961 results on '"P, Groome"'
Search Results
2. The use of imaging studies and its association with surgical delays, costs and complications in patients with acute appendicitis: a population-based study in Ontario, Canada
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Patel, Sunil V., Ahlin, James, Brennan, Kelly, Nanji, Sulaiman, Merchant, Shaila J., Lajkosz, Katherine, Brogly, Susan B., and Groome, Patti A.
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- 2024
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3. Factors associated with the melanoma diagnostic interval in Ontario, Canada: a population-based study
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Mavor, Meaghan E., Hanna, Timothy P., Asai, Yuka, Langley, Hugh, Look Hong, Nicole J., Wright, Frances C., Nguyen, Paul, and Groome, Patti A.
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- 2024
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- View/download PDF
4. Influence of Magnetic Moment on Single Atom Catalytic Activation Energy Barriers
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Groome, Chloe, Ngo, Huong, Li, Jie, Wang, Chen Santillan, Wu, Ruqian, and Ragan, Regina
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Inorganic Chemistry ,Chemical Sciences ,Physical Chemistry ,Affordable and Clean Energy ,Single atom catalyst ,Spin catalysis ,Density functional theory ,CO oxidation ,Modified Eley-Rideal pathway ,Nudged elastic band ,Bader charge analysis ,Earth-abundant transition metals ,Magnetic graphene defects ,Physical Chemistry (incl. Structural) ,Chemical Engineering ,Inorganic chemistry ,Physical chemistry - Abstract
Design of the molecular environment of single atom catalysts (SAC) is promising for achieving high catalytic activity without expensive and scarce platinum-group metals (PGM). We utilize a first principles approach to examine how the spin state of the SAC and reactants can affect catalytic energy barriers of V, Fe, Mo, and Ta on two different graphene defects with differing magnetic moments. Spin polarized projected density of states and climbing image nudged elastic band calculations demonstrate relatively lower activation energy barriers for systems with higher spin state asymmetry near the Fermi energy; CO oxidation on Ta and V SAC have decreases in activation barrier energies of 27% and 44%, respectively. Graphic Abstract: [Figure not available: see fulltext.].
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- 2022
5. Social Connectedness in a Locked-Down World: A Phenomenological Study of Older Adults during the COVID-19 Pandemic
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Amy Beardmore, Penny Beynon, Christine Crabbe, Jan Fullforth, Jeremy Groome, and Matthew Jones
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older people ,social connectedness ,isolation ,loneliness ,COVID-19 ,lockdowns ,Medicine - Abstract
Background: Whilst qualitative research has previously been conducted on older people’s personal resilience and wellbeing during COVID-19, there are fewer empirical studies on the impact it had on social connectedness for this age group. In this paper we seek to examine older people’s social connectedness to others during the pandemic, their personal experiences of seeking out those connections, and whether there are any identifiable pre-existing factors that enabled them to minimise the impact of enforced isolation. Methods: Using a phenomenological methodology, we conducted in-depth interviews with 13 older people between March and May 2021. These interviews explored the participant’s lived experiences of staying socially connected to others during the enforced lockdowns and various restrictions. Results: Our findings reveal strong themes of personal resilience, sense of coherence and other protective factors, but also highlight the benefits of establishing connections to friends, family, organised groups and community prior to the pandemic. Conclusion: Older people’s ability to stay socially connected is influenced by personal resilience and a positive mindset; pre-existing social ties to others and maintaining a personal sense of coherence and a sense of belonging to people or places. Our findings shed light on the importance of informal social interactions, what it means to feel lonely in older age and indicate that for some the pandemic restrictions may even have offered a welcome space in which to process significant life events.
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- 2023
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6. Designing Experiments: Student Learning Experience and Behaviour in Undergraduate Physics Laboratories
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Cai, Bei, Mainhood, Lindsay A., Groome, Ryan, Laverty, Corinne, and McLean, Alastair
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Physics - Physics Education - Abstract
We investigated physics students' learning experience and behaviour in a second-year laboratory by analyzing transcribed audio recordings of laboratory sessions. One student group was given both a problem and procedure and asked to analyze and explain their results. Another was provided with only the problem and asked to design and execute the experiment, interpret the data, and draw conclusions. These two approaches involved different levels of student inquiry and they have been described as guided and open inquiry respectively. The latter gave students more opportunities to practice "designing experiments," one of the six major learning outcomes in the recommendations for the undergraduate physics laboratory curriculum by the American Association of Physics Teachers (AAPT). Qualitative analysis was performed of the audio transcripts to identify emergent themes and it was augmented by quantitative analysis for a richer understanding of students' experiences. An important finding is that significant improvements can be made to undergraduate laboratories impacting both student learning experience and behaviour by increasing the level of inquiry in laboratory experiments. This is most easily achieved by requiring students to design their own experimental procedures., Comment: 16 pages and 2 figures. Paper is being reviewed by Physical Review Physics Education Research
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- 2020
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7. Mapping Molecular Adsorption Configurations with <5 nm Spatial Resolution through Ambient Tip-Enhanced Raman Imaging
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Gabel, Matthew, O’Callahan, Brian T, Groome, Chloe, Wang, Chih-Feng, Ragan, Regina, Gu, Yi, and El-Khoury, Patrick Z
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Chemical Sciences ,Physical Sciences ,Chemical sciences ,Physical sciences - Abstract
We interrogate para-mercaptobenzoic acid (MBA) molecules chemisorbed onto plasmonic silver nanocubes through tip-enhanced Raman (TER) spectral nanoimaging. Through a detailed examination of the spectra, aided by correlation analysis and density functional theory calculations, we find that MBA chemisorbs onto the plasmonic particles with at least two distinct configurations: S- and CO2-bound. High spatial resolution TER mapping allows us to distinguish between the distinct adsorption geometries with a pixel-limited (
- Published
- 2021
8. Deep Learning Analysis of Vibrational Spectra of Bacterial Lysate for Rapid Antimicrobial Susceptibility Testing
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Thrift, William John, Ronaghi, Sasha, Samad, Muntaha, Wei, Hong, Nguyen, Dean Gia, Cabuslay, Antony Superio, Groome, Chloe E, Santiago, Peter Joseph, Baldi, Pierre, Hochbaum, Allon I, and Ragan, Regina
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Biological Sciences ,Biomedical and Clinical Sciences ,Microbiology ,Information and Computing Sciences ,Medical Microbiology ,Machine Learning ,Biodefense ,Rare Diseases ,Bioengineering ,Infectious Diseases ,Antimicrobial Resistance ,Emerging Infectious Diseases ,Networking and Information Technology R&D (NITRD) ,Machine Learning and Artificial Intelligence ,Infection ,Anti-Bacterial Agents ,Bayes Theorem ,Cell Extracts ,Deep Learning ,Microbial Sensitivity Tests ,surface-enhanced Raman scattering ,machine learning ,deep neural networks ,variational autoencoders ,generative deep learning ,antimicrobial susceptibility testing ,antimicrobial resistance ,Nanoscience & Nanotechnology - Abstract
Rapid antimicrobial susceptibility testing (AST) is an integral tool to mitigate the unnecessary use of powerful and broad-spectrum antibiotics that leads to the proliferation of multi-drug-resistant bacteria. Using a sensor platform composed of surface-enhanced Raman scattering (SERS) sensors with control of nanogap chemistry and machine learning algorithms for analysis of complex spectral data, bacteria metabolic profiles post antibiotic exposure are correlated with susceptibility. Deep neural network models are able to discriminate the responses of Escherichia coli and Pseudomonas aeruginosa to antibiotics from untreated cells in SERS data in 10 min after antibiotic exposure with greater than 99% accuracy. Deep learning analysis is also able to differentiate responses from untreated cells with antibiotic dosages up to 10-fold lower than the minimum inhibitory concentration observed in conventional growth assays. In addition, analysis of SERS data using a generative model, a variational autoencoder, identifies spectral features in the P. aeruginosa lysate data associated with antibiotic efficacy. From this insight, a combinatorial dataset of metabolites is selected to extend the latent space of the variational autoencoder. This culture-free dataset dramatically improves classification accuracy to select effective antibiotic treatment in 30 min. Unsupervised Bayesian Gaussian mixture analysis achieves 99.3% accuracy in discriminating between susceptible versus resistant to antibiotic cultures in SERS using the extended latent space. Discriminative and generative models rapidly provide high classification accuracy with small sets of labeled data, which enormously reduces the amount of time needed to validate phenotypic AST with conventional growth assays. Thus, this work outlines a promising approach toward practical rapid AST.
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- 2020
9. A cohort study of post-COVID-19 condition across the Beta, Delta, and Omicron waves in South Africa: 6-month follow-up of hospitalized and nonhospitalized participants
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Waasila Jassat, Caroline Mudara, Caroline Vika, Richard Welch, Tracy Arendse, Murray Dryden, Lucille Blumberg, Natalie Mayet, Stefano Tempia, Arifa Parker, Jeremy Nel, Rubeshan Perumal, Michelle J. Groome, Francesca Conradie, Norbert Ndjeka, Louise Sigfrid, Laura Merson, and Cheryl Cohen
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Long COVID ,Post-COVID-19 condition ,Risk factors ,Variants ,Omicron ,Infectious and parasitic diseases ,RC109-216 - Abstract
ABSTRACT: Objectives: The study aimed to describe the prevalence of and risk factors for post-COVID-19 condition (PCC). Methods: This was a prospective, longitudinal observational cohort study. Hospitalized and nonhospitalized adults were randomly selected to undergo telephone assessment at 1, 3, and 6 months. Participants were assessed using a standardized questionnaire for the evaluation of symptoms and health-related quality of life. We used negative binomial regression models to determine factors associated with the presence of ≥1 symptoms at 6 months. Results: A total of 46.7% of hospitalized and 18.5% of nonhospitalized participants experienced ≥1 symptoms at 6 months (P ≤0.001). Among hospitalized people living with HIV, 40.4% had persistent symptoms compared with 47.1% among participants without HIV (P = 0.108). The risk factors for PCC included older age, female sex, non-Black race, presence of a comorbidity, greater number of acute COVID-19 symptoms, hospitalization/COVID-19 severity, and wave period (lower risk of persistent symptoms for the Omicron compared with the Beta wave). There were no associations between self-reported vaccination status with persistent symptoms. Conclusion: The study revealed a high prevalence of persistent symptoms among South African participants at 6 months but decreased risk for PCC among participants infected during the Omicron BA.1 wave. These findings have serious implications for countries with resource-constrained health care systems.
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- 2023
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10. Time to treatment of esophageal cancer in Ontario: A population-level cross-sectional studyCentral MessagePerspective
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Nader M. Hanna, MBBS, MSc, Paul Nguyen, PhD, Wiley Chung, MD, and Patti A. Groome, PhD
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esophageal cancer ,treatment interval ,epidemiology ,geographical variability ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Surgery ,RD1-811 - Abstract
Objective: Timely cancer treatment improves survival and anxiety for some sites. Patients with esophageal cancer require specific workup before treatment, which can prolong the time from diagnosis to treatment (treatment interval [TI]). The geographical variation of this interval remains uninvestigated in patients with esophageal cancer. Methods: This retrospective population-level study conducted in Ontario used linked administrative health care databases. Patients treated for esophageal cancer between 2013 and 2018 were included. The TI was time from diagnosis to treatment. Patients were assigned a geographical Local Health Integration Network on the basis of postal code. Covariates included patient, disease, and diagnosing physician characteristics. Quantile regression modeled TI length at the 50th and 90th percentile and identified associated factors. Results: Of 7509 patients, 78% were male and most were aged between 60 and 69 years. The 50th and 90th percentile TI was 36 (interquartile range, 22-55) and 77 days, respectively. The difference between the Local Health Integration Network with the longest and shortest TI at the 50th and 90th percentile was 18 and 25 days, respectively. Older age (P
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- 2022
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11. Diagnostic testing practices for diarrhoeal cases in South African public hospitals
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Siobhan L. Johnstone, Nicola A. Page, Michelle J. Groome, Nicolette M. du Plessis, and Juno Thomas
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Diarrhoea ,Diagnostics ,Aetiology ,Low resource ,Stool samples ,Surveillance ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Stool samples submitted for diagnostic testing represent a proportion of diarrhoeal cases seeking healthcare, and an even smaller proportion of diarrhoeal cases in the community. Despite this, surveillance relies heavily on these laboratory results. This study described diarrhoeal diagnostic practices and aetiological agents of diarrhoea in patients admitted to three South African public hospitals in order to understand biases in surveillance data, and inform guidelines, diagnostic and laboratory practices to improve clinical management. Methods A doctors’ survey was conducted to determine sample submission, diarrhoeal treatment and barriers to submitting samples for testing. Results for all samples submitted for routine diagnostics were obtained from the NHLS Central Data Warehouse. An enhanced surveillance study enrolled patients with acute diarrhoea at the same hospitals over the same period. Differences between routine culture results and molecular testing from the surveillance study were described. Results Stool samples were seldom submitted for diagnostic testing (median of 10% of admitted cases). Current diagnostic guidelines were not useful, hence most doctors (75.1%) relied on their own clinical judgement or judgement of a senior clinician. Although most doctors (90.3%) agreed that diagnostics were helpful for clinical management, they reported patients being unwilling to provide samples and long laboratory turnaround times. Routine diagnostic data represent cases with chronic diarrhoea and dysentery since doctors are most likely to submit specimens for these cases. Pathogen yield (number of pathogens detected for samples tested for specific pathogens) was significantly higher in the surveillance study, which used molecular methods, than through routine diagnostic services (73.3% versus 8.2%, p
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- 2022
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12. Clinical severity of SARS-CoV-2 Omicron BA.4 and BA.5 lineages compared to BA.1 and Delta in South Africa
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Nicole Wolter, Waasila Jassat, Sibongile Walaza, Richard Welch, Harry Moultrie, Michelle J. Groome, Daniel Gyamfi Amoako, Josie Everatt, Jinal N. Bhiman, Cathrine Scheepers, Naume Tebeila, Nicola Chiwandire, Mignon du Plessis, Nevashan Govender, Arshad Ismail, Allison Glass, Koleka Mlisana, Wendy Stevens, Florette K. Treurnicht, Kathleen Subramoney, Zinhle Makatini, Nei-yuan Hsiao, Raveen Parboosing, Jeannette Wadula, Hannah Hussey, Mary-Ann Davies, Andrew Boulle, Anne von Gottberg, and Cheryl Cohen
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Science - Abstract
South Africa experienced a resurgence in COVID-19 in 2022 driven by Omicron subvariants BA.4 and BA.5. Here, the authors investigate the severity of infections caused by these subvariants, and find no difference in the risk of severe outcomes when compared to Omicron BA.1, whilst all Omicron subvariants were less severe than Delta.
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- 2022
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13. Time to Surgery for Patients with Esophageal Cancer Undergoing Trimodal Therapy in Ontario: A Population-Based Cross-Sectional Study
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Nader M. Hanna, Paul Nguyen, Wiley Chung, and Patti A. Groome
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esophageal cancer ,time to surgery ,epidemiology ,geographical variability ,treatment interval ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Patients with resectable esophageal cancer are recommended to undergo chemoradiotherapy before esophagectomy. A longer time to surgery (TTS) and/or time to consultation (TTC) may be associated with inferior cancer-related outcomes and heightened anxiety. Thoracic cancer surgery centers (TCSCs) oversee esophageal cancer management, but differences in TTC/TTS between centers have not yet been examined. This Ontario population-level study used linked administrative healthcare databases to investigate patients with esophageal cancer between 2013–2018, who underwent neoadjuvant chemoradiotherapy and then surgery. TTC and TTS were time from diagnosis to the first surgical consultation and then to surgery, respectively. Patients were assigned a TCSC based on the location of the surgery. Patient, disease, and diagnosing physician characteristics were investigated. Quantile regression was used to model TTS/TTC at the 50th and 90th percentiles and identify associated factors. The median TTS and TTC were 130 and 29 days, respectively. The adjusted differences between the TCSCs with the longest and shortest median TTS and TTC were 32 and 18 days, respectively. Increasing age was associated with a 16-day longer median TTS. Increasing material deprivation was associated with a 6-day longer median TTC. Significant geographic variability exists in TTS and TTC. Therefore, the investigation of TCSC characteristics is warranted. Shortening wait times may reduce patient anxiety and improve the control of esophageal cancer.
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- 2022
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14. A population-based validation study of the 8th edition UICC/AJCC TNM staging system for cutaneous melanoma
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Matthew C. Hynes, Paul Nguyen, Patti A. Groome, Yuka Asai, Meaghan E. Mavor, Tara D. Baetz, and Timothy P. Hanna
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Melanoma ,Skin neoplasms ,Neoplasm staging ,Ontario ,Survival analysis ,Prognosis ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background The 8th edition UICC/AJCC TNM8 (Tumour, Nodes, Metastasis) melanoma staging system introduced several modifications from the 7th edition (TNM7), resulting in changes in survival and subgroup composition. We set out to address the limited validation of TNM8 (stages I-IV) in large population-based datasets. Methods This retrospective cohort-study included 6,414 patients from the population-based Ontario Cancer Registry diagnosed with cutaneous melanoma between January 1, 2007 and December 31, 2012. Kaplan–Meier curves estimated the melanoma-specific survival (MSS) and overall survival (OS). Cox proportional hazard models were used to estimate adjusted hazard ratios for MSS and OS across stage groups. The Schemper-Henderson measure was used to assess the variance explained in the Cox regression. Results In our sample, 21.3% of patients were reclassified with TNM8 from TNM7; reclassifications in stage II were uncommon, and 44.1% of patients in stage III were reclassified to a higher subgroup. Minimal changes in MSS curves were observed between editions, but the stage IIB curve decreased and the stage IIIC curve increased. For TNM8, Stage I (n = 4,556), II (n = 1,206), III (n = 598), and IV (n = 54) had an estimated 5-year MSS of 98.4%, 82.5%, 66.4%, and 14.4%, respectively. Within stage III, IIIA 5-year MSS was 91.7% while stage IIID was 23.5%. HRs indicated that TNM8 more evenly separates subgroups once adjusted for patient- and disease-characteristics. The variance in MSS explained by TNM7 and TNM8 is 18.9% and 19.7%, respectively. Conclusion TNM8 performed well in our sample, with more even separation of stage subgroups and a modest improvement in predictive ability compared to TNM7.
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- 2022
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15. Regulatory T cells are paramount effectors in progesterone regulation of embryo implantation and fetal growth
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Ella S. Green, Lachlan M. Moldenhauer, Holly M. Groome, David J. Sharkey, Peck Y. Chin, Alison S. Care, Rebecca L. Robker, Shaun R. McColl, and Sarah A. Robertson
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Reproductive biology ,Medicine - Abstract
Progesterone (P4) is essential for embryo implantation, but the extent to which the pro-gestational effects of P4 depend on the maternal immune compartment is unknown. Here, we investigate whether regulatory T cells (Treg cells) act to mediate luteal phase P4 effects on uterine receptivity in mice. P4 antagonist RU486 administered to mice on days 1.5 and 3.5 postcoitum to model luteal phase P4 deficiency caused fewer CD4+Foxp3+ Treg cells and impaired Treg functional competence, along with dysfunctional uterine vascular remodeling and perturbed placental development in midgestation. These effects were linked with fetal loss and fetal growth restriction, accompanied by a Th1/CD8-skewed T cell profile. Adoptive transfer at implantation of Treg cells — but not conventional T cells — alleviated fetal loss and fetal growth restriction by mitigating adverse effects of reduced P4 signaling on uterine blood vessel remodeling and placental structure and by restoring maternal T cell imbalance. These findings demonstrate an essential role for Treg cells in mediating P4 effects at implantation and indicate that Treg cells are a sensitive and critical effector mechanism through which P4 drives uterine receptivity to support robust placental development and fetal growth.
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- 2023
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16. Student Behavior in Undergraduate Physics Laboratories: Designing Experiments
- Author
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Cai, Bei, Mainhood, Lindsay A., Groome, Ryan, Laverty, Corinne, and McLean, Alastair
- Abstract
We investigated physics students' behavior in a second-year laboratory by analyzing transcribed audio recordings of laboratory sessions. One student group was given both a problem and procedure and asked to analyze and explain their results. Another was provided with only the problem and asked to design and execute the experiment, interpret the data, and draw conclusions. These two approaches involved different levels of student inquiry and they have been described as guided and open inquiry, respectively. The latter gave students more opportunities to practice "designing experiments," one of the six major learning outcomes in the recommendations for the undergraduate physics laboratory curriculum by the American Association of Physics Teachers. Qualitative analysis was performed of the audio transcripts to identify emergent themes and it was augmented by quantitative analysis for a richer understanding of student behavior. An important finding is that significant improvements can be made to undergraduate laboratories impacting student behavior by increasing the level of inquiry in laboratory experiments. This is most easily achieved by requiring students to design their own experimental procedures.
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- 2021
- Full Text
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17. Predictors of Postoperative Liver Decompensation Events After Resection in Patients with Cirrhosis and Hepatocellular Carcinoma: A Population-Based Study
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Mir, Zuhaib M., Djerboua, Maya, Nanji, Sulaiman, Flemming, Jennifer A., and Groome, Patti A.
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- 2022
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18. Epidemiology and aetiology of moderate to severe diarrhoea in hospitalised patients ≥5 years old living with HIV in South Africa, 2018-2021: A case-control analysis.
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Siobhan L Johnstone, Linda Erasmus, Juno Thomas, Michelle J Groome, Nicolette M du Plessis, Theunis Avenant, Maryke de Villiers, and Nicola A Page
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Public aspects of medicine ,RA1-1270 - Abstract
Diarrhoea is a recognised complication of HIV-infection, yet there are limited local aetiological data in this high-risk group. These data are important for informing public health interventions and updating diagnostic and treatment guidelines. This study aimed to determine the pathogenic causes of diarrhoeal admissions in people living with HIV (PLHIV) compared to hospital controls between July 2018 and November 2021. Admitted diarrhoeal cases (n = 243) and non-diarrhoeal hospital controls (n = 101) ≥5 years of age were enrolled at Kalafong, Mapulaneng and Matikwana hospitals. Stool specimens/rectal swabs were collected and pathogen screening was performed on multiple platforms. Differences in pathogen detections between cases and controls, stratified by HIV status, were investigated. The majority (n = 164, 67.5%) of enrolled diarrhoeal cases with known HIV status were HIV-infected. Pathogens could be detected in 66.3% (n = 228) of specimens, with significantly higher detection in cases compared to controls (72.8% versus 50.5%, p
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- 2023
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19. Chloride influence on the formation of lanthanum hexaboride: An in-situ diffraction study
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Mattox, TM, Groome, C, Doran, A, Beavers, CM, and Urban, JJ
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Macromolecular and Materials Chemistry ,Physical Chemistry (incl. Structural) ,Materials Engineering ,Applied Physics - Abstract
LaB6 has been a material of interest for decades due to its thermionic emission, plasmonic properties, and low work function, and researchers continue to discover new properties even now. In order to meet growing interest in customizing these properties, it is important to gain better control over the system and a better understanding of the fundamental mechanism of LaB6 crystal growth and formation. Traditional synthetic methods require very high temperatures, at which point crystallization happens too quickly to be readily studied. Our discovery that LaB6 may be made using lower temperatures has made it possible to slow down crystal formation enough for lattice growth to be observed. We report here an in situ diffraction study of the reaction between LaCl3 and NaBH4. In observing the evolution of the (1 1 1), (1 1 0), and (2 0 0) lattice planes of LaB6, we have discovered that the Cl of LaCl3 has a strong influence on crystal formation, and that excess Cl, temperature and heating rate may all be used as tools to control the LaB6 final product.
- Published
- 2018
20. Chloride influence on the formation of lanthanum hexaboride: An in-situ diffraction study
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Mattox, Tracy M, Groome, Chloe, Doran, Andrew, Beavers, Christine M, and Urban, Jeffrey J
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Inorganic Chemistry ,Chemical Sciences ,Macromolecular and Materials Chemistry ,Physical Chemistry (incl. Structural) ,Materials Engineering ,Applied Physics ,Macromolecular and materials chemistry ,Materials engineering - Abstract
LaB6 has been a material of interest for decades due to its thermionic emission, plasmonic properties, and low work function, and researchers continue to discover new properties even now. In order to meet growing interest in customizing these properties, it is important to gain better control over the system and a better understanding of the fundamental mechanism of LaB6 crystal growth and formation. Traditional synthetic methods require very high temperatures, at which point crystallization happens too quickly to be readily studied. Our discovery that LaB6 may be made using lower temperatures has made it possible to slow down crystal formation enough for lattice growth to be observed. We report here an in situ diffraction study of the reaction between LaCl3 and NaBH4. In observing the evolution of the (1 1 1), (1 1 0), and (2 0 0) lattice planes of LaB6, we have discovered that the Cl of LaCl3 has a strong influence on crystal formation, and that excess Cl, temperature and heating rate may all be used as tools to control the LaB6 final product.
- Published
- 2018
21. A population-based validation study of the 8th edition UICC/AJCC TNM staging system for cutaneous melanoma
- Author
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Hynes, Matthew C., Nguyen, Paul, Groome, Patti A., Asai, Yuka, Mavor, Meaghan E., Baetz, Tara D., and Hanna, Timothy P.
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- 2022
- Full Text
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22. Clinical severity of SARS-CoV-2 Omicron BA.4 and BA.5 lineages compared to BA.1 and Delta in South Africa
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Wolter, Nicole, Jassat, Waasila, Walaza, Sibongile, Welch, Richard, Moultrie, Harry, Groome, Michelle J., Amoako, Daniel Gyamfi, Everatt, Josie, Bhiman, Jinal N., Scheepers, Cathrine, Tebeila, Naume, Chiwandire, Nicola, du Plessis, Mignon, Govender, Nevashan, Ismail, Arshad, Glass, Allison, Mlisana, Koleka, Stevens, Wendy, Treurnicht, Florette K., Subramoney, Kathleen, Makatini, Zinhle, Hsiao, Nei-yuan, Parboosing, Raveen, Wadula, Jeannette, Hussey, Hannah, Davies, Mary-Ann, Boulle, Andrew, von Gottberg, Anne, and Cohen, Cheryl
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- 2022
- Full Text
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23. Diagnostic testing practices for diarrhoeal cases in South African public hospitals
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Johnstone, Siobhan L., Page, Nicola A., Groome, Michelle J., du Plessis, Nicolette M., and Thomas, Juno
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- 2022
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24. Illuminating Chemical Reactions on the Nanoscale with Density Functional Theory, Enhanced Raman and IR Spectroscopies
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Groome, Chloe Elizabeth
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Materials Science ,Physics ,Chemistry ,catalysis ,computational modeling ,IR spectroscopy ,light-matter interactions ,Raman spectroscopy ,sensing - Abstract
Self-assembly typically utilizes thermodynamic driving forces to organize building blocks ranging from atoms to nanoparticles into static assemblies. Self-assembled structures often exhibit unique properties such as lowering catalytic energy barriers or tuning light-matter interactions. This requires understanding how to design and fabricate surfaces at atomic and molecular length scales where localized forces such as magnetic or electric fields drive complex chemical behavior. The characterization of nanoscale chemical behavior necessary for complete understanding of these processes is a significant challenge. In terms of catalysis, high throughput density functional theory modeling of a range of earth abundant transition metal atoms (V, Fe, Mo, Ta) supported on two types of graphene surface defects (bare, N-doped) demonstrate relatively lower activation energy barriers for systems with higher spin states at frontier orbitals near the Fermi energy; CO oxidation on Ta and V SAC have decreases in activation barrier energies of 27% and 44%, respectively. Effective Raman and infrared (IR) modeling approaches have been developed to interpret the effects of charge transfer and electric fields on chemical bonding and molecular orientation in plasmonic nanogaps. Even non-plasmonic enhancement of electric fields on gold surfaces is shown to alter molecular orientation and selectively enhance resonance modes in vibrational force spectra, which correlates to IR spectroscopy. The insights provided by this work further elucidates nanoscale chemical reactions crucial for next generation catalytic design as well as fundamental understanding of dynamic chemical behavior during self-assembly processes.
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- 2023
25. Clinical presentation and management of childhood intussusception in South Africa
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Cox, Sharon, Withers, Aletha, Arnold, Marion, Chitnis, Milind, de Vos, Corné, Kirsten, Mari, le Grange, Susanna M., Loveland, Jerome, Machaea, Sello, Maharaj, Ashwini, Madhi, Shabir A., Tate, Jacqueline E., Parashar, Umesh D., and Groome, Michelle J.
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- 2021
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26. Association between Immunogenicity of a Monovalent Parenteral P2-VP8 Subunit Rotavirus Vaccine and Fecal Shedding of Rotavirus following Rotarix Challenge during a Randomized, Double-Blind, Placebo-Controlled Trial
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Tamika Fellows, Nicola Page, Alan Fix, Jorge Flores, Stanley Cryz, Monica McNeal, Miren Iturriza-Gomara, and Michelle J. Groome
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rotavirus vaccine ,immune response ,pediatric ,fecal shedding ,Microbiology ,QR1-502 - Abstract
A correlate of protection for rotavirus (RV) has not been consistently identified. Shedding of RV following an oral rotavirus vaccine (ORV) challenge has been investigated as a potential model to assess protection of parenteral RV vaccines. We previously showed that shedding of a challenge ORV dose was significantly reduced among recipients of a parenteral monovalent RV subunit vaccine (P2-VP8-P[8]) compared to placebo recipients. This secondary data analysis assessed the association between fecal shedding of RV, as determined by ELISA one week after receipt of a Rotarix challenge dose at 18 weeks of age, and serum RV-specific antibody responses, one and six months after vaccination with the third dose of the P2-VP8-P[8] vaccine or placebo. We did not find any association between serum RV-specific immune responses measured one month post-P2-VP8-P[8] vaccination and fecal shedding of RV post-challenge. At nine months of age, six months after the third P2-VP8-P[8] or placebo injection and having received three doses of Rotarix, infants shedding RV demonstrated higher immune responses than non-shedders, showing that RV shedding is reflective of vaccine response following ORV. Further evaluation is needed in a larger sample before fecal shedding of an ORV challenge can be used as a measure of field efficacy in RV vaccine trials.
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- 2023
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27. Toll-like receptor-4 null mutation causes fetal loss and fetal growth restriction associated with impaired maternal immune tolerance in mice
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Hon Y. Chan, Lachlan M. Moldenhauer, Holly M. Groome, John E. Schjenken, and Sarah A. Robertson
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Medicine ,Science - Abstract
Abstract Maternal immune adaptation to accommodate pregnancy depends on sufficient availability of regulatory T (Treg) cells to enable embryo implantation. Toll-like receptor 4 is implicated as a key upstream driver of a controlled inflammatory response, elicited by signals in male partner seminal fluid, to initiate expansion of the maternal Treg cell pool after mating. Here, we report that mice with null mutation in Tlr4 (Tlr4 −/− ) exhibit impaired reproductive outcomes after allogeneic mating, with reduced pregnancy rate, elevated mid-gestation fetal loss, and fetal growth restriction, compared to Tlr4 +/+ wild-type controls. To investigate the effects of TLR4 deficiency on early events of maternal immune adaptation, TLR4-regulated cytokines and immune regulatory microRNAs were measured in the uterus at 8 h post-mating by qPCR, and Treg cells in uterus-draining lymph nodes were evaluated by flow cytometry on day 3.5 post-coitum. Ptgs2 encoding prostaglandin-endoperoxide synthase 2, cytokines Csf2, Il6, Lif, and Tnf, chemokines Ccl2, Cxcl1, Cxcl2, and Cxcl10, and microRNAs miR-155, miR-146a, and miR-223 were induced by mating in wild-type mice, but not, or to a lesser extent, in Tlr4 −/− mice. CD4+ T cells were expanded after mating in Tlr4 +/+ but not Tlr4 −/− mice, with failure to expand peripheral CD25+FOXP3+ NRP1 − or thymic CD25+FOXP3+ NRP1+ Treg cell populations, and fewer Treg cells expressed Ki67 proliferation marker and suppressive function marker CTLA4. We conclude that TLR4 is an essential mediator of the inflammation-like response in the pre-implantation uterus that induces generation of Treg cells to support robust pregnancy tolerance and ensure optimal fetal growth and survival.
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- 2021
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28. Diarrhoeal diseases in Soweto, South Africa, 2020: a cross-sectional community survey
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Siobhan L. Johnstone, Nicola A. Page, Juno Thomas, Shabir A. Madhi, Portia Mutevedzi, Nellie Myburgh, Carlos Herrera, and Michelle J. Groome
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Diarrhoea ,Community ,Handwashing ,Adults ,Children ,ORS ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background In South Africa, there are limited data on the burden of diarrhoea at a community level, specifically in older children and adults. This community survey estimated rates of and factors associated with diarrhoea across all ages and determined the proportion of cases presenting to healthcare facilities. Methods Households were enrolled from an existing urban health and demographic surveillance site. A household representative was interviewed to determine associated factors and occurrence of diarrhoea in the household, for all household members, in the past 2 weeks (including symptoms and health seeking behaviour). Diarrhoeal rate of any severity was calculated for 15 years age groups. Factors associated with diarrhoea and health seeking behaviour were investigated using binomial logistic regression. Results Diarrhoeal rate among respondents (2.5 episodes/person-year (95% CI, 1.8–3.5)) was significantly higher than for other household members (1.0 episodes/person-year (95% CI, 0.8–1.4); IRR = 2.4 (95% CI, 1.5–3.7) p
- Published
- 2021
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29. Effects of Size and Structural Defects on the Vibrational Properties of Lanthanum Hexaboride Nanocrystals
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Groome, Chloe, Roh, Inwhan, Mattox, Tracy M, and Urban, Jeffrey J
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Engineering ,Chemical Sciences ,Nanotechnology ,Physical Chemistry ,Chemical Engineering ,Materials Engineering ,Macromolecular and materials chemistry ,Physical chemistry ,Chemical engineering - Abstract
Lanthanum hexaboride (LaB6) is notable for its thermionic emission and mechanical strength and is being explored for its potential applications in IR-absorbing photovoltaic cells and thermally insulating window coatings. Previous studies have not investigated how the properties of LaB6 change on the nanoscale. Despite interest in the tunable plasmonic properties of nanocrystalline LaB6, studies have been limited due to challenges in the synthesis of phase-pure, size-controlled, high-purity nanocrystals without high temperatures or pressures. Here, we report, for the first time, the ability to control particle size and boron content through reaction temperature and heating ramp rate, which allows the effects of size and defects on the vibrational modes of the nanocrystals to be studied independently. Understanding these effects is important to develop methods to fully control the properties of nanocrystalline LaB6, such as IR absorbance. In contrast to previous studies on stoichiometric LaB6 nanocrystals, we report here that boron content and lanthanum vacancies have a greater influence on their vibrational properties than their particle size.
- Published
- 2017
30. Editorial: Emerging perspectives in sodium channelopathies
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J. R. Groome, H. J. Ray, and M. Chahine
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channelopathies ,sodium channel ,computational modeling ,transgenic ,genotype to phenotype ,Therapeutics. Pharmacology ,RM1-950 - Published
- 2022
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31. Explaining regional variations in colon cancer survival in Ontario, Canada: a population-based retrospective cohort study
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Marlo Whitehead, Christopher M Booth, Timothy P Hanna, Patti A Groome, Michael Brundage, Colleen Webber, Erin Kennedy, Weidong Kong, and Yingwei Peng
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Medicine - Abstract
Objectives Regional variation in cancer survival is an important health system performance measurement. We evaluated if regional variation in colon cancer survival may be driven by differences in the patient population, their health and healthcare utilisation, and/or cancer care delivery.Design Population-based retrospective cohort study using routinely collected linked health administrative data.Setting Ontario, Canada.Participants Patients with colon cancer diagnosed between 1 January 2009 and 31 December 2012.Outcome Cancer-specific survival was compared across the province’s 14 health regions. Using accelerated failure time models, we assessed whether regional survival variations were mediated through differences in case mix, including age, sex, comorbidities, stage at diagnosis and colon subsite, potential marginalisation and/or prediagnosis healthcare.Results The study population included 16 895 patients with colon cancer. There was statistically significant regional variation in cancer-specific survival. Three regions had cancer-specific survival that was between 30% (95% CI 1.03 to 1.65) and 39% (95% CI 1.13 to 1.71) longer and one region had cancer-specific survival that was 26% shorter (95% CI 0.58 to 0.93) than the reference region. For three of these regions, case mix explained between 26% and 56% of the survival variation. Further adjustment for rurality explained 22% of the remaining survival variation in one region. Adjustment for continuity of primary care and the diagnostic interval length explained 10% and 11% of the remaining survival variation in two other regions. Socioeconomic marginalisation, recent immigration and colonoscopy history did not explain colon cancer survival variation.Conclusions Case mix accounted for much of the regional variation in colon cancer survival, indicating that efforts to monitor the quality of cancer care through survival metrics should consider case mix when reporting regional survival differences. Future work should repeat this approach in other settings and other cancer sites considering a broad range of potential mediators.
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- 2022
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32. Undiagnosed comorbidities among individuals hospitalised with COVID-19 in South African public hospitals
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W Jassat, C Mudara, C Vika, M Dryden, M Masha, T Arendse, MJ Groome, H Moultrie, F Ismail, L Mvusi, S Singh, B Sayed, A Parker, J Black, S Potgieter, C Cohen, and L Blumberg
- Subjects
Diabetes ,Covid-19 ,Obesity ,Medicine ,Medicine (General) ,R5-920 - Abstract
Background. Previous studies have reported comorbid disease, including hypertension, diabetes mellitus, chronic cardiac and renal disease, malignancy, HIV, tuberculosis (TB) and obesity, to be associated with COVID‑19 mortality. National demographic surveys have reported a high proportion of undiagnosed and untreated comorbid disease in South Africa (SA). Objectives. To determine the number of individuals with previously undiagnosed HIV, TB and non-communicable diseases (NCDs) among patients hospitalised with COVID‑19, and the level of medical control of these chronic diseases. Methods. We conducted a sentinel surveillance study to collect enhanced data on HIV, TB and NCDs among individuals with COVID‑19 admitted to 16 secondary-level public hospitals in six of the nine provinces of SA. Trained surveillance officers approached all patients who met the surveillance case definition for inclusion in the study, and consenting patients were enrolled. The data collection instrument included questions on past medical history to determine the self-reported presence of comorbidities. The results of clinical and laboratory testing introduced as part of routine clinical care for hospitalised COVID‑19 patients were collected for the study, to objectively determine the presence of hypertension, diabetes, HIV and TB and the levels of control of diabetes and HIV. Results. On self-reported history, the most prevalent comorbidities were hypertension (n=1 658; 51.5%), diabetes (n=855; 26.6%) and HIV (n=603; 18.7%). The prevalence of self-reported active TB was 3.1%, and that of previous TB 5.5%. There were 1 254 patients admitted with COVID‑19 (39.0%) who met the body mass index criteria for obesity. On clinical and laboratory testing, 87 patients were newly diagnosed with HIV, 29 with TB, 215 with diabetes and 40 with hypertension during their COVID‑19 admission. There were 151/521 patients living with HIV (29.0%) with a viral load >1 000 copies/mL and 309/570 (54.2%) with a CD4 count
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- 2022
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33. Clinical severity of COVID-19 in patients admitted to hospital during the omicron wave in South Africa: a retrospective observational study
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Waasila Jassat, FCPHM, Salim S Abdool Karim, ProfPhD, Caroline Mudara, MSc, Richard Welch, BSc, Lovelyn Ozougwu, MSc, Michelle J Groome, PhD, Nevashan Govender, MSc, Anne von Gottberg, ProfPhD, Nicole Wolter, PhD, Milani Wolmarans, BOT, Petro Rousseau, MPH, Lucille Blumberg, DScMed, and Cheryl Cohen, ProfPhD
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Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Up to the end of January, 2022, South Africa has had four recognisable COVID-19 pandemic waves, each predominantly dominated by one variant of concern: the ancestral strain with an Asp614Gly mutation during the first wave, the beta variant (B.1.351) during the second wave, the delta variant (B.1.617.2) during the third wave, and lastly, the omicron variant (B.1.1.529) during the fourth wave. We aimed to assess the clinical disease severity of patients admitted to hospital with SARS-CoV-2 infection during the omicron wave and compare the findings with those of the preceding three pandemic waves in South Africa. Methods: We defined the start and end of each pandemic wave as the crossing of the threshold of weekly incidence of 30 laboratory-confirmed SARS-CoV-2 cases per 100 000 population. Hospital admission data were collected through an active national COVID-19-specific surveillance programme. We compared disease severity across waves by post-imputation random effect multivariable logistic regression models. Severe disease was defined as one or more of the following: acute respiratory distress, receipt of supplemental oxygen or mechanical ventilation, admission to intensive care, or death. Findings: We analysed 335 219 laboratory-confirmed SARS-CoV-2 hospital admissions with a known outcome, constituting 10·4% of 3 216 179 cases recorded during the four waves. During the omicron wave, 52 038 (8·3%) of 629 617 cases were admitted to hospital, compared with 71 411 (12·9%) of 553 530 in the Asp614Gly wave, 91 843 (12·6%) of 726 772 in the beta wave, and 131 083 (10·0%) of 1 306 260 in the delta wave (p
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- 2022
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34. How to Build a Robot: Collaborating to Strengthen STEM Programming in a Citywide System
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Groome, Meghan and Rodríguez, Linda M.
- Abstract
You have to stick with it. It takes time, patience, trial and error, failure, and persistence. It is almost never perfect or finished, but, with a good team, you can build something that works. These are the lessons youth learn when building a robot, as many do in the out-of-school time (OST) programs supported by the initiative described in this article. Similarly, implementing high-quality, sustainable programming in science, technology, engineering, and mathematics (STEM) across the largest publicly funded OST system in the country took time, teamwork, and persistence. In this article, the authors describe how the New York City Department of Youth and Community Development (DYCD) and the New York Academy of Sciences collaborated to develop a replicable program model for increasing the capacity of OST organizations to provide STEM learning opportunities. The process of developing this model and the lessons they learned provide a roadmap for other OST systems looking to enhance program capacity.
- Published
- 2014
35. Self-assembly of N-heterocyclic carbenes on Au(111)
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Alex Inayeh, Ryan R. K. Groome, Ishwar Singh, Alex J. Veinot, Felipe Crasto de Lima, Roberto H. Miwa, Cathleen M. Crudden, and Alastair B. McLean
- Subjects
Science - Abstract
Although N-heterocyclic carbenes (NHCs) are a promising class of ligands for forming robust self-assembled monolayers on metals, many questions remain about their behavior on surfaces. Here, the authors address these fundamental questions—such as the factors controlling NHC orientation, mobility, and ability to self-assemble—through an in-depth examination of NHC overlayers on Au(111).
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- 2021
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36. Factors associated with waiting time to breast cancer diagnosis among symptomatic breast cancer patients: a population-based study from Ontario, Canada
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Webber, Colleen, Whitehead, Marlo, Eisen, Andrea, Holloway, Claire M. B., and Groome, Patti A.
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- 2021
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37. Corrigendum: The intersection of age, sex, race and socio-economic status in COVID-19 hospital admissions and deaths in South Africa
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Waasila Jassat, Lovelyn Ozougwu, Shehnaz Munshi, Caroline Mudara, Caroline Vika, Tracy Arendse, Maureen Masha, Richard Welch, Nevashan Govender, Joy Ebonwu, Michelle Groome, Andre Joseph, Shabir A. Madhi, Cheryl Cohen, and Lucille Blumberg
- Subjects
Science ,Science (General) ,Q1-390 ,Social Sciences ,Social sciences (General) ,H1-99 - Abstract
Original article: https://doi.org/10.17159/sajs.2022/13323 The following terminology was erroneously reported: “non-white race” should be “people of colour”, or “black African, coloured and people of Indian descent”. The error appears in the following instances: Page 1, abstract, line 1 and 14 Page 1, under Introduction, paragraph 2, line 6 Page 11, under ‘Higher risk of mortality among non-white patients’, column 1, sub-heading Page 11, under ‘Higher risk of mortality among non-white patients’, column 1, paragraph 1, lines 2, 5 and 9 Page 11, under ‘Higher risk of mortality among non-white patients’, column 2, paragraph 1, line 2 Page 12, under ‘Higher risk of mortality among non-white patients’, column 1, paragraph 3, line 10 Page 12, under ‘Socio-economic status’, column 1, paragraph 1, lines 1, 3, 6, 16 and 21 Page 12, under ‘Healthcare access’, column 2, paragraph 4, lines 3 and 13
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- 2022
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38. Regional variations and associations between colonoscopy resource availability and colonoscopy utilisation: a population-based descriptive study in Ontario, Canada
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Patti A Groome, Jennifer A Flemming, Mark Rosenberg, Richard Birtwhistle, and Colleen Webber
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Published
- 2022
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39. The intersection of age, sex, race and socio-economic status in COVID-19 hospital admissions and deaths in South Africa
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Waasila Jassat, Lovelyn Ozougwu, Shehnaz Munshi, Caroline Mudara, Caroline Vika, Tracy Arendse, Maureen Masha, Richard Welch, Nevashan Govender, Joy Ebonwu, Michelle Groome, Andre Joseph, Shabir A. Madhi, Cheryl Cohen, and Lucille Blumberg
- Subjects
COVID-19 ,hospitalisation ,mortality ,race ,age ,sex ,Science ,Science (General) ,Q1-390 ,Social Sciences ,Social sciences (General) ,H1-99 - Abstract
Older age, male sex, and non-white race have been reported to be risk factors for COVID-19 mortality. Few studies have explored how these intersecting factors contribute to COVID-19 outcomes. This study aimed to compare demographic characteristics and trends in SARS-CoV-2 admissions and the health care they received. Hospital admission data were collected through DATCOV, an active national COVID-19 surveillance programme. Descriptive analysis was used to compare admissions and deaths by age, sex, race, and health sector as a proxy for socio-economic status. COVID-19 mortality and healthcare utilisation were compared by race using random effect multivariable logistic regression models. On multivariable analysis, black African patients (adjusted OR [aOR] 1.3, 95% confidence interval [CI] 1.2, 1.3), coloured patients (aOR 1.2, 95% CI 1.1, 1.3), and patients of Indian descent (aOR 1.2, 95% CI 1.2, 1.3) had increased risk of in-hospital COVID-19 mortality compared to white patients; and admission in the public health sector (aOR 1.5, 95% CI 1.5, 1.6) was associated with increased risk of mortality compared to those in the private sector. There were higher percentages of COVID-19 hospitalised individuals treated in ICU, ventilated, and treated with supplemental oxygen in the private compared to the public sector. There were increased odds of non-white patients being treated in ICU or ventilated in the private sector, but decreased odds of black African patients being treated in ICU (aOR 0.5; 95% CI 0.4, 0.5) or ventilated (aOR 0.5; 95% CI 0.4, 0.6) compared to white patients in the public sector. These findings demonstrate the importance of collecting and analysing data on race and socio-economic status to ensure that disease control measures address the most vulnerable populations affected by COVID-19. Significance: • These findings demonstrate the importance of collecting data on socio-economic status and race alongside age and sex, to identify the populations most vulnerable to COVID-19. • This study allows a better understanding of the pre-existing inequalities that predispose some groups to poor disease outcomes and yet more limited access to health interventions. • Interventions adapted for the most vulnerable populations are likely to be more effective. • The national government must provide efficient and inclusive non-discriminatory health services, and urgently improve access to ICU, ventilation and oxygen in the public sector. • Transformation of the healthcare system is long overdue, including narrowing the gap in resources between the private and public sectors.
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- 2022
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40. Cancer staging in individuals with a severe psychiatric illness: a cross-sectional study using population-based cancer registry data
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Alyson L. Mahar, Paul Kurdyak, Timothy P. Hanna, Natalie G. Coburn, and Patti A. Groome
- Subjects
Mental disorders ,Neoplasms ,Stage at diagnosis, cancer registry, unknown stage ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background Advanced cancer stage at diagnosis may explain high cancer mortality among patients with a severe psychiatric illness (SPI). Studies to date investigating advanced stage cancer at diagnosis as a potential explanation for high cancer mortality in individuals with a history of mental illness have been inconclusive. We examined the relationship between a SPI history and unknown cancer stage at diagnosis in colorectal cancer (CRC) patients. Methods This was a population-based, cross-sectional study using linked administrative databases of CRC patients diagnosed between 01/04/2007 and 31/12/2012. Individuals who had a history of mental illness but did not meet the definition of a SPI were excluded. An SPI was measured in the 5 years prior to the cancer diagnosis and categorized as inpatient, outpatient or no SPI. Individuals with a best stage in Stage 0 to Stage IV were considered staged and absence of staging information was defined as unknown stage. The risk of unknown stage cancer was estimated using modified Poisson regression. Results The final study cohort included 24,507 CRC patients. 258 (1.1%) individuals experienced a history of inpatient SPI and 482 (2.0%) experienced outpatient SPI. After adjusting for confounders, CRC patients with an inpatient or outpatient history of SPI were at greater risk of having missing TNM stage at diagnosis, compared to patients with no history of a mental illness (RR 1.45 (95% CI: 1.14–1.85) and RR1.17 (95% CI 0.95–1.43), respectively). The results did not change when alternate practices to assign SPI history using administrative data were used. Conclusions Individuals with an SPI, especially those with a psychiatric admission, were more likely to have missing stage data compared to individuals without a history of a mental illness. Incomplete and low quality cancer staging data likely undermines the quality of cancer care following initial diagnosis. Understanding why patients with an SPI are missing this information is a critical first step to providing excellent care to this vulnerable population.
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- 2020
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41. Identifying gaps in hand hygiene practice to support tailored target audience messaging in Soweto: A cross-sectional community survey
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Siobhan L. Johnstone, Nicola A. Page, Michelle J. Groome, Shabir A. Madhi, Portia Mutevedzi, and Juno Thomas
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hand hygiene ,risk communication ,covid-19 ,diarrhoeal diseases ,community ,Infectious and parasitic diseases ,RC109-216 - Abstract
Effective risk communication is essential for outbreak mitigation, as recently highlighted during the coronavirus disease 2019 (COVID-19) pandemic. Hand hygiene is one of the proposed public health interventions to protect against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) acquisition and transmission along with social distancing, improved ventilation, environmental cleaning, and wearing of masks. Improving hand hygiene practices in the community requires an understanding of the socio-behavioural context. This cross-sectional community survey in Soweto identified gaps in hand hygiene, which can inform appropriate messaging at the community level. Only 42% of survey respondents practiced adequate hand hygiene. Tailored educational messaging should be targeted at young adults in particular, and the importance of soap for hand hygiene must be emphasised for all age groups. Risk communication should expand to focus on preventing multiple infectious diseases during and beyond the COVID-19 pandemic.
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- 2022
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42. Historical Perspective of the Characterization of Conotoxins Targeting Voltage-Gated Sodium Channels
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James R. Groome
- Subjects
conotoxin ,sodium channel ,voltage-gated ,pore blocker ,gating modifier ,Biology (General) ,QH301-705.5 - Abstract
Marine toxins have potent actions on diverse sodium ion channels regulated by transmembrane voltage (voltage-gated ion channels) or by neurotransmitters (nicotinic acetylcholine receptor channels). Studies of these toxins have focused on varied aspects of venom peptides ranging from evolutionary relationships of predator and prey, biological actions on excitable tissues, potential application as pharmacological intervention in disease therapy, and as part of multiple experimental approaches towards an understanding of the atomistic characterization of ion channel structure. This review examines the historical perspective of the study of conotoxin peptides active on sodium channels gated by transmembrane voltage, which has led to recent advances in ion channel research made possible with the exploitation of the diversity of these marine toxins.
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- 2023
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43. MicroRNA miR-155 is required for expansion of regulatory T cells to mediate robust pregnancy tolerance in mice
- Author
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Schjenken, John E., Moldenhauer, Lachlan M., Zhang, Bihong, Care, Alison S., Groome, Holly M., Chan, Hon-Yeung, Hope, Christopher M., Barry, Simon C., and Robertson, Sarah A.
- Published
- 2020
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44. Macrophages exert homeostatic actions in pregnancy to protect against preterm birth and fetal inflammatory injury
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Nardhy Gomez-Lopez, Valeria Garcia-Flores, Peck Yin Chin, Holly M. Groome, Melanie T. Bijland, Kerrilyn R. Diener, Roberto Romero, and Sarah A. Robertson
- Subjects
Reproductive biology ,Medicine - Abstract
Macrophages are commonly thought to contribute to the pathophysiology of preterm labor by amplifying inflammation — but a protective role has not previously been considered to our knowledge. We hypothesized that given their antiinflammatory capability in early pregnancy, macrophages exert essential roles in maintenance of late gestation and that insufficient macrophages may predispose individuals to spontaneous preterm labor and adverse neonatal outcomes. Here, we showed that women with spontaneous preterm birth had reduced CD209+CD206+ expression in alternatively activated CD45+CD14+ICAM3– macrophages and increased TNF expression in proinflammatory CD45+CD14+CD80+HLA-DR+ macrophages in the uterine decidua at the materno-fetal interface. In Cd11bDTR/DTR mice, depletion of maternal CD11b+ myeloid cells caused preterm birth, neonatal death, and postnatal growth impairment, accompanied by uterine cytokine and leukocyte changes indicative of a proinflammatory response, while adoptive transfer of WT macrophages prevented preterm birth and partially rescued neonatal loss. In a model of intra-amniotic inflammation–induced preterm birth, macrophages polarized in vitro to an M2 phenotype showed superior capacity over nonpolarized macrophages to reduce uterine and fetal inflammation, prevent preterm birth, and improve neonatal survival. We conclude that macrophages exert a critical homeostatic regulatory role in late gestation and are implicated as a determinant of susceptibility to spontaneous preterm birth and fetal inflammatory injury.
- Published
- 2021
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45. Self-assembly of N-heterocyclic carbenes on Au(111)
- Author
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Inayeh, Alex, Groome, Ryan R. K., Singh, Ishwar, Veinot, Alex J., de Lima, Felipe Crasto, Miwa, Roberto H., Crudden, Cathleen M., and McLean, Alastair B.
- Published
- 2021
- Full Text
- View/download PDF
46. Toll-like receptor-4 null mutation causes fetal loss and fetal growth restriction associated with impaired maternal immune tolerance in mice
- Author
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Chan, Hon Y., Moldenhauer, Lachlan M., Groome, Holly M., Schjenken, John E., and Robertson, Sarah A.
- Published
- 2021
- Full Text
- View/download PDF
47. Diarrhoeal diseases in Soweto, South Africa, 2020: a cross-sectional community survey
- Author
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Johnstone, Siobhan L., Page, Nicola A., Thomas, Juno, Madhi, Shabir A., Mutevedzi, Portia, Myburgh, Nellie, Herrera, Carlos, and Groome, Michelle J.
- Published
- 2021
- Full Text
- View/download PDF
48. Building a Science, Technology, Engineering, and Math Agenda
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National Governors' Association, Washington, DC., Toulmin, Charles N., and Groome, Meghan
- Abstract
The global economy has "flattened" the world in terms of skills and technology. A new workforce of problem-solvers, innovators, and inventors who are self-reliant and able to think logically is one of the critical foundations that drive innovative capacity in a state. The K-12 (kindergarten through grade 12) education system, with the support of postsecondary education, the business sector, foundations, and government, must ensure that: (1) all students graduate from high school with science, technology, engineering, and math (STEM) competencies; and (2) a greater number of students graduate from high school as potential professionals in STEM fields. In this document, it is recommended that governors adopt policy tools in three areas to build a comprehensive STEM policy agenda: (1) aligning rigorous and relevant K-12 STEM education requirements to the expectations (inputs) of postsecondary education and the workplace; (2) developing statewide capacity for improved K-12 STEM teaching and learning to implement that aligned STEM education and work system; and (3) supporting new models that focus on rigor and relevance to ensure that every student is STEM literate upon graduation from high school and a greater number of students move onto postsecondary education and training in STEM disciplines. (Contains 2 figures and 58 endnotes.)
- Published
- 2007
49. Assessing the full costs of floodplain buyouts
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Curran-Groome, William, Haygood, Hallee, Hino, Miyuki, BenDor, Todd K., and Salvesen, David
- Published
- 2021
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50. Changes in primary care provider utilization by phase of care for women diagnosed with breast cancer: a CanIMPACT longitudinal cohort study
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K. Decker, R. Moineddin, C. Kendell, R. Urquhart, N. Biswanger, P. Groome, M. L. McBride, M. Winget, M. Whitehead, E. Grunfeld, and for the Canadian Team to Improve Community-Based Cancer Care Along the Continuum (CanIMPACT)
- Subjects
Primary health care ,Breast neoplasms ,Clinical decision-making ,Medicine (General) ,R5-920 - Abstract
Abstract Background Primary care providers (PCPs) have always played an important role in cancer diagnosis. There is increasing awareness of the importance of their role during treatment and survivorship. We examined changes in PCP utilization from pre-diagnosis to survival for women diagnosed with breast cancer, factors associated with being a high user of primary care, and variation across four Canadian provinces. Methods The cohorts included women 18+ years of age diagnosed with stage I-III invasive breast cancer in years 2007–2012 in British Columbia (BC), Manitoba (MB), Ontario (ON), and Nova Scotia (NS) who had surgery plus adjuvant chemotherapy and were alive 30+ months after diagnosis (N = 19,589). We compared the rate of PCP visits in each province across phases of care (pre-diagnosis, diagnosis, treatment, and survival years 1 to 4). Results PCP use was greatest during treatment and decreased with each successive survival year in all provinces. The unadjusted difference in PCP use between treatment and pre-diagnosis was most pronounced in BC where PCP use was six times higher during treatment than pre-diagnosis. Factors associated with being a high user of primary care during treatment included comorbidity and being a high user of care pre-diagnosis in all provinces. These factors were also associated with being a higher user of care during diagnosis and survival. Conclusions Contrary to the traditional view that PCPs focus primarily on cancer prevention and early detection, we found that PCPs are involved in the care of women diagnosed with breast cancer across all phases of care.
- Published
- 2019
- Full Text
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