35 results on '"Pérez Rodríguez, Alfonso"'
Search Results
2. Math4fish: New tools for mathematical modeling in the scientific advice of Spanish fisheries
- Author
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Rincón-Hidalgo, Margarita, De la Cruz Muñoz, Andrés, Pérez Rodríguez, Alfonso, Jiménez Gaseni, Andrea, and Zúñiga Basualto, María José
- Subjects
Pesquerías ,Centro Oceanográfico de Cádiz - Published
- 2022
3. Evaluation of harvest control rules for a group of interacting commercial stocks using a multispecies MSE framework
- Author
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Pérez-Rodríguez, Alfonso, primary, Umar, Ibrahim, additional, Goto, Daisuke, additional, Howell, Daniel, additional, Mosqueira, Iago, additional, and González-Troncoso, Diana, additional
- Published
- 2022
- Full Text
- View/download PDF
4. Disentangling genetic change from phenotypic response in reproductive parameters of Flemish Cap cod Gadus morhua
- Author
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Pérez-Rodríguez, Alfonso, Morgan, Joanne, Koen-Alonso, Mariano, and Saborido-Rey, Fran
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- 2013
- Full Text
- View/download PDF
5. Evaluation of harvest control rules for a group of interacting commercial stocks using a multispecies MSE framework
- Author
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Wageningen University and Research Centre, Institute of Marine Research (Norway), Pérez-Rodríguez, Alfonso, Umar, Ibrahim, Goto, Daisuke, Howell, Daniel, Mosqueira, Iago, González-Troncoso, Diana, Wageningen University and Research Centre, Institute of Marine Research (Norway), Pérez-Rodríguez, Alfonso, Umar, Ibrahim, Goto, Daisuke, Howell, Daniel, Mosqueira, Iago, and González-Troncoso, Diana
- Abstract
[EN] In this study, a multispecies gadget model (GadCap) simulating the interactions among the Flemish Cap cod (Gadus morhua), redfish (Sebastes spp.), and shrimp (Pandalus borealis) has been incorporated as the operating model in a management strategy evaluation (MSE) framework (a4a-FLR) to test the performance of multiple combinations of harvest control rules (HCRs) for the three stocks when recruitment uncertainty and assessment error are accounted for. The results indicate that due to the strong trophic interactions, it is not possible to achieve the precautionary exploitation of all the stocks at the same time. Maintaining shrimp biomass above the limit reference point (B) would require unsustainable fishing pressure on cod and redfish to reduce predation mortality. In contrast, maintaining cod biomass above B would involve high predation on and high risk of collapse of the shrimp and redfish stocks. The implementation of alternative two-stage HCRs would reduce predation, resulting in higher productivity and lower probability of collapse for cod and redfish. The results of this study support the need of accounting for species interactions when designing management strategies for a group of interdependent commercial stocks. Copyright © 2023 Canadian Science Publishing, [FR] Un modèle multi-espèces Gadget (GadCap) qui simule les interactions de la morue (Gadus morhua), des sébastes (Sebastes spp.) et de la crevette nordique (Pandalus borealis) sur le bonnet Flamand a été intégré comme modèle d’exploitation dans un cadre (a4a-FLR) d’évaluation de stratégies de gestion (ESG) afin de valider la performance de différentes combinaisons de règles de contrôle des prises (RCP) pour les trois stocks quand l’incertitude reliée au recrutement et l’erreur d’évaluation sont prises en compte. Les résultats indiquent que, en raison des fortes interactions trophiques, l’atteinte de l’exploitation prudente simultanée de tous les stocks n’est pas possible. Le maintien d’une biomasse de crevette supérieure au point de référence limite (Blim) nécessiterait une pression de pêche à la morue et aux sébastes non durable pour réduire la mortalité par prédation. Le maintien de la biomasse de morue au-dessus du Blim nécessiterait quant à lui une forte prédation et un risque élevé d’effondrement des stocks de crevette et de sébastes. L’application de différentes RCP en deux volets réduirait la prédation, entraînant une productivité accrue et une plus faible probabilité d’effondrement de la morue et des sébastes. Les résultats de l’étude soulignent la nécessité de tenir compte des interactions d’espèces dans la conception de stratégies de gestion pour un groupe de stocks commerciaux interdépendants.
- Published
- 2022
6. International Bottom Trawl Survey Working Group (IBTSWG). ICES Scientific Reports, 3:69.
- Author
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Laffargue, P. (Pascal), van Hal, R. (Ralf), Velasco, F. (Francisco), Alvestad, Anja Helene, Auber, Arnaud, Baldó, Francisco, Batsleer, Jurgen, Baudron, Alan, Bland, Barbara, Börjesson, Patrik, Burns, Finlay, Chaves, Corina, Chun, Chen, Cresson, Pierre, Croll, Jasper, Ellis, Jim, Giraldo, Carolina, Girardin, Raphaël, Hatton, Benjamin, Haslob, Holger, Kelly, Ruth, Kloppmann, Matthias, Kvaavik, Cecilia, Kynoch, Rob, Laffargue, Pascal, Miethe, Tanja, Mudde, Quiten, Neumann, Hermann, Needle, Coby, Pérez-Rodríguez, Alfonso, Rosen, Shale Pettit, Reecht, Yves, Rodriguez-Buelna, Alondra Sofia, Schuchert, Pia, Sell, Anne, SInclair, Louisa, Soni, Vaishav, Stokes, David, Underwood, Mélanie, van Hal, Ralf, Walker, N., Wieland, Kai Ulrich, Laffargue, P. (Pascal), van Hal, R. (Ralf), Velasco, F. (Francisco), Alvestad, Anja Helene, Auber, Arnaud, Baldó, Francisco, Batsleer, Jurgen, Baudron, Alan, Bland, Barbara, Börjesson, Patrik, Burns, Finlay, Chaves, Corina, Chun, Chen, Cresson, Pierre, Croll, Jasper, Ellis, Jim, Giraldo, Carolina, Girardin, Raphaël, Hatton, Benjamin, Haslob, Holger, Kelly, Ruth, Kloppmann, Matthias, Kvaavik, Cecilia, Kynoch, Rob, Laffargue, Pascal, Miethe, Tanja, Mudde, Quiten, Neumann, Hermann, Needle, Coby, Pérez-Rodríguez, Alfonso, Rosen, Shale Pettit, Reecht, Yves, Rodriguez-Buelna, Alondra Sofia, Schuchert, Pia, Sell, Anne, SInclair, Louisa, Soni, Vaishav, Stokes, David, Underwood, Mélanie, van Hal, Ralf, Walker, N., and Wieland, Kai Ulrich
- Abstract
The International Bottom Trawl Survey Working Group (IBTSWG) coordinates fishery-inde-pendent multispecies bottom-trawl surveys within the ICES area. These long-term monitoring surveys provide data for stock assessments and facilitate examination of changes in fish distri-bution and abundance. The group also promotes the standardization of fishing gears and meth-ods and survey coordination. This report summarizes the national contributions in 2020–2021 and plans for the 2021–2022 surveys coordinated by IBTSWG. In the North Sea, the surveys are performed in quarters (Q) Q1 and Q3 while in the Northeast Atlantic the surveys are conducted in Q1, Q3, and Q4 with a suite of 14 national surveys covering a large area of continental shelf that ranges from North of Scotland to the Gulf of Cádiz. Despite the COVID-measures and bad weather, most surveys were able to complete the majority of the planned hauls. The Portuguese survey (PT-GFS-Q4) was cancelled in 2020 due to issues associated with the new vessel and a COVID-outbreak. A COVID-related delay in submitting the cruise application form for the French CGFS20 survey resulted in no authorisation to trawl in UK waters and only 70% of the core stations were completed. Issues with the UK permits, were also experienced in the North Sea surveys, only being resolved at the last moment, expected to be a returning issue. Therefore, IBTSWG addressed the permit issue in further detail in order to better evaluate the impact and propose possible solutions. All surveys, except for the Spanish GCGF-Q1 21 which is cancelled due to a vessel refit, are planned to take place according to the manuals in the next year. The SCOROC Q3 20 survey recorded second highest recruitment of zero group haddock on the Rockall Bank since the start of the new survey series in 2011. The North Sea Q1 21 survey rec-orded good recruitment of haddock as well, and high recruitment of mackerel, while overall herring recruitment seemed low except for three excepti
- Published
- 2021
7. Working Group on Mixed Fisheries Advice (WGMIXFISH-ADVICE; outputs from 2020 meeting). ICES Scientific Reports
- Author
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Moore, Claire, Silva, C. (Cristina), Aristegui-Ezquibela, Mikel, Ball, Johnathan, Bertignac, Michel, Bouch, Paul, Brunel, Thomas, Cerviño, Santiago, Cole, Harriet, Desender, Marieke, Dolder, Paul, Fallon, Niall, García, Dorleta, Kelly, Ruth, Lövgren, Johan, Lundy, Mathieu, Mendes, Hugo, Orio, Alessandro, Pawlowski, Lionel, Pérez-Rodríguez, Alfonso, Rincón-Hidalgo, Margarita, Sampedro-Pastor, Paz, Sánchez, Sonia, Sys, Klaas, Taylor, Marc, Trijoulet, Vanessa, Vermard, Youen, Moore, Claire, Silva, C. (Cristina), Aristegui-Ezquibela, Mikel, Ball, Johnathan, Bertignac, Michel, Bouch, Paul, Brunel, Thomas, Cerviño, Santiago, Cole, Harriet, Desender, Marieke, Dolder, Paul, Fallon, Niall, García, Dorleta, Kelly, Ruth, Lövgren, Johan, Lundy, Mathieu, Mendes, Hugo, Orio, Alessandro, Pawlowski, Lionel, Pérez-Rodríguez, Alfonso, Rincón-Hidalgo, Margarita, Sampedro-Pastor, Paz, Sánchez, Sonia, Sys, Klaas, Taylor, Marc, Trijoulet, Vanessa, and Vermard, Youen
- Published
- 2021
8. Report of the Working Group on Biological Parameters (WGBIOP) 2020
- Author
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Carbonara, P. (Pierluigi), Coad Davies, J., van Damme, C.J.G. (Cindy), Aanestad, J., Allegaert, Wim, Beier, U., Bekaert, Karen, Canha, A.M.L., Carbonara, Pierluigi, Davies, Julie Coad, Farias, Inês, Follesa, Maria Cristina, Gault, Mandy, Gillespie-Mules, Ruadhán, Haase, Stephanie, Hilvarsson, Annelie, Hüssy, Karin, Korta, María, Krüger-Johnsen, María, Krumme, Uwe, Landa, Jorge, Mahé, Kélig, Maxwell, David, McCormick, Helen, Mirny, Zuzanna, Nunes, Cristina, Ofridopoulou, Konstantina, Pérez-Rodríguez, Alfonso, Piñeiro-Álvarez, Carmen Gloria, Raid, Tiit, Raitaniemi, Jari, Sapounidis, Argyris, Sauger, Carine, Smith, J., Stransky, Christoph, Tomkiewicz, J., Torreele, Els, Torres-Cutillas, Pedro, Ulleweit, Jens, van Damme, Cindy, Visconti, V., Vxtale, Francesca, Carbonara, P. (Pierluigi), Coad Davies, J., van Damme, C.J.G. (Cindy), Aanestad, J., Allegaert, Wim, Beier, U., Bekaert, Karen, Canha, A.M.L., Carbonara, Pierluigi, Davies, Julie Coad, Farias, Inês, Follesa, Maria Cristina, Gault, Mandy, Gillespie-Mules, Ruadhán, Haase, Stephanie, Hilvarsson, Annelie, Hüssy, Karin, Korta, María, Krüger-Johnsen, María, Krumme, Uwe, Landa, Jorge, Mahé, Kélig, Maxwell, David, McCormick, Helen, Mirny, Zuzanna, Nunes, Cristina, Ofridopoulou, Konstantina, Pérez-Rodríguez, Alfonso, Piñeiro-Álvarez, Carmen Gloria, Raid, Tiit, Raitaniemi, Jari, Sapounidis, Argyris, Sauger, Carine, Smith, J., Stransky, Christoph, Tomkiewicz, J., Torreele, Els, Torres-Cutillas, Pedro, Ulleweit, Jens, van Damme, Cindy, Visconti, V., and Vxtale, Francesca
- Abstract
The main objective of the Working Group on Biological Parameters (WGBIOP) is to review the status, issues, developments, and quality assurance of biological parameters for use in assess-ments and management that are in line with the requirements of end-users. In this final year of the three-year term, WGBIOP operated under challenging circumstances due to COVID-19 measures. The initial action plan was replaced by a more flexible one, where online plenary and subgroup meetings were spread over the year with intersessional work to finalize the proposed deliverables. WGBIOP continued the review of past exchanges and workshops under the remit of the working group. Since 2019, these calibrations on age, maturity, and larvae identification have been carried out in SmartDots, an online platform for sharing images and facilitating the reading of otoliths, staging of gonads, and identification of early life stages. Developments are underway to include an improved calculation of modal age and error matrices in the SmartDots standard report. WGBIOP investigated ways to incorporate error matrices into assessments and studied the effect of this inclusion together with stock assessors. Requests for new exchanges and workshops were reviewed, with a focus on stocks to be bench-marked in the coming years. Issue lists were scrutinized, problems identified, and information provided to stock coordinators via regular channels and through the Stock Identification Data-base (SID). Despite close cooperation with stock assessors and continued efforts, it has not been possible to further streamline the WGBIOP workflow with the benchmark process. This will be addressed with the Advisory Committee. The need for validation studies was stressed by the repeated low levels of agreement between readers of some stocks and recurring issues and recommendations to WGBIOP. Lack of resources is the main obstacle. As a first step for measures to prioritize validation studies, WGBIOP iden-tified precision
- Published
- 2020
9. Report of the Working Group on Biological Parameters (WGBIOP) 2020
- Author
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Godiksen, Jane Aaestad, Allegaert, Wim, Beier, Ulrika, Bekaert, Karen, Canha, A.M.L., Carbonara, Pierluigi, Davies, Julie Coad, Farias, Inês, Follesa, Maria Cristina, Gault, Mandy, Gillespie-Mules, Ruadhán, Haase, Stephanie, Hilvarsson, Annelie, Hüssy, Karin, Korta, María, Krüger-Johnsen, María, Krumme, Uwe, Landa, Jorge, Mahé, Kélig, Maxwell, David, McCormick, Helen, Mirny, Zuzanna, Nunes, Cristina, Ofridopoulou, Konstantina, Pérez-Rodríguez, Alfonso, Piñeiro-Álvarez, Carmen Gloria, Raid, Tiit, Raitaniemi, Jari, Sapounidis, Argyris, Sauger, Carine, Torres-Cutillas, Pedro, Godiksen, Jane Aaestad, Allegaert, Wim, Beier, Ulrika, Bekaert, Karen, Canha, A.M.L., Carbonara, Pierluigi, Davies, Julie Coad, Farias, Inês, Follesa, Maria Cristina, Gault, Mandy, Gillespie-Mules, Ruadhán, Haase, Stephanie, Hilvarsson, Annelie, Hüssy, Karin, Korta, María, Krüger-Johnsen, María, Krumme, Uwe, Landa, Jorge, Mahé, Kélig, Maxwell, David, McCormick, Helen, Mirny, Zuzanna, Nunes, Cristina, Ofridopoulou, Konstantina, Pérez-Rodríguez, Alfonso, Piñeiro-Álvarez, Carmen Gloria, Raid, Tiit, Raitaniemi, Jari, Sapounidis, Argyris, Sauger, Carine, and Torres-Cutillas, Pedro
- Published
- 2020
10. Changes and trends in the demersal fish community of the Flemish Cap, Northwest Atlantic, in the period 1988–2008
- Author
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Pérez-Rodríguez, Alfonso, Koen-Alonso, Mariano, and Saborido-Rey, Fran
- Published
- 2012
- Full Text
- View/download PDF
11. MYOARM: prótesis robótica con sensado emg y entrenamiento con redes neuronales
- Author
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Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, Linares Barranco, Alejandro, Beltrán, Ana M. (Coordinador), Félix Ángel, Manuel (Coordinador), Beltrán, Ana M., Félix Ángel, Manuel, Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, and Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores
- Subjects
Exoskeleton ,EMG ,Protésica ,Neural Network ,Redes neuronales ,Exoesqueleto ,Prothesis - Abstract
El proyecto consiste en la creación de un brazo robótico controlado remotamente a través de un brazalete desarrollado por Thalmic Labs, el cual es capaz de leer los biopotenciales de los músculos residentes del muñón de los usuarios. Este proyecto, tiene como propósito la creación de una alternativa económica a las prótesis activas no invasivas que existen en la actualidad. Nuestra prótesis es capaz de realizar las mismas funciones, pero a un precio mucho más asequible. Para poder realizar todas las funciones que una articulación normal, el brazo cuenta con varios elementos: Cuerdas que simulan tendones y permiten el movimiento de los dedos, engranajes que permiten el giro de la muñeca y motores, los cuales son capaces de generar el movimiento en función de los datos extraídos del brazalete. El brazalete es el encargado de transmitir la información de la mano al brazo robótico a través de un módulo inalámbrico que lo conecta con el ordenador, donde la señal que extrae el brazalete pasa por un proceso de filtrado para quedarnos con la información que nos interesa y transmitirla mediante el puerto USB a un microcontrolador, el cual será el encargado de mover los motores según las señales que reciba. Para evitar errores en la medida de los sensores, la información recibida por el pc proveniente del brazalete pasa un proceso de entrenamiento mediante redes neuronales antes de ser enviada al brazo robótico. The project consists of the creation of a robotic arm controlled remotely through a brace developed by Thalmic Labs, which can read the biopotentials of the muscles of the limb of the users. This project aims to create an economic alternative to noninvasive active prostheses that exist today. Our prosthesis can perform the same functions but at a so much affordable price. To perform all the functions of a normal joint, the arm has several elements. Strings that simulate tendons and allow the movement of the fingers, gears that allow the rotation of the wrist and motors, which can generate movement based on the data extracted from the bracelet. The bracelet is responsible for transmitting information from the hand to the robotic arm through a wireless module that connects it with the computer, where the signal that extracts the bracelet goes through a filtering process to keep the information that interests us and Transmit it through the USB port to a microcontroller, which will be in charge of moving the engines according to the signals received. To avoid errors in the measurement of the sensors, the information received from the bracelet is trained in the computer using a Neural Network architecture before sending the information to the robotic arm. Universidad de Sevilla. TEP- 108: Robótica y Tecnología de Computadores
- Published
- 2019
12. Shrimp fishery and natural disturbance affect longevity of the benthic invertebrate community in the Noordzee-kustzone Natura2000 area
- Author
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Pérez Rodríguez, Alfonso and van Kooten, Tobias
- Subjects
Onderz. Form. D ,WIAS ,Life Science - Abstract
The Noordzeekustzone is an important fishing ground for fishing vessels targeting brown shrimp (Crangon crangon). Shrimp trawling is by far the dominant fishing activity in this area. However, the effect of shrimp fishery on the benthic invertebrate community has never been clearly established. It is important to establish this effect (or lack of effect) because the Noordzeekustzone is a designated Natura 2000 area, with a policy target to improve the quality of the seafloor habitat (so-called H1110b,permanently submerged sand banks).In this paper, the longevity composition of the benthic community is studied in relation to environmental variables. First the longevity composition is estimated for seafloor habitats and the effect of depth,grainsize, tidal shear stress and trawling intensity on the longevity composition is estimated and used to derive quantitative relationships that can be used to determine the changes in the benthic community and the effect of natural and human pressures. The analysis is carried out using dredge sampling data,which effectively samples only the larger individuals (>0.5cm) in the upper 7cm of the sediment. The methodology developed in the FP7-project BENTHIS (Rijnsdorp et al, 2015) was used to assess the changes in the benthic community in the Noordzeekustzone and the importance of all those candidate factors with special attention to fishing effort. In this study we find clear evidence that intensive shrimp trawling is associated with a reduction in the longevity of the benthic invertebrate community. However, the direction and intensity of that impact is determined by the wind regime in the area, which we take as a proxy for the degree and/or frequency of natural disturbance of the seafloor. The entire Noordzeekustzone area is subject to strong natural disturbance, and it has often been suggested that trawling has no effects in such areas. Our analysis shows otherwise. Even within this highly dynamic area there is a clear gradient along the magnitude of natural disturbance, in the effect of shrimp fishing. At the lower end, we find that shrimp trawling truncates community longevity, while at the higher end shrimp trawling actually enhances longevity. The mechanism for this reversal remains to be studied. To our knowledge, this is the first study wherea clear effect of shrimp trawling on the benthic ecosystem has been found in empirical data.This study shows a statistically significant effect of an admitted economic activity on the seafloor in a Natura2000 area where protection of seafloor habitat is one of the key reasons for the protection. The admission of shrimp trawling in this area has been granted based on an appropriate assessment which concluded that there are no known significant effects of the activity on the seafloor habitat. The statistically significant results of this study indicate that there are effects and hence warrant furtherstudy to determine significance in the sense of the natura2000 framework.
- Published
- 2019
13. Selecting ecosystem indicators for fisheries targeting highly migratory species: An EU project to advance the operationalization of the EAFM in ICCAT and IOTC
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Juan-Jordá, María José, Murua, Hilario, Apostolaki, P., Lynam, Christopher Philip, Pérez-Rodríguez, Alfonso, Báez, José Carlos, Abascal, Francisco Javier, Coelho, Rui, Todorovic, S., Billet, N., Uyarra, M.C., Andonegi, Eider, and Lopez, J.
- Subjects
Centro Oceanográfico de Málaga ,Pesquerías - Abstract
Several international legal agreements and guidelines have set the minimum standards and key principles to guide the implementation of an ecosystem approach to fisheries management (EAFM). However, the implementation of an EAFM in tuna Regional Fisheries Management Organizations (RFMOs) has been patchy and lack a long-term plan, vision and guidance on how to operationalize it. The Specific Contract N0 2 “selecting ecosystem indicators for fisheries targeting highly migratory species-” (SC02 project) under the Framework Contract - EASME/ EMFF/2016/008 provisions of Scientific Advice for Fisheries Beyond EU Waters- addresses several scientific challenges and provides insights to support the implementation of an EAFM through collaboration and consultation with the International Commission for the Conservation of Atlantic Tunas (ICCAT) and the Indian Ocean Tuna Commission (IOTC). Specifically, this project first highlights properties of success and best practices from other regions of the world in operationalizing the ecosystem approach that potentially could be transferred to ICCAT and IOTC. Second, it delivered a list of potential ecosystem indicators of relevance to tuna RFMOs (ICCAT and IOTC) that are suitable to track the impacts of fisheries targeting tuna and tuna-like species on the broader pelagic ecosystem. Third, it designed a general framework based on a rule-based decision tree to provide guidance on how reference points could be set and used for diverse types of ecosystem indicators. Fourth, it proposed candidate ecoregions within the Atlantic and Indian Oceans which could be used to guide region-based ecosystem plans, assessments and research to ultimately provide better ecosystem-based advice to inform fisheries management. Fifth, it developed two pilot ecosystem plans for two case study regions, the tropical ecoregion within the ICCAT convention area, and the temperate ecoregion within the IOTC convention area. At this stage, these pilot ecosystem plans aim to create awareness about the need for ecosystem planning, start a discussion about the elements that need to be part of a planning process, and initiate a discussion in ICCAT and IOTC about the potential needs of ecosystem plans and their function. Finally, this project provided recommendations to foster the potential development, use, and implementation of ecosystem plans in ICCAT and IOTC.
- Published
- 2019
14. MYOARM: prótesis robótica con sensado emg y entrenamiento con redes neuronales
- Author
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Beltrán, A.M., Félix Ángel, Manuel, Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores, Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, Linares Barranco, Alejandro, Beltrán, A.M., Félix Ángel, Manuel, Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores, Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, and Linares Barranco, Alejandro
- Abstract
El proyecto consiste en la creación de un brazo robótico controlado remotamente a través de un brazalete desarrollado por Thalmic Labs, el cual es capaz de leer los biopotenciales de los músculos residentes del muñón de los usuarios. Este proyecto, tiene como propósito la creación de una alternativa económica a las prótesis activas no invasivas que existen en la actualidad. Nuestra prótesis es capaz de realizar las mismas funciones, pero a un precio mucho más asequible. Para poder realizar todas las funciones que una articulación normal, el brazo cuenta con varios elementos: Cuerdas que simulan tendones y permiten el movimiento de los dedos, engranajes que permiten el giro de la muñeca y motores, los cuales son capaces de generar el movimiento en función de los datos extraídos del brazalete. El brazalete es el encargado de transmitir la información de la mano al brazo robótico a través de un módulo inalámbrico que lo conecta con el ordenador, donde la señal que extrae el brazalete pasa por un proceso de filtrado para quedarnos con la información que nos interesa y transmitirla mediante el puerto USB a un microcontrolador, el cual será el encargado de mover los motores según las señales que reciba. Para evitar errores en la medida de los sensores, la información recibida por el pc proveniente del brazalete pasa un proceso de entrenamiento mediante redes neuronales antes de ser enviada al brazo robótico., The project consists of the creation of a robotic arm controlled remotely through a brace developed by Thalmic Labs, which can read the biopotentials of the muscles of the limb of the users. This project aims to create an economic alternative to noninvasive active prostheses that exist today. Our prosthesis can perform the same functions but at a so much affordable price. To perform all the functions of a normal joint, the arm has several elements. Strings that simulate tendons and allow the movement of the fingers, gears that allow the rotation of the wrist and motors, which can generate movement based on the data extracted from the bracelet. The bracelet is responsible for transmitting information from the hand to the robotic arm through a wireless module that connects it with the computer, where the signal that extracts the bracelet goes through a filtering process to keep the information that interests us and Transmit it through the USB port to a microcontroller, which will be in charge of moving the engines according to the signals received. To avoid errors in the measurement of the sensors, the information received from the bracelet is trained in the computer using a Neural Network architecture before sending the information to the robotic arm.
- Published
- 2019
15. MYOARM: prótesis robótica con sensado emg y entrenamiento con redes neuronales
- Author
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Beltrán, Ana M., Félix Ángel, Manuel, Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores, Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, Linares Barranco, Alejandro, Beltrán, Ana M., Félix Ángel, Manuel, Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores, Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, and Linares Barranco, Alejandro
- Abstract
El proyecto consiste en la creación de un brazo robótico controlado remotamente a través de un brazalete desarrollado por Thalmic Labs, el cual es capaz de leer los biopotenciales de los músculos residentes del muñón de los usuarios. Este proyecto, tiene como propósito la creación de una alternativa económica a las prótesis activas no invasivas que existen en la actualidad. Nuestra prótesis es capaz de realizar las mismas funciones, pero a un precio mucho más asequible. Para poder realizar todas las funciones que una articulación normal, el brazo cuenta con varios elementos: Cuerdas que simulan tendones y permiten el movimiento de los dedos, engranajes que permiten el giro de la muñeca y motores, los cuales son capaces de generar el movimiento en función de los datos extraídos del brazalete. El brazalete es el encargado de transmitir la información de la mano al brazo robótico a través de un módulo inalámbrico que lo conecta con el ordenador, donde la señal que extrae el brazalete pasa por un proceso de filtrado para quedarnos con la información que nos interesa y transmitirla mediante el puerto USB a un microcontrolador, el cual será el encargado de mover los motores según las señales que reciba. Para evitar errores en la medida de los sensores, la información recibida por el pc proveniente del brazalete pasa un proceso de entrenamiento mediante redes neuronales antes de ser enviada al brazo robótico., The project consists of the creation of a robotic arm controlled remotely through a brace developed by Thalmic Labs, which can read the biopotentials of the muscles of the limb of the users. This project aims to create an economic alternative to noninvasive active prostheses that exist today. Our prosthesis can perform the same functions but at a so much affordable price. To perform all the functions of a normal joint, the arm has several elements. Strings that simulate tendons and allow the movement of the fingers, gears that allow the rotation of the wrist and motors, which can generate movement based on the data extracted from the bracelet. The bracelet is responsible for transmitting information from the hand to the robotic arm through a wireless module that connects it with the computer, where the signal that extracts the bracelet goes through a filtering process to keep the information that interests us and Transmit it through the USB port to a microcontroller, which will be in charge of moving the engines according to the signals received. To avoid errors in the measurement of the sensors, the information received from the bracelet is trained in the computer using a Neural Network architecture before sending the information to the robotic arm.
- Published
- 2019
16. MYOARM: prótesis robótica con sensado emg y entrenamiento con redes neuronales
- Author
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Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores, Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, Linares Barranco, Alejandro, Universidad de Sevilla. Departamento de Arquitectura y Tecnología de Computadores, Universidad de Sevilla. TEP108: Robótica y Tecnología de Computadores, Pérez-Rodríguez, Alfonso, Domínguez Morales, Manuel Jesús, Jiménez Fernández, Ángel Francisco, and Linares Barranco, Alejandro
- Abstract
El proyecto consiste en la creación de un brazo robótico controlado remotamente a través de un brazalete desarrollado por Thalmic Labs, el cual es capaz de leer los biopotenciales de los músculos residentes del muñón de los usuarios. Este proyecto, tiene como propósito la creación de una alternativa económica a las prótesis activas no invasivas que existen en la actualidad. Nuestra prótesis es capaz de realizar las mismas funciones, pero a un precio mucho más asequible. Para poder realizar todas las funciones que una articulación normal, el brazo cuenta con varios elementos: Cuerdas que simulan tendones y permiten el movimiento de los dedos, engranajes que permiten el giro de la muñeca y motores, los cuales son capaces de generar el movimiento en función de los datos extraídos del brazalete. El brazalete es el encargado de transmitir la información de la mano al brazo robótico a través de un módulo inalámbrico que lo conecta con el ordenador, donde la señal que extrae el brazalete pasa por un proceso de filtrado para quedarnos con la información que nos interesa y transmitirla mediante el puerto USB a un microcontrolador, el cual será el encargado de mover los motores según las señales que reciba. Para evitar errores en la medida de los sensores, la información recibida por el pc proveniente del brazalete pasa un proceso de entrenamiento mediante redes neuronales antes de ser enviada al brazo robótico., The project consists of the creation of a robotic arm controlled remotely through a brace developed by Thalmic Labs, which can read the biopotentials of the muscles of the limb of the users. This project aims to create an economic alternative to noninvasive active prostheses that exist today. Our prosthesis can perform the same functions but at a so much affordable price. To perform all the functions of a normal joint, the arm has several elements. Strings that simulate tendons and allow the movement of the fingers, gears that allow the rotation of the wrist and motors, which can generate movement based on the data extracted from the bracelet. The bracelet is responsible for transmitting information from the hand to the robotic arm through a wireless module that connects it with the computer, where the signal that extracts the bracelet goes through a filtering process to keep the information that interests us and Transmit it through the USB port to a microcontroller, which will be in charge of moving the engines according to the signals received. To avoid errors in the measurement of the sensors, the information received from the bracelet is trained in the computer using a Neural Network architecture before sending the information to the robotic arm.
- Published
- 2019
17. Estimates of natural predation and residual mortality for the Flemish Cap cod
- Author
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Pérez-Rodríguez, Alfonso and González-Costas, Fernando
- Subjects
Centro Oceanográfico de Vigo ,Pesquerías - Abstract
The current 3M cod stock assessment assumes that natural mortality is the same for all ages and constant over time. As part of the EU project SC03 “Support to a robust model assessment, benchmark and development of a management strategy evaluation for cod in nafo division 3M”, different approaches to set total natural mortality by age and year have been tested.One of these approaches is using the matrix of natural mortality at age estimated with the multispecies model GadCap. These values of mortality at age are the result of predation mortality (Mpred) and a residual mortality (Mresid). In this document different approaches to estimate the residual natural mortality are explored. An Mresid of 0.35 is finally decided, and it is used to re-optimize the GadCap model parameters. A final matrix of total natural mortality (Mpred + Mresid) was produced to be used in the 3M cod benchmark.
- Published
- 2018
18. Update of the Flemish Cap multispecies model GadCap as part of the EU SC05 project: 'Multispecies Fisheries Assessment for NAFO'
- Author
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Pérez-Rodríguez, Alfonso and González-Troncoso, Diana
- Subjects
Sede Central IEO ,Pesquerías - Abstract
Multispecies modelling is an essential part of the NAFO roadmap for an Ecosystem Approach to Fisheries management, connecting the “Ecosystem” tier with the “Single species” tier. Aware of the importance of continue moving forward in this direction, the EU DG-MARE launched in 2017 the project SC05 “Multispecies Fisheries Assessment for NAFO” with the intention of identifying the potential alternatives to implement an multispecies approach in NAFO, with the Flemish Cap as a case study. As part of this project the multispecies model GadCap, considering the Flemish Cap cod, redfish and shrimp interdependent dynamics over the period 1988-2012, has been improved and extended until 2016. This working document describes the improvements in relation to the version delivered in 2016, and present diagnostic figures to assess the fit of the model to the different databases. Finally, model estimates of population abundance, biomass as well as the predation and fishing mortality are presented
- Published
- 2018
19. Status and trends of the fish community in the Flemish Cap (NAFO Div. 3M) bioregion
- Author
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Koen-Alonso, Mariano, Pérez-Rodríguez, Alfonso, Cuff, A., González-Troncoso, Diana, Sacau-Cuadrado, María del Mar, Koen-Alonso, Mariano, Pérez-Rodríguez, Alfonso, Cuff, A., González-Troncoso, Diana, and Sacau-Cuadrado, María del Mar
- Abstract
This report summarizes fish community trends for the Flemish Cap (NAFO Div. 3M) based on European Union summer trawl research vessel surveys between 1988 and 2018. Species were classified into eight functional groups and trends were described using biomass indices, biomass and abundance anomalies, and fish size (Biomass/Abundance Ratio) anomalies. In 2003, a replacement of the research vessel allowed extending the depth coverage of the survey from 700m to 1400m. The vessel change had an impact on survey catchability, so to account for it conversion factors were applied. Considering the change in depth coverage, trends were examined for 1988-2018 with data up to 700m, and for 2004-2018 with data up to 1400m. Fish community trends were similar between the two datasets, but the analyses including deeper waters showed a comparatively higher levels of benthivores, reflecting the changes in community structure with depth. Generally speaking, trends in average fish size as tracked by the Biomass/Abundance Ratio appeared driven by recruitment, where general declines in abundance and absences of good recruitments got reflected in increases of this ratio. Biomass of plankpiscivores (mostly Sebastes sp.) experienced a sharp increase in the early 2000s but then returned to levels comparable to the 1990s. Piscivores biomass showed a strong decline in the early 1990s due to the collapse of cod but has since shown signs of recovery. Shellfish, driven by northern shrimp, saw a sustained increase in biomass from the early 1990s until 2002, when started a decline that has persisted until 2018. The biomass of large benthivores decline in the late 1990s and remains low to this date.
- Published
- 2018
20. Dynamic of the Flemish Cap commercial stocks: use of a gadget multispecies model to determine the relevance and synergies between predation, recruitment and fishing
- Author
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Pérez-Rodríguez, Alfonso, Howell, D., Casas, M., Saborido-Rey, Fran, Ávila de Melo, A., Pérez-Rodríguez, Alfonso, Howell, D., Casas, M., Saborido-Rey, Fran, and Ávila de Melo, A.
- Abstract
Multispecies modeling is being increasingly accepted in stock assessment, especially in the context of an ecosystem approach to fisheries management (EAF). To achieve a future implementation of an EAF in the Flemish Cap, we present a multispecies model developed in Gadget, which covers the main commercial stocks over the period 1988–2012: cod (Gadus morhua), redfish (Sebastes spp.), and northern shrimp (Pandalus borealis). The model highlights the interdependent dynamic of these stocks and reveals strong interactions among recruitment, fishing, and predation (including cannibalism). These drivers have shown marked changes in their relative importance by species, age, and length over time, producing a transition from a traditional redfish- and cod-dominated system in the early 1990s to an intermediate shrimp and other fish species state by the late 1990s and in turn back to something close to the initial state by the late 2000s. The multispecies model developed in this paper shows that disregarding the species interactions would lead to serious underestimates of natural mortality and overestimations of the exploitable biomass and highlights the need to move beyond single-species management in this highly coupled ecosystem
- Published
- 2017
21. Comparison of demographic and direct methods to calculate probabilistic maturation reaction norms for Flemish Cap cod (Gadus morhua)
- Author
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Pérez-Rodríguez, Alfonso, Morgan, M. Joanne, and Saborido-Rey, Fran
- Subjects
life history evolution ,Reproduction ,Fisheries ,Phenotypic plasticity ,Original Articles ,adaptation ,Contemporary evolution ,Life history evolution ,phenotypic plasticity ,Probabilistic maturation reaction norms ,reproduction ,probabilistic maturation reaction norms ,fisheries ,Adaptation ,contemporary evolution - Abstract
8 páginas, 1 figura, 4 tablas, Age and length at maturation have declined in many fish populations and this has been hypothesized to be a genetic change caused by high fishing mortality. Probabilistic Maturation Reaction Norms (PMRNs) have been used as a tool to gain a better understanding of the possible genetic nature of these changes. The demographic and direct methods are two ways to calculate PMRNs. The data requirements are more often met for the demographic method than for the direct method which requires the identification of recruit spawners. However, the demographic method relies on more assumptions than the direct method, typically assuming equality of growth and mortality rates for immature and mature individuals within an age class. This study provides the first direct comparison of demographic and direct methods and shows that both methods produce comparable results. Differences between methods are hypothesized to be owed to possible differences in growth rate between mature and immature individuals in Flemish Cap cod.
- Published
- 2009
22. GadCap: A GADGET multispecies model for the Flemish Cap cod, redfish and shrimp.
- Author
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Pérez-Rodríguez, Alfonso, Howell, Daniel, Casas-Sánchez, José Miguel, Saborido-Rey, Francisco, Ávila-de-Melo, Antonio, González-Costas, Fernando, González-Troncoso, Diana, Pérez-Rodríguez, Alfonso, Howell, Daniel, Casas-Sánchez, José Miguel, Saborido-Rey, Francisco, Ávila-de-Melo, Antonio, González-Costas, Fernando, and González-Troncoso, Diana
- Abstract
Since late 1980s, the demersal community of Flemish Cap (NAFO area 3M) has experienced large variations (including the collapse) in the abundance and population structure of its main fishing resources: cod Gadus morhua, redfish Sebastes sp. and shrimp Pandalus borealis, with alternation in their dominant role in the ecosystem. GadCap is an EU project dealing with the development of a GADGET multispecies model for the Flemish Cap cod, redfish and shrimp, as part of the NAFO roadmap for the EAF. The effect of fishing, trophic interactions (including cannibalism) and water temperature in the dynamic of these three major fishing resources has been modeled. The results highlight the interdependent dynamic of these stocks, and reveals strong interactions between recruitment, fishing and predation (including cannibalism), with marked changes in their relative importance by species-age-length over time. The multispecies model shows that disregarding the species interactions would lead to serious underestimates of natural mortality, overestimations of the exploitable biomass, and highlights the need to move beyond single-species management in this highly coupled ecosystem. Preliminary estimates of total SSB and MSY, under different combinations of fishing mortality for all the three stocks, are also presented.
- Published
- 2016
23. An integrative study to the functioning of the Flemish Cap demersal community
- Author
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Pérez Rodríguez, Alfonso, Saborido-Rey, Fran, Koen-Alonso, Mariano, Koen Alonso, Mariano, and Gonzalez Castro, Bernardino
- Subjects
3105.10 Dinámica de las Poblaciones ,3105.08 Caza ,3105.07 Hábitos de Alimentación - Abstract
322 páginas, Across the period 1988-2008, the most abundant demersal species were cod, redfish, Northern shrimp and Greenland halibut accounting, as an average, for the 83.5% of total index of biomass every year. The analyses of biomass indices showed that the demersal community experienced notable variations across the period 1988-2008, due to changes in biomass of most of the 67 demersal populations studied. The Dynamic Factor Analysis (DFA) identified common trends in the trajectories of the 31 most abundant species in the demersal community. This suggests that the dynamics of the demersal species in the Flemish Cap are interconnected, and can be summarized by a few common patterns. The explanatory variables considered in the analyses appeared to be consistently important for the population biomass dynamic of these species. Water temperature, along with predation and fishing mortality were significant drivers of the Flemish Cap demersal community. The abundance of the less common demersal species was related with water temperature, with a transition in the species composition between cold and warm periods. Changes in the demersal community were globally registered in the diversity indexes and the Abundance Biomass Comparison (ABC) method, with notable variations in the relative location of biomass and abundance kdominance curves. The size based indicators showed marked declines in the size structure of the fish demersal community. Parallel to these changes in the demersal community, since 1993 important variations in feeding habits for the most important fish species were observed. First, strong variations in feeding habits with size were found in most fish species and hence, biological species were split into trophic species. These trophic species belonged to four different trophic guilds, the bentho-pelagic invertebrate feeders, the benthic invertebrate feeders, the pelagic invertebrate feeders and the piscivorous guild. Not only intra-guild but also inter-guild common trends were found. The dominant common trend was the increase on shrimp consumption for most trophic species, although in the piscivorous guild the consumption of redfish also presented an increasing trend. Parallel to this, intra-guild common trends toward the decline on consumption of their usual preys like ophiuroids, hyperiids and copepods were also detected. The variables accounting for common trends were mainly the abundance of prey species, the intra-guild competition and the oceanographic conditions. These common trends led to a higher overlap in feeding habits at the end of the study period. These results highlight the importance of trophic interactions in management decisions. The importance of key preys like Northern shrimp or juvenile redfish for other commercial species would need to be considered, when establishing fishing quotas, i.e. a multispecies approach to fisheries management instead of a monospecific approach. On the other hand, variations in feeding habits with fish length highlight the necessity of considering the demographic structure of both prey and predators when including trophic interactions in management decisions. Contemporaneously with changes in abundance of the Flemish Cap cod, changes in reproduction, growth and condition were detected. The high fishing mortality registered in the late 1980’s and early 1990’s contributed very importantly to the observed decrease in cod biomass. A genetic change toward earlier age and smaller size at maturation was found already in the 1980’s but especially in the early 1990’s cohorts. The decrease in Female Spawning Stock Biomass (FSSB) as consequence of the steep decline of the population, in conjunction with the rejuvenation of the reproductive stock, led to the decrease in the Total Egg Production (TEP). The high correlation of TEP with the recruitment during this period supports that the decrease in the SRP was largely responsible of the recruitment failures since mid 1990’s. However, the low temperatures recorded between 1989 and 1997 may have also lead to unfavorable conditions for cod recruitment. Cod fishing still remained in the Flemish Cap until 1996, which in conjunction with the absence of good recruitments, was the final blow contributing to the collapse. Since then density-dependent processes led to an increase in condition and growth, favoring earlier maturation by phenotypic plasticity and a growing FSSB. Although not studied in this thesis, it is probable that during this period the higher fish condition would led to an increased relative fecundity, producing an increase in the TEP. In the absence of fishing pressure, a higher SRP together with improved feeding conditions and higher temperatures probably favored the good recruitment events observed since 2005 and the recovery of the stock. With previous information, an extended food web model, including the 14 most important fish demersal species and their main preys was developed. A simplified conceptual model with cod, redfish, shrimp and Greenland halibut trophic interactions, including all the main drivers for population and community dynamic was also created. This included inner drivers like population structure and abundance, growth, condition and SRP, and external drivers like oceanographic conditions, species interactions (mainly predation but also competition) and fishing. With this theoretical model and the information from previous analysis a description of the ecological functioning of the Flemish Cap demersal community was developed. Fishing activity in conjunction with predation and oceanographic conditions were considered the main drivers inducing changes in the population structure of various species through mortality of larval, juvenile and adult stages. These changes produced variations in trophic interactions between species, and density-dependent processes affecting to growth and condition. All these factors strongly affected to the SRP of populations, which in turn affected to population structure. Under this scenario, fishing on cod and redfish under adverse environmental conditions for recruitment and low SRP produced an imbalance in the ecosystem that led to the increase of shrimp and Greenland halibut by the release of predation and competition respectively. Redfish stocks benefited from the low biomass of a capital piscivorous like cod, showing excellent recruitments in a period of favorable oceanographic conditions., The higher availability of shrimp and redfish preys produced an increase in the SRP of cod, which favored the recovery of the cod stock since 2005. The increasing predation of a growing cod stock produced the decline of the redfish stock since 2008, while the Northern shrimp stock decline was ascribed to the increasing predatory pressure from both cod and redfish in conjunction with a very high fishing pressure., This conceptual model developed to study the ecological functioning of the demersal community in Flemish Cap supposes an integrative approach that represents an important step away from the traditional view of single species management in Flemish Cap. This type of contributions constitutes major steps towards a new framework for fisheries management that incorporates theoretical background on the functioning of marine ecosystems. Achieving a sustainable fishery requires to focus on sustaining relationships between species, which includes fishery within complex evolving ecosystems. Fisheries management should maintain these relationships stable and robust within a resilient ecosystem.
- Published
- 2012
24. Food consumption of Flemish Cap cod Gadus morhua and redfish Sebastes sp. using generic bioenergetic models
- Author
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Pérez-Rodríguez, Alfonso and Saborido-Rey, Fran
- Abstract
15 páginas, 8 tablas, 13 figuras.-- SC WG on Ecosystem Approaches to Fisheries Management, The observed changes in the Flemish Cap demersal community since early 1990’s, with cod (Gadus morhua), redfish (Sebastes sp.) and shrimp (Pandalus borealis) stocks fluctuating in opposite directions, in addition to the existing trophic interactions between them, led to the issue of the magnitude of trophic interactions between these commercial species and its implication for population dynamic and fisheries management. In this work, total consumption by cod and redfish, as well as consumption on preys like redfish, shrimp and other species was estimated using a generic bioenergetic model. Changes in feeding habits, growth rates and variations in total predator biomass (cod and redfish) produced changes in consumption at a population level. Variations in the diet were related with changes in prey availability. In turn, redfish consumption by cod and shrimp consumption by cod and redfish seems to have been one of the reasons for variations in population dynamic of these two commercial prey species. Consumption on alternative prey like hyperiids, copepods and other fishes was important and in some cases it was related with the abundance of other main prey like shrimp and redfish. The importance of the abundance of alternative prey for management of commercially exploited prey species is evaluated, as well as the importance of qualitative and quantitative features of interactions between fishing and fish predation for population dynamic and management strategies.
- Published
- 2012
25. Analysis of common trends in the feeding habits of main demersal fish species on the Flemish Cap
- Author
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Pérez-Rodríguez, Alfonso, Koen-Alonso, Mariano, González, Carlos, and Saborido-Rey, Fran
- Abstract
30 páginas, 13 figuras, 10 tablas.-- SC WG on Ecosystem Approach to Fisheries Management, This study describes the diet of core fish species in the Flemish Cap marine community, with emphasis in the changes observed between 1993 and 2008. The analysis was based on trophic species rather than biological ones; trophic species were defined within biological species on the base of diet homogeneity and fish size. Trophic species were divided into four trophic guilds; these guilds were characterized as benthic-pelagic invertebrate, benthic invertebrate, pelagic invertebrate, piscivorous feeders. The multi-year diet matrix for all trophic species was summarized using non-metric multidimensional scaling (MDS). The resulting 3D MDS plot representing the distribution of predators over time in trophic space provided the basic information for the study of common patterns in the diet within the trophic guilds. The MDS scores for each one of the first 3 MDS axes were use to describe the trajectories of the trophic species over time. These trajectories were analyzes using Dynamic factor analysis (DFA); these analyses also included proxy variables representing intra-guild competition, prey availability, and environmental drivers. Results indicate that diet overlap among species has increased in recent years as a consequence of generalized trends towards increasing shrimp and redfish consumption, as well as decreasing consumption of Hyperiidea, Ophiuroidea, Copepoda and Ctenophora. These changes in feeding habits appear to be related to changes in ecosystem availability of prey as well as variations in bottom temperature., The work was funded by the Spanish Government through an I3P PhD Fellowship, and partially by Fisheries and Oceans Canada (DFO) through the Ecosystem Research Initiative of the Newfoundland and Labrador Region, the NEREUS program. We
- Published
- 2011
26. Age and size at maturity of Flemish Cap cod: where is the limit?
- Author
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Saborido-Rey, Fran, Domínguez-Petit, Rosario, Alonso-Fernández, Alexandre, and Pérez-Rodríguez, Alfonso
- Abstract
NAFO/PICES/ICES Symposium on Reproductive and Recruitment Processes of Exploited Marine Fish Stocks, 1-3 Octubre 2007, Lisboa, A decreasing trend in age and size at maturity in Flemish Cap cod has been well documented during many years since 1990 to 1999. Drastic changes in abundance were hypothesized as the major cause of these reductions. In spite of fishing ban in 1994 and the lack of commercial catches, it has not been observed signals of stock recovery and the size and age at maturity still decreases in the period 2000-2006. Age at maturity is estimated in 2006 in 2.5 years, compared with an age at maturity of 5 years in 1992. However in recent years size at maturity remains constant. In this paper we hypothesize on the existence of changes in reaction norms in cod that combined with denso-dependent shifts in latest years produced a lower stock reproductive potential, this together with observed changes in the ecosystem have prevented the stock recovery
- Published
- 2007
27. Determination of size at first sexual maturation in Flemish Cap cod (Gadus morhua) using the otolith-fish size allometric relation
- Author
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Pérez-Rodríguez, Alfonso
- Abstract
Poster.-- NAFO/PICES/ICES Symposium on Reproductive and Recruitment Processes of Exploited Marine Fish Stocks, 1-3 Octubre 2007, Lisboa, A progressive decrease in fish age and size at maturity has been observed in many fish stokc during the last decades, as in Flemish Cap cod (Gadus morhua). Fishing is considered as the main cause in this process because of its size selective capacity and changes that produce in the ecosystem structure. The earlier sexual maturation combined with the decrease in the abundance of older mature cod have induced a decline in the mean spawning stock age and size affecting to the stock reproductive potential through a decrease in fecundity, offspring quality and survivorship chances, affecting population status recovery.It is necessary to understand the reasons behind these changes to design better management strategies. To estimate size and age at maturity is, thus, critical in the fisheries management. However, the estimation of this parameters requires the collection of ovaries and it is not possible to estimate in historical data. Otoliths, however, have been collected in regular basis in most of the assessed fish stocks. In this paper a modified method of Bervian et al, 2006, is applied to Femish cap cod. The variable allometric coefficient introduced in the classical allometric equation, allowed us to detect key period in the fish life history, such as the maturation proccess.Female size at maturity in Flemish Cap cod obtained with this methodology for the 1990-1997 period was highly correlated (r= 0.93) with the L50 values determined histologically from ovaries collected during the same period. Apart from low cost and reasonably time consuming, this method, opposite to others, would permit us to know the evolution in size at maturation over the past years, by means of use the available otoliths in long time series. It could be very useful to clarify the responsible factors of the early maturation process, via compensatory response and/or genotypic frequency variation. In the future, this method could collaborate in a more effective management together with other methodologies such the reproductive potential concept in the ecosystem approach view
- Published
- 2007
28. An Assessment of Beaked Redfish (S. mentella and S. fasciatus) in NAFO Division 3M (With a Revised Approach to Quantify the Increase on Redfish Natural Mortality Determined by the Increase on Cod Predation Observed Over Recent Years, 2006-2012)
- Author
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Ávila-de-Melo, Antonio, Petit, Rosario, González-Troncoso, Diana, Alpoim, Ricardo, Saborido-Rey, Francisco, Pochtar, María, González-Costas, Fernando, Brites, Nuno, Pérez-Rodríguez, Alfonso, Ávila-de-Melo, Antonio, Petit, Rosario, González-Troncoso, Diana, Alpoim, Ricardo, Saborido-Rey, Francisco, Pochtar, María, González-Costas, Fernando, Brites, Nuno, and Pérez-Rodríguez, Alfonso
- Abstract
The 3M redfish assessment is focused on the beaked redfish, regarded as a management unit composed of two populations from two very similar species: the Flemish Cap S. mentella and S. fasciatus. The reason for this approach is the historical dominance of this group in the 3M redfish commercial catch until 2005. However a new golden redfish fishery (S. marinus) started on September 2005 on shallower depths of the Flemish Cap bank above 300m, and the Flemish Cap cod fishery reopened in 2010. These new realities implied a revision of catch estimates, in order to split recent redfish commercial catch and by-catch from the major fleets on Div. 3M into golden (S. marinus) and beaked (S. mentella and S. fasciatus) redfish catches. An Extended Survivor Analysis (Shepherd, 1999) was used with the same framework of previous assessments and with the tuning of the 1989-2012 EU survey. Survey results suggest that the beaked redfish stock has not been able to hold its growth and sustain an above average level, suffering instead a severe decline on the second half of the 2000’s. The most likely hypothesis to justify this unexpected downward trend on stock size is an increase in natural mortality by cod predation. From the sensitive analysis, natural mortality at 0.4 was applied on ages 4-6 through 2006-2010, and extended to ages 7 plus on 2009 and 2010. It has been kept constant through all ages on 2011 and 2012, but with an overall decline to 0.125.This is the highest possible level of natural mortality giving assessment results in line with the recent survey trends and at the same time with key diagnostics very close to the best ones, obtained with the return on 2011-2012 to the “standard” redfish natural mortality of 0.1. A 2013-2009 retrospective XSA was also carried out, being this assessment very much in line with their immediate predecessors (2012-2011). Above average year classes coupled with low fishing mortalities allowed a rapid growth of biomass and abundance since 200
- Published
- 2013
29. Changes in distribution of Greenland halibut in a varying environment
- Author
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Morgan, J.M., Garabana-Barro, Dolores, Rideout, R.M., Román-Marcote, Esther, Pérez-Rodríguez, Alfonso, Saborido-Rey, Francisco, Morgan, J.M., Garabana-Barro, Dolores, Rideout, R.M., Román-Marcote, Esther, Pérez-Rodríguez, Alfonso, and Saborido-Rey, Francisco
- Abstract
Fish are expected to respond to changing oceanographic temperature by altering their distribution. Off the coast of Newfoundland, Canada, there have been major changes in oceanographic temperature over the last several decades, with both record cold and record warm years being observed. Greenland halibut is an important flatfish species in the area, and is distributed in deep waters over a very wide geographic range. Thus, it might be buffered from temperature change in the overall area by reduced temperature variation at depth, and the diverse temperature conditions over its wide range. We examined intrapopulation variation in temperature and depth distribution, and the biological changes in relation to changes in available temperature. On the Flemish Cap, variation in available temperature was limited, and changes in depth were related to changing age composition and the differential depth distribution with age/size. In other areas there was a larger decline in available temperature, and associated with this, Greenland halibut moved to deeper waters and occupied warmer temperatures than they had previously. Concurrently, growth declined and condition increased. This study shows that shifts in distribution may not result in maintenance of homogeneous environmental conditions, and that resulting biological changes will be difficult to predict.
- Published
- 2013
30. Changes in distribution of Greenland halibut in a varying environment
- Author
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Ministerio de Ciencia e Innovación (España), Fisheries and Oceans Canada, Morgan, M. Joanne, Garabana, Dolores, Rideout, R. M., Román-Marcote, Esther, Pérez-Rodríguez, Alfonso, Saborido-Rey, Fran, Ministerio de Ciencia e Innovación (España), Fisheries and Oceans Canada, Morgan, M. Joanne, Garabana, Dolores, Rideout, R. M., Román-Marcote, Esther, Pérez-Rodríguez, Alfonso, and Saborido-Rey, Fran
- Abstract
Fish are expected to respond to changing oceanographic temperature by altering their distribution. Off the coast of Newfoundland, Canada, there have been major changes in oceanographic temperature over the last several decades, with both record cold and record warm years being observed. Greenland halibut is an important flatfish species in the area, and is distributed in deep waters over a very wide geographic range. Thus, it might be buffered from temperature change in the overall area by reduced temperature variation at depth, and the diverse temperature conditions over its wide range. We examined intrapopulation variation in temperature and depth distribution, and the biological changes in relation to changes in available temperature. On the Flemish Cap, variation in available temperature was limited, and changes in depth were related to changing age composition and the differential depth distribution with age/size. In other areas there was a larger decline in available temperature, and associated with this, Greenland halibut moved to deeper waters and occupied warmer temperatures than they had previously. Concurrently, growth declined and condition increased. This study shows that shifts in distribution may not result in maintenance of homogeneous environmental conditions, and that resulting biological changes will be difficult to predict.
- Published
- 2013
31. An integrative study to the functioning of the Flemish Cap demersal community
- Author
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Saborido-Rey, Fran, Koen-Alonso, Mariano, Pérez-Rodríguez, Alfonso, Saborido-Rey, Fran, Koen-Alonso, Mariano, and Pérez-Rodríguez, Alfonso
- Abstract
Across the period 1988-2008, the most abundant demersal species were cod, redfish, Northern shrimp and Greenland halibut accounting, as an average, for the 83.5% of total index of biomass every year. The analyses of biomass indices showed that the demersal community experienced notable variations across the period 1988-2008, due to changes in biomass of most of the 67 demersal populations studied. The Dynamic Factor Analysis (DFA) identified common trends in the trajectories of the 31 most abundant species in the demersal community. This suggests that the dynamics of the demersal species in the Flemish Cap are interconnected, and can be summarized by a few common patterns. The explanatory variables considered in the analyses appeared to be consistently important for the population biomass dynamic of these species. Water temperature, along with predation and fishing mortality were significant drivers of the Flemish Cap demersal community. The abundance of the less common demersal species was related with water temperature, with a transition in the species composition between cold and warm periods. Changes in the demersal community were globally registered in the diversity indexes and the Abundance Biomass Comparison (ABC) method, with notable variations in the relative location of biomass and abundance kdominance curves. The size based indicators showed marked declines in the size structure of the fish demersal community. Parallel to these changes in the demersal community, since 1993 important variations in feeding habits for the most important fish species were observed. First, strong variations in feeding habits with size were found in most fish species and hence, biological species were split into trophic species. These trophic species belonged to four different trophic guilds, the bentho-pelagic invertebrate feeders, the benthic invertebrate feeders, the pelagic invertebrate feeders and the piscivorous guild. Not only intra-guild but also inter-guild common tren, when establishing fishing quotas, i.e. a multispecies approach to fisheries management instead of a monospecific approach. On the other hand, variations in feeding habits with fish length highlight the necessity of considering the demographic structure of both prey and predators when including trophic interactions in management decisions. Contemporaneously with changes in abundance of the Flemish Cap cod, changes in reproduction, growth and condition were detected. The high fishing mortality registered in the late 1980’s and early 1990’s contributed very importantly to the observed decrease in cod biomass. A genetic change toward earlier age and smaller size at maturation was found already in the 1980’s but especially in the early 1990’s cohorts. The decrease in Female Spawning Stock Biomass (FSSB) as consequence of the steep decline of the population, in conjunction with the rejuvenation of the reproductive stock, led to the decrease in the Total Egg Production (TEP). The high correlation of TEP with the recruitment during this period supports that the decrease in the SRP was largely responsible of the recruitment failures since mid 1990’s. However, the low temperatures recorded between 1989 and 1997 may have also lead to unfavorable conditions for cod recruitment. Cod fishing still remained in the Flemish Cap until 1996, which in conjunction with the absence of good recruitments, was the final blow contributing to the collapse. Since then density-dependent processes led to an increase in condition and growth, favoring earlier maturation by phenotypic plasticity and a growing FSSB. Although not studied in this thesis, it is probable that during this period the higher fish condition would led to an increased relative fecundity, producing an increase in the TEP. In the absence of fishing pressure, a higher SRP together with improved feeding conditions and higher temperatures probably favored the good recruitment events observed since 2005 and the recovery of the stoc, The higher availability of shrimp and redfish preys produced an increase in the SRP of cod, which favored the recovery of the cod stock since 2005. The increasing predation of a growing cod stock produced the decline of the redfish stock since 2008, while the Northern shrimp stock decline was ascribed to the increasing predatory pressure from both cod and redfish in conjunction with a very high fishing pressure., This conceptual model developed to study the ecological functioning of the demersal community in Flemish Cap supposes an integrative approach that represents an important step away from the traditional view of single species management in Flemish Cap. This type of contributions constitutes major steps towards a new framework for fisheries management that incorporates theoretical background on the functioning of marine ecosystems. Achieving a sustainable fishery requires to focus on sustaining relationships between species, which includes fishery within complex evolving ecosystems. Fisheries management should maintain these relationships stable and robust within a resilient ecosystem.
- Published
- 2012
32. Estudio de la producción total de huevos del bacalao de Flemish Cap durante el período 1978-2008. Importancia de la actividad pesquera como agente causal de su variación
- Author
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Pérez-Rodríguez, Alfonso, Morgan, M. Joanne, Saborido-Rey, Fran, Pérez-Rodríguez, Alfonso, Morgan, M. Joanne, and Saborido-Rey, Fran
- Abstract
En los últimos tiempos han aparecido cada vez más estudios que cuestionan la proporcionalidad entre SSB y reclutamiento y se ha probado que en muchos casos no es una medida adecuada del potencial reproductivo del stock (SRP) (Marshall et all, 1998, Trippel, 1999). El aspecto cuantitativo del SRP, la producción total de huevos del stock (TEP), viene determinado por factores individuales como la fecundidad, así como por factores colectivos como la relación de sexos, la longitud media y la proporción de hembras maduras
- Published
- 2011
33. Does increased information about reproductive potential result in better prediction of recruitment?
- Author
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Morgan, M. Joanne, Pérez-Rodríguez, Alfonso, Saborido-Rey, Fran, Morgan, M. Joanne, Pérez-Rodríguez, Alfonso, and Saborido-Rey, Fran
- Abstract
The relationship between stock size and recruitment is an essential element in the understanding of the productivity of a population. However, predicting the number of recruits produced by a population has proven to be a difficult challenge. This may in part be a result of poor estimation of reproductive potential (RP). We determined if including increased information on reproductive biology in indices of RP results in better predictions of recruitment. We investigated some of the conditions that lead to better (or worse) recruitment prediction when more biologically complex indices of RP are used. Data from four populations in the Northwest Atlantic were examined: southern Grand Bank (NAFO Division 3NO) cod (Gadus morhua), Flemish Cap (NAFO Division 3M) cod, Newfoundland (NAFO Division 3LNO) American plaice (Hippoglossoides platessoides), and Greenland halibut (Reinhardtius hippoglossoides) (NAFO Subarea 2 + Division 3KLMNO). Stock–recruit models paired with complex indices of RP gave a better estimate of recruitment in slightly more than half of the tests conducted. When there were larger trends in the reproductive biology (maturity at age, sex ratio and egg production), more complex indices of RP were more likely to provide a better estimate of recruitment., The relationship between stock size and recruitment is an essential element in the understanding of the productivity of a population. However, predicting the number of recruits produced by a population has proven to be a difficult challenge. This may in part be a result of poor estimation of reproductive potential (RP). We determined if including increased information on reproductive biology in indices of RP results in better predictions of recruitment. We investigated some of the conditions that lead to better (or worse) recruitment prediction when more biologically complex indices of RP are used. Data from four populations in the Northwest Atlantic were examined: southern Grand Bank (NAFO Division 3NO) cod (Gadus morhua), Flemish Cap (NAFO Division 3M) cod, Newfoundland (NAFO Division 3LNO) American plaice (Hippoglossoides platessoides), and Greenland halibut (Reinhardtius hippoglossoides) (NAFO Subarea 2 + Division 3KLMNO). Stock–recruit models paired with complex indices of RP gave a better estimate of recruitment in slightly more than half of the tests conducted. When there were larger trends in the reproductive biology (maturity at age, sex ratio and egg production), more complex indices of RP were more likely to provide a better estimate of recruitment.
- Published
- 2011
34. Study of the relationship between total egg production, female spawning stock biomass, and recruitment of Flemish Cap cod (Gadus morhua)
- Author
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Pérez-Rodríguez, Alfonso, Morgan, M. Joanne, Rideout, R. M., Domínguez-Petit, Rosario, Saborido-Rey, Fran, Pérez-Rodríguez, Alfonso, Morgan, M. Joanne, Rideout, R. M., Domínguez-Petit, Rosario, and Saborido-Rey, Fran
- Abstract
In stock-recruitment relationships, spawning stock biomass (SSB) has traditionally been assumed to be equivalent to total egg production (TEP); however, in the last decade a number of studies have indicated the need to include more biological complexity in measures of reproductive potential and advocate the use of TEP instead of SSB. The relationship between fecundity and length is often used to estimate TEP. In that case, the equations used to estimate female spawning stock biomass (FSSB) and TEP only differ in the coefficients determining the fecundity and weight relationships with length. In the present paper, TEP and FSSB have been estimated for Flemish Cap cod (Gadus morhua) for the period from 1978 to 2008. Total egg production was calculated using six different fecundity-length relationships applied to the whole time series in each case. A greater difference between the allometric coefficient in the weight-length and fecundity-length relationships led to a lower correlation between FSSB and TEP. The TEP time series using higher fecundity allometric coefficients explained a greater proportion of recruitment variance. Despite this pattern, correlation between FSSB and TEP was always higher than 0.96. These results support the necessity of making annual estimates of potential fecundity and studying its relation not only to length but to other variables, such as fish condition, in order to really get an improvement of TEP over FSSB as a predictive variable in recruitment assessments.
- Published
- 2011
35. ORIGINAL ARTICLE: Comparison of demographic and direct methods to calculate probabilistic maturation reaction norms for Flemish Cap cod (Gadus morhua )
- Author
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Pérez-Rodríguez, Alfonso, primary, Morgan, Marie Joanne, additional, and Saborido-Rey, Fran, additional
- Published
- 2009
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