383 results on '"P David Charles"'
Search Results
2. Prevalence and determinants of sleep problems in cancer survivors compared to a normative population: a PROFILES registry study
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David, Charles, Beijer, Sandra, Mols, Floortje, Oerlemans, Simone, Husson, Olga, Weijenberg, Matty P, and Ezendam, Nicole PM
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- 2024
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3. A new look at the architecture and dynamics of the Hydra nerve net.
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Keramidioti, Athina, Schneid, Sandra, Busse, Christina, Cramer von Laue, Christoph, Bertulat, Bianca, Salvenmoser, Willi, Hess, Martin, Alexandrova, Olga, Glauber, Kristine, Steele, Robert, Hobmayer, Bert, Holstein, Thomas, and David, Charles
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Hydra ,developmental biology ,gap junction ,innexin ,nerve bundles ,nerve net ,neuroscience ,Animals ,Hydra ,Nerve Net ,Neurons ,Neurites ,Cnidaria - Abstract
The Hydra nervous system is the paradigm of a simple nerve net. Nerve cells in Hydra, as in many cnidarian polyps, are organized in a nerve net extending throughout the body column. This nerve net is required for control of spontaneous behavior: elimination of nerve cells leads to polyps that do not move and are incapable of capturing and ingesting prey (Campbell, 1976). We have re-examined the structure of the Hydra nerve net by immunostaining fixed polyps with a novel antibody that stains all nerve cells in Hydra. Confocal imaging shows that there are two distinct nerve nets, one in the ectoderm and one in the endoderm, with the unexpected absence of nerve cells in the endoderm of the tentacles. The nerve nets in the ectoderm and endoderm do not contact each other. High-resolution TEM (transmission electron microscopy) and serial block face SEM (scanning electron microscopy) show that the nerve nets consist of bundles of parallel overlapping neurites. Results from transgenic lines show that neurite bundles include different neural circuits and hence that neurites in bundles require circuit-specific recognition. Nerve cell-specific innexins indicate that gap junctions can provide this specificity. The occurrence of bundles of neurites supports a model for continuous growth and differentiation of the nerve net by lateral addition of new nerve cells to the existing net. This model was confirmed by tracking newly differentiated nerve cells.
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- 2024
4. De-novo assembly of a reference genome for a critically threatened Aotearoa New Zealand tree species, Syzygium maire (Myrtaceae)
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Balkwill, Colan G., Deslippe, Julie R., Horton, Paul, David, Charles, Wu, Chen, Koot, Emily, Ritchie, Peter, Blissett, Wayne, and Chagné, David
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- 2024
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5. Osteogenic potential of laser modified and conditioned titanium zirconium surfaces
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P David Charles, Ponsekar Abraham Anandapandian, and Shila Samuel
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Cell culture ,neodymium-doped yttrium aluminum garnet laser modification ,osteogenesis ,titanium zirconium ,Dentistry ,RK1-715 - Abstract
Statement of Problem: The osseointegration of dental implant is related to their composition and surface treatment. Titanium zirconium (TiZr) has been introduced as an alternative to the commercially pure titanium and its alloys as dental implant material, which is attributed to its superior mechanical and biological properties. Surface treatments of TiZr have been introduced to enhance their osseointegration ability; however, reliable, easy to use surface modification technique has not been established. Purpose: The purpose of this study was to evaluate and compare the effect of neodymium-doped yttrium aluminum garnet (Nd-YAG) laser surface treatment of TiZr implant alloy on their osteogenic potential. Materials and Methods: Twenty disc-shaped samples of 5 mm diameter and 2 mm height were milled from the TiZr alloy ingot. The polished discs were ultrasonically cleaned in distilled water. Ten samples each were randomly selected as Group A control samples and Group B consisted of Nd-YAG laser surface etched and conditioned test samples. These were evaluated for cellular response. Cellular adhesion and proliferation were quantified, and the results were statistically analyzed using nonparametric analysis. Cellular morphology was observed using electron and epiflurosence microscopy. Results: Nd-YAG laser surface modified and conditioned TiZr samples increased the osteogenic potential. Conclusion: Nd-YAG laser surface modification of TiZr, improves the cellular activity, surface roughness, and wettability, thereby increasing the osteogenic potential.
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- 2016
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6. Adaptation to numerosity affects the pupillary light response
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Caponi, Camilla, Castaldi, Elisa, Burr, David Charles, and Binda, Paola
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- 2024
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7. Adaptation to numerosity affects the pupillary light response
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Camilla Caponi, Elisa Castaldi, David Charles Burr, and Paola Binda
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Medicine ,Science - Abstract
Abstract We recently showed that the gain of the pupillary light response depends on numerosity, with weaker responses to fewer items. Here we show that this effect holds when the stimuli are physically identical but are perceived as less numerous due to numerosity adaptation. Twenty-eight participants adapted to low (10 dots) or high (160 dots) numerosities and subsequently watched arrays of 10–40 dots, with variable or homogeneous dot size. Luminance was constant across all stimuli. Pupil size was measured with passive viewing, and the effects of adaptation were checked in a separate psychophysical session. We found that perceived numerosity was systematically lower, and pupillary light responses correspondingly smaller, following adaptation to high rather than low numerosities. This is consistent with numerosity being a primary visual feature, spontaneously encoded even when task irrelevant, and affecting automatic and unconscious behaviours like the pupillary light response.
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- 2024
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8. Subthalamic nucleus deep brain stimulation impacts language in early Parkinson's disease.
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Lara Phillips, Kaitlyn A Litcofsky, Michael Pelster, Matthew Gelfand, Michael T Ullman, and P David Charles
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Medicine ,Science - Abstract
Although deep brain stimulation (DBS) of the basal ganglia improves motor outcomes in Parkinson's disease (PD), its effects on cognition, including language, remain unclear. This study examined the impact of subthalamic nucleus (STN) DBS on two fundamental capacities of language, grammatical and lexical functions. These functions were tested with the production of regular and irregular past-tenses, which contrast aspects of grammatical (regulars) and lexical (irregulars) processing while controlling for multiple potentially confounding factors. Aspects of the motor system were tested by contrasting the naming of manipulated (motor) and non-manipulated (non-motor) objects. Performance was compared between healthy controls and early-stage PD patients treated with either DBS/medications or medications alone. Patients were assessed on and off treatment, with controls following a parallel testing schedule. STN-DBS improved naming of manipulated (motor) but not non-manipulated (non-motor) objects, as compared to both controls and patients with just medications, who did not differ from each other across assessment sessions. In contrast, STN-DBS led to worse performance at regulars (grammar) but not irregulars (lexicon), as compared to the other two subject groups, who again did not differ. The results suggest that STN-DBS negatively impacts language in early PD, but may be specific in depressing aspects of grammatical and not lexical processing. The finding that STN-DBS affects both motor and grammar (but not lexical) functions strengthens the view that both depend on basal ganglia circuitry, although the mechanisms for its differential impact on the two (improved motor, impaired grammar) remain to be elucidated.
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- 2012
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9. Takotsubo cardiomyopathy following traumatic hand amputation
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Bacro-Duverger, Bastien H, Thorburn, Ashley Q, Denney, Brad D, Gullett, John P, Thompson, Maxwell A, and Pigott, David Charles
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Stress cardiomyopathy ,Takotsubo cardiomyopathy ,traumatic amputation ,ultrasonography ,case report - Abstract
Takotsubo or stress cardiomyopathy is a syndrome of transient left ventricular systolic dysfunction seen in the absence of obstructive coronary artery disease. We describe a case of stress cardiomyopathy diagnosed in the emergency department (ED) using point of care ultrasound (POCUS) associated with traumatic hand amputation. The patient suffered a near-complete amputation of the right hand while using a circular saw, subsequently complicated by brief cardiac arrest with rapid return of spontaneous circulation. Point-of-care ultrasonography in the ED revealed the classic findings of takotsubo cardiomyopathy, including apical ballooning of the left ventricle and hyperkinesis of the basal walls with a severely reduced ejection fraction. After formalization of the amputation and cardiovascular evaluation, the patient was discharged from the hospital in stable condition ten days later. Emergency physicians should be aware of the possibility of stress cardiomyopathy as a cause for acute decompensation, even in isolated extremity trauma.
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- 2022
10. Mobilizing Blackness: Analyzing 21st Century Black Student Collective Agency in the University
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Turner, David Charles, III
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Black student activism in the 21st century has gained international notoriety with popular movements such as #StudentBlackOut, #FeesMustFall, and #ConcernedStudent1950 (Alfonzo & Foust, 2019; Turner, 2016). Between 2014 and 2017, Black students manipulated the momentum of a larger social movement--the Movement for Black Lives--in order to secure organizing victories for racial justice, both on and off their college campuses (Ransby, 2018; Williams, 2016). In this article, I explore the meaning-making processes of Black student activists who participated in on-campus or off-campus activism between 2014 and 2017. Themes from the interviews demonstrated that Black student activists were both politicized and entered movement organizing because of catalytic events, and that they saw themselves as resource brokers who funnel university resources, labor, and energy into dispossessed communities. In addition to arguing that participants used their racialized subjectivities to leverage resources and make changes for racial justice, I also assert that Black students were highly aware of their positionality; they raised critiques of their class-fluid positions as college students and the protections that their student identity provided them.
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- 2020
11. Measuring the Effects of the Social Rural University Campus
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Paul Benneworth, Kate Maxwell, and David Charles
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There has been demand in many countries for the establishment of small campuses in more rural locations to spread the benefits of higher education both through the provision of university courses and through the positive economic spill-overs for these communities. Evaluations of the impacts of these universities according to current models show limited effects due to their small scale and specialization. Yet whilst there are clearly spill-over benefits from rural campuses into local communities, these are not only of the traditional (knowledge and economic) variety. Rather, regional campuses create social infrastructure that supports these places' quality of life. This article seeks to develop a proposal for how such social impacts of regional campuses could be evaluated by creating a conceptual framework that articulates how university-region learning communities contribute to socio-economic development trajectories of rural regions. Our overarching hypothesis is that social rural campuses are places where local learning communities work with globally sourced knowledge to make it useful and usable in particular local contexts. Over time, these activities form the basis of regular contact networks, and the benefits they bring become woven into the provision of place-specific welfare services. As a result, the university's contributions play a more structural role, and the students are involved in creating more lasting benefits by providing the interaction underpinning these structural collaborations. Our model is exemplified through an exploration of the context of the status of rural university campuses in Norway, and a case study of the Academy of Music, an outpost of the multi-campus University of Tromsø (UiT The Arctic University of Norway).
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- 2024
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12. Quantifying the Economic and Clinical Value of Reducing Antimicrobial Resistance in Gram-negative Pathogens Causing Hospital-Acquired Infections in Australia
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Gordon, Jason P., Al Taie, Amer, Miller, Ryan L., Dennis, James W., Blaskovich, Mark A. T., Iredell, Jonathan R., Turnidge, John D., Coombs, Geoffrey W., Grolman, David Charles, and Youssef, Jacqueline
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- 2023
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13. Deeply conserved synteny and the evolution of metazoan chromosomes
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Simakov, Oleg, Bredeson, Jessen, Berkoff, Kodiak, Marletaz, Ferdinand, Mitros, Therese, Schultz, Darrin T, O'Connell, Brendan L, Dear, Paul, Martinez, Daniel E, Steele, Robert E, Green, Richard E, David, Charles N, and Rokhsar, Daniel S
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Biological Sciences ,Genetics ,Human Genome - Abstract
Animal genomes show networks of deeply conserved gene linkages whose phylogenetic scope and chromosomal context remain unclear. Here, we report chromosome-scale conservation of synteny among bilaterians, cnidarians, and sponges and use comparative analysis to reconstruct ancestral chromosomes across major animal groups. Comparisons among diverse metazoans reveal the processes of chromosome evolution that produced contemporary karyotypes from their Precambrian progenitors. On the basis of these findings, we introduce a simple algebraic representation of chromosomal change and use it to establish a unified systematic framework for metazoan chromosome evolution. We find that fusion-with-mixing, a previously unappreciated mode of chromosome change, has played a central role. We find that relicts of several metazoan chromosomal units are preserved in unicellular eukaryotes. These conserved pre-metazoan linkages include the chromosomal unit that encodes the most diverse set of metazoan homeobox genes, suggesting a candidate genomic context for the early diversification of this key gene family.
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- 2022
14. Involvement of the Bacillus SecYEG Pathway in Biosurfactant Production and Biofilm Formation
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Frédéric Yannick Okouakoua, Christian Aimé Kayath, Saturnin Nicaise Mokemiabeka, David Charles Roland Moukala, Moïse Doria Kaya-Ongoto, and Etienne Nguimbi
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Microbiology ,QR1-502 - Abstract
With Bacillus species, about 30% of extracellular proteins are translocated through the cytoplasmic membrane, coordinated by the Sec translocase. This system mainly consists of the cytoplasmic ATPase SecA and the membrane-embedded SecYEG channel. The purpose of this work was to investigate the effects of the SecYEG export system on the production of industrial biomolecules, such as biosurfactants, proteases, amylases, and cellulases. Fifty-two isolates of Bacillus species were obtained from traditional fermented foods and then characterized using molecular microbiology methods. The isolates secreted exoenzymes that included cellulases, amylases, and proteases. We present evidence that a biosurfactant-like molecule requires the SecA ATPase and the SecYEG membrane channel for its secretion. In addition, we showed that biomolecules involved in biofilm formation required the SecYEG pathway. This work presents a novel seven-target fragment multiplex PCR assay capable of identification at the species level of Bacillus through a unique SecDF chromosomal gene. The bacterial membrane protein SecDF allowed the discrimination of Bacillus subtilis, B. licheniformis, B. amyloliquefaciens, and B. sonorensis. SecA was able to interact with AprE, AmyE, and TasA. The Rose Bengal inhibitor of SecA crucially affected the interaction of AprE, AmyE, TapA, and TasA with recombinant Gst-SecA. The Rose Bengal prevented Bacillus species from secreting and producing proteases, cellulases, amylases, and biosurfactant-like molecules. It also inhibited the formation of biofilm cell communities. The data support, for the first time, that the SecYEG translocon mediates the secretion of a biosurfactant-like molecule.
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- 2024
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15. Grouping-Induced Numerosity Biases Vary with Autistic-Like Personality Traits
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Pomè, Antonella, Caponi, Camilla, and Burr, David Charles
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Individuals with autism spectrum disorder are thought to have a more local than global perceptual style. We used a novel paradigm to investigate how grouping-induced response biases in numerosity judgments depend on autistic-like personality traits in neurotypical adults. Participants judged the numerosity of clouds of dot-pairs connected by thin lines, known to cause underestimation of numerosity. The underestimation bias correlated strongly with autism-spectrum quotient (r = 0.72, Bayes factor > 100), being weaker for participants with high autistic traits. As connecting dots probably activates global grouping mechanisms, causing dot-pairs to be processed as an integrated whole rather than as individual dots, the results suggest that these grouping mechanisms may be weaker in individuals self-reporting high levels of autistic-like traits.
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- 2022
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16. Characterization of pellets manufactured from plant waste and farm waste residues blended with distillery sludge as a prospective alternative fuel source
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David, Charles, Ganduri, Jerusha, Ragunathan, Venkataraghavan, and Natarajan, Rajamohan
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- 2023
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17. A modified total equivalent warming impact analysis: Addressing direct and indirect emissions due to corrosion.
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O'Neill, Nicholas F, Ma, James Minh, Walther, David Charles, Brockway, Lance R, Ding, Chao, and Lin, Jiang
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Corrosion ,Energy efficiency ,GWP ,Greenhouse gas emissions ,System degradation ,Total equivalent warming impact ,Environmental Sciences - Abstract
A global rise in HVAC-R utilization requires a deeper understanding of the industry's effect on electricity consumptions and greenhouse gas emissions. The Total Equivalent Warming Impact (TEWI) methodology was designed to analyze emissions from direct release of refrigerant and indirect emissions through electricity consumption of HVAC-R systems to increase the understanding of system design on emissions, and to guide refrigerant replacement. However, the original TEWI calculation neglects the system degradation due to corrosion. This paper studies on the impact of corrosion and highlights how the original TEWI method underrepresents the lifetime emissions due to energy efficiency decrease and refrigerant release. Corrosion impacts direct emissions by increasing refrigerant leakage rates over time and indirect emissions through heat exchanger efficiency degradation and suboptimal refrigerant level. A modified TEWI equation is proposed to capture the dynamic corrosion impacts over the lifetime of HVAC operations. Three scenarios (low corrosivity, conservative and moderate corrosivity) are examined to analyze different corrosion environments. This analysis indicates 6%-27% increase in TEWI emissions based on a typical residential air conditioner (AC), when the impacts of corrosion are included, with the greatest emissions increase from reduced electrical efficiency. The impact of several current and future corrosion protection scenarios on TEWI are also included. Appropriate corrosion mitigation can reduce total lifecycle emissions of systems by 6% ~ 10%. The proposed modified TEWI method is expected to provide a more accurate emission estimation for AC sustainability and policy making.
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- 2020
18. Crowding results from optimal integration of visual targets with contextual information
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Guido Marco Cicchini, Giovanni D’Errico, and David Charles Burr
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Science - Abstract
Visual crowding is a phenomenon where objects presented in the visual periphery are not resolved efficiently. Here the authors show that crowding may derive from an optimizing strategy that blends information when it is similar and preserves it when it is dissimilar.
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- 2022
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19. Future developments in cyber risk assessment for the internet of things
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Radanliev, Petar, De Roure, David Charles, Nicolescu, Razvan, Huth, Michael, Montalvo, Rafael Mantilla, Cannady, Stacy, and Burnap, Peter
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Computer Science - Computers and Society - Abstract
This article is focused on the economic impact assessment of Internet of Things (IoT) and its associated cyber risks vectors and vertices - a reinterpretation of IoT verticals. We adapt to IoT both the Cyber Value at Risk model, a well-established model for measuring the maximum possible loss over a given time period, and the MicroMort model, a widely used model for predicting uncertainty through units of mortality risk. The resulting new IoT MicroMort for calculating IoT risk is tested and validated with real data from the BullGuard's IoT Scanner - over 310,000 scans - and the Garner report on IoT connected devices. Two calculations are developed, the current state of IoT cyber risk and the future forecasts of IoT cyber risk. Our work therefore advances the efforts of integrating cyber risk impact assessments and offer a better understanding of economic impact assessment for IoT cyber risk., Comment: http://doi.org/10.1016/J.COMPIND.2018.08.002
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- 2018
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20. Expansion of a single transposable element family is associated with genome-size increase and radiation in the genus Hydra
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Wong, Wai Yee, Simakov, Oleg, Bridge, Diane M, Cartwright, Paulyn, Bellantuono, Anthony J, Kuhn, Anne, Holstein, Thomas W, David, Charles N, Steele, Robert E, and Martínez, Daniel E
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Biological Sciences ,Evolutionary Biology ,Genetics ,Human Genome ,Animals ,DNA Transposable Elements ,Evolution ,Molecular ,Genome Size ,Hydra ,Phylogeny - Abstract
Transposable elements are one of the major contributors to genome-size differences in metazoans. Despite this, relatively little is known about the evolutionary patterns of element expansions and the element families involved. Here we report a broad genomic sampling within the genus Hydra, a freshwater cnidarian at the focal point of diverse research in regeneration, symbiosis, biogeography, and aging. We find that the genome of Hydra is the result of an expansion event involving long interspersed nuclear elements and in particular a single family of the chicken repeat 1 (CR1) class. This expansion is unique to a subgroup of the genus Hydra, the brown hydras, and is absent in the green hydra, which has a repeat landscape similar to that of other cnidarians. These features of the genome make Hydra attractive for studies of transposon-driven genome expansions and speciation.
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- 2019
21. Crowding results from optimal integration of visual targets with contextual information
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Cicchini, Guido Marco, D’Errico, Giovanni, and Burr, David Charles
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- 2022
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22. Defining and Developing the Feedback-Providing and Mentoring Competencies of Clinical Preceptors
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David Charles Beck
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Physician Assistant (PA) education is based on a model of didactic instruction followed by clinical experiences under the supervision of practicing health care providers, termed "clinical preceptors." These supervised clinical practice experiences provide real-world opportunities for students to practice the skills of patient care and are a key part of preparing students for their own clinical practice upon graduation. In addition to their supervisory roles, clinical preceptors are charged with the specific tasks of providing feedback and mentoring to students. Review of administrative data at the University of Pittsburgh PA Studies Program revealed suboptimal student evaluation scores regarding the performance of these competencies by their preceptors, and the program did not have mechanisms for selecting clinical preceptors based on their competencies in providing feedback and mentoring or for developing these competencies in current preceptors. This project followed an improvement science approach, in which online learning modules regarding the competencies of providing feedback and mentoring were developed and presented to 46 current clinical preceptors. Using a pre-post model, knowledge and self-competence regarding these competencies were measured among the total population and by demographics, including age, gender, location, specialty of practice, and profession. The data were analyzed using descriptive and inferential statistics, where possible, and revealed that knowledge and self-competence scores improved overall and in almost every demographic group. This study provides proof of concept for the use of online learning modules in the professional development of clinical preceptors of the University of Pittsburgh PA Studies Program, specifically in the competencies of providing feedback and mentoring. The findings will be disseminated through a manuscript to be submitted to a professional journal, and will serve as a basis for further efforts to improving the competencies of clinical preceptors at the program, across PA education, and in the education of other health care providers. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2020
23. Sacred Reptiles and Native Worldview: Enactive Aesthetics in Ancient Mesoamerica
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Wright-Carr, David Charles
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- 2018
24. From Ancient Rome to Colonial Mexico : Religious Globalization in the Context of Empire
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Wright-Carr, David Charles, Simón, Francisco Marco, Wright-Carr, David Charles, and Simón, Francisco Marco
- Published
- 2023
25. Location- and object-based attention enhance number estimation
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Pomè, Antonella, Thompson, Diego, Burr, David Charles, and Halberda, Justin
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- 2021
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26. Mutant Kras co-opts a proto-oncogenic enhancer network in inflammation-induced metaplastic progenitor cells to initiate pancreatic cancer
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Li, Yong, He, Yi, Peng, Junya, Su, Zhendong, Li, Zeyao, Zhang, Bingjie, Ma, Jing, Zhuo, Meilian, Zou, Di, Liu, Xinde, Liu, Xinhong, Wang, Wenze, Huang, Dan, Xu, Mengyue, Wang, Jianbin, Deng, Haiteng, Xue, Jing, Xie, Wei, Lan, Xun, Chen, Mo, Zhao, Yupei, Wu, Wenming, and David, Charles J.
- Published
- 2021
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27. JEDi: java essential dynamics inspector — a molecular trajectory analysis toolkit
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David, Charles C., Avery, Chris S., and Jacobs, Donald J.
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- 2021
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28. Timed daily exercise remodels circadian rhythms in mice
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Hughes, Alun Thomas Lloyd, Samuels, Rayna Eve, Baño-Otálora, Beatriz, Belle, Mino David Charles, Wegner, Sven, Guilding, Clare, Northeast, Rebecca Catrin, Loudon, Andrew Stewart Irvine, Gigg, John, and Piggins, Hugh David
- Published
- 2021
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29. Population assessment and habitat associations of the Visayan Hornbill (Penelopides panini) in Northwest Panay, Philippines
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Mynott, Holly Isabelle, Lee, David Charles, Santillan, Rhea Aranas, Schwarz, Christian Jürgen, Tacud, Benjamin, Fernandez, Arcel Dryden, and Kerhoas, Daphne
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- 2021
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30. TGF-β orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1
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Su, Jie, Morgani, Sophie M., David, Charles J., Wang, Qiong, Er, Ekrem Emrah, Huang, Yun-Han, Basnet, Harihar, Zou, Yilong, Shu, Weiping, Soni, Rajesh K., Hendrickson, Ronald C., Hadjantonakis, Anna-Katerina, and Massagué, Joan
- Published
- 2020
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31. A pilot study evaluating the utility of commercially available antibodies for flow cytometric analysis of Panthera species lymphocytes
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Tashnica Taime Sylvester, Sven David Charles Parsons, Paul David van Helden, Michele Ann Miller, and Andre Gareth Loxton
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African lion ,Flow cytometery ,Immunophenotype ,Panthera leo ,Veterinary medicine ,SF600-1100 - Abstract
Abstract Background The immune response against tuberculosis in lions is still poorly defined and our understanding is hampered by the lack of lion specific reagents. The process for producing antibodies against a specific antigen is laborious and not available to many research laboratories. As the search for antibody cross-reactivity is an important strategy for immunological studies in veterinary medicine, we have investigated the use of commercially available antibodies to characterize T cell subsets in African lions (Panthera leo). Results Commercially available antibodies were screened and investigated the influence of two different sample processing methods, as well as the effect of time delay on cell surface marker expression on lion lymphocytes. Using commercially available antibodies, we were able to identify CD4+, CD5+, CD8+, CD14+, CD25+, CD44+ and CD45+ T lymphocytes in samples obtained by density gradient centrifugation as well as red cell lysis of lion whole blood. Two distinct lymphocyte populations, which differed in size and phenotype, were observed in the samples processed by density gradient centrifugation. Conclusion Commercially available antibodies are able to differentiate between T lymphocyte subsets including immune effector cells in African lion whole blood, and possibly give insight into unique specie phenotypes.
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- 2018
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32. Objective pupillometry shows that perceptual styles covary with autistic-like personality traits
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Chiara Tortelli, Marco Turi, David Charles Burr, and Paola Binda
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pupillometry ,autistic-like traits ,local-global perception ,transparent motion ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
We measured the modulation of pupil size (in constant lighting) elicited by observing transparent surfaces of black and white moving dots, perceived as a cylinder rotating about its vertical axis. The direction of rotation was swapped periodically by flipping stereo-depth of the two surfaces. Pupil size modulated in synchrony with the changes in front-surface color (dilating when black). The magnitude of pupillary modulation was larger for human participants with higher Autism-Spectrum Quotient (AQ), consistent with a local perceptual style, with attention focused on the front surface. The modulation with surface color, and its correlation with AQ, was equally strong when participants passively viewed the stimulus. No other indicator, including involuntary pursuit eye movements, covaried with AQ. These results reinforce our previous report with a similar bistable stimulus (Turi, Burr, & Binda, 2018), and go on to show that bistable illusory motion is not necessary for the effect, or its dependence on AQ.
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- 2021
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33. Tackling the NHS glaucoma clinic backlog issue
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Broadway, David Charles and Tibbenham, Karen
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- 2019
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34. Higher attentional costs for numerosity estimation at high densities
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Pomè, Antonella, Anobile, Giovanni, Cicchini, Guido Marco, Scabia, Aurora, and Burr, David Charles
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- 2019
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35. La ciencia cognitiva corporeizada: Una perspectiva para el estudio de los lenguajes visuales
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David Charles Wright-Carr
- Subjects
cognición ,corporeización ,enacción ,simulación corporeizada ,lenguajes visuales ,Science ,Social Sciences - Abstract
Los fundamentos teóricos que tradicionalmente han sido aprovechados para el estudio de los lenguajes visuales están relacionados, a menudo, con perspectivas y conceptos que difícilmente resisten la confrontación con los avances recientes en las ciencias cognitivas, de manera particular con el paradigma emergente de la cognición corporeizada o encarnada. En el presente trabajo hago una presentación sintética de los conceptos esenciales de este paradigma, con sugerencias para su aplicación al estudio de los sistemas de comunicación visual. Estos conceptos incluyen la cognición, la corporeización o encarnación, la enacción, la cognición embebida o incrustada, la cognición extendida, la dimensión afectiva, la cognición socialmente situada o distribuida, y la simulación corporeizada. Luego menciono varios casos de la aplicación de este paradigma en mi trabajo como facilitador del aprendizaje e investigador. Finalmente trazo una agenda que nos permitirá comprender, de una manera más profunda, el uso de los signos visuales para la comunicación de las experiencias, tomando en cuenta que la cognición emerge de la interacción dinámica de los organismos biológicos con sus medios ambientes y que, en el caso de los seres humanos, estos ambientes incluyen una dimensión sociocultural, en la cual se tejen sistemas complejos de significados simbólicos.
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- 2018
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36. Unstructured Space-Time Finite Element Methods in Four Dimensions
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Lenz, David Charles
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Mathematics ,Applied mathematics ,Finite element methods ,partial differential equation ,pentatope ,space-time - Abstract
Large-scale simulations of time-dependent partial differential equations are, at present, largely reliant on massively parallel computers. As a result, the parallel scalability of numerical methods for partial differential equations is of crucial importance. In recent years, continuous space-time finite element methods have emerged as a promising technique for approximating these equations in a scalable, flexible way. In a space-time finite element method, the space and time variables of a time-dependent equation are treated as a single unified variable in higher-dimensional space. The higher-dimensional space-time domain is discretized into a collection of simplices and finite element methods may then be defined over this discretization. Parallelization is then achieved through domain decomposition techniques.In this dissertation, we extend the theory of space-time finite element methods to a more general class of problems. We prove new theoretical results describing the stability of space-time methods applied to parabolic partial differential equations with nontrivial convection and reaction terms. In particular, we define a streamline-upwind scheme which upwinds in the direction of the space-time convection. The stabilized method is proved to be coercive with respect to an energy norm and asymptotic error bounds are derived.This dissertation also proposes several operations for the construction and refinement of unstructured, conforming four-dimensional simplex meshes. We define a simple algorithm which takes as input any tetrahedral mesh and produces a corresponding four-dimensional, simplicial space-time mesh. Our algorithm always produces conforming triangulations and may be run concurrently for each spatial element. In addition, we describe how four-dimensional simplex elements can be bisected in order to achieve local spatiotemporal refinement.
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- 2020
37. Contextual determinants of TGFβ action in development, immunity and cancer
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David, Charles J. and Massagué, Joan
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- 2018
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38. Unnecessary antibiotic use in men who have sex with men (MSM) with anogenital symptoms attending a sexual health clinic: a retrospective analysis
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Wong, Arthur, Applegate, Tanya, Boettiger, David Charles, Varma, Rick, Guy, Rebecca, and Medland, Nicholas
- Abstract
ObjectivesTo quantify the amount of unnecessary antibiotics, in particular ceftriaxone, given to men who have sex with men (MSM) with anogenital symptoms as part of presumptive management in an urban sexual health clinic and examine factors associated with unnecessary ceftriaxone.MethodsThis is a retrospective cross-sectional analysis of electronic records from all visits involving MSM reporting symptoms of bacterial sexually transmitted infection (STI) and who received presumptive antibiotics at Sydney Sexual Health Centre. The following variables were extracted: demographic and sexual behaviour data, presenting symptoms, prior STI diagnoses, use of anoscopy, use of point-of-care microscopy, prescriptions of antibiotics and subsequent nucleic acid amplification testing (NAAT) results for chlamydia and gonorrhoea in all anatomical sites (urethra, pharynx and rectum). We defined unnecessary antibiotic as an agent prescribed to treat an STI organism that was subsequently not detected.ResultsAmong 1061 visits in this analysis, 41.8% yielded negative NAAT results for both chlamydia and gonorrhoea in all anatomical sites. There were 44.3% of visits which had positive gonorrhoea NAAT result in at least one anatomical site. There were 187 courses of ceftriaxone prescribed in patients who tested negative for gonorrhoea in all anatomical sites and therefore were unnecessary. Unnecessary ceftriaxone prescribing occurred in 50.2% of visits with anorectal symptoms, 19.6% of scrotal symptoms and 7.3% of urethral symptoms. Microscopy was associated with significantly less unnecessary ceftriaxone in urethral but not anorectal or scrotal presentations. In multivariable analysis, the following factors were associated with a higher likelihood of unnecessary ceftriaxone use: anorectal symptoms, scrotal symptoms, gonorrhoea in the preceding year, contact of a bacterial STI and living with HIV.ConclusionsThis study highlights the significant amount of unnecessary ceftriaxone used for STI symptoms in MSM. A new pathway incorporating rapid point-of-care molecular testing in symptomatic patients may improve the precision of antibiotic prescribing and reduce unnecessary use.
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- 2024
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39. Dynamacophore model for breast cancer estrogen receptor alpha as an effective lead generation screening technique
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Shanmugarajan, Dhivya, Biju, Anagha, Sibi, Dona, Sibi, Rona, Shaji, Maria, and David, Charles
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AbstractRegardless to overwhelming quantum of cancer research worldwide, there are few drugs on the market to treat disease conditions. This is owing to multiple process inferences of drug targets in integrated pathways for invasion, growth, and metastasis. Over the past years, the death rate due to breast cancer has been increasing, that set the stage for improved better treatment. Therefore, there is a persistent and vital demand for innovative development of drugs to treat breast cancer. Many studies have reported that more than 60% of breast cancers are Estrogen receptor-α (ERα)-positive tumours and a key transcription factor, Estrogen receptor-α (ERα) was believed to promote proliferation of breast cancer cells. In this study, 150 ns of molecular dynamics was performed for protein-ligand complex to retrieve the potential stable conformations. The most populated dynamics cluster of 4-Hydroxytamoxifen intact with active site amino acid was selected to generate dynamacophore model (dynamic pharmacophore). Further, internal model validation with AU-ROC values ∼0.93 indicate the best model to screen library. The refined hits are funnelled in pharmacokinetics/dynamics, CDOCKER molecular docking, MM-GBSA and density functional theory to identify the promising ERα ligand candidates.Communicated by Ramaswamy H. Sarma
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- 2023
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40. Impella for the Management of Ventricular Septal Defect Complicating Acute Myocardial Infarction: A European Multicenter Registry
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Delmas, Clement, Barbosa, Hélène, David, Charles-Henri, Bouisset, Frédéric, Piriou, Pierre-Guillaume, Roubille, François, Leick, Juergen, Pavlov, Marin, Leurent, Guillaume, Potapov, Evgenij V., Linke, Axel, Mierke, Johannes, Lanmüller, Pia, and Mangner, Norman
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Ventricular septal defect (VSD) is a rare but severe complication of myocardial infarction (MI). Temporary mechanical circulatory support (MCS) can be used as a bridge to VSD closure, heart transplantation, or ventricular assist device. We describe the use of Impella device in this context based on a multicenter European retrospective registry (17 centers responded). Twenty-eight post-MI VSD patients were included (Impella device were 2.5 for 1 patient, CP for 20, 5.0 for 5, and unknown for 2). All patients were in cardiogenic shock with multiple organ failure (SAPS II 41 [interquantile range {IQR} = 27–53], lactate 4.0 ± 3.5 mmol/L) and catecholamine support (dobutamine 55% and norepinephrine 96%). Additional temporary MCS was used in 14 patients (50%), mainly extracorporeal life support (ECLS) (n = 9, 32%). Severe bleedings were frequent (50%). In-hospital and 1 year mortalities were 75%. Ventricular septal defect management was surgical for 36% of patients, percutaneous for 21%, and conservative for 43%. Only surgically managed patients survived (70% in-hospital survival). Type and combination of temporary MCS used were not associated with mortality (Impella alone or in combination with intra-aortic balloon pump [IABP] or ECLS, p= 0.84). Impella use in patients with post-MI VSD is feasible but larger prospective registries are necessary to further elucidate potential benefits of left ventricular unloading in this setting.
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- 2023
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41. Validation of a novel score to predict which patients with atrial fibrillation and depressed left ventricular ejection fraction will respond to catheter ablation.
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Serban, Teodor, du fay du Lavallaz, Jeanne, Barker, David Charles, Sticherling, Christian, Kühne, Michael, and Badertscher, Patrick
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- 2023
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42. A pilot study evaluating the utility of commercially available antibodies for flow cytometric analysis of Panthera species lymphocytes
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Sylvester, Tashnica Taime, Parsons, Sven David Charles, van Helden, Paul David, Miller, Michele Ann, and Loxton, Andre Gareth
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- 2018
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43. Treatment of Blepharospasm and Oromandibular Dystonia with Botulinum Toxins
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Travis J.W. Hassell and David Charles
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blepharospasm ,oromandibular dystonia ,Meige syndrome ,botulinum toxin ,OnabotulinumtoxinA ,AbobotulinumtoxinA ,Medicine - Abstract
Blepharospasm and oromandibular dystonia are focal dystonias characterized by involuntary and often patterned, repetitive muscle contractions. There is a long history of medical and surgical therapies, with the current first-line therapy, botulinum neurotoxin (BoNT), becoming standard of care in 1989. This comprehensive review utilized MEDLINE and PubMed and provides an overview of the history of these focal dystonias, BoNT, and the use of toxin to treat them. We present the levels of clinical evidence for each toxin for both, focal dystonias and offer guidance for muscle and site selection as well as dosing.
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- 2020
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44. Pupillometry reveals perceptual differences that are tightly linked to autistic traits in typical adults
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Marco Turi, David Charles Burr, and Paola Binda
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Local Global Processing ,pupillometry ,bistability ,Medicine ,Science ,Biology (General) ,QH301-705.5 - Abstract
The pupil is primarily regulated by prevailing light levels but is also modulated by perceptual and attentional factors. We measured pupil-size in typical adult humans viewing a bistable-rotating cylinder, constructed so the luminance of the front surface changes with perceived direction of rotation. In some participants, pupil diameter oscillated in phase with the ambiguous perception, more dilated when the black surface was in front. Importantly, the magnitude of oscillation predicts autistic traits of participants, assessed by the Autism-Spectrum Quotient AQ. Further experiments suggest that these results are driven by differences in perceptual styles: high AQ participants focus on the front surface of the rotating cylinder, while those with low AQ distribute attention to both surfaces in a more global, holistic style. This is the first evidence that pupillometry reliably tracks inter-individual differences in perceptual styles; it does so quickly and objectively, without interfering with spontaneous perceptual strategies.
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- 2018
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45. Amputation Surgery: Not Very Trendy.
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Gwilym, Brenig Llwyd and Bosanquet, David Charles
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- 2024
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46. Publisher Correction: TGF-β orchestrates fibrogenic and developmental EMTs via the RAS effector RREB1
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Su, Jie, Morgani, Sophie M., David, Charles J., Wang, Qiong, Er, Ekrem Emrah, Huang, Yun-Han, Basnet, Harihar, Zou, Yilong, Shu, Weiping, Soni, Rajesh K., Hendrickson, Ronald C., Hadjantonakis, Anna-Katerina, and Massagué, Joan
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- 2020
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47. Semantics, Pragmatics, and the Nature of Semantic Theories
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Spewak, David Charles
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The primary concern of this dissertation is determining the distinction between semantics and pragmatics and how context sensitivity should be accommodated within a semantic theory. I approach the question over how to distinguish semantics from pragmatics from a new angle by investigating what the objects of a semantic theory are, namely expressions or utterances. In Chapter 1, I investigate the preceding question. I am approaching the question of how to draw the line between semantics and pragmatics by first considering what the objects of a semantic theory are. This is an under-appreciated point in this discussion. By beginning with this question I am approaching this from a new and important angle. For if we are interested in what literal meanings are assigned to, it is a necessary step to consider what the objects of a semantic theory are. This dissertation proceeds in answering this question over what the objects of a semantic theory are by arguing that they are expression types relativized to contexts, or expressions-in-context, by relying on arguments presented by David Kaplan. In addition it is argued that the way we approach language is expression based in that we often assign semantic content to sentences that are not a part of any obvious utterances. Moreover, it is then argued that semantics based on expressions-in-context provide a clear account of examples of the historical present without positing additional ambiguity. In Chapter 2, I approach a powerful objection to an expression based approach to semantics, that of true demonstratives, i.e. expressions the use of which require an actual demonstration. If semantics proceeds by assigning content to expressions-in-context, how can it assign different contents to "that" occurring more than once in the same sentence while maintaining that it has the same linguistic meaning? Stefano Predelli defends the view that by representing the linguistic meaning, i.e. character, of 'that' as a function from the context and an integer, representing the location of "that" in the sentence, to the demonstratum in that context, we can maintain a single meaning for all demonstrative occurrences of "that". I develop this idea further and compare it with Nathan Salmon's approach to demonstratives whereby the relevant demonstration is in the formal context rather than the demonstratum. I conclude by arguing that by taking expressions-in-context as the objects of a semantic theory, rather than utterances, we can still formally account for true demonstratives, and as a result show that the approach developed in the first chapter can handle this objection. In Chapter 3, I approach the question of how we might determine if apparent contextual influence on communication is semantically required or pragmatically influencing the communicated content. If we approach semantics as expressions rather than utterances, we must find a method for determining whether contextual features are triggered by the linguistic meaning of expressions. In the hopes of getting clearer on when context is semantically relevant I consider numerous tests that have been presented in the literature, but find them all wanting. These have been put forward by Cappelen and Lepore, Cappelen and Hawthorne, and Jason Stanley. I evaluate each in turn and conclude that although someone may be able to develop tests to provide some evidence for when an expression is context sensitive, no test is immediately forthcoming. As a result of this conclusion, the best that we can do is evaluate complete theories based on coherency and explanatory power. In Chapter 4, my final chapter, I apply the results set out in earlier chapters to a particularly problematic case study: negative existentials. Negative existentials present a pressing case because any purely semantic approach will find a problem with them. So, any solution to this problem will rest on the distinction between semantics and pragmatics. I develop a theory of negative existentials based on Gricean generalized conversational implicatures within the framework provided by the distinction made in Chapter 1, where semantics assigns contents to expressions while pragmatics to utterances as well as the results of Chapter 3, namely that if we cannot test an expression for context sensitivity we must evaluate a more overarching theory for coherency. I argue that building on the discussion of an expression-based approach to semantics we have a better formula for explaining intuitions regarding negative existentials. To do this, I argue that names originating in fiction refer to genuinely existing abstract artifacts allowing negative existentials to have truth-values. This results in an elegant semantics and the intuition that the negative existential is true is handled by the Gricean theory of conversational implicatures. (Abstract shortened by UMI.). [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2013
48. A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
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Pilkington, Sarah M., Crowhurst, Ross, Hilario, Elena, Nardozza, Simona, Fraser, Lena, Peng, Yongyan, Gunaseelan, Kularajathevan, Simpson, Robert, Tahir, Jibran, Deroles, Simon C., Templeton, Kerry, Luo, Zhiwei, Davy, Marcus, Cheng, Canhong, McNeilage, Mark, Scaglione, Davide, Liu, Yifei, Zhang, Qiong, Datson, Paul, De Silva, Nihal, Gardiner, Susan E., Bassett, Heather, Chagné, David, McCallum, John, Dzierzon, Helge, Deng, Cecilia, Wang, Yen-Yi, Barron, Lorna, Manako, Kelvina, Bowen, Judith, Foster, Toshi M., Erridge, Zoe A., Tiffin, Heather, Waite, Chethi N., Davies, Kevin M., Grierson, Ella P., Laing, William A., Kirk, Rebecca, Chen, Xiuyin, Wood, Marion, Montefiori, Mirco, Brummell, David A., Schwinn, Kathy E., Catanach, Andrew, Fullerton, Christina, Li, Dawei, Meiyalaghan, Sathiyamoorthy, Nieuwenhuizen, Niels, Read, Nicola, Prakash, Roneel, Hunter, Don, Zhang, Huaibi, McKenzie, Marian, Knäbel, Mareike, Harris, Alastair, Allan, Andrew C., Gleave, Andrew, Chen, Angela, Janssen, Bart J., Plunkett, Blue, Ampomah-Dwamena, Charles, Voogd, Charlotte, Leif, Davin, Lafferty, Declan, Souleyre, Edwige J. F., Varkonyi-Gasic, Erika, Gambi, Francesco, Hanley, Jenny, Yao, Jia-Long, Cheung, Joey, David, Karine M., Warren, Ben, Marsh, Ken, Snowden, Kimberley C., Lin-Wang, Kui, Brian, Lara, Martinez-Sanchez, Marcela, Wang, Mindy, Ileperuma, Nadeesha, Macnee, Nikolai, Campin, Robert, McAtee, Peter, Drummond, Revel S. M., Espley, Richard V., Ireland, Hilary S., Wu, Rongmei, Atkinson, Ross G., Karunairetnam, Sakuntala, Bulley, Sean, Chunkath, Shayhan, Hanley, Zac, Storey, Roy, Thrimawithana, Amali H., Thomson, Susan, David, Charles, Testolin, Raffaele, Huang, Hongwen, Hellens, Roger P., and Schaffer, Robert J.
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- 2018
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49. Subthalamic Nucleus Deep Brain Stimulation in Early Stage Parkinson’s Disease Is Not Associated with Increased Body Mass Index
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Sarah H. Millan, Mallory L. Hacker, Maxim Turchan, Anna L. Molinari, Amanda D. Currie, and David Charles
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Neurology. Diseases of the nervous system ,RC346-429 - Abstract
Previous studies suggest that deep brain stimulation of the subthalamic nucleus (STN-DBS) for Parkinson’s disease (PD) leads to weight gain. This study analyzes changes in body mass index (BMI) in 29 subjects from a prospective, single-blind trial of DBS in early stage PD (age 50–75, Hoehn & Yahr stage II off medication, treated with antiparkinsonian medications for ≥6 months but 0.05). BMI change over two years was not different between the groups (p=0.62, ODT = −0.89; DBS+ODT = −0.17). This study suggests that STN-DBS is not associated with weight gain in subjects with early stage PD. This finding will be tested in an upcoming FDA-approved phase III multicenter, randomized, double-blind, placebo-controlled, pivotal clinical trial evaluating DBS in early stage PD (ClinicalTrials.gov identifier NCT00282152).
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- 2017
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50. Examining the Potential Use of Instructionally-Relevant Assessment Data in Early Writing
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Parker, David Charles
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The writing performance of many school-aged children is consistently below levels necessary to produce positive outcomes. Early intervention frameworks are designed to help remedy this problem before it becomes more severe, but a key feature of early intervention frameworks--the use of data for targeting interventions--has not been sufficiently researched. This study examined the role of data from curriculum-based assessment for instructional design (CBA-ID) for targeting interventions in early writing. Participants included 147 first grade students from a larger study conducted in the Southeastern United States. Each student was identified as struggling in early literacy using measures of beginning reading. Students were placed into a supplementary writing intervention with tiers of support that were more (4 times per week for 45 min) or less (2 times per week for 30 min) intensive depending on screening scores. Students responded to early writing progress assessments during intervention. The resulting data were used to derive novel CBA-ID criteria and for longitudinal analyses that investigated students' growth patterns. Additional analyses examined the importance of data from CBA-ID, intervention intensity, and other demographic factors for predicting growth patterns of students. Results showed that the current CBA-ID criteria (i.e., 11-17 correct word sequences on an early writing measure) overlapped some, but not completely, with previous derivations of CBA-ID criteria (i.e., 8-14 correct word sequences). Results also suggested that students followed more than one type of growth pattern, and a solution with three separate patterns was identified based on empirical data and interpretability. The results from additional analyses suggested that CBA-ID data, in addition to gender, were significant predictors of growth pattern; but intervention intensity did not predict growth patterns. The current results were contextualized within previous research, and implications for practice and theoretical models of writing development were discussed. Specifically, the results of the study were discussed in terms of their contribution to (1) the role of instructionally-relevant assessment data in targeting interventions within an early intervention framework, and (2) the understanding of how early writing skills develop independently and in concert. Lastly, limitations to the study and future directions for early intervention research were outlined. [The dissertation citations contained here are published with the permission of ProQuest LLC. Further reproduction is prohibited without permission. Copies of dissertations may be obtained by Telephone (800) 1-800-521-0600. Web page: http://www.proquest.com/en-US/products/dissertations/individuals.shtml.]
- Published
- 2012
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