15 results on '"Pérez-Marín DC"'
Search Results
2. Potential for automatic detection of calving in beef cows grazing on rangelands from Global Navigate Satellite System collar data.
- Author
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García García MJ, Maroto Molina F, Pérez Marín CC, and Pérez Marín DC
- Subjects
- Female, Pregnancy, Animals, Cattle, Humans, Exploratory Behavior, Farmers, Livestock, Parturition, Dystocia veterinary, Cattle Diseases
- Abstract
Dystocia is one of the main causes of calf death around calving. In addition, peripartum deaths may occur due to other factors, such as weather or predators, especially in the case of grazing animals. Precision Livestock Farming (PLF) tools aimed at the automatic detection of calving may be useful for farmers, allowing cow assistance in case of dystocia or checking the condition of the cow-calf pair after calving. Such PLF systems are commercially available for dairy cows, but these tools are not suitable for rangelands, mainly due to power and connectivity constraints. Thus, since most commercial PLF tools for rangelands are based on Global Navigate Satellite System (GNSS) technology, the objective of this study was to design and evaluate several indicators built from data gathered with GNSS collars to characterise their potential for the detection of calving on rangelands. Location data from 57 cows, 42 of which calved during the study, were curated and analysed following a standardised procedure. Several indicators were calculated using two different strategies. The first approach consisted of having indicators that could be computed using the data of a single GNSS collar (cow indicators). The second strategy involved the use of data from several animals (herd indicators), which requires more animals to be monitored, but may allow the characterisation of social behaviour. Several indicators, such as the length of the daily trajectory or the sinuosity of cow path, showed significant differences between the pre- and postpartum periods, but no clear differences between calving day and previous days. Herd indicators, such as the distance to herd centroid or to the nearest peer were superior in terms of the detection of calving day, as cows showed isolation behaviour from 24 hours before calving. Relative indicators, i.e., the value of cow or herd indicators for the calving cow in relation to the average value of the same indicators for its herdmates, provided additional information on cow behaviour. For instance, according to the relative indicator for the change in daily trajectory, pregnant cows had a differential exploratory behaviour up to 14 days before calving. In conclusion, data from commercial GNSS collars proved to be useful for the computation of several indicators related to the occurrence of calving on rangelands. Some of those indicators showed changes from baseline values on the day before calving, which could serve to predict the onset of parturition., (Copyright © 2023 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
- Full Text
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3. Colostrum Quality Assessment in Dairy Goats: Use of an On-Farm Optical Refractometer.
- Author
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Pérez-Marín CC, Cano D, Arrebola FA, Petrusha VH, Skliarov PM, Entrenas JA, and Pérez-Marín DC
- Abstract
Failure of passive immunity transfer is one of the main causes of increased susceptibility to infectious agents in newborn kids. To ensure successful transfer of passive immunity, kids need to be fed high-quality colostrum, containing an adequate concentration of IgG. This work evaluated the quality of colostrum obtained in the first 3 days postpartum from Malagueña dairy goats. The IgG concentration in colostrum was measured using an ELISA as a reference method, and it was estimated by optical refractometer. Colostrum composition in terms of fat and protein was also determined. The mean concentration of IgG was 36.6 ± 2.3 mg/mL, 22.4 ± 1.5 mg/mL and 8.4 ± 1.0 mg/mL on days 1, 2 and 3 after parturition, respectively. Brix values obtained using the optical refractometer were 23.2%, 18.6% and 14.1% for days 1, 2 and 3, respectively. In this population, 89% of goats produced high-quality colostrum with IgG concentrations of >20 mg/mL on the day of parturition, but this percentage declined dramatically over the following 2 days. The quality of the fresh colostrum estimated with the optical refractometer was positively correlated with those obtained using ELISA ( r = 0.607, p = 0.001). This study highlights the importance of feeding first-day colostrum to newborn kids and demonstrates that the optical Brix refractometer is suitable for the on-farm estimation of IgG content in colostrum.
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- 2023
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4. Optimisation of the predictive ability of NIR models to estimate nutritional parameters in elephant grass through LOCAL algorithms.
- Author
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Fernández-Cabanás VM, Pérez-Marín DC, Fearn T, and Gonçalves de Abreu J
- Subjects
- Animals, Nutritive Value, Calibration, Algorithms, Animal Feed analysis, Spectroscopy, Near-Infrared methods
- Abstract
Elephant grass is a tropical forage widely used for livestock feed. The analytical techniques traditionally used for its nutritional evaluation are costly and time consuming. Alternatively, Near Infrared Spectroscopy (NIRS) technology has been used as a rapid analysis technique. However, in crops with high variability due to genetic improvement, predictive models quickly lose accuracy and must be recalibrated. The use of non-linear models such as LOCAL calibrations could mitigate these issues, although a number of parameters need to be optimized to obtain accurate results. The objective of this work was to compare the predictive results obtained with global NIRS calibrations and with LOCAL calibrations, paying special attention to the configuration parameters of the models. The results obtained showed that the prediction errors with the LOCAL models were between 1.6 and 17.5 % lower. The best results were obtained in most cases with a low number of selected samples (n = 100-250) and a high number of PLS terms (n = 20). This configuration allows a reduced computation time with high accuracy, becoming a valuable alternative for analytical determinations that require ruminal fluid, which would improve the welfare of the animals by avoiding the need to surgically prepare animals to estimate the nutritional value of the feeds., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 The Author(s). Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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5. NIR handheld miniature spectrometer to increase the efficiency of Iberian pig selection schemes based on chemical traits.
- Author
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Cáceres-Nevado JM, Garrido-Varo A, De Pedro-Sanz E, and Pérez-Marín DC
- Subjects
- Animals, Quality Control, Swine, Refractometry, Spectroscopy, Near-Infrared
- Abstract
Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.
- Published
- 2021
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6. Non-destructive Near Infrared Spectroscopy for the labelling of frozen Iberian pork loins.
- Author
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Cáceres-Nevado JM, Garrido-Varo A, De Pedro-Sanz E, Tejerina-Barrado D, and Pérez-Marín DC
- Subjects
- Animals, Discriminant Analysis, Food Labeling, Frozen Foods, Pork Meat standards, Swine, Freezing, Pork Meat analysis, Spectroscopy, Near-Infrared methods
- Abstract
Iberian pigs fed on acorns and pasture were slaughtered from January until March of 2018 and 2019. The meat from those Iberian pigs is a seasonal food that only can be found fresh, at the marketplace, during a limit period of the year. Selling frozen-thawed meat is a legal practice, but consumers must be informed about it on the product label. However, to declare as fresh meat, meat previously frozen, is one of the most frequent meat frauds. The present study compares the performance of two rather different Near Infrared Spectroscopy instruments, based on Fourier Transform and Linear Variable Filter technologies, for the in-situ detection of fresh and frozen-thawed acorns-fed Iberian pig loins using Partial Least Discriminant Analysis (PLS-DA). The performance of the models developed for both instruments offered a very high discriminant ability. Furthermore, the models showed consistent results and interpretation when were evaluated with several scalars and graphical methods., (Copyright © 2021 Elsevier Ltd. All rights reserved.)
- Published
- 2021
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7. Welfare Quality ® for dairy cows: towards a sensor-based assessment.
- Author
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Maroto Molina F, Pérez Marín CC, Molina Moreno L, Agüera Buendía EI, and Pérez Marín DC
- Subjects
- Animal Feed, Animal Husbandry methods, Animals, Behavior, Animal, Cattle Diseases diagnosis, Cattle Diseases prevention & control, Dairying methods, Farms, Female, Housing, Animal, Monitoring, Physiologic instrumentation, Animal Welfare trends, Cattle, Dairying instrumentation, Monitoring, Physiologic veterinary, Quality Control
- Abstract
This Research Reflection addresses the possibilities for Welfare Quality® to evolve from an assessment method based on data gathered on punctual visits to the farm to an assessment method based on sensor data. This approach could provide continuous and objective data, while being less costly and time consuming. Precision Livestock Farming (PLF) technologies enabling the monitorisation of Welfare Quality® measures are reviewed and discussed. For those measures that cannot be assessed by current technologies, some options to be developed are proposed. Picturing future dairy farms, the need for multipurpose and non-invasive PLF technologies is stated, in order to avoid an excessive artificialisation of the production system. Social concerns regarding digitalisation are also discussed.
- Published
- 2020
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8. Fourier transform near-infrared spectroscopy coupled to a long fibre optic head for the quality control of IBERIAN pork loins: Intact versus minced.
- Author
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Cáceres-Nevado JM, Garrido-Varo A, De Pedro-Sanz E, and Pérez-Marín DC
- Subjects
- Animals, Fats analysis, Fourier Analysis, Proteins analysis, Sus scrofa, Water chemistry, Red Meat analysis, Spectroscopy, Near-Infrared methods
- Abstract
Conventional chemical analyses of meat products are time-consuming, expensive and destructive. The advantages of NIR spectroscopy are its speed, portability, suitability for both at-line and on-line analysis, low cost and the possibility of simultaneously measuring many different parameters in a large number of samples. The purpose of this study was to develop and validate calibrations for the prediction of moisture, protein and fat in Iberian pig pork loins using an FT-NIR instrument coupled to a 5-m fibre optic sensor head. The best equations obtained for intact loin in both modes of analysis (full and optimal spectral range) displayed Standard Error of Cross-Validation (RMSECV) of 1.06% and 1.09% and Determination Coefficient of Cross-Validation (R
CV 2 ) of 0.69 and 0.77 for fat: RMSECV of 0.87% and 0.77% and RCV 2 of 0.67 and 0.73 for moisture; while for protein, the RMSECV values were 0.51% and 0.49% and the RCV 2 values were 0.66 and 0.70., (Copyright © 2019 Elsevier Ltd. All rights reserved.)- Published
- 2019
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9. A Low-Cost IoT-Based System to Monitor the Location of a Whole Herd.
- Author
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Maroto-Molina F, Navarro-García J, Príncipe-Aguirre K, Gómez-Maqueda I, Guerrero-Ginel JE, Garrido-Varo A, and Pérez-Marín DC
- Subjects
- Animals, Cattle, Dairying, Farms, Sheep, Wireless Technology, Behavior, Animal physiology, Biosensing Techniques methods, Geographic Information Systems, Monitoring, Physiologic methods
- Abstract
Animal location technologies have evolved considerably in the last 60 years. Nowadays, animal tracking solutions based on global positioning systems (GPS) are commercially available. However, existing devices have several constraints, mostly related to wireless data transmission and financial cost, which make impractical the monitorization of all the animals in a herd. The main objective of this work is to develop a low-cost solution to enable the monitorization of a whole herd. An IoT-based system, which requires some animals of the herd being fitted with GPS collars connected to a Sigfox network and the rest with low-cost Bluetooth tags, has been developed. Its performance has been tested in two commercial farms, raising sheep and beef cattle, through the monitorization of 50 females in each case. Several collar/tag ratios, which define the cost per animal of the solution, have been simulated. Results demonstrate that a low collar/tag ratio enable the monitorization of a whole sheep herd. A larger ratio is needed for beef cows because of their grazing behavior. Nevertheless, the optimal ratio depends on the purpose of location data. Large variability has been observed for the number of hourly and daily messages from collars and tags. The system effectiveness for the monitorization of all the animals in a herd has been certainly proved.
- Published
- 2019
- Full Text
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10. Evaluation of local approaches to obtain accurate near-infrared (NIR) equations for prediction of ingredient composition of compound feeds.
- Author
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Fernández-Ahumada E, Fearn T, Gómez-Cabrera A, Guerrero-Ginel JE, Pérez-Marín DC, and Garrido-Varo A
- Subjects
- Animals, Helianthus chemistry, Plant Proteins, Dietary chemistry, Reproducibility of Results, Triticum chemistry, Animal Feed analysis, Spectroscopy, Near-Infrared methods
- Abstract
This research work investigated new methods to improve the accuracy of intact feed calibrations for the near-infrared (NIR) prediction of the ingredient composition. When NIR reflection spectroscopy, together with linear models, was used for the prediction of the ingredient composition, the results were not always acceptable. Therefore, other methods have been investigated. Three different local methods (comparison analysis using restructured near-infrared and constituent data [CARNAC]), locally weighed regression [LWR], and LOCAL) were applied to a large (N = 20 320) and heterogeneous population of non-milled feed compounds for the NIR prediction of the inclusion percentage of wheat and sunflower meal, as representative of two different classes of ingredients. Compared with partial least-squares regression, results showed considerable reductions of standard error of prediction values for all methods and ingredients: reductions of 59, 47, and 50% with CARNAC, LWR, and LOCAL, respectively, for wheat, and reductions of 49, 45, and 43% with CARNAC, LWR, and LOCAL, respectively, for sunflower meal. These results are a valuable achievement in coping with legislation and manufacture requirements concerning the labeling of intact feedstuffs.
- Published
- 2013
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11. Data pre-processing to improve the mining of large feed databases.
- Author
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Maroto-Molina F, Gómez-Cabrera A, Guerrero-Ginel JE, Garrido-Varo A, Sauvant D, Tran G, Heuzé V, and Pérez-Marín DC
- Subjects
- Data Interpretation, Statistical, Medicago sativa, Animal Feed, Animal Husbandry methods, Data Mining methods, Databases, Factual
- Abstract
The information stored in animal feed databases is highly variable, in terms of both provenance and quality; therefore, data pre-processing is essential to ensure reliable results. Yet, pre-processing at best tends to be unsystematic; at worst, it may even be wholly ignored. This paper sought to develop a systematic approach to the various stages involved in pre-processing to improve feed database outputs. The database used contained analytical and nutritional data on roughly 20 000 alfalfa samples. A range of techniques were examined for integrating data from different sources, for detecting duplicates and, particularly, for detecting outliers. Special attention was paid to the comparison of univariate and multivariate solutions. Major issues relating to the heterogeneous nature of data contained in this database were explored, the observed outliers were characterized and ad hoc routines were designed for error control. Finally, a heuristic diagram was designed to systematize the various aspects involved in the detection and management of outliers and errors.
- Published
- 2013
- Full Text
- View/download PDF
12. Handling of missing data to improve the mining of large feed databases.
- Author
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Maroto-Molina F, Gómez-Cabrera A, Guerrero-Ginel JE, Garrido-Varo A, Sauvant D, Tran G, Heuzé V, and Pérez-Marín DC
- Subjects
- Data Interpretation, Statistical, Animal Feed, Data Mining methods, Databases, Factual
- Abstract
Feed databases often have missing data. Despite their potentially major effect on data analysis (e.g., as a source of biased results and loss of statistical power), database managers and nutrition researchers have paid little attention to missing data. This study evaluated various methods of handling missing data using mining outputs from a database containing data on chemical composition and nutritive value for 18,864 alfalfa samples. A complete reference dataset was obtained comprising the 2,303 cases with no missing data for the attributes CP, crude fiber (CF), NDF, ADF and ADL. This dataset was used to simulate 2 types of missing data (at random and not at random), each with 2 loss intensities (33 and 66%), thus yielding a total of 4 incomplete datasets. Missing data from these datasets were handled using 2 deletion methods and 4 imputation methods, and outputs in terms of the identification and typing of alfalfa (using ANOVA and descriptive statistics) and of correlations between attributes (using regressions) were compared with outputs from the complete dataset. Imputation methods, particularly model-based versions, were found to perform better than deletion methods in terms of maximizing information use and minimizing bias although the extent of differences between methods depended on the type of missing data. The best approximation to the uncertainty value was provided by multiple imputation methods. It was concluded that the choice of the most suitable method for handling missing data depended both on the type of missing data and on the purpose of data analysis.
- Published
- 2013
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13. Building a metadata framework for sharing feed information in Spain.
- Author
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Maroto-Molina F, Gómez-Cabrera A, Guerrero-Ginel JE, Garrido-Varo A, and Pérez-Marín DC
- Subjects
- Animals, Cooperative Behavior, Database Management Systems, Online Systems, Software, Spain, Animal Feed, Databases, Bibliographic, Information Storage and Retrieval methods
- Abstract
Information about the nutritional aspects and uses of feed is of widespread interest, hence systematic efforts of laboratories to obtain it. The way this information is currently being handled leaves something to be desired, underscoring the need to use computerized systems and statistical techniques that allow the management of large volumes of heterogeneous information. This project seeks to develop a structure that will facilitate the exchange and exploitation of information on feeds produced in Spain. To this end, metadata and data mining techniques have been adopted by the Feed Information Service at the University of Cordoba. The structure has been designed to work on the basis of a server-client architecture, in which information is stored on local software (Califa) by its own creators so that it can subsequently be incorporated into a database server where it can be accessed online. Various aspects of the structure are described in this paper: organization (participants and data shared), format (physical features), logistics (data description), quality (reliability of information), legality (correct use of data), and financing (revenue and expenditure). An indication is given of the amount of information accumulated to date, now exceeding 200,000 numerical data and associated metadata, arranged in several thematic databases. The activities carried out highlight the heterogeneous nature of the information produced, as well as the large number of errors and ambiguities that slip through the normal filters and reach the end-user of the data.
- Published
- 2011
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14. Optimization of discriminant partial least squares regression models for the detection of animal by-product meals in compound feedingstuffs by near-infrared spectroscopy.
- Author
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Pérez-Marín DC, Garrido-Varo A, and Guerrero JE
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- Animals, Computer Simulation, Discriminant Analysis, Least-Squares Analysis, Models, Chemical, Quality Control, Regression Analysis, Reproducibility of Results, Sensitivity and Specificity, Algorithms, Animal Feed analysis, Food Analysis methods, Spectrophotometry, Infrared methods
- Abstract
This paper evaluates two multivariate strategies for classifying near-infrared (NIR) spectroscopic data for the detection of animal by-product meals (henceforth generically termed AbP) as an ingredient in compound feedingstuffs. Classification models were developed to discriminate between the presence and absence of animal-origin meals in compound feeds using two forms of discriminant partial least squares (PLS) regression: the algorithms PLS1 and PLS2. The training set comprised 433 commercial feeds, of which 148 contained AbP and the other 285 were stated to be AbP-free. Since the initial set contained unequal numbers of each class, the effect of this imbalance was analyzed by applying the same algorithms to a training set containing equal numbers of AbP-free and AbP-containing samples. The best classification model (97.42% of samples correctly classified), obtained with PLS2, that showed less sensitivity to the use of class-unbalanced sets, was externally validated using a set of 18 samples (10 AbP-containing and 8 AbP-free); all samples were correctly classified, except for one AbP-free sample that was classified as containing AbP (false positive). The results suggest that the application of PLS discriminant analysis to NIR spectroscopic data enables detection of AbP, a feed ingredient banned since the bovine spongiform encephalopathy (BSE) crisis; this confirms the value of NIRS qualitative analysis for product authentication purposes.
- Published
- 2006
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15. Near-infrared reflectance spectroscopy for predicting amino acids content in intact processed animal proteins.
- Author
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De la Haba MJ, Garrido-Varo A, Guerrero-Ginel JE, and Pérez-Marín DC
- Subjects
- Animal Feed analysis, Animals, Bone and Bones chemistry, Cattle, Meat Products analysis, Poultry Products analysis, Swine, Amino Acids analysis, Proteins chemistry, Spectroscopy, Near-Infrared
- Abstract
Near-infrared calibrations were developed for the instantaneous prediction of amino acids composition of processed animal proteins (PAPs). Two sample presentation modes were compared (ground vs intact) for demonstrating the viability of the analysis in the intact form, avoiding the need for milling. Modified partial least-squares (MPLS) equations for the prediction of amino acids in PAPs were developed using the same set of samples (N = 92 PAPs) analyzed in ground and intact form and in three cups differing in the optical window size. The standard error for cross validation (SECV) and the coefficient of determination (1-VR) values yielded with the calibrations developed using the samples analyzed in the intact form showed similar or even better accuracy than those obtained with finely ground samples. The excellent predictive ability (1-VR > 0.90; CV < 3.0%) obtained for the prediction of amino acids in intact processed animal proteins opens an enormous expectative for the on-line implementation of NIRS technology in the processing and marketing of these important protein feed ingredients, alleviating the costs and time associated with the routine quality controls.
- Published
- 2006
- Full Text
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