weight ratio; energy requirements and risk of low energy availability; the social environment of cycling; nutrition support provision; relationship between eating disorders/disordered eating and exercise addiction; and recommendations made in identified literature. Overall, the literature suggests competitive cycling is a sport with a high prevalence of disordered eating and/or eating disorders and a sport with unique risk factors that contribute to this. Crucially, more research is needed in this area. The article concludes with the gaps in the literature highlighted, implications for future research, and applications to policy and practice suggested.
- Published
- 2022
- Full Text
- View/download PDF
27. A Qualitative Exploration of Parents’ Perceptions of Risk in Youth Contact Rugby
- Author
-
Eric Anderson, Adam White, and Jack Hardwicke
- Subjects
concussion ,rugby ,cognition ,parental attitudes ,risk perception ,Psychology ,BF1-990 - Abstract
The purpose of this study was to explore the understandings and perceptions of risk related to brain trauma amongst parents of children that play contact rugby. A qualitative approach was taken, using semi-structured interviews with 7 mothers and 27 fathers of children that participate in contact rugby. A thematic analysis of data suggests that parents used two primary cognitive strategies to process the risk they consented to with their children’s participation in rugby; (1) minimalizing rugby risk to be equivalent to less injurious sports; and (2) elevating physical and social advantages above what they think other sports are capable of providing. From the findings it is suggested that parents who permit their children to play contact rugby are both aware of the high risks of injury in the sport, but simultaneously utilize two cognitive distortion techniques to rectify the dissonance caused between their choice to have their children play, and the salient number of concussions they observe. These results suggest that it will take properly informed consent, inclusive of concussion rates compared to other sports, in order to reduce cognitive distortion and effectively communicate risks associated with participation in contact rugby.
- Published
- 2022
- Full Text
- View/download PDF
28. Analytic reproducibility in articles receiving open data badges at the journal Psychological Science: an observational study
- Author
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Tom E. Hardwicke, Manuel Bohn, Kyle MacDonald, Emily Hembacher, Michèle B. Nuijten, Benjamin N. Peloquin, Benjamin E. deMayo, Bria Long, Erica J. Yoon, and Michael C. Frank
- Subjects
open data ,open badges ,reproducibility ,open science ,meta-research ,journal policy ,Science - Abstract
For any scientific report, repeating the original analyses upon the original data should yield the original outcomes. We evaluated analytic reproducibility in 25 Psychological Science articles awarded open data badges between 2014 and 2015. Initially, 16 (64%, 95% confidence interval [43,81]) articles contained at least one ‘major numerical discrepancy' (>10% difference) prompting us to request input from original authors. Ultimately, target values were reproducible without author involvement for 9 (36% [20,59]) articles; reproducible with author involvement for 6 (24% [8,47]) articles; not fully reproducible with no substantive author response for 3 (12% [0,35]) articles; and not fully reproducible despite author involvement for 7 (28% [12,51]) articles. Overall, 37 major numerical discrepancies remained out of 789 checked values (5% [3,6]), but original conclusions did not appear affected. Non-reproducibility was primarily caused by unclear reporting of analytic procedures. These results highlight that open data alone is not sufficient to ensure analytic reproducibility.
- Published
- 2021
- Full Text
- View/download PDF
29. An empirical assessment of transparency and reproducibility-related research practices in the social sciences (2014–2017)
- Author
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Tom E. Hardwicke, Joshua D. Wallach, Mallory C. Kidwell, Theiss Bendixen, Sophia Crüwell, and John P. A. Ioannidis
- Subjects
transparency ,reproducibility ,meta-research ,social sciences ,open science ,Science - Abstract
Serious concerns about research quality have catalysed a number of reform initiatives intended to improve transparency and reproducibility and thus facilitate self-correction, increase efficiency and enhance research credibility. Meta-research has evaluated the merits of some individual initiatives; however, this may not capture broader trends reflecting the cumulative contribution of these efforts. In this study, we manually examined a random sample of 250 articles in order to estimate the prevalence of a range of transparency and reproducibility-related indicators in the social sciences literature published between 2014 and 2017. Few articles indicated availability of materials (16/151, 11% [95% confidence interval, 7% to 16%]), protocols (0/156, 0% [0% to 1%]), raw data (11/156, 7% [2% to 13%]) or analysis scripts (2/156, 1% [0% to 3%]), and no studies were pre-registered (0/156, 0% [0% to 1%]). Some articles explicitly disclosed funding sources (or lack of; 74/236, 31% [25% to 37%]) and some declared no conflicts of interest (36/236, 15% [11% to 20%]). Replication studies were rare (2/156, 1% [0% to 3%]). Few studies were included in evidence synthesis via systematic review (17/151, 11% [7% to 16%]) or meta-analysis (2/151, 1% [0% to 3%]). Less than half the articles were publicly available (101/250, 40% [34% to 47%]). Minimal adoption of transparency and reproducibility-related research practices could be undermining the credibility and efficiency of social science research. The present study establishes a baseline that can be revisited in the future to assess progress.
- Published
- 2020
- Full Text
- View/download PDF
30. Controlled release of dextrin-conjugated growth factors to support growth and differentiation of neural stem cells
- Author
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Elaine L. Ferguson, Sameza Naseer, Lydia C. Powell, Joseph Hardwicke, Fraser I. Young, Bangfu Zhu, Qian Liu, Bing Song, and David W. Thomas
- Subjects
Biology (General) ,QH301-705.5 - Abstract
An essential aspect of stem cell in vitro culture and in vivo therapy is achieving sustained levels of growth factors to support stem cell survival and expansion, while maintaining their multipotency and differentiation potential. This study investigated the ability of dextrin (~74,000 g/mol; 27.8 mol% succinoylation) conjugated to epidermal growth factor (EGF) and basic fibroblast growth factor (bFGF; or FGF-2) (3.9 and 6.7% w/w protein loading, respectively) to support the expansion and differentiation of stem cells in vitro via sustained, controllable growth factor release. Supplementation of mouse neural stem cells (mNSCs) with dextrin-growth factor conjugates led to greater and prolonged proliferation compared to unbound EGF/bFGF controls, with no detectable apoptosis after 7 days of treatment. Immunocytochemical detection of neural precursor (nestin) and differentiation (Olig2, MAP2, GFAP) markers verified that controlled release of dextrin-conjugated growth factors preserves stem cell properties of mNSCs for up to 7 days. These results show the potential of dextrin-growth factor conjugates for localized delivery of bioactive therapeutic agents to support stem cell expansion and differentiation, and as an adjunct to direct neuronal repair. Keywords: Polymer therapeutics, Biodegradable polymers, Growth factors, Neural stem cells, Controlled release
- Published
- 2018
- Full Text
- View/download PDF
31. Monitoring the Effect of Transdermal Drug Delivery Patches on the Skin Using Terahertz Sensing
- Author
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Hannah Lindley-Hatcher, Jiarui Wang, Arturo I. Hernandez-Serrano, Joseph Hardwicke, Gabit Nurumbetov, David M. Haddleton, and Emma Pickwell-MacPherson
- Subjects
THz time domain spectroscopy ,transdermal drug delivery ,occlusion ,skin hydration ,Pharmacy and materia medica ,RS1-441 - Abstract
Water content of the skin is an important parameter for controlling the penetration rate of chemicals through the skin barrier; therefore, for transdermal patches designed for drug delivery to be successful, the effects of the patches on the water content of the skin must be understood. Terahertz (THz) spectroscopy is a technique which is being increasingly investigated for biomedical applications due to its high sensitivity to water content and non-ionizing nature. In this study, we used THz measurements of the skin (in vivo) to observe the effect of partially and fully occlusive skin patches on the THz response of the skin after the patches had been applied for 24 h. We were able to observe an increase in the water content of the skin following the application of the patches and to identify that the skin remained hyper-hydrated for four hours after the removal of the fully occlusive patches. Herein, we show that THz spectroscopy has potential for increasing the understanding of how transdermal patches affect the skin, how long the skin takes to recover following patch removal, and what implications these factors might have for how transdermal drug patches are designed and used.
- Published
- 2021
- Full Text
- View/download PDF
32. Solitary Plasmocytoma of frontal bone presenting as an asymptomatic forehead lump: A case report
- Author
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Jagadeesan, Jagajeevan, Oudit, Deemesh, Hardwicke, Joseph, Shariff, Zakir, McCoubrey, Gavin, Roberts, Gareth, and Howcroft, Andrew
- Published
- 2006
33. Artwork: to be studied
- Author
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Shariff, Zakir, Tehrani, Hamid, Jagadeesan, Jagajeevan, and Hardwicke, Joseph
- Published
- 2006
34. Mapping the universe of registered reports
- Author
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Hardwicke, Tom E. and Ioannidis, John P. A.
- Published
- 2018
- Full Text
- View/download PDF
35. How often do leading biomedical journals use statistical experts to evaluate statistical methods? The results of a survey.
- Author
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Tom E Hardwicke and Steven N Goodman
- Subjects
Medicine ,Science - Abstract
Scientific claims in biomedical research are typically derived from statistical analyses. However, misuse or misunderstanding of statistical procedures and results permeate the biomedical literature, affecting the validity of those claims. One approach journals have taken to address this issue is to enlist expert statistical reviewers. How many journals do this, how statistical review is incorporated, and how its value is perceived by editors is of interest. Here we report an expanded version of a survey conducted more than 20 years ago by Goodman and colleagues (1998) with the intention of characterizing contemporary statistical review policies at leading biomedical journals. We received eligible responses from 107 of 364 (28%) journals surveyed, across 57 fields, mostly from editors in chief. 34% (36/107) rarely or never use specialized statistical review, 34% (36/107) used it for 10-50% of their articles and 23% used it for all articles. These numbers have changed little since 1998 in spite of dramatically increased concern about research validity. The vast majority of editors regarded statistical review as having substantial incremental value beyond regular peer review and expressed comparatively little concern about the potential increase in reviewing time, cost, and difficulty identifying suitable statistical reviewers. Improved statistical education of researchers and different ways of employing statistical expertise are needed. Several proposals are discussed.
- Published
- 2020
- Full Text
- View/download PDF
36. From symptom to cancer diagnosis: Perspectives of patients and family members in Alberta, Canada.
- Author
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Anna Pujadas Botey, Paula J Robson, Adam M Hardwicke-Brown, Dorothy M Rodehutskors, Barbara M O'Neill, and Douglas A Stewart
- Subjects
Medicine ,Science - Abstract
BackgroundSignificant intervals from the identification of suspicious symptoms to a definitive diagnosis of cancer are common. Streamlining pathways to diagnosis may increase survival, quality of life post-treatment, and patient experience. Discussions of pathways to diagnosis from the perspective of patients and family members are crucial to advancing cancer diagnosis.AimTo examine the perspectives of a group of patients with cancer and family members in Alberta, Canada, on factors associated with timelines to diagnosis and overall experience.MethodsA qualitative approach was used. In-depth, semi-structured interviews with patients with cancer (n = 18) and patient relatives (n = 5) were conducted and subjected to a thematic analysis.FindingsParticipants struggled emotionally in the diagnostic period. Relevant to their experience were: potentially avoidable delays, concerns about health status, and misunderstood investigation process. Participants emphasized the importance of their active involvement in the care process, and had unmet supportive care needs.ConclusionPsychosocial supports available to potential cancer patients and their families are minimal, and may be important for improved experiences before diagnosis. Access to other patients' lived experiences with the diagnostic process and with cancer, and an enhanced supportive role of family doctors might help improve experiences for patients and families in the interval before receiving a diagnosis of cancer, which may have a significant impact on wellbeing.
- Published
- 2020
- Full Text
- View/download PDF
37. The Detection of Wound Infection by Ion Mobility Chemical Analysis
- Author
-
Emma Daulton, Alfian Wicaksono, Janak Bechar, James A. Covington, and Joseph Hardwicke
- Subjects
wound infection ,gas analysis ,diagnosis ,voc ,gc-ims. ,Biotechnology ,TP248.13-248.65 - Abstract
Surgical site infection represents a large burden of care in the National Health Service. Current methods for diagnosis include a subjective clinical assessment and wound swab culture that may take several days to return a result. Both techniques are potentially unreliable and result in delays in using targeted antibiotics. Volatile organic compounds (VOCs) are produced by micro-organisms such as those present in an infected wound. This study describes the use of a device to differentiate VOCs produced by an infected wound vs. colonised wound. Malodourous wound dressings were collected from patients, these were a mix of post-operative wounds and vascular leg ulcers. Wound microbiology swabs were taken and antibiotics commenced as clinically appropriate. A control group of soiled, but not malodorous wound dressings were collected from patients who had a split skin graft (SSG) donor site. The analyser used was a G.A.S. GC-IMS. The results from the samples had a sensitivity of 100% and a specificity of 88%, with a positive predictive value of 90%. An area under the curve (AUC) of 91% demonstrates an excellent ability to discriminate those with an infected wound from those without. VOC detection using GC-IMS has the potential to serve as a diagnostic tool for the differentiation of infected and non-infected wounds and facilitate the treatment of wound infections that is cost effective, non-invasive, acceptable to patients, portable, and reliable.
- Published
- 2020
- Full Text
- View/download PDF
38. A Practical Guide for Transparency in Psychological Science
- Author
-
Olivier Klein, Tom E. Hardwicke, Frederik Aust, Johannes Breuer, Henrik Danielsson, Alicia Hofelich Mohr, Hans Ijzerman, Gustav Nilsonne, Wolf Vanpaemel, and Michael C. Frank
- Subjects
transparency ,open science ,tutorial ,Psychology ,BF1-990 - Abstract
The credibility of scientific claims depends upon the transparency of the research products upon which they are based (e.g., study protocols, data, materials, and analysis scripts). As psychology navigates a period of unprecedented introspection, user-friendly tools and services that support open science have flourished. However, the plethora of decisions and choices involved can be bewildering. Here we provide a practical guide to help researchers navigate the process of preparing and sharing the products of their research (e.g., choosing a repository, preparing their research products for sharing, structuring folders, etc.). Being an open scientist means adopting a few straightforward research management practices, which lead to less error prone, reproducible research workflows. Further, this adoption can be piecemeal – each incremental step towards complete transparency adds positive value. Transparent research practices not only improve the efficiency of individual researchers, they enhance the credibility of the knowledge generated by the scientific community.
- Published
- 2018
- Full Text
- View/download PDF
39. Populating the Data Ark: An attempt to retrieve, preserve, and liberate data from the most highly-cited psychology and psychiatry articles.
- Author
-
Tom E Hardwicke and John P A Ioannidis
- Subjects
Medicine ,Science - Abstract
The vast majority of scientific articles published to-date have not been accompanied by concomitant publication of the underlying research data upon which they are based. This state of affairs precludes the routine re-use and re-analysis of research data, undermining the efficiency of the scientific enterprise, and compromising the credibility of claims that cannot be independently verified. It may be especially important to make data available for the most influential studies that have provided a foundation for subsequent research and theory development. Therefore, we launched an initiative-the Data Ark-to examine whether we could retrospectively enhance the preservation and accessibility of important scientific data. Here we report the outcome of our efforts to retrieve, preserve, and liberate data from 111 of the most highly-cited articles published in psychology and psychiatry between 2006-2011 (n = 48) and 2014-2016 (n = 63). Most data sets were not made available (76/111, 68%, 95% CI [60, 77]), some were only made available with restrictions (20/111, 18%, 95% CI [10, 27]), and few were made available in a completely unrestricted form (15/111, 14%, 95% CI [5, 22]). Where extant data sharing systems were in place, they usually (17/22, 77%, 95% CI [54, 91]) did not allow unrestricted access. Authors reported several barriers to data sharing, including issues related to data ownership and ethical concerns. The Data Ark initiative could help preserve and liberate important scientific data, surface barriers to data sharing, and advance community discussions on data stewardship.
- Published
- 2018
- Full Text
- View/download PDF
40. Data availability, reusability, and analytic reproducibility: evaluating the impact of a mandatory open data policy at the journal Cognition
- Author
-
Tom E. Hardwicke, Maya B. Mathur, Kyle MacDonald, Gustav Nilsonne, George C. Banks, Mallory C. Kidwell, Alicia Hofelich Mohr, Elizabeth Clayton, Erica J. Yoon, Michael Henry Tessler, Richie L. Lenne, Sara Altman, Bria Long, and Michael C. Frank
- Subjects
open data ,reproducibility ,open science ,meta-science ,interrupted time series ,journal policy ,Science - Abstract
Access to data is a critical feature of an efficient, progressive and ultimately self-correcting scientific ecosystem. But the extent to which in-principle benefits of data sharing are realized in practice is unclear. Crucially, it is largely unknown whether published findings can be reproduced by repeating reported analyses upon shared data (‘analytic reproducibility’). To investigate this, we conducted an observational evaluation of a mandatory open data policy introduced at the journal Cognition. Interrupted time-series analyses indicated a substantial post-policy increase in data available statements (104/417, 25% pre-policy to 136/174, 78% post-policy), although not all data appeared reusable (23/104, 22% pre-policy to 85/136, 62%, post-policy). For 35 of the articles determined to have reusable data, we attempted to reproduce 1324 target values. Ultimately, 64 values could not be reproduced within a 10% margin of error. For 22 articles all target values were reproduced, but 11 of these required author assistance. For 13 articles at least one value could not be reproduced despite author assistance. Importantly, there were no clear indications that original conclusions were seriously impacted. Mandatory open data policies can increase the frequency and quality of data sharing. However, suboptimal data curation, unclear analysis specification and reporting errors can impede analytic reproducibility, undermining the utility of data sharing and the credibility of scientific findings.
- Published
- 2018
- Full Text
- View/download PDF
41. Painless skin erythema in a patient with a chemoport:Anthracycline therapy extravasation presenting with skin necrosis
- Author
-
Camilo Pena, Jehanzeb Riaz, and Fred Hardwicke
- Subjects
Anthracycline therapy extravasation ,Painless skin erythema ,skin necrosis ,Diseases of the respiratory system ,RC705-779 - Published
- 2014
42. A Rare Case of Posterior Mediastinal Seminoma Mimicking Primary Lung Neoplasm
- Author
-
Sian Yik Lim, Grerk Sutamtewagul, Ragesh Panikkath, and Fred Hardwicke
- Subjects
primary mediastinal seminoma ,posterior mediastinum ,primary lung neoplasm ,immunohistochemical staining ,tissue biopsy ,Diseases of the respiratory system ,RC705-779 - Abstract
We report an atypical case of posterior mediastinal seminoma. Mediastinal seminomasare a rare form of tumor usually located in the anterior mediastinum. Our casepresented as a diagnostic challenge because of the difficulty of differentiating the primarymediastinal mass from a primary lung neoplasm. Our case highlights the fact thatseminomas may occur in the posterior mediastinum and the importance of consideringa broad differential diagnosis, especially in cases of poorly differentiated carcinoma ofthe mediastinum.
- Published
- 2013
43. GETTING THE CONVERSATION STARTED: A CASE STUDY.
- Author
-
Hardwicke, Jodine
- Published
- 2023
44. Badges to Acknowledge Open Practices: A Simple, Low-Cost, Effective Method for Increasing Transparency.
- Author
-
Mallory C Kidwell, Ljiljana B Lazarević, Erica Baranski, Tom E Hardwicke, Sarah Piechowski, Lina-Sophia Falkenberg, Curtis Kennett, Agnieszka Slowik, Carina Sonnleitner, Chelsey Hess-Holden, Timothy M Errington, Susann Fiedler, and Brian A Nosek
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Beginning January 2014, Psychological Science gave authors the opportunity to signal open data and materials if they qualified for badges that accompanied published articles. Before badges, less than 3% of Psychological Science articles reported open data. After badges, 23% reported open data, with an accelerating trend; 39% reported open data in the first half of 2015, an increase of more than an order of magnitude from baseline. There was no change over time in the low rates of data sharing among comparison journals. Moreover, reporting openness does not guarantee openness. When badges were earned, reportedly available data were more likely to be actually available, correct, usable, and complete than when badges were not earned. Open materials also increased to a weaker degree, and there was more variability among comparison journals. Badges are simple, effective signals to promote open practices and improve preservation of data and materials by using independent repositories.
- Published
- 2016
- Full Text
- View/download PDF
45. Rapid Lentiviral Vector Producer Cell Line Generation Using a Single DNA Construct
- Author
-
P. Hardwicke, Christopher J. Sampson, Martijn H. Brugman, Cindy Jung, Yu Hua Chen, Bernadette Mouzon, Eva Puschmann, Conrad A. Vink, Stephen R.C. Warr, Paul S. Carter, Ashkenaz Richard, Steven J. Howe, Alessia Boiti, Peter Archibald, Vanesa M. Marinova, Michela Marongiu, Sean Baker, Mao Xiang Chen, Sabine Johnson, Tarik Senussi, Miriam Mendez-Tavio, Nathan P. Sweeney, Celeste Pallant, Marlene Carmo, David Grose, Pijus Brazauskas, and Anthony Shillings
- Subjects
0301 basic medicine ,lcsh:QH426-470 ,cell line development ,Viral vector ,03 medical and health sciences ,0302 clinical medicine ,Plasmid ,producer cell line ,Genetics ,lcsh:QH573-671 ,Molecular Biology ,Access to medicines ,biology ,Chemistry ,lcsh:Cytology ,HEK 293 cells ,fungi ,lentiviral vector ,Stable transfection ,biology.organism_classification ,Cell biology ,manufacturing ,lcsh:Genetics ,030104 developmental biology ,Cell culture ,Vesicular stomatitis virus ,030220 oncology & carcinogenesis ,Molecular Medicine ,DNA construct ,Original Article - Abstract
Stable suspension producer cell lines for the production of vesicular stomatitis virus envelope glycoprotein (VSVg)-pseudotyped lentiviral vectors represent an attractive alternative to current widely used production methods based on transient transfection of adherent 293T cells with multiple plasmids. We report here a method to rapidly generate such producer cell lines from 293T cells by stable transfection of a single DNA construct encoding all lentiviral vector components. The resulting suspension cell lines yield titers as high as can be achieved with transient transfection, can be readily scaled up in single-use stirred-tank bioreactors, and are genetically and functionally stable in extended cell culture. By removing the requirement for efficient transient transfection during upstream processing of lentiviral vectors and switching to an inherently scalable suspension cell culture format, we believe that this approach will result in significantly higher batch yields than are possible with current manufacturing processes and enable better patient access to medicines based on lentiviral vectors., Graphical Abstract, Vink and colleagues describe a novel method to generate stable producer cell lines for lentiviral vector manufacturing using a bacterial artificial chromosome that encodes all vector components.
- Published
- 2020
46. Post-retrieval Tetris should not be likened to a ‘cognitive vaccine’
- Author
-
Cristea, I A, Naudet, F, Shanks, D R, and Hardwicke, T E
- Published
- 2018
- Full Text
- View/download PDF
47. Internet-Based Testing: A Vision or Reality?
- Author
-
Bicanich, Eleanor, Slivinski, Thomas, Kapes, Jerome T., and Hardwicke, Susan B.
- Abstract
Reports on a statewide pilot project which compared testing using paper-and-pencil and Internet-delivered test items. Participants were students from 14 Pennsylvania vocational-technical institutions. Describes the structured use, what teachers should know and insight from the project. Demonstrates that the Internet offers a viable cost-effective alternative to paper-and-pencil testing. (AEF)
- Published
- 1997
48. False Positive Rate from Prospective Studies of PET-CT in Cutaneous Malignant Melanoma: A Systematic Review and Meta-Analysis.
- Author
-
Smith, B., Church-Martin, J., Abed, H., Lloyd, E., and Hardwicke, J.T.
- Abstract
• First meta -analysis of false positive results in melanoma. • False positive rate of 6% was found from prospective studies. • Results in lymphatic and dermatological systems primarily. • Future research should include retrospective work and consistent reporting. Cutaneous malignant melanoma (CMM) is increasing in prevalence and possesses the highest mortality rate of any skin cancer. Positron Emission Tomography and Computed Tomography (PET-CT) may be utilised in either radiological staging or surveillance, primarily in stage III-IV disease. False positive (FP) results lead to patient distress, increased costs, and unnecessary follow-up. The FP rate in CMM literature varies widely, altering calculations of positive predictive value and has not undergone pooled meta-analytic. A systematic review and meta-analysis of FP results in prospective studies of PET-CT in CMM was performed in accordance with PRISMA guidelines. The systematic review produced 14 trials for inclusion. Patient-based reporting had the lowest pooled proportion of FP results with 5.8 % (95 % CI = 3.3 % to 8.8 %), lesion-based was highest with 9.1 % (95 % CI = 3.4 % to 17.2 %) and combined was 6.1 % (95 % CI = 4.3 % to 8.1 %). Bias was low to unclear other than for FP reporting. Heterogeneity (I2) was variable across all analyses. FP findings were mainly lymphatic, dermatological, respiratory, or skeletal. Diagnostic information was not provided. This study was the first attempt to quantify the pooled proportion of FP results from PET-CT in CMM. A small number of studies (n = 14) were available due to the predominance of retrospective methodology. Due to inconsistent reporting the true proportion of FP results is unclear. Systemic distribution was expected but limited diagnostic information was provided. Repeat meta-analysis using retrospective work should be performed. Future work should be prospective with clearly documented FP proportion, distribution, diagnosis, and follow-up. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
49. Repositioning the value of sociology for students studying sport in post-92 higher education institutions.
- Author
-
Mason, James and Hardwicke, Jack
- Subjects
COLLEGE curriculum ,EDUCATIONAL sociology ,UNIVERSITIES & colleges ,JOB descriptions ,COLLEGE sports - Abstract
The position of sociology within the UK post-92 higher education curriculum is increasingly under threat as neoliberal ideology continues to shape universities to be based on market principles. Here, the discipline is often thought to lack clear 'practical' outcomes which meet the demands of the job market and these challenges are particularly prominent within the capitalist nature of sport-based degrees. Using data generated from focus groups and interviews, this paper explores sport students' experiences of studying the sociology of sport within a UK post-92 higher education institution. The findings illustrate wide ranging benefits the students perceived to gain from studying the sub-discipline. From these empirical insights, we put forward the argument that the sociology of sport has potential to offer significant value to students on sport-based degrees which meet the demands of the current higher education system, as well as broader values beyond restrictive neo-liberal thinking. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
50. Using Molecular Models to Teach Chemistry. Part I: Modelling Molecules.
- Author
-
Hardwicke, Anthony J.
- Abstract
Examines the general philosophical nature of models in science and the relationship between models and analogies. Applies these ideas to molecular models in particular. (Author/JRH)
- Published
- 1995
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