141 results on '"Oztürk P"'
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2. UÇUCU KÜL VE PERLİT ESASLI GEOPOLİMER HARÇLARDA ÇÖMLEK SIR ATIĞI İKAMESİNİN YÜKSEK SICAKLIK DAYANIKLILIĞI ÜZERİNDEKİ ETKİSİ
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Zahide Bayer Oztürk, Bilal Baran, and Serhat Çelikten
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geopolimer ,uçucu kül ,perlit ,çömlek sır atığı ,sıcaklık ,geopolymer ,fly ash ,perlite ,pottery glaze waste ,high temperature ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Bu çalışmada, perlit (PT) ve uçucu kül (UK) bazlı geopolimerlere çömlek sırı atığı (ÇSA) ikamesinin mekanik özellikler ve yüksek sıcaklık performansı üzerindeki etkisi araştırılmıştır. Sadece PT, sadece UK ve ağırlıkça %75 UK ve %25 PT içeriği ile üretilen geopolimer harçlara %10, 20 ve 30 oranlarında ÇSA ikame edilmiştir. Harçlar, sabit 10M NaOH içeriği ve 8 saat 100 ºC ısıl kür ile üretilmiştir. Üretilen harçların 7, 28 ve 90 günlük eğilme ve basınç dayanımları belirlenmiş ve 500 ºC, 750 ºC ve 1000 ºC sıcaklıklarındaki performansları değerlendirilmiştir. Deneyler sonucunda, ÇSA malzemesinin PT ve UK+PT içeren numunelere kütlece %20 oranına kadar ikame edilmesinin nihai basınç dayanımı açısından olumlu yönde etkileri olduğu, UK içeren numunelerde ise ÇSA ikamesinin nihai basınç dayanımı açısından olumsuz etkileri olduğu tespit edilmiştir. Nihai dayanımlarda en yüksek değerler, 34.4 ve 32.41 MPa basınç ve 6.46 ve 6.3 MPa eğilme dayanımları ile UK+PT+ÇSA içeren numunelerde sırasıyla %10 ve 20 ÇSA oranlarında elde edilmiştir. Eğilme ve basınç dayanımları açısından optimum ÇSA oranının %10-20 aralığında olduğu söylenebilir. UK malzemesine ÇSA malzemesinin ikamesi, kür yaşına göre dayanım gelişimlerini olumsuz etkilerken, PT ve UK+PT içeren numunelere ÇSA malzemesi ikamesi dayanım gelişimlerinde olumlu etkiler meydana getirmiştir. ÇSA malzemesi yüksek sıcaklık performansı açısından tüm gruplarda olumlu etki meydana getirmiştir. ÇSA malzemesinin karışımlarda kütlece ikame yüzdesi arttıkça, dayanım kayıpları azalmıştır. UK malzemesinin yerine %30 ÇSA malzemesinin ikame edildiği numunelerde 750 ºC’de %40’a varan dayanım artışı tespit edilmiştir.
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- 2024
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3. Relationship between lower extremity strength asymmetry and linear multidimensional running in female tennis players
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Cenab Turkeri, Bariscan Oztürk, Murat Koç, Hakan Engin, Eren Uluöz, Cem Yoksuler Yılmaz, Banu Nurdan Özsu, Lutfi Tolga Celik, Mehmet Emin Şeker, İsmail Çiçek, Caner Uzunca, İbrahim Bahçivan, and Ahmed Abdelmoeen Abbass
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Inter Limb Asymmetry ,Tennis ,Linear and Multidimensional Running ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
Background Tennis requires movement abilities in changing playing situations. This article investigates the relationship between lower extremity strength asymmetry ratio and linear and multidimensional running performances in female tennis players. Methods A total of 56 female tennis players, with a mean age of 15.44 ± 0.50 years, participated in the study—the research design involved three sessions at 48-hour intervals. In the first session, athletes performed dominant and non-dominant countermovement jump (CMJ) and board jump (BJ) tests. The second (sec) session included 10-meter (−m) and 30-m linear running performance tests, while the final session assessed multidimensional running performance with a change of direction (COD) test. The relationship between CMJ and BJ asymmetry ratios and linear and multidimensional running performances was analysed using the Pearson correlation coefficient. Bilateral asymmetry rates in linear and multidimensional running performance were determined through linear regression analysis. Results The dominant CMJ recorded 17.56 ± 3.47 cm, while BJ was 130.23 ± 21.76 cm, and the non-dominant CMJ measured 16.79 ± 4.51 cm with a BJ of 147.52 ± 30.97 cm. The athletes had a CMJ asymmetry rate of 12.67 ± 11.29% and a BJ asymmetry rate of 7.19 ± 5.28%. A relationship was seen between the CMJ asymmetry rate and 30-m running performance (r = 0.368, p
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- 2024
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4. Efficacy and safety of gene therapy with onasemnogene abeparvovec in children with spinal muscular atrophy in the D-A-CH-region: a population-based observational studyResearch in context
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Claudia Weiß, Lena-Luise Becker, Johannes Friese, Astrid Blaschek, Andreas Hahn, Sabine Illsinger, Oliver Schwartz, Günther Bernert, Maja von der Hagen, Ralf A. Husain, Klaus Goldhahn, Janbernd Kirschner, Astrid Pechmann, Marina Flotats-Bastardas, Gudrun Schreiber, Ulrike Schara, Barbara Plecko, Regina Trollmann, Veronka Horber, Ekkehard Wilichowski, Matthias Baumann, Andrea Klein, Astrid Eisenkölbl, Cornelia Köhler, Georg M. Stettner, Sebahattin Cirak, Oswald Hasselmann, Angela M. Kaindl, Sven F. Garbade, Jessika Johannsen, Andreas Ziegler, Petra Baum, Manuela Baumgartner, Astrid Bertsche, Markus Blankenburg, Jonas Denecke, Marcus Deschauer, Matthias Eckenweiler, Tobias Geis, Martin Groß, René Günther, Tim Hagenacker, Eckard Hamelmann, Christoph Kamm, Birgit Kauffmann, Jan Christoph Koch, Wolfgang Löscher, Albert Ludolph, Pascal Martin, Alexander Mensch, Gerd Meyer zu Hörste, Christoph Neuwirth, Susanne Petri, Manuel Pühringer, Imke Rathmann, Dorothee Schäfer, Mareike Schimmel, Bertold Schrank, Olivia Schreiber-Katz, Anette Schwerin-Nagel, Martin Smitka, Meike Steinbach, Elisabeth Steiner, Johannes Stoffels, Manuela Theophil, Raffi Topakian, Matthias Türk, Matthias Vorgerd, Maggie C. Walter, Markus Weiler, Gert Wiegand, Gilbert Wunderlich, Claudia Diana Wurster, Daniel Zeller, Moritz Metelmann, Fiona Zeiner, Veronika Pilshofer, Mika Rappold, Josefine Pauschek, Christof Reihle, Annette Karolin Homma, Paul Lingor, Bettina Henzi, Tabea Reinhardt, Dorothea Holzwarth, Wolfgang Wittmann, Stefan Kappel, Maren Freigang, Benjamin Stolte, Kyriakos Martakis, Georg Classen, Doris Roland-Schäfer, Daniela Steuernagel, Hans Hartmann, Sophie Fischer, Marieke Wermuth, Mohamad Tareq Muhandes, Anna Hotter, Zeljko Uzelac, Steffen Naegel, Sarah Wiethoff, Nathalie Braun, Bogdan Bjelica, Heike Kölbel, Daniela Angelova-Toshkina, Bernd Wilken, Alma Osmanovic, Barbara Fiedler, Maike Tomforde, Thomas Voelkl, Arpad von Moers, Petra Müller, Bettina Behring, Anne Güttsches, Peter Reilich, Wolfgang Wick, Corinna Stoltenburg, Simon Witzel, Julia Bellut, Georg Friedrich Hoffmann, Kathrin Mörtlbauer, Alexandra Ille, Michael Schroth, Joenna Driemeyer, Luisa Semmler, Cornelia Müller, Katharina Dörnbrack, Michael Zemlin, Stephanie Geitmann, Hanna Sophie Lapp, Svenja Brakemeier, Tascha Gehrke, Klearchos Ntemiris, Nadja Kaiser, Sabine Borowski, Barbara Ramadan, Ulf Hustedt, Tobias Baum, Ilka Schneider, Esra Akova-Oztürk, Katharina Vill, Zylfie Dibrani, Camilla Wohnrade, Adela Della-Marina, Lisa Jung, Timo Deba, Joachim Zobel, Jens Schallner, Christina Kraut, Peter Vollmann, Stephanie Schüssler, Melanie Roeder, Miriam Hiebeler, Nicole Berberich, Joanna Schneider, Brigitte Brauner, Stefan Kölker, Elke Pernegger, Magdalena Gosk-Tomek, Sarah Braun, Deike Weiss, Gerrit Machetanz, Thorsten Langer, Christina Saier, Sandra Baumann, Sabine Hettrich, Gabriel Dworschak, Katharina Müller-Kaempffer, Isabelle Dittes, Andreas Thimm, Lisa Quinten, Kristina Albers, Andrea Bevot, Christa Bretschneider, Johannes Dorst, Thomas Kendzierski, Iris Hannibal, Jasmin Bischofberger, Tilman Riesmeier, Andrea Gangfuß, Eva Johann to Settel, Michael Grässl, Susan Fiebig, Carmen Hollerauer, Lea Seeber, Ina Krahwinkler, Irene Lange, Federica Montagnese, Marcel Mann-Richter, Alexandra Wagner, Christine Leypold, Afshin Saffari, Elmecker Anna, Anna Wiesenhofer, Eva-Maria Wendel, Paula-Sophie Steffens, Sabine Wider, Adrian Tassoni, Andrea Dall, Franziska Busch, Daniela Zeisler, Maria Wessel, Jaqueline Lipka, Andrea Hackemer, Loreen Plugge, Eva Jansen, Erdmute Roth, Joachim Schuster, Anna Koelsch, Birgit Warken-Madelung, Michaela Schwippert, Britta Holtkamp, Katja Köbbing, Sander Claeys, Sandy Foerster, Simone Thiele, Heidi Rochau-Trumpp, Annette George, Moritz Niesert, Tanja Neimair, Katia Vettori, Julia Haverkamp, Jila Taherpour, Juliane Hug, Franziska Wenzel, Christina Bant, Ute Baur, Kathrin Bühner, Melina Schlag, Lena Ruß, Hanna Küpper, Anja Müller, Kurt Wollinsky, Therese Well, Antonia Leinert, Barbara Andres, Heymut Omran, Nicole Claus, Anna Hagenmeyer, Marion Schnurr, Vladimir Dukic, Albert Christian Ludolph, Sabine Specht, Verena Angermair, Anna Hüpper, Daniela Banholzer, Sabine Stein, Tim Kampowski, Marion Richmann, Sylke Nicolai, Omar Atta, Birgit Meßmer, Heike de Vries, Elisabeth Rotenfusser, Alma Oscmanovic, Isabelle Renger, Hélène Guillemot, Ilka Lehnert, Mike Grünwedel, Laura Grimm, Guido Stocker, Annegret Hoevel, Theresa Stadler, Michal Fischer, Sibylle Vogt, Axel Gebert, Susanne Goldbach, Hanns Lochmüller, Wolfgang Müller-Felber, Ulrike Schara-Schmidt, Kristina Probst-Schendzielorz, Annina Lang, Maren Nitzsche, Julie Hammer, Katharina Müller-Kaempfer, Corinna Wirner-Piotrowski, Lieske van der Stam, Anke Bongartz, Cornelia Enzmann, Joël Fluss, Elea Galiart, David Jacquier, Dominique Baumann Metzler, and Anne Tscherter
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Spinal muscular atrophy ,Gene addition therapy ,SMA ,Onasemnogene abeparvovec ,Gene therapy ,Zolgensma ,Public aspects of medicine ,RA1-1270 - Abstract
Summary: Background: Real-world data on gene addition therapy (GAT) with onasemnogene abeparvovec (OA), including all age groups and with or without symptoms of the disease before treatment are needed to provide families with evidence-based advice and realistic therapeutic goals. Aim of this study is therefore a population-based analysis of all patients with SMA treated with OA across Germany, Austria and Switzerland (D-A-CH). Methods: This observational study included individuals with Spinal Muscular Atrophy (SMA) treated with OA in 29 specialized neuromuscular centers in the D-A-CH-region. A standardized data set including WHO gross motor milestones, SMA validated motor assessments, need for nutritional and respiratory support, and adverse events was collected using the SMArtCARE registry and the Swiss-Reg-NMD. Outcome data were analyzed using a prespecified statistical analysis plan including potential predictors such as age at GAT, SMN2 copy number, past treatment, and symptom status. Findings: 343 individuals with SMA (46% male, 54% female) with a mean age at OA of 14.0 months (range 0–90, IQR 20.0 months) were included in the analysis. 79 (23%) patients were clinically presymptomatic at the time of treatment. 172 (50%) patients received SMN2 splice-modifying drugs prior to GAT (risdiplam: n = 16, nusinersen: n = 154, both: n = 2). Functional motor improvement correlated with lower age at GAT, with the best motor outcome in those younger than 6 weeks, carrying 3 SMN2 copies, and being clinically presymptomatic at time of treatment. The likelihood of requiring ventilation or nutritional support showed a significantly increase with older age at the time of GAT and remained stable thereafter. Pre-treatment had no effect on disease trajectories. Liver-related adverse events occurred significantly less frequently up to 8 months of age. All other adverse events showed an even distribution across all age and weight groups. Interpretation: Overall, motor, respiratory, and nutritional outcome were dependent on timing of GAT and initial symptom status. It was best in presymptomatic children treated within the first six weeks of life, but functional motor scores also increased significantly after treatment in all age groups up to 24 months. Additionally, OA was best tolerated when administered at a young age. Our study therefore highlights the need for SMA newborn screening and immediate treatment to achieve the best possible benefit-risk ratio. Funding: The SMArtCARE and Swiss-Reg-NMD registries are funded by different sources (see acknowledgements).
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- 2024
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5. BAZALT KESİM ATIKLARININ YER KAROSU MAT SIRLARDA KULLANIM POTANSİYELİNİN ARAŞTIRILMASI
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Elif Ubay, Yusuf Karaca, Ege Anıl Gürkan, Semra Kurama, and Zahide Bayer Oztürk
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bazalt ,seramik karo ,pigment ,atık değerlendirme. ,basalt ,ceramic tile ,waste assessment. ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
Seramik sırlarında, renk ve estetik etkileri artırmak amacıyla atık malzemelerin kullanımı önemli bir araştırma alanıdır. Bu atıkların seramik sırlarında renklendirici olarak potansiyel kullanımı, sürdürülebilirlik ve geri dönüşüm açısından büyük öneme sahiptir. Bu çalışmada, yer karosu mat sırlarında bazalt kesim atığı ilavesinin renk, faz ve mikroyapı üzerindeki etkisi araştırılmıştır. Bazalt kesim atığının kimyasal, faz ve tane boyut analizi ile karakterizasyonu yapılmış ve ağ. %1-9 oranında bazalt kesim atığının endüstriyel karo mat sırına eklenmesiyle, sırlar beyazdan açık kahve bej tonlarına dönüşmüş ve yüzeylerde benekli bir yapı oluşmuştur. Bazalt kesim atığının sır bünyesine ilavesinde direkt kullanımının yanı sıra 900-1100°C aralığında farklı sıcaklıklarda kalsinasyonu sonrasında kullanımı sonucu sır yapısında anortit, kristobalit ve diopsit fazları tespit edilmiştir. Standart mat sır ve ağ. %9 oranında atık (BKA) içeren mat sırlı yer karolarının mikroyapı analizlerinde (SEM/EDS) anortit kristalleri ve Ca, Fe içeriğinin arttığı tespit edilmiştir. Bu çalışma sonucunda, yer karosu mat sırlarının bej tonlarında bazalt atığıyla renklendirilmesinin, ekonomik açıdan avantaj sağlayabileceği ve atığın geri dönüşümüne katkıda bulunabileceği, sır üretiminde potansiyel bir renklendirici olarak kullanılabileceği sonucuna varılmıştır.
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- 2023
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6. The nature of chronic rejection after lung transplantation: a murine orthotopic lung transplant study
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Tobias Heigl, Janne Kaes, Celine Aelbrecht, Jef Serré, Yoshito Yamada, Vincent Geudens, Anke Van Herck, Arno Vanstapel, Annelore Sacreas, Sofie Ordies, Anna Frick, Berta Saez Gimenez, Jan Van Slambrouck, Hanne Beeckmans, Nilüfer A. Acet Oztürk, Michaela Orlitova, Annemie Vaneylen, Sandra Claes, Dominique Schols, Greetje Vande Velde, Jonas Schupp, Naftali Kaminski, Markus Boesch, Hannelie Korf, Schalk van der Merwe, Lieven Dupont, Jeroen Vanoirbeek, Laurent Godinas, Dirk E. Van Raemdonck, Wim Janssens, Ghislaine Gayan-Ramirez, Laurens J. Ceulemans, John E. McDonough, Erik K. Verbeken, Robin Vos, and Bart M. Vanaudenaerde
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lung transplantation ,chronic rejection ,imaging ,single-cell profiling ,mouse model ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionChronic rejection is a major complication post-transplantation. Within lung transplantation, chronic rejection was considered as airway centred. Chronic Lung Allograft Dysfunction (CLAD), defined to cover all late chronic complications, makes it more difficult to understand chronic rejection from an immunological perspective. This study investigated the true nature, timing and location of chronic rejection as a whole, within mouse lung transplantation.Methods40 mice underwent an orthotopic left lung transplantation, were sacrificed at day 70 and evaluated by histology and in vivo µCT. For timing and location of rejection, extra grafts were sacrificed at day 7, 35, 56 and investigated by ex vivo µCT or single cell RNA (scRNA) profiling.ResultsChronic rejection originated as innate inflammation around small arteries evolving toward adaptive organization with subsequent end-arterial fibrosis and obliterans. Subsequently, venous and pleural infiltration appeared, followed by airway related bronchiolar folding and rarely bronchiolitis obliterans was observed. Ex vivo µCT and scRNA profiling validated the time, location and sequence of events with endothelial destruction and activation as primary onset.ConclusionAgainst the current belief, chronic rejection in lung transplantation may start as an arterial response, followed by responses in venules, pleura, and, only in the late stage, bronchioles, as may be seen in some but not all patients with CLAD.
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- 2024
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7. Tailored anticoagulant treatment after a first venous thromboembolism: protocol of the Leiden Thrombosis Recurrence Risk Prevention (L-TRRiP) study - cohort-based randomised controlled trial
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Saskia le Cessie, Nick van Es, Michiel Coppens, Karina Meijer, Suzanne C Cannegieter, Saskia Middeldorp, Menno V Huisman, Frederikus A Klok, Geert-Jan Geersing, Annette W G van der Velden, Elske M van den Akker-van Marle, Albert T A Mairuhu, M Elske van den Akker-van Marle, Laura M Faber, Tjerk de Nijs, Remy H H Bemelmans, Coen van Guldener, Marcel A van de Ree, Marieke J.H. Wermer, Tessa Elling, Carolien van Netten, Milou A M Stals, Rick Roos, J Louise I Burggraaf-van Delft, Nienke van Rein, Jan-Willem K van den Berg, Coty Y Bruggeman, Marissa Cloos-van Balen, Matthijs Eefting, Yvonne Ende-Verhaar, Wouter K de Jong, Fleur Kleijwegt, Ted Koster, Cees Kroon, Saskia Kuipers, Jenneke Leentjens, Dieuwke Luijten, Ilse Schrover, Janneke Swart-Heikens, Yavuz Bilgin, Marleen Goddrie, Pieter Jobse, Suzanne Jong, Brianne Murphy, Carla Boekholt, Danick Werner, Laura Kratz, Marjolein Kremers, Monique Schilders, Gideon Hajer, Bas Langeveld, Saskia Teunisse-de Recht, Annemiek Bogerd, Ymke Broers, Stan Kolman, Sanjay Sankatsing, Lenneke van Tol, Edith Beishuizen, Shantie Bharatsingh, Edith Boersma, Annemarie van der Kraan-Donker, Sabine van Arnhem, Fransien Croon-de Boer, Ad Dees, J P (Hanneke) van Embden, Roxane Heller, Merel Hoogendorp, Roel Jonkhoff, Roel J J M van de Laar, Corry Leunis-de Ruiter, Patricia Scherpenisse-Klopstra, Tom L H Stellema, Kim Warink, Lizanne E van den Akker, Eleonora C Camilleri, Tess R C Huibregtse, Ingeborg de Jonge, Ruben Y Kok, Inger N Kunnekes, Lejla Mahic, Hinke C Nagtegaal, Petra J Noordijk, Hülya Oztürk, Alexia M van der Ploeg, Vibeke Schmidt, Anne-Marie Schuitemaker, Vera C Slootweg, Mark J R Smeets, Milou Thibaudier, Marco Dam, Swopkje de Jong, Hanneke van der Velde, Evertine Abbink, Carlinda Bresser, Simone Sissing, Soerajja Bhoelan, Èmese Heijkoop, Francien Huisman, Mark Lenssen, Anja B U Makelburg, Karen H Thedinga, Marja A J Voskuilen, Femke Yspeerd, Sandra Brookman, Titia Lamberts, Inge Paas, Janneke Swart Heikens, Janneke van den Brink, Aline van de Vendel, and Ellis S. van Etten
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Medicine - Abstract
Introduction Patients with a first venous thromboembolism (VTE) are at risk of recurrence. Recurrent VTE (rVTE) can be prevented by extended anticoagulant therapy, but this comes at the cost of an increased risk of bleeding. It is still uncertain whether patients with an intermediate recurrence risk or with a high recurrence and high bleeding risk will benefit from extended anticoagulant treatment, and whether a strategy where anticoagulant duration is tailored on the predicted risks of rVTE and bleeding can improve outcomes. The aim of the Leiden Thrombosis Recurrence Risk Prevention (L-TRRiP) study is to evaluate the outcomes of tailored duration of long-term anticoagulant treatment based on individualised assessment of rVTE and major bleeding risks.Methods and analysis The L-TRRiP study is a multicentre, open-label, cohort-based, randomised controlled trial, including patients with a first VTE. We classify the risk of rVTE and major bleeding using the L-TRRiP and VTE-BLEED scores, respectively. After 3 months of anticoagulant therapy, patients with a low rVTE risk will discontinue anticoagulant treatment, patients with a high rVTE and low bleeding risk will continue anticoagulant treatment, whereas all other patients will be randomised to continue or discontinue anticoagulant treatment. All patients will be followed up for at least 2 years. Inclusion will continue until the randomised group consists of 608 patients; we estimate to include 1600 patients in total. The primary outcome is the combined incidence of rVTE and major bleeding in the randomised group after 2 years of follow-up. Secondary outcomes include the incidence of rVTE and major bleeding, functional outcomes, quality of life and cost-effectiveness in all patients.Ethics and dissemination The protocol was approved by the Medical Research Ethics Committee Leiden-Den Haag-Delft. Results are expected in 2028 and will be disseminated through peer-reviewed journals and during (inter)national conferences.Trial registration number NCT06087952.
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- 2024
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8. Factors Predicting Early Major Adverse Events in the Intensive Care Unit After Successful Cardiac Surgery for Congenital Heart Disease in Full-Term Neonates
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Dilek Yavuzcan Oztürk, Erkut Oztürk, Hatice Dilek Ozcanoglu, Ibrahim Cansaran Tanıdır, Merih Çetinkaya, and Ali Can Hatemi
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Newborn Infant ,Risk Factors ,Cardiac Surgery ,Lactates ,Reoperation ,Area Under Curve ,Intensive Care Units ,Confidence Intervals ,Surgery ,RD1-811 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
ABSTRACT Objective: In this study, we aimed to evaluate the factors affecting major adverse event (MAE) development after full-term neonatal cardiac surgery. Methods: This study was conducted retrospectively on newborns who underwent congenital heart surgery between June 1, 2020, and June 1, 2022. MAE was defined as the presence of at least one of the following: cardiac arrest, unplanned reoperation, emergency chest opening, admission to the advanced life support system, and death. The role of blood lactate level, vasoactive inotropic score (VIS), and cerebral near-infrared spectroscopy (NIRS) changes in predicting MAE was investigated. Results: A total of 240 patients (50% male) were operated during the study period. The median age of patients was seven days (interquartile range 3-10 days). MAE was detected in 19.5% of the cases. Peak blood lactate levels >7 mmol/liter (area under the curve [AUC] 0.72, 95% confidence interval [CI] [0.62-0.82], P 10 was an independent risk factor (AUC 0.75, 95% CI [0.70-0.84], P 30%, high blood lactate levels, and VIS score within the 48 hours may help to predict the development of MAE in the postoperative period.
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- 2023
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9. Optimal PMU Placement for Türkiye 400 kV Interconnected Power System Observability with Dragonfly Algorithm
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Beytullah Bozali, Ali Oztürk, Salih Tosun, and Bülent Hoş
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dragonfly algorithm (DA) ,integer linear programming (ILP) ,optimal PMU placement (OPP) ,observability ,PMU ,Engineering (General). Civil engineering (General) ,TA1-2040 - Abstract
The Phasor Measurement Unit (PMU) is a modern measuring device built on the system for monitoring, controlling, and protecting power systems. Since the costs of PMU devices are very high, they must be placed in the system in optimum numbers and in a way that monitors the whole system. This study determined the locations and numbers of the optimal number of PMU devices that can monitor the whole system. Integer Linear Programming (ILP) and Binary Particle Swarm Optimization (BPSO) methods are proposed to solve the optimum PMU placement (OPP) problem. Then, the solution to the problem is carried out using Dragonfly Algorithm (DA), which is proposed as a new heuristic method. Solution methods were applied to the IEEE 14-Bus Test System and Türkiye 400 kV Interconnected Power System, and the results were compared. In addition, the results of the proposed methods were compared with the results of different studies in the literature. Thanks to the ILP, BPSO, and DA methods proposed in this study, it has been determined that power systems can be observed with fewer PMU devices. The DA method offers a great cost advantage as it is the method that provides a solution with 5 fewer PMU devices for the 400 kV Interconnected Power System in Türkiye.
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- 2023
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10. Genetically programmed retinoic acid deficiency during gastrulation phenocopies most known developmental defects due to acute prenatal alcohol exposure in FASD
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B. Petrelli, A. Oztürk, M. Pind, H. Ayele, A. Fainsod, and G. G. Hicks
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gastrulation ,retinoic acid ,vitamin A deficiency ,fetal alcohol spectrum disorder (FASD) ,prenatal alcohol exposure (PAE) ,craniofacial malformations ,Biology (General) ,QH301-705.5 - Abstract
Fetal Alcohol Spectrum Disorder (FASD) arises from maternal consumption of alcohol during pregnancy affecting 2%–5% of the Western population. In Xenopus laevis studies, we showed that alcohol exposure during early gastrulation reduces retinoic acid (RA) levels at this critical embryonic stage inducing craniofacial malformations associated with Fetal Alcohol Syndrome. A genetic mouse model that induces a transient RA deficiency in the node during gastrulation is described. These mice recapitulate the phenotypes characteristic of prenatal alcohol exposure (PAE) suggesting a molecular etiology for the craniofacial malformations seen in children with FASD. Gsc+/Cyp26A1 mouse embryos have a reduced RA domain and expression in the developing frontonasal prominence region and delayed HoxA1 and HoxB1 expression at E8.5. These embryos also show aberrant neurofilament expression during cranial nerve formation at E10.5 and have significant FASD sentinel-like craniofacial phenotypes at E18.5. Gsc+/Cyp26A1 mice develop severe maxillary malocclusions in adulthood. Phenocopying the PAE-induced developmental malformations with a genetic model inducing RA deficiency during early gastrulation strongly supports the alcohol/vitamin A competition model as a major molecular etiology for the neurodevelopmental defects and craniofacial malformations seen in children with FASD.
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- 2023
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11. MaxMin Linear Initialization for Fuzzy C-Means
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Oztürk, Aybükë, Lallich, Stéphane, Darmont, Jérôme, and Waksman, Sylvie Yona
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Computer Science - Machine Learning ,Computer Science - Databases ,Statistics - Machine Learning - Abstract
Clustering is an extensive research area in data science. The aim of clustering is to discover groups and to identify interesting patterns in datasets. Crisp (hard) clustering considers that each data point belongs to one and only one cluster. However, it is inadequate as some data points may belong to several clusters, as is the case in text categorization. Thus, we need more flexible clustering. Fuzzy clustering methods, where each data point can belong to several clusters, are an interesting alternative. Yet, seeding iterative fuzzy algorithms to achieve high quality clustering is an issue. In this paper, we propose a new linear and efficient initialization algorithm MaxMin Linear to deal with this problem. Then, we validate our theoretical results through extensive experiments on a variety of numerical real-world and artificial datasets. We also test several validity indices, including a new validity index that we propose, Transformed Standardized Fuzzy Difference (TSFD).
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- 2018
12. A Visual Quality Index for Fuzzy C-Means
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Oztürk, Aybükë, Lallich, Stéphane, and Darmont, Jérôme
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Computer Science - Learning ,Statistics - Machine Learning - Abstract
Cluster analysis is widely used in the areas of machine learning and data mining. Fuzzy clustering is a particular method that considers that a data point can belong to more than one cluster. Fuzzy clustering helps obtain flexible clusters, as needed in such applications as text categorization. The performance of a clustering algorithm critically depends on the number of clusters, and estimating the optimal number of clusters is a challenging task. Quality indices help estimate the optimal number of clusters. However, there is no quality index that can obtain an accurate number of clusters for different datasets. Thence, in this paper, we propose a new cluster quality index associated with a visual, graph-based solution that helps choose the optimal number of clusters in fuzzy partitions. Moreover, we validate our theoretical results through extensive comparison experiments against state-of-the-art quality indices on a variety of numerical real-world and artificial datasets.
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- 2018
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13. Digital Effect on University Decision: Perceptions of Teacher Candidates on Virtual Student Forums
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Cankaya, Ibrahim, Oztürk, Engin, and Tepe, Enes
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The objective of this study is to determine how much candidate teachers have utilized internet forums while deciding their university to study. This is a study in survey model. The population of the study consists of freshmen students studying at Usak University's Faculty of Education in 2014-2015 academic year (400 students). The scale has been distributed to the entire population, while 267 of them have been returned and 251 of them have been evaluated. "Virtual Forum Utilization during University Decision Period" scale has been developed by the researchers. The initial scale consisting of 14 items has been applied to 150 students and two items with low factor load have been dismissed. The renewed 12 item scale has been re-applied to the students. Cronbach-Alpha internal consistency coefficient of the scale has been calculated as 0.825. Validity of the scale has been tested by exploratory and confirmatory factor analyses and KMO value of the scale has been calculated as 0.811. According to the confirmatory factor analysis, the scale consists of seven items and its fit index value has proved to be acceptable. 94% of the candidate teachers have memberships at student forums, while 89% of them get online at these forums several times a day. 42% of the teacher candidates utilize these forums to follow current affairs. Candidate teachers have reported that they had frequently visited student forums while they were about to decide their university to study. Independent groups "t test" has yielded that there is no significant difference between the forum utilization levels of female and male candidate teachers. One way variance analysis has shown that candidate teachers at social sciences teaching department utilize student forums more than other departments.
- Published
- 2016
14. Adherence to best practice consensus guidelines for familial Mediterranean fever: a modified Delphi study among paediatric rheumatologists in Turkey
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Kavrul Kayaalp, Gülsah, Sozeri, Betül, Sönmez, Hafize Emine, Demir, Ferhat, Cakan, Mustafa, Oztürk, Kübra, Karadag, Serife Gül, Otar Yener, Gülcin, Ozdel, Semanur, Baglan, Esra, Celikel, Elif, Sahin, Nihal, Gezgin Yildirim, Deniz, Eker Omeroglu, Rukiye, and Aktay Ayaz, Nuray
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- 2022
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15. Warehousing Complex Archaeological Objects
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Oztürk, Aybükë, Eyango, Louis, Waksman, Sylvie Yona, Lallich, Stéphane, and Darmont, Jérôme
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Computer Science - Databases - Abstract
Data organization is a difficult and essential component in cultural heritage applications. Over the years, a great amount of archaeological ceramic data have been created and processed by various methods and devices. Such ceramic data are stored in databases that concur to increase the amount of available information rapidly. However , such databases typically focus on one type of ceramic descriptors, e.g., qualitative textual descriptions, petrographic or chemical analysis results, and do not interoperate. Thus, research involving archaeological ceramics cannot easily take advantage of combining all these types of information. In this application paper, we introduce an evolution of the Ceramom database that includes text descriptors of archaeological features, chemical analysis results, and various images, including petrographic and fabric images. To illustrate what new analyses are permitted by such a database, we source it to a data warehouse and present a sample on-line analysis processing (OLAP) scenario to gain deep understanding of ceramic context., Comment: 9th International and Interdisciplinary Conference on Modeling and Using Context (CONTEXT 2015), Nov 2015, Larnaca, Cyprus. Springer, Proceedings of the 9th International and Interdisciplinary Conference on Modeling and Using Context (CONTEXT 2015), 9405, pp.226-239, 2015, Lecture Notes in Artificial Intelligence
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- 2016
16. HMGB1, NLRP3, IL-6 and ACE2 levels are elevated in COVID-19 with headache: a window to the infection-related headache mechanism
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Hayrunnisa Bolay, Ömer Karadas, Bilgin Oztürk, Riza Sonkaya, Bahar Tasdelen, Tuba D. S. Bulut, Özlem Gülbahar, Aynur Özge, and Betül Baykan
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COVID-19 ,Headache ,Inflammation ,NLRP3 ,HMGB1 ,ACE2 ,Medicine - Abstract
Abstract Background and aim Pathogenesis of COVID-19 -related headache is unknown, though the induction of the trigeminal neurons through inflammation is proposed. We aimed to investigate key systemic circulating inflammatory molecules and their clinical relations in COVID-19 patients with headache. Methods This cross-sectional study enrolled 88 COVID-19 patients, hospitalized on a regular ward during the second wave of the pandemic. Clinical characteristics of COVID-19 patients were recorded, and laboratory tests were studied. Results The mean ages of 48 COVID-19 patients with headache (47.71 ± 10.8) and 40 COVID-19 patients without headache (45.70 ± 12.72) were comparable. COVID-19 patients suffered from headache had significantly higher serum levels of HMGB1, NLRP3, ACE2, and IL-6 than COVID-19 patients without headache, whereas CGRP and IL-10 levels were similar in the groups. Angiotensin II level was significantly decreased in the headache group. COVID-19 patients with headache showed an increased frequency of pulmonary involvement and increased D- dimer levels. Furthermore, COVID-19 was more frequently associated with weight loss, nausea, and diarrhea in patients with headache. Serum NLRP3 levels were correlated with headache duration and hospital stay, while headache response to paracetamol was negatively correlated with HMGB1 and positively associated with IL-10 levels. Conclusion Stronger inflammatory response is associated with headache in hospitalized COVID-19 patients with moderate disease severity. Increased levels of the circulating inflammatory and/or nociceptive molecules like HMGB1, NLRP3, and IL-6 may play a role in the potential induction of the trigeminal system and manifestation of headache secondary to SARS-CoV-2 infection.
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- 2021
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17. Psychological impacts of COVID-19 pandemic in cancer patients on active treatment
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Sinan Koca, Esra Koca, Ilker N. Okten, Fatma FC. Orengül, Akın Oztürk, Melike Ozçelik, Abdilkerim Oyman, Ibrahim Çil, and Mahmut Gümüş
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Covid-19 ,Cancer ,Chemotherapy ,Psychological impact ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Introduction: Although cancer patients have a high risk of exposing COVID-19 and developing severe complications, they have to receive active treatment. We aimed to determine the psychological conditions of cancer patients and shed light on the establishment of early psychological intervention and intervention policies by making specific recommendations. Method: We consecutively evaluated 385 cancer patients under treatment. Post-traumatic stress disorder (PTSD) symptoms, depression, anxiety, stress, and associated sociodemographic/clinical characteristics were investigated. In addition, we applied depression-anxiety-stress-scale-21 (DASS-21) for the mental states of patients and Impact of Event-Scale-Revised (IES-R) for the psychological effects of Covid-19. Results: The mean age was 58 (18–88). 47.2% were psychologically distressful per DASS-21, and 39.3% were traumatic per IES-R scores. 71.9% stated the risk of getting COVID-19 was high since they had cancer, and 82% stated serious complications would develop if they had COVID-19 infection. Patients diagnosed for more than one year were more stressed, anxious, and depressive (p–value = 0.001,0.003,0.049, respectively). Singles were more stressed, depressed, and traumatized than couples (p-value = 0.001, 0.011, 0.001). In multivariate analysis, a significant correlation with being under psychiatric treatment before the pandemic was found for depression (OR: 3.743, 95 %CI: 1.790–7.827) anxiety (OR: 3.776–95 %CI: 1.945–7.332) and stress levels (OR: 4.129, 95 %CI: 1.728–9.866). Having relatives who died or received treatment for COVID-19(OR: 0.515,0.296–0.895) and being unmarried (OR: 2.445–95% CI: 1.260–4.747) predicts PTSD development. Conclusions: When the psychological effects of the COVID-19 pandemic are manifesting strongly, cancer patients' anxiety and exposure levels are high. It is of great importance that clinicians understand needs, recognize psychological distress, and direct them to relevant departments for supportive care.
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- 2022
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18. The External Exposome and Allergies: From the Perspective of the Epithelial Barrier Hypothesis
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Zeynep Celebi Sozener, Ümüs Özbey Yücel, Seda Altiner, Betül Ozdel Oztürk, Pamir Cerci, Murat Türk, Begüm Gorgülü Akin, Mübeccel Akdis, Insu Yilmaz, Cevdet Ozdemir, Dilsad Mungan, and Cezmi A. Akdis
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air pollution ,climate change ,epithelial barrier ,microbiome ,nutrition ,exposome ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionIn the last decades, we have seen a rapid increase in the prevalence of allergic diseases such as asthma, allergic rhinitis, atopic dermatitis, and food allergies. The environmental changes caused by industrialization, urbanization and modernization, including dramatic increases in air pollutants such as particulate matter (PM), diesel exhaust, nitrogen dioxide (NO2), ozone (O3), alarming effects of global warming, change and loss of biodiversity, affect both human health and the entire ecosystem.ObjectiveIn this review, we aimed to discuss the effects of the external exposome on epithelial barriers and its relationship with the development of allergic diseases by considering the changes in all stakeholders of the outer exposome together, in the light of the recently proposed epithelial barrier hypothesis.MethodTo reach current, prominent, and comprehensive studies on the subject, PubMed databases were searched. We included the more resounding articles with reliable and strong results.ResultsExposure to altered environmental factors such as increased pollution, microplastics, nanoparticles, tobacco smoke, food emulsifiers, detergents, and household cleaners, and climate change, loss and change in microbial biodiversity, modifications in the consumption of dietary fatty acids, the use of emulsifiers, preservatives and the decrease in the antioxidant content of the widely consumed western diet may disrupt the epithelial barriers of the skin, respiratory and gastrointestinal tracts, making us more vulnerable to exogeneous allergens and microbes. Epithelial cell activation, microbial dysbiosis and bacterial translocation disrupt the immune balance and a chronic Th2 inflammation ensues.ConclusionDramatic increases in air pollution, worrisome effects of global warming, dysbiosis, changing dietary habits and the complex interactions of all these factors affect the epithelial barriers and local and systemic inflammation. We want to draw attention to the emerging health effects of environmental changes and to motivate the public to influence government policies for the well-being of humans and the nature of the earth and the well-being of future generations.
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- 2022
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19. Extracellular microRNAs: key players to explore the outcomes of in vitro fertilization
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Haroon Latif Khan, Shahzad Bhatti, Sana Abbas, Celal Kaloglu, Ahmed M. Isa, Hooria Younas, Rachel Ziders, Yousaf Latif Khan, Zahira Hassan, Bilgün Oztürk Turhan, Aysegul Yildiz, Hikmet Hakan Aydin, and Ender Yalcinkaya Kalyan
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PCOS ,miRNA expression ,Follicular fluid ,IVF ,Embryo quality ,Gynecology and obstetrics ,RG1-991 ,Reproduction ,QH471-489 - Abstract
Abstract Background MicroRNAs (miRNAs) are small RNA molecules that modulate post-transcriptional gene regulation. They are often used as promising non-invasive biomarkers for the early diagnosis of cancer. However, their roles in assisted reproduction are still unknown. Methods This prospective study was designed to evaluate the expression profiles of seven extracellular miRNAs (miR-7-5p, miR-202-5p, miR-378-3p, miR-224, miR-320a, miR-212-3p, and miR-21-5p) in human follicular fluid (FF) to explore the outcomes of in vitro fertilization (IVF). Of 255 women, 145 were without polycystic ovary syndrome (PCOS), and their ovarian assets were normal (NOR), while 110 were with normo-androgenic PCOS. Results The combination of six FF miRNAs expression profile discriminated between PCOS and NOR women with a sensitivity of 79.2% and a specificity of 87.32% (AUC = 0.881 [0.61; 0.92], p = 0.001). MiR-202-5p significantly had a lower abundance level, and miR-378-3p had a high abundance level in pooled FF samples from patients treated with human menopausal gonadotropin (hMG) than those treated with recombinant follicle-stimulating hormone (rFSH) (p
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- 2021
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20. Chest CT in COVID-19 pneumonia: correlations of imaging findings in clinically suspected but repeatedly RT-PCR test-negative patients
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Inan Korkmaz, Nursel Dikmen, Fatma Oztürk Keleş, and Tayibe Bal
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Computed tomography ,Polymerase chain reaction ,Severe acute respiratory syndrome coronavirus 2 ,Viral load ,Medical physics. Medical radiology. Nuclear medicine ,R895-920 - Abstract
Abstract Background To emphasize the importance of CT in the diagnosis of COVID-19 disease by comparing the thoracic CT findings of COVID-19 patients with positive RT-PCR results and patients with clinical suspicion of COVID-19 but with negative RT-PCR results. Results In our study, COVID-19 patients with positive RT-PCR results (RT-PCR (+) group) and patients with clinical suspicion of COVID-19 but negative RT-PCR results (RT-PCR (−) group) were compared in terms of CT findings. In CT images, ground-glass opacity and ground-glass opacity + patchy consolidation were the most common lesion patterns in both groups. No statistically significant differences in the rates and types of lesion patterns were observed between the two groups. In both groups, lesion distributions and distribution patterns were similarly frequent in the bilateral, peripheral, and lower lobe distributions. Among the 39 patients who underwent follow-up CT imaging in the first or second month, a regression in lesion number and density was detected in 18 patients from both groups. Consolidations were completely resorbed in 16 of these patients, and five patients had newly developed fibrotic changes. The follow-up CT examination of 16 patients was normal. Conclusions Due to the false-negative rate of RT-PCR tests caused by various reasons, clinically suspected COVID-19 patients with a contact history should be examined with CT scans, even if RT-PCR tests are negative. If the CT findings are positive, these patients should not be removed from isolation.
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- 2021
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21. Effect of different fertilizers on peppermint - Essential and non-essential nutrients, essential oils and yield
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Mahmut Tepecik, Bihter Çolak Esetlili, Bintuğ Oztürk, and Dilek Anaç
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Dried herb ,fresh herb ,inorganic fertilizers ,plant nutrients. ,Agriculture ,Plant culture ,SB1-1110 - Abstract
Peppermint (Mentha x piperita L.) plant was grown in this study using different mineral fertilizers combinations. Effects of fertilizer treatments on green and drug herb yields, herb essential nutrients (N, P, K, Ca, Na, Mg, Fe, Zn, Mn, Cu), essential oil yield, essential oil components (menthol, menthone, 1,8 cineole and menthofuran) and non-essential elements (heavy metal) (Pb, Ni, Co, Cr and Cd) were determined in two successive years (2011-2012). The highest green and drug herb yields were obtained from mono ammonium phosphate (MAP) treatments (24,980 kg ha–1 and 3070 kg ha–1) in the first year and from 15:15:15 treatments (16,950 kg ha–1 and 3080 kg ha–1) in the second year. Nutrient elements nitrogen 2.70% in MAP application, phosphorus 0.55% in mono potassium phosphate (MKP) application, potassium 3.12% in MAP application, calcium 1.47% in di ammonium phosphate (DAP) application, magnesium 0.36% in 15:15:15 application, iron 106 mg kg–1 in 15:15:15 application, copper 11.83 mg kg–1 in MAP application, zinc 35 mg kg–1 in MKP application and manganese 89 mg kg–1 in MAP application the highest value were respectively obtained from treatments. Concentrations of non-essential elements (Pb, Ni, Cr and Cd) in herb were found to be below toxic values. In both years, the highest essential oil yields were obtained from MAP treatments (4.10% in the first year and 2.90% in the second year). The essential oil components of peppermint were menthol, menthone, 1,8 cineole and menthofuran and menthol was the major component in both years. Highlights - Nitrogen fertilizer applications increased herb yield. - In terms of plant nutrients, mono ammonium phosphate and 15:15:15 fertilizers were more effective than other fertilizer applications. - Heavy metal concentrations of peppermint herb were determined below the limit values. - The main compound in peppermint essential oils was menthol in both years.
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- 2022
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22. Oxidative Stress Parameters in Patients With Migraine Without Aura
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Suat CAKİNA, Selma YÜCEL, Cemre Cagan POLAT, and Şamil OZTÜRK
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migraine ,oxidative stress ,without aura ,Medicine - Abstract
Aim:Migraine is a multifaceted neurological disease whose molecular mechanisms are not yet clearly defined. Oxidative stress is also believed to play a role in the pathogenesis of migraine. The purpose of this study was to evaluate serum paraoxonase (PON) and arylesterase (ARE) activities, thiols levels, ischemia-modified albumin (IMA), the total oxidant status (TOS), total antioxidant status (TAS), and oxidative stress index (OSI) in patients with migraine without aura.Materials and Methods:30 patients (5 males and 25 females) and 30 matched healthy controls (8 males and 22 females) were enrolled. Serum PON and ARE activities, thiols levels, IMA, TAS, TOS and OSI were determined by using the spectrophotometric method in the study groups. Statistical analysis was conducted using Mann–Whitney U test and independent samples t-test, and p
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- 2020
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23. HMGB1, NLRP3, IL-6 and ACE2 levels are elevated in COVID-19 with headache: a window to the infection-related headache mechanism
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Bolay, Hayrunnisa, Karadas, Ömer, Oztürk, Bilgin, Sonkaya, Riza, Tasdelen, Bahar, Bulut, Tuba D. S., Gülbahar, Özlem, Özge, Aynur, and Baykan, Betül
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- 2021
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24. Chest CT in COVID-19 pneumonia: correlations of imaging findings in clinically suspected but repeatedly RT-PCR test-negative patients
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Korkmaz, Inan, Dikmen, Nursel, Keleş, Fatma Oztürk, and Bal, Tayibe
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- 2021
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25. Extracellular microRNAs: key players to explore the outcomes of in vitro fertilization
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Khan, Haroon Latif, Bhatti, Shahzad, Abbas, Sana, Kaloglu, Celal, Isa, Ahmed M., Younas, Hooria, Ziders, Rachel, Khan, Yousaf Latif, Hassan, Zahira, Turhan, Bilgün Oztürk, Yildiz, Aysegul, Aydin, Hikmet Hakan, and Kalyan, Ender Yalcinkaya
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- 2021
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26. Retinoschisin gene therapy in photoreceptors, Müller glia or all retinal cells in the Rs1h-/- mouse.
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Byrne, LC, Oztürk, BE, Lee, T, Fortuny, C, Visel, M, Dalkara, D, Schaffer, DV, and Flannery, JG
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Retina ,Animals ,Mice ,Inbred C57BL ,Humans ,Mice ,Mutant Strains ,Retinoschisis ,Disease Models ,Animal ,Eye Proteins ,Cell Adhesion Molecules ,Green Fluorescent Proteins ,Electroretinography ,Organ Culture Techniques ,Aging ,Genetic Vectors ,Photoreceptor Cells ,Vertebrate ,Genetic Therapy ,Mice ,Inbred C57BL ,Mutant Strains ,Disease Models ,Animal ,Photoreceptor Cells ,Vertebrate ,Rare Diseases ,Eye Disease and Disorders of Vision ,Genetics ,Gene Therapy ,Neurosciences ,Biotechnology ,5.2 Cellular and gene therapies ,Eye ,Biological Sciences ,Medical and Health Sciences - Abstract
X-linked retinoschisis, a disease characterized by splitting of the retina, is caused by mutations in the retinoschisin gene, which encodes a putative secreted cell adhesion protein. Currently, there is no effective treatment for retinoschisis, though viral vector-mediated gene replacement therapies offer promise. We used intravitreal delivery of three different AAV vectors to target delivery of the RS1 gene to Müller glia, photoreceptors or multiple cell types throughout the retina. Müller glia radially span the entire retina, are accessible from the vitreous, and remain intact throughout progression of the disease. However, photoreceptors, not glia, normally secrete retinoschisin. We compared the efficacy of rescue mediated by retinoschisin secretion from these specific subtypes of retinal cells in the Rs1h-/- mouse model of retinoschisis. Our results indicate that all three vectors deliver the RS1 gene, and that several cell types can secrete retinoschisin, leading to transport of the protein across the retina. The greatest long-term rescue was observed when photoreceptors produce retinoschisin. Similar rescue was observed with photoreceptor-specific or generalized expression, although photoreceptor secretion may contribute to rescue in the latter case. These results collectively point to the importance of cell targeting and appropriate vector choice in the success of retinal gene therapies.
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- 2014
27. Ecofriendly Validated RP-HPTLC Method for Simultaneous Determination of the Bioactive Sesquiterpene Coumarins Feselol and Samarcandin in Five Ferula Species Using Green Solvents
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Maged S. Abdel-Kader, Mohammed H. Alqarni, Sura Baykan, Bintug Oztürk, Mohammad Ayman A. Salkini, Hasan S. Yusufoglu, Prawez Alam, and Ahmed I. Foudah
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feselol ,samarcandin ,Ferula ,HPTLC ,ICH guidelines ,quantitative ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
An environmentally friendly unreported rapid and simple reverse-phase high-performance thin-layer chromatography (RP-HPTLC) has been designed for the simultaneous determination of bioactive sesquiterpene coumarins feselol and samarcandin in the methanol extract of five Ferula species. The method was developed using glass plates coated with RP-18 silica gel 60 F254S and a green solvent system of ethanol–water mixture (8:2 v/v) as mobile phase. After development, the plates were quantified densitometrically at 254 for feselol and samarcandin. Feselol and samarcandin peaks from methanol extract of five Ferula species were identified by comparing their single band at Rf = 0.43 ± 0.02 and Rf = 0.60 ± 0.01, respectively. Valid linear relationships between the peak areas and concentrations of feselol and samarcandin in the range of 1000–7000 ng/band respectively were obtained. The method was subjected to the validation criteria of the international conference on harmonization (ICH) for precision, accuracy, and robustness. The new method provides an analytical tool to enumerate the therapeutic doses of feselol and samarcandin in herbal formulations and/or crude drugs. The obtained results indicated that F. drudeana was the richest species in the more active samarcandin, with 0.573% w/w, while F. duranii had the largest quantity of the less active feselol, 0.813% w/w. F. drudeana was superior to the other species in the sum of the two active compounds, 1.4552% w/w, and was consequently expected to be the most active aphrodisiac among the five studied species.
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- 2022
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28. Whole-exome sequencing identifies recessive WDR62 mutations in severe brain malformations.
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Bilgüvar, Kaya, Oztürk, Ali Kemal, Louvi, Angeliki, Kwan, Kenneth Y, Choi, Murim, Tatli, Burak, Yalnizoğlu, Dilek, Tüysüz, Beyhan, Cağlayan, Ahmet Okay, Gökben, Sarenur, Kaymakçalan, Hande, Barak, Tanyeri, Bakircioğlu, Mehmet, Yasuno, Katsuhito, Ho, Winson, Sanders, Stephan, Zhu, Ying, Yilmaz, Sanem, Dinçer, Alp, Johnson, Michele H, Bronen, Richard A, Koçer, Naci, Per, Hüseyin, Mane, Shrikant, Pamir, Mehmet Necmettin, Yalçinkaya, Cengiz, Kumandaş, Sefer, Topçu, Meral, Ozmen, Meral, Sestan, Nenad, Lifton, Richard P, State, Matthew W, and Günel, Murat
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Brain ,Animals ,Humans ,Mice ,Microcephaly ,Brain Diseases ,Nerve Tissue Proteins ,Pedigree ,DNA Mutational Analysis ,Base Sequence ,Genes ,Recessive ,Mutation ,Molecular Sequence Data ,Female ,Male ,Genes ,Recessive ,General Science & Technology - Abstract
The development of the human cerebral cortex is an orchestrated process involving the generation of neural progenitors in the periventricular germinal zones, cell proliferation characterized by symmetric and asymmetric mitoses, followed by migration of post-mitotic neurons to their final destinations in six highly ordered, functionally specialized layers. An understanding of the molecular mechanisms guiding these intricate processes is in its infancy, substantially driven by the discovery of rare mutations that cause malformations of cortical development. Mapping of disease loci in putative Mendelian forms of malformations of cortical development has been hindered by marked locus heterogeneity, small kindred sizes and diagnostic classifications that may not reflect molecular pathogenesis. Here we demonstrate the use of whole-exome sequencing to overcome these obstacles by identifying recessive mutations in WD repeat domain 62 (WDR62) as the cause of a wide spectrum of severe cerebral cortical malformations including microcephaly, pachygyria with cortical thickening as well as hypoplasia of the corpus callosum. Some patients with mutations in WDR62 had evidence of additional abnormalities including lissencephaly, schizencephaly, polymicrogyria and, in one instance, cerebellar hypoplasia, all traits traditionally regarded as distinct entities. In mice and humans, WDR62 transcripts and protein are enriched in neural progenitors within the ventricular and subventricular zones. Expression of WDR62 in the neocortex is transient, spanning the period of embryonic neurogenesis. Unlike other known microcephaly genes, WDR62 does not apparently associate with centrosomes and is predominantly nuclear in localization. These findings unify previously disparate aspects of cerebral cortical development and highlight the use of whole-exome sequencing to identify disease loci in settings in which traditional methods have proved challenging.
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- 2010
29. Antibiofouling thin-film composite membranes (TFC) by in situ formation of Cu-(m-phenylenediamine) oligomer complex
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Rodríguez, B., Oztürk, D., Rosales, M., Flores, M., and García, A.
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- 2018
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30. Incorporation of CuO nanoparticles into thin-film composite reverse osmosis membranes (TFC-RO) for antibiofouling properties
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García, A., Rodríguez, B., Oztürk, D., Rosales, M., Diaz, D. I., and Mautner, A.
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- 2018
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31. Dietary Protein Intake in Older Adults from Ethnic Minorities in the Netherlands, a Mixed Methods Approach
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Elvera Overdevest, Berber G. Dorhout, Mary Nicolaou, Irene G. M. van Valkengoed, Annemien Haveman-Nies, Halime Oztürk, Lisette C. P. G. M. de Groot, Michael Tieland, and Peter J. M. Weijs
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protein intake ,ethnic minorities ,older adults ,sarcopenia ,mixed methods ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Optimizing protein intake is a novel strategy to prevent age associated loss of muscle mass and strength in older adults. Such a strategy is still missing for older adults from ethnic minority populations. Protein intake in these populations is expected to be different in comparison to the majority of the population due to several socio-cultural factors. Therefore, the present study examined the dietary protein intake and underlying behavioral and environmental factors affecting protein intake among older adults from ethnic minorities in the Netherlands. We analyzed frequency questionnaire (FFQ) data from the Healthy Life in an Urban Setting (HELIUS) cohort using ANCOVA to describe dietary protein intake in older adults from ethnic minorities in the Netherlands (N = 1415, aged >55 years, African Surinamese, South Asian Surinamese, Moroccan, and Turkish). Additionally, we performed focus groups among older adults from the same ethnic minority populations (N = 69) to discover behavioral and environmental factors affecting protein intake; 40–60% of the subjects did not reach minimal dietary protein recommendations needed to maintain muscle mass (1.0 g/kg bodyweight per day (BW/day)), except for Turkish men (where it was 91%). The major sources of protein originated from animal products and were ethnic specific. Participants in the focus groups showed little knowledge and awareness about protein and its role in aging. The amount of dietary protein and irregular eating patterns seemed to be the major concern in these populations. Optimizing protein intake in these groups requires a culturally sensitive approach, which accounts for specific protein product types and sociocultural factors.
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- 2021
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32. Inflammation and Aortic Stiffness: An Individual Participant Data Meta‐Analysis in Patients With Inflammatory Bowel Disease
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Luca Zanoli, Pierre Boutouyrie, Pasquale Fatuzzo, Antonio Granata, Paolo Lentini, Kadir Oztürk, Maria Cappello, Eleni Theocharidou, Antonino Tuttolomondo, Antonio Pinto, Calogero Cammà, Anna Licata, Julien Blanco, Stefania Rastelli, Gaetano Inserra, Pietro Castellino, and Stephane Laurent
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arterial stiffness ,cardiovascular complications ,Crohn's disease ,inflammation ,pulse wave velocity ,ulcerative colitis ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
BackgroundThe recent finding that aortic pulse wave velocity (aPWV) is increased in patients with inflammatory bowel disease may explain why the cardiovascular risk is increased despite the low prevalence of traditional cardiovascular risk factors. We aimed to test whether inflammation is associated with aortic stiffening in this setting after adjustment for major confounders and to perform subgroup analyses. Methods and ResultsA systematic literature search for aPWV in inflammatory bowel disease was performed using PubMed, Scopus, Web of Science, and Google Scholar databases (last accessed May 7, 2017). Inclusion criterion was peer‐reviewed publications on clinical studies reporting original data. This study followed the Preferred Reporting Items for Systematic Review and Meta‐Analyses of individual participant data 2015 guidelines. Data were provided for 4 cohorts in 3 countries (151 participants with ulcerative colitis, 159 with Crohn's disease, and 227 control patients). Using aPWV, cohort‐specific z scores were calculated after loge‐transform and combined in meta‐analysis to form pooled effects using a random‐effects model. Compared with controls, aPWV was increased in patients with Crohn's disease (mean difference 0.78 z score; 95% confidence interval, 0.56–1.00 z score [P
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- 2017
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33. Preperitoneal catheter analgesia is an effective method for pain management after colorectal surgery: the results of 100 consecutive patients
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Ozer A, Yılmazlar A, Oztürk E, and Yılmazlar T
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Anesthesiology ,RD78.3-87.3 - Abstract
Ali Ozer,1 Aysun Yilmazlar,2 Ersin Oztürk,1 Tuncay Yilmazlar1 1Department of General Surgery, 2Department of Anesthesiology and Reanimation, Faculty of Medicine, Uludag University, Görükle, Turkey Background: In a previous prospective randomized trial, we showed that local anesthetic infusion using a preperitoneal catheter is an effective postoperative analgesic method following colorectal resections. Over time, we have improved the technique of preperitoneal catheter analgesia. In this prospective cohort study, we report the results of 100 consecutive patients who underwent colorectal resections. Materials and methods: Preperitoneal catheter analgesia was performed via a multihole catheter placed in the preperitoneal space using 10 mL 0.5% levobupivacaine every 4 hours following the operation for the first 3 days. Additional analgesics were used whenever necessary. Postoperative pain was assessed with the visual analog scale score. Short-term clinical outcomes, such as need for systemic analgesics, time to first gas and stool discharge, length of hospital stay, and morbidity, particularly surgical site infections, were reported. Results: From May 2009 to May 2010, 100 consecutive patients were recruited in the study. A total of 83 patients were operated on for malignancy, and the tumor was located in the rectum in 52 patients and in the colon in 31 patients. The median pain score was 4 (0–6), 3 (0–9), 2 (0–8), 1 (0–8), 1 (0–6), 0 (0–6), and 0 (0–3) at postoperative hours 0, 1, 4, 12, 24, 48, and 72, respectively. Additional analgesics were required in 34 patients: 21 of them required only nonsteroidal anti-inflammatory drugs, and 13 patients needed opioids additionally. The median amounts of opioid analgesics and nonsteroidal anti-inflammatory drugs were 1.76±0.78 mg and 6.70±1.18 mg, respectively. However, almost all of the additional analgesics were given in the first 24 hours. Surgical site infections were detected in eight patients. Conclusion: Preperitoneal catheter analgesia is an effective analgesic method. When applied and used properly, it may even be used as the sole analgesic method in some patients. Keywords: preperitoneal, colorectal, analgesia
- Published
- 2014
34. THE EFFECT OF GOAL DIRECTED FLUID THERAPY ON THE DEVELOPMENT OF DELIRIUM IN PATIENTS UNDERGOING CARDIAC SURGERY.
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YALDIR, Olcay, SENASLAN, Dilsad AMANVERMEZ, YILDIRIM, Funda, OZDEMIR, Imge, and OZTÜRK, Tülün
- Abstract
The incidence of delirium after cardiac surgery varies between 3-70%. (1) Systemic inflammation disorders and/or inadequate cerebral perfusion are held responsible for the pathophysiology of delirium (2). The primer aim of this study was to investigate the effects of goal-directed fluid therapy in perioperative period on the development of delirium in the early period in patients undergoing cardiopulmonary bypass. The second aim was to determine rScO2 changes in patients with delirium. The study was designed prospectively at single academic center. A total of 108 patients (mean age: 60.6±9.1 years) scheduled for elective coronary artery bypass grafting between March 2022 and November 2022 were enrolled. Patients were divided into two groups: Group Study (Group S, n=54); goal directed fluid therapy were applied. Patients were monitored through an esophageal doppler probe in addition to standard invasive monitoring. Group Control (Group C, n=54), hemodynamics were managed by standard invasive monitoring (arterial and central venous pressure). Absolute and % change values of the right and left regional cerebral oxygen saturation (rScO2) were recorded before induction (T0), after induction(T1), at 5th minutes(T2) and at 30th minutes (T3) in extracorporeal circulation and at the end of operation(T4). Hemodynamic data were also recorded simultaneously. Confusion assessment method in intensive care unit (CAM-ICU) was used to evaluate postoperative delirium in the time period that the patients stayed in the ICU and until discharge of the hospital. Two independent groups were compared statistically with appropriate parametric and non-parametric tests. Results: Postoperative delirium developed in 3 patients (5.6%) in the Group C and in 9 patients (16.7%) in the Group S (Table 1). Right and left regional cerebral oxygen saturation (rScO2) and percentage changes over time were similar (Group S vs Group C; left frontal p=0.214, right frontal p=0.413, respectively). The percentage change in left frontal rScO2 in patients with delirium was lower than patients with non-delirium during extracorporal circulation (T2 and T3), (18.32±15.3, -14.8±11.3, p<0.001; -11.2±11.9, -13.8±9.9, p<0.001, respectively). Perioperative fluid requirements and blood and blood product requirements were not different from those in the control group. In our study, perioperative goal directed fluid therapy did not change the rates of postoperative delirium in patients undergoing coronary artery bypass surgery in early period. Delirium was detected in 9 patients (16.7%) in the study group and 3 (5.6%) patients in the control group. The goal directed therapy group had significantly more negative pump balance than the standard approach. Percentages of change in right and left regional cerebral oxygen saturation (rScO2) were significantly lower during extracorporeal circulation (at T2 and T3) compared to baseline values in both groups. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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35. Concomitant chemoradiotherapy with docetaxel and cisplatin followed by consolidation chemotherapy in locally advanced unresectable non-small cell lung cancer
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Celalettin Eroglu, Okan Orhan, Dilek Unal, Gamze G Dogu, Halit Karaca, Mustafa Dikilitas, Ahmet Oztürk, Metin Ozkan, and Bünyamin Kaplan
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Cisplatin ,concomitant chemoradiotherapy ,docetaxel ,non-small cell lung cancer ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 ,Diseases of the respiratory system ,RC705-779 - Abstract
Objectives: To evaluate treatment results and toxicities in patients who received concomitant chemoradiotherapy (CRT) followed by consolidation with docetaxel and cisplatin in locally advanced unresectable non-small cell lung cancer (NSCLC). Methods: Ninety three patients were included in this retrospective study. The patients received 66 Gy radiotherapy and weekly 20 mg/m 2 docetaxel and 20 mg/m 2 cisplatin chemotherapy concomitantly. One month later than the end of CRT, consolidation chemotherapy with four cycles of docetaxel 75 mg/m 2 and cisplatin 75 mg/m 2 were administered at each 21 days. Results: Median age of the patients was 57 (range, 30-74). Following concomitant CRT, 14 patients (15%) showed complete and 50 patients (54%) showed partial response (total response rate was 69%). The median follow-up was 13 months (range: 2-51 months). The median overall survival was 18 months (95% confidential interval [CI]: 13.8-22.1 months); local control was 15 months (95% CI: 9.3-20.6 months); progression-free survival was 9 months (95% CI: 6.5-11.4 months). Esophagitis in eight (9%) patients, neutropenia in seven (8%) patients and pneumonitis in eight (9%) patients developed as grade III-IV toxicity due to concomitant CRT. Conclusion: Concomitant CRT with docetaxel and cisplatin followed by docetaxel and cisplatin consolidation chemotherapy might be considered as a feasible, and well tolerated treatment modality with high response rates despite the fact that it has not a survival advantage in patients with locally advanced unresectable NSCLC.
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- 2013
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36. Gossypiboma mimicking a distal pancreatic mass: Report of a case
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Yakan Savas, Oztürk Safak, Harman Mustafa, Tekesin Oktay, and Coker Ahmet
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gossypiboma ,pancreas ,intra-abdominal mass ,Medicine - Published
- 2010
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37. Sarcopenia assessment project in the nursing homes in Turkey
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Halil, M, Ulger, Z, Varlı, M, Döventaş, A, Oztürk, G B, Kuyumcu, M E, Yavuz, B B, Yesil, Y, Tufan, F, Cankurtaran, M, Saka, B, Sahin, S, Curgunlu, A, Tekin, N, Akçiçek, F, Karan, M A, Atlı, T, Beger, T, Erdinçler, D S, and Arıoğul, S
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- 2014
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38. Frequency of Three Hemochromatosis Gene Mutations in Antalya, Turkey
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Oztürk S, Lüleci G, and Keser I
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hereditary hemochromatosis ,hemochromatosis gene (hfe) ,c282y ,s65c ,h63d ,antalya ,Genetics ,QH426-470 - Published
- 2007
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39. Positron emission tomography/computed tomography imaging of brown tumors mimicking multiple skeletal metastases in patient with primary hyperparathyroidism
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Sait Sager, Anar Aliyev, Metin Halac, and Tulin Oztürk
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Brown tumor ,hyperparathyroidism ,flourodeoxyglocose ,positron emission tomography/computed tomography ,Diseases of the endocrine glands. Clinical endocrinology ,RC648-665 ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Brown tumors of bone are highly vascular, lytic bone lesions representing a reparative cellular process rather than a neoplastic process usually seen in patients with hyperparathyroidism. These tumors can behave aggressively and be destructive. We report a 49-year-old male patient who was admitted to our hospital with a long-term history of right shoulder and right hip pain. Multiple lytic and destructive bone lesions were found in X-ray graphy and CT images. These bone lesions mimicked multiple skeletal metastatic lesions and seemed to be those of the terminal stage of malignancy. PET scan was requested for the evaluation of FDG uptake of these lesions and to search the unknown primary tumor site. Positron emission tomography/computed tomography (PET/CT) images showed multiple hypermetabolic malignant or metastatic FDG avid bone lesions in skeletal system. However the biopsy results revealed no signs of malignancy and laboratory data showed elevated serum calcium, alkaline phosphatase, parathyroid hormone, low serum phosphate and parathyroid scintigraphy was performed. Adenoma in the left parathyroid gland was seen with Tc-99m MIBI parathyroid scintigraphy. Pathological results confirmed the diagnosis of parathyroid adenoma. Brown tumor is the potential cause of false-positive result in evaluation of a patient for unknown primary tumor or skeletal metastases with PET/CT imaging.
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- 2012
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40. The prevalence of VKORC1 1639 G>A and CYP2C9*2*3 genotypes in patients that requiring anticoagulant therapy in Turkish population
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Silan, Coskun, Dogan, Omer Tamer, Silan, Fatma, Kukulguven, Fatma Mutlu, Asgun, Halil Fatih, Ozdemir, Semra, Uludag, Ahmet, Atik, Sinem, Gungor, Buket, Akdur, Seçil, Aksulu, Hakki Engin, and Ozdemir, Oztürk
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- 2012
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41. Prevalence of known mutations in the MEFV gene in a population screening with high rate of carriers
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Ozdemir, Oztürk, Sezgin, Ilhan, Kurtulgan, Hande Kucuk, Candan, Ferhan, Koksal, Binnur, Sumer, Haldun, Icagasioglu, Dilara, Uslu, Atilla, Yildiz, Fazilet, Arslan, Sulhattin, Cetinkaya, Selma, Citli, Senol, Oztemur, Zekeriya, and Kayatas, Mansur
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- 2011
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42. Vesicovaginal reflux: recognition and diagnosis using ultrasound
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Kilicoglu, Gamze, Aslan, Ahmet R., Oztürk, Metin, Karaman, Ihsan M., and Simsek, Masum M.
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- 2010
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43. Imaging features of posterior microphthalmos
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Oztürk, O. and Postolache, L.
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- 2024
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44. The Effect of Ocular Hypotensive Agents on Macula
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Oztürk, Faruk, Yavas, Güliz Fatma, and Küsbeci, Tuncay
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- 2007
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45. Osteochondral autografting (mosaicplasty) in grade IV cartilage defects in the knee joint: 2- to 7-year results
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Oztürk, Alpaslan, Ozdemir, M. Recai, and Ozkan, Yüksel
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- 2006
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46. Halogen lamp–microwave combination baking of cookies
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Keskin, Semin Ozge, Oztürk, Serpil, Sahin, Serpil, Koksel, Hamit, and Sumnu, Gülüm
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- 2005
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47. Influence of Ethephon and 2,5-Norbornadiene on Antioxidative Enzymes and Proline Content in Salt-Stressed Spinach Leaves
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Demir, Y. and Oztürk, L.
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- 2003
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48. Effects of zinc and melatonin deficiency on testicular tissue of rats
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Oztürk, Ahmet, Baltaci, Abdulkerim Kasim, Bediz, Cem Seref, Mogulkoc, Rasim, and Güngör, Salim
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- 2003
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49. Serum salusin-α and salusin-β levels in patients with psoriasis
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Erden, Ilker, Uçak, Haydar, Demir, Betül, Cicek, Demet, Bakar Dertlioğlu, Selma, Oztürk, Savaş, and Aydin, Suleyman
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- 2015
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50. Kappa light chain myeloma with initial cutaneous involvement
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Saka, Bulent, Erten, Nilgun, Oztürk, Gulistan, Yılmaz, Cengiz, Dogan, Oner, Buyukbabani, Nesimi, and Besisik, Sevgi K.
- Published
- 2006
- Full Text
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