143 results on '"Oota, S."'
Search Results
2. Head-to-head comparison between two screening systems for HBsAG, anti-HBc, anti-HCV and HIV combination immunoassays in an international, multicentre evaluation study
- Author
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Schmidt, M., Jimenez, A., Mühlbacher, A., Oota, S., Blanco, L., Sakuldamrongpanich, T., Schennach, H., and Seifried, E.
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- 2015
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3. Long-term results of Tokyo Children's Cancer Study Group trials for childhood acute lymphoblastic leukemia, 1984–1999
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Tsuchida, M, Ohara, A, Manabe, A, Kumagai, M, Shimada, H, Kikuchi, A, Mori, T, Saito, M, Akiyama, M, Fukushima, T, Koike, K, Shiobara, M, Ogawa, C, Kanazawa, T, Noguchi, Y, Oota, S, Okimoto, Y, Yabe, H, Kajiwara, M, Tomizawa, D, Ko, K, Sugita, K, Kaneko, T, Maeda, M, Inukai, T, Goto, H, Takahashi, H, Isoyama, K, Hayashi, Y, Hosoya, R, and Hanada, R
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- 2010
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4. Genetic characterization and genotyping of hepatitis B virus (HBV) isolates from donors with an occult HBV infection
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Chamni, N., Louisirirotchanakul, S., Oota, S., Sakuldamrongpanish, T., Saldanha, J., Chongkolwatana, V., and Phikulsod, S.
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- 2014
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5. International survey on NAT testing of blood donations: expanding implementation and yield from 1999 to 2009
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Roth, W. K., Busch, M. P., Schuller, A., Ismay, S., Cheng, A., Seed, C. R., Jungbauer, C., Minsk, P. M., Sondag-Thull, D., Wendel, S., Levi, J. E., Fearon, M., Delage, G., Xie, Y., Jukic, I., Turek, P., Ullum, H., Tefanova, V., Tilk, M., Reimal, R., Castren, J., Naukkarinen, M., Assal, A., Jork, C., Hourfar, M. K., Michel, P., Offergeld, R., Pichl, L., Schmidt, M., Schottstedt, V., Seifried, E., Wagner, F., Weber-Schehl, M., Politis, C., Lin, C. K., Tsoi, W. C., OʼRiordan, J., Gottreich, A., Shinar, E., Yahalom, V., Velati, C., Satake, M., Sanad, N., Sisene, I., Bon, A. H., Koppelmann, M., Flanagan, P., Flesland, O., Brojer, E., Lętowska, M., Nascimento, F., Zhiburt, E., Chua, S. S., Teo, D., Stezinar, Levicnik S., Vermeulen, M., Reddy, R., Park, Q., Castro, E., Eiras, A., Gonzales Fraile, I., Torres, P., Ekermo, B., Niederhauser, C., Chen, H., Oota, S., Brant, L. J., Eglin, R., Jarvis, L., Mohabir, L., Brodsky, J., Foster, G., Jennings, C., Notari, E., Stramer, S., Kessler, D., Hillyer, C., Kamel, H., Katz, L., Taylor, C., Panzer, S., and Reesink, H. W.
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- 2012
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6. Antileukemic immunity associated with antineutrophil antibody production after allogeneic hematopoietic SCT for myeloid/NK-cell precursor acute leukemia
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Suzuki, H I, Suzuki, T, Kamijo, A, Oota, S, Sato, H, Hangaishi, A, Takahashi, T, Kanda, Y, Motokura, T, Chiba, S, and Kurokawa, M
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- 2008
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7. Affect in Tweets Using Experts Model
- Author
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Oota, S. R., Avvaru, A., Mounika Marreddy, and Mamidi, R.
- Subjects
FOS: Computer and information sciences ,Computer Science - Machine Learning ,Computer Science - Computation and Language ,Statistics - Machine Learning ,Machine Learning (stat.ML) ,Computation and Language (cs.CL) ,Information Retrieval (cs.IR) ,Machine Learning (cs.LG) ,Computer Science - Information Retrieval - Abstract
Estimating the intensity of emotion has gained significance as modern textual inputs in potential applications like social media, e-retail markets, psychology, advertisements etc., carry a lot of emotions, feelings, expressions along with its meaning. However, the approaches of traditional sentiment analysis primarily focuses on classifying the sentiment in general (positive or negative) or at an aspect level(very positive, low negative, etc.) and cannot exploit the intensity information. Moreover, automatically identifying emotions like anger, fear, joy, sadness, disgust etc., from text introduces challenging scenarios where single tweet may contain multiple emotions with different intensities and some emotions may even co-occur in some of the tweets. In this paper, we propose an architecture, Experts Model, inspired from the standard Mixture of Experts (MoE) model. The key idea here is each expert learns different sets of features from the feature vector which helps in better emotion detection from the tweet. We compared the results of our Experts Model with both baseline results and top five performers of SemEval-2018 Task-1, Affect in Tweets (AIT). The experimental results show that our proposed approach deals with the emotion detection problem and stands at top-5 results., 10 pages, 6 figures, The 32nd Pacific Asia Conference on Language, Information and Computation (PACLIC 32)
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- 2019
8. Radar technique for detecting voids under concrete pavement
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Matsuyama, K., primary, Oota, S., additional, Kawamorita, M., additional, and Tamura, I., additional
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- 2000
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9. Evaluation of concrete strength using radar method on structures
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Oota, S., primary, Fujiwara, T., additional, Matsuyama, K., additional, and Kanemoto, Y., additional
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- 2000
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10. Development of the neurorobotic mouse
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Lucas, P., Oota, S., Conradt, Jörg, Knoll, A., Lucas, P., Oota, S., Conradt, Jörg, and Knoll, A.
- Abstract
In this paper we describe the NeuroRobotic Mouse (NeRmo) a low-cost, modular bio mimetic robot, mimicking the actuation and walking behaviour of a common mouse (Mus musculus). This latest version has 13 Degrees of Freedom with 21 tendon driven joints and can be controlled in both open and closed loop. It is capable of different gaits as well as keeping the body upright when in a sitting position. The robot includes joint position sensors, pressure sensors on the soles of the feet as well as two cameras in the head. As the design of this robotic platform was inspired by detailed observations of the biomechanics of mice and rats, it can be used in motion research using animal data as am element of comparison, or even as actuation input., ISBN Complete proceedings: 9781728150734, QC 20211005
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- 2019
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11. Integrative Annotation of 21,037 Human Genes\ud Validated by Full-Length cDNA Clones
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Imanishi, T., Itoh, T., Suzuki, Y., O'Donovan, C., Fukuchi, S., Koyanagi, K.O., Barrero, R.A., Tamura, T., Yamaguchi-Kabata, Y., Tanino, M., Yura, K., Miyazaki, S., Ikeo, K., Homma, K., Kasprzyk, A., Nishikawa, T., Hirakawa, M., Thierry-Mieg, J., Thierry-Mieg, D., Ashurst, J., Jia, L., Nakao, M., Thomas, M.A., Mulder, N., Karavidopoulou, Y., Jin, L., Kim, S., Yasuda, T., Lenhard, B., Eveno, E., Yamasaki, C., Takeda, J., Gough, C., Hilton, P., Fujii, Y., Sakai, H., Tanaka, S., Amid, C., Bellgard, M., De Fatima Bonaldo, M., Bono, H., Bromberg, S.K., Brookes, A.J., Bruford, E., Carninci, P., Chelala, C., Couillault, C., de Souza, S.J., Debily, M., Devignes, M., Dubchak, I., Endo, T., Estreicher, A., Eyras, E., Fukami-Kobayashi, K., Gopinath, G.R., Graudens, E., Hahn, Y., Han, M., Han, Z., Hanada, K., Hanaoka, H., Harada, E., Hinz, U., Hishiki, T., Hopkinson, I., Imbeaud, S., Inoko, H., Kanapin, A., Kaneko, Y., Kasukawa, T., Kersey, P., Kikuno, R., Kimura, K., Korn, B., Kuryshev, V., Makalowska, I., Makino, T., Mano, S., Mariage-Samson, R., Mashima, J., Matsuda, H., Mewes, H., Minoshima, S., Nagai, K., Nagasaki, H., Nagata, N., Nigam, R., Ogasawara, O., Ohara, O., Ohtsubo, M., Okido, T., Oota, S., Ota, M., Ota, T., Otsuki, T., Piatier-Tonneau, D., Poustka, A., Ren, S., Saitou, N., Sakai, K., Sakamoto, S., Sakate, R., Schupp, I., Servant, F., Sherry, S., Shiba, R., Shimizu, N., Shimoyama, M., Simpson, A.J., Soares, B., Steward, C., Suwa, M., Suzuki, M., Takahashi, A., Tamiya, G., Tanaka, H., Taylor, T., Terwilliger, J.D., Unneberg, P., Veeramachaneni, V., Watanabe, S., Wilming, L., Yasuda, N., Yoo, H-S., Stodolsky, M., Makalowski, W., Go, M., Nakai, K., Takagi, T., Kanehisa, M., Sakaki, Y., Quackenbush, J., Okazaki, Y., Hayashizaki, Y., Hide, W., Chakraborty, R., Nishikawa, K., Sugawara, H., Tateno, Y., Chen, Z., Oishi, M., Tonellato, P., Apweiler, R., Okubo, K., Wagner, L., Wiemann, S., Strausberg, R.L., Isogai, T., Auffray, C., Nomura, N., Gojobori, T., and Sugano, S.
- Abstract
The human genome sequence defines our inherent biological potential; the realization of the biology encoded therein\ud requires knowledge of the function of each gene. Currently, our knowledge in this area is still limited. Several lines of\ud investigation have been used to elucidate the structure and function of the genes in the human genome. Even so, gene\ud prediction remains a difficult task, as the varieties of transcripts of a gene may vary to a great extent. We thus\ud performed an exhaustive integrative characterization of 41,118 full-length cDNAs that capture the gene transcripts as\ud complete functional cassettes, providing an unequivocal report of structural and functional diversity at the gene level.\ud Our international collaboration has validated 21,037 human gene candidates by analysis of high-quality full-length\ud cDNA clones through curation using unified criteria. This led to the identification of 5,155 new gene candidates. It also\ud manifested the most reliable way to control the quality of the cDNA clones. We have developed a human gene\ud database, called the H-Invitational Database (H-InvDB; http://www.h-invitational.jp/). It provides the following:\ud integrative annotation of human genes, description of gene structures, details of novel alternative splicing isoforms,\ud non-protein-coding RNAs, functional domains, subcellular localizations, metabolic pathways, predictions of protein\ud three-dimensional structure, mapping of known single nucleotide polymorphisms (SNPs), identification of polymorphic\ud microsatellite repeats within human genes, and comparative results with mouse full-length cDNAs. The H-InvDB\ud analysis has shown that up to 4% of the human genome sequence (National Center for Biotechnology Information\ud build 34 assembly) may contain misassembled or missing regions. We found that 6.5% of the human gene candidates\ud (1,377 loci) did not have a good protein-coding open reading frame, of which 296 loci are strong candidates for nonprotein-coding\ud RNA genes. In addition, among 72,027 uniquely mapped SNPs and insertions/deletions localized within\ud human genes, 13,215 nonsynonymous SNPs, 315 nonsense SNPs, and 452 indels occurred in coding regions. Together\ud with 25 polymorphic microsatellite repeats present in coding regions, they may alter protein structure, causing\ud phenotypic effects or resulting in disease. The H-InvDB platform represents a substantial contribution to resources\ud needed for the exploration of human biology and pathology
- Published
- 2004
12. International survey on NAT testing of blood donations : expanding implementation and yield from 1999 to 2009.
- Author
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Roth, W K, Busch, M P, Schuller, A, Ismay, S, Cheng, A, Seed, C R, Jungbauer, C, Minsk, P M, Sondag-Thull, D, Wendel, S, Levi, J E, Fearon, M, Delage, G, Xie, Y, Jukic, I, Turek, P, Ullum, H, Tefanova, V, Tilk, M, Reimal, R, Castren, J, Naukkarinen, M, Assal, A, Jork, C, Hourfar, M K, Michel, P, Offergeld, R, Pichl, L, Schmidt, M, Schottstedt, V, Seifried, E, Wagner, F, Weber-Schehl, M, Politis, C, Lin, C K, Tsoi, W C, O'Riordan, J, Gottreich, A, Shinar, E, Yahalom, V, Velati, C, Satake, M, Sanad, N, Sisene, I, Bon, A H, Koppelmann, M, Flanagan, P, Flesland, O, Brojer, E, Lętowska, M, Nascimento, F, Zhiburt, E, Chua, S S, Teo, D, Levicnik Stezinar, S, Vermeulen, M, Reddy, R, Park, Q, Castro, E, Eiras, A, Gonzales Fraile, I, Torres, P, Ekermo, Bengt, Niederhauser, C, Chen, H, Oota, S, Brant, L J, Eglin, R, Jarvis, L, Mohabir, L, Brodsky, J, Foster, G, Jennings, C, Notari, E, Stramer, S, Kessler, D, Hillyer, C, Kamel, H, Katz, L, Taylor, C, Panzer, S, Reesink, H W, Roth, W K, Busch, M P, Schuller, A, Ismay, S, Cheng, A, Seed, C R, Jungbauer, C, Minsk, P M, Sondag-Thull, D, Wendel, S, Levi, J E, Fearon, M, Delage, G, Xie, Y, Jukic, I, Turek, P, Ullum, H, Tefanova, V, Tilk, M, Reimal, R, Castren, J, Naukkarinen, M, Assal, A, Jork, C, Hourfar, M K, Michel, P, Offergeld, R, Pichl, L, Schmidt, M, Schottstedt, V, Seifried, E, Wagner, F, Weber-Schehl, M, Politis, C, Lin, C K, Tsoi, W C, O'Riordan, J, Gottreich, A, Shinar, E, Yahalom, V, Velati, C, Satake, M, Sanad, N, Sisene, I, Bon, A H, Koppelmann, M, Flanagan, P, Flesland, O, Brojer, E, Lętowska, M, Nascimento, F, Zhiburt, E, Chua, S S, Teo, D, Levicnik Stezinar, S, Vermeulen, M, Reddy, R, Park, Q, Castro, E, Eiras, A, Gonzales Fraile, I, Torres, P, Ekermo, Bengt, Niederhauser, C, Chen, H, Oota, S, Brant, L J, Eglin, R, Jarvis, L, Mohabir, L, Brodsky, J, Foster, G, Jennings, C, Notari, E, Stramer, S, Kessler, D, Hillyer, C, Kamel, H, Katz, L, Taylor, C, Panzer, S, and Reesink, H W
- Abstract
Bengt Ekermo LiU författare nr 63
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- 2012
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13. The Rice Annotation Project Database (RAP-DB): 2008 update
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Tanaka, T., Antonio, B.A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A., Nakaoka, H., Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J.-i., Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y-C, Wei, F-J, Hsing, Y-i, Zhao, Q., Bin, H., Kramer, M.R., McCombie, R.W., Lonsdale, D., O’Donovan, C.C., Whitfield, E.J., Apweiler, R., Koyanagi, K.O., Khurana, J.P., Raghuvanshi, S., Singh, N.K., Tyagi, A.K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R.M., Hoen, D.R., Bureau, T.E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R.A., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., OOta, S., Fuks, G., Messing, J., Christie, K.R., Lieberherr, D., Kim, H-R, Zuccolo, A., Wing, R.A., Nobuta, K., Green, P.J., Lu, C., Meyers, B.C., Chaparro, C., Piegu, B., Panaud, O., Echeverria, M., Tanaka, T., Antonio, B.A., Kikuchi, S., Matsumoto, T., Nagamura, Y., Numa, H., Sakai, H., Wu, J., Itoh, T., Sasaki, T., Aono, R., Fujii, Y., Habara, T., Harada, E., Kanno, M., Kawahara, Y., Kawashima, H., Kubooka, H., Matsuya, A., Nakaoka, H., Saichi, N., Sanbonmatsu, R., Sato, Y., Shinso, Y., Suzuki, M., Takeda, J.-i., Tanino, M., Todokoro, F., Yamaguchi, K., Yamamoto, N., Yamasaki, C., Imanishi, T., Okido, T., Tada, M., Ikeo, K., Tateno, Y., Gojobori, T., Lin, Y-C, Wei, F-J, Hsing, Y-i, Zhao, Q., Bin, H., Kramer, M.R., McCombie, R.W., Lonsdale, D., O’Donovan, C.C., Whitfield, E.J., Apweiler, R., Koyanagi, K.O., Khurana, J.P., Raghuvanshi, S., Singh, N.K., Tyagi, A.K., Haberer, G., Fujisawa, M., Hosokawa, S., Ito, Y., Ikawa, H., Shibata, M., Yamamoto, M., Bruskiewich, R.M., Hoen, D.R., Bureau, T.E., Namiki, N., Ohyanagi, H., Sakai, Y., Nobushima, S., Sakata, K., Barrero, R.A., Souvorov, A., Smith-White, B., Tatusova, T., An, S., An, G., OOta, S., Fuks, G., Messing, J., Christie, K.R., Lieberherr, D., Kim, H-R, Zuccolo, A., Wing, R.A., Nobuta, K., Green, P.J., Lu, C., Meyers, B.C., Chaparro, C., Piegu, B., Panaud, O., and Echeverria, M.
- Abstract
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be useful for comprehensive understanding of the rice biology. Since the last publication of the RAP-DB, the IRGSP genome has been revised and reassembled. In addition, a large number of rice-expressed sequence tags have been released, and functional genomics resources have been produced worldwide. Thus, we have thoroughly updated our genome annotation by manual curation of all the functional descriptions of rice genes. The latest version of the RAP-DB contains a variety of annotation data as follows: clone positions, structures and functions of 31 439 genes validated by cDNAs, RNA genes detected by massively parallel signature sequencing (MPSS) technology and sequence similarity, flanking sequences of mutant lines, transposable elements, etc. Other annotation data such as Gnomon can be displayed along with those of RAP for comparison. We have also developed a new keyword search system to allow the user to access useful information. The RAP-DB is available at: http://rapdb.dna.affrc.go.jp/ and http://rapdb.lab.nig.ac.jp/.
- Published
- 2008
14. The impact of ethyl icosapentate therapy on coronary fibrous-cap thickness in acute coronary syndrome patients without hyperlipidemia: Assessment by optical coherence tomography study
- Author
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Yamano, T., primary, Wada, T., additional, Nishiguchi, T., additional, Oota, S., additional, Satogami, K., additional, Ino, Y., additional, Yamaguchi, T., additional, Kubo, T., additional, Imanishi, T., additional, and Akasaka, T., additional
- Published
- 2013
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- View/download PDF
15. Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana
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Itoh, T., Tanaka, T., Barrero, R.A., Yamasaki, C., Fujii, Y., Hilton, P.B., Antonio, B.A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., Costa de Oliveira, A., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A.T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J.P., Kikuchi, S., Komatsu, S., Koyanagi, K.O., Kubooka, H., Lieberherr, D., Lin, Y-C, Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W.R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., OOta, S., Osato, N., Palmer, L.E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N.K., Smith-White, B., Takeda, J.-i., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A.K., Vanavichit, A., Wang, A., Wing, R.A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T., Sasaki, T., Itoh, T., Tanaka, T., Barrero, R.A., Yamasaki, C., Fujii, Y., Hilton, P.B., Antonio, B.A., Aono, H., Apweiler, R., Bruskiewich, R., Bureau, T., Burr, F., Costa de Oliveira, A., Fuks, G., Habara, T., Haberer, G., Han, B., Harada, E., Hiraki, A.T., Hirochika, H., Hoen, D., Hokari, H., Hosokawa, S., Hsing, Y., Ikawa, H., Ikeo, K., Imanishi, T., Ito, Y., Jaiswal, P., Kanno, M., Kawahara, Y., Kawamura, T., Kawashima, H., Khurana, J.P., Kikuchi, S., Komatsu, S., Koyanagi, K.O., Kubooka, H., Lieberherr, D., Lin, Y-C, Lonsdale, D., Matsumoto, T., Matsuya, A., McCombie, W.R., Messing, J., Miyao, A., Mulder, N., Nagamura, Y., Nam, J., Namiki, N., Numa, H., Nurimoto, S., O'Donovan, C., Ohyanagi, H., Okido, T., OOta, S., Osato, N., Palmer, L.E., Quetier, F., Raghuvanshi, S., Saichi, N., Sakai, H., Sakai, Y., Sakata, K., Sakurai, T., Sato, F., Sato, Y., Schoof, H., Seki, M., Shibata, M., Shimizu, Y., Shinozaki, K., Shinso, Y., Singh, N.K., Smith-White, B., Takeda, J.-i., Tanino, M., Tatusova, T., Thongjuea, S., Todokoro, F., Tsugane, M., Tyagi, A.K., Vanavichit, A., Wang, A., Wing, R.A., Yamaguchi, K., Yamamoto, M., Yamamoto, N., Yu, Y., Zhang, H., Zhao, Q., Higo, K., Burr, B., Gojobori, T., and Sasaki, T.
- Abstract
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated. Functions were identified or inferred in 19,969 (70%) of the proteins, and 131 possible npRNAs (including 58 antisense transcripts) were found. Almost 5000 annotated protein-coding genes were found to be disrupted in insertional mutant lines, which will accelerate future experimental validation of the annotations. The rice loci were determined by using cDNA sequences obtained from rice and other representative cereals. Our conservative estimate based on these loci and an extrapolation suggested that the gene number of rice is ∼32,000, which is smaller than previous estimates. We conducted comparative analyses between rice and Arabidopsis thaliana and found that both genomes possessed several lineage-specific genes, which might account for the observed differences between these species, while they had similar sets of predicted functional domains among the protein sequences. A system to control translational efficiency seems to be conserved across large evolutionary distances. Moreover, the evolutionary process of protein-coding genes was examined. Our results suggest that natural selection may have played a role for duplicated genes in both species, so that duplication was suppressed or favored in a manner that depended on the function of a gene.
- Published
- 2007
16. International survey on NAT testing of blood donations: expanding implementation and yield from 1999 to 2009
- Author
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Roth, W. K., primary, Busch, M. P., additional, Schuller, A., additional, Ismay, S., additional, Cheng, A., additional, Seed, C. R., additional, Jungbauer, C., additional, Minsk, P. M., additional, Sondag-Thull, D., additional, Wendel, S., additional, Levi, J. E., additional, Fearon, M., additional, Delage, G., additional, Xie, Y., additional, Jukic′, I., additional, Turek, P., additional, Ullum, H., additional, Tefanova, V., additional, Tilk, M., additional, Reimal, R., additional, Castren, J., additional, Naukkarinen, M., additional, Assal, A., additional, Jork, C., additional, Hourfar, M. K., additional, Michel, P., additional, Offergeld, R., additional, Pichl, L., additional, Schmidt, M., additional, Schottstedt, V., additional, Seifried, E., additional, Wagner, F., additional, Weber-Schehl, M., additional, Politis, C., additional, Lin, C. K., additional, Tsoi, W. C., additional, O’Riordan, J., additional, Gottreich, A., additional, Shinar, E., additional, Yahalom, V., additional, Velati, C., additional, Satake, M., additional, Sanad, N., additional, Sisene, I., additional, Bon, A. H., additional, Koppelmann, M., additional, Flanagan, P., additional, Flesland, O., additional, Brojer, E., additional, Łętowska, M., additional, Nascimento, F., additional, Zhiburt, E., additional, Chua, S. S., additional, Teo, D., additional, Stezinar, S. Levicnik, additional, Vermeulen, M., additional, Reddy, R., additional, Park, Q., additional, Castro, E., additional, Eiras, A., additional, Gonzales Fraile, I., additional, Torres, P., additional, Ekermo, B., additional, Niederhauser, C., additional, Chen, H., additional, Oota, S., additional, Brant, L. J., additional, Eglin, R., additional, Jarvis, L., additional, Mohabir, L., additional, Brodsky, J., additional, Foster, G., additional, Jennings, C., additional, Notari, E., additional, Stramer, S., additional, Kessler, D., additional, Hillyer, C., additional, Kamel, H., additional, Katz, L., additional, Taylor, C., additional, Panzer, S., additional, and Reesink, H.W., additional
- Published
- 2011
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17. Outcome of Patients with Localized Prostate Cancer Treated by Radiotherapy After Confirming the Absence of Lymph Node Invasion
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Suzuki, N., primary, Shimbo, M., additional, Amiya, Y., additional, Tomioka, S., additional, Shima, T., additional, Murakami, S., additional, Nakatsu, H., additional, Oota, S., additional, and Shimazaki, J., additional
- Published
- 2010
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- View/download PDF
18. Four-dimensional quantitative analysis of the gait of mutant mice using coarse-grained motion capture
- Author
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Oota, S., primary, Mekada, K., additional, Fujita, Y., additional, Humphries, J., additional, Fukami-Kobayashi, K., additional, Obata, Y., additional, Rowe, T., additional, and Yoshiki, A., additional
- Published
- 2009
- Full Text
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19. Evola: Ortholog database of all human genes in H-InvDB with manual curation of phylogenetic trees
- Author
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Matsuya, A., primary, Sakate, R., additional, Kawahara, Y., additional, Koyanagi, K. O., additional, Sato, Y., additional, Fujii, Y., additional, Yamasaki, C., additional, Habara, T., additional, Nakaoka, H., additional, Todokoro, F., additional, Yamaguchi, K., additional, Endo, T., additional, OOta, S., additional, Makalowski, W., additional, Ikeo, K., additional, Suzuki, Y., additional, Hanada, K., additional, Hashimoto, K., additional, Hirai, M., additional, Iwama, H., additional, Saitou, N., additional, Hiraki, A. T., additional, Jin, L., additional, Kaneko, Y., additional, Kanno, M., additional, Murakami, K., additional, Noda, A. O., additional, Saichi, N., additional, Sanbonmatsu, R., additional, Suzuki, M., additional, Takeda, J.-i., additional, Tanaka, M., additional, Gojobori, T., additional, Imanishi, T., additional, and Itoh, T., additional
- Published
- 2007
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- View/download PDF
20. Head-to-head comparison between two screening systems for HBs AG, anti- HBc, anti- HCV and HIV combination immunoassays in an international, multicentre evaluation study.
- Author
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Schmidt, M., Jimenez, A., Mühlbacher, A., Oota, S., Blanco, L., Sakuldamrongpanich, T., Schennach, H., and Seifried, E.
- Subjects
HEPATITIS associated antigen ,BLOOD transfusion ,IMMUNOASSAY ,HEPATITIS B ,HEPATITIS C diagnosis ,MEDICAL screening ,DIAGNOSIS - Abstract
Background Mandatory screening of blood donations for hepatitis B and hepatitis C viruses and human immunodeficiency viruses 1 and 2 requires assays with exceptional sensitivity and specificity. This study reports the results from a direct head-to-head comparison of the Elecsys HBs AG II, Elecsys Anti- HBc, Elecsys Anti- HCV II and Elecsys HIV combi PT immunoassays with the respective ABBOTT PRISM/Architect instrument immunoassays in a multicentre blood bank evaluation study. Study Design and Methods Assay validation was performed in the blood screening laboratories of four blood bank centres in Austria, Germany, Spain and Thailand, where both first-time donor samples (approximately 6000 donors) and repeat donor samples (approximately 14 000 donors) were screened. Results Of all screened donor samples, 93 (0·46%) were confirmed to be positive using assays from both manufacturers. The specificity of all immunoassays was >99·5% and was comparable between first-time and multiple-time donors. A direct comparison between the assays from Roche and ABBOTT according to Bland and Altman analysis demonstrated equivalent quality. Conclusions These results suggest that the Elecsys immunoassays for HBV, HCV and HIV infection, with a comparative sensitivity of 100% and a specificity exceeding the common technical specification threshold of >99·5%, meet the stringent performance criteria stipulated for blood donor screening for these infectious agents. Significant differences in the specificity between first-time and repeat donors were not detectable. [ABSTRACT FROM AUTHOR]
- Published
- 2015
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21. Development of MBR with reduced operational and maintenance costs
- Author
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Annaka, Y., primary, Hamamoto, Y., additional, Akatsu, M., additional, Maruyama, K., additional, Oota, S., additional, and Murakami, T., additional
- Published
- 2006
- Full Text
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22. Evaluation of MBR effluent characteristics for reuse purposes
- Author
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Oota, S., primary, Murakami, T., primary, Takemura, K., primary, and Noto, K., primary
- Published
- 2005
- Full Text
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23. Transparent encapsulating resin for automotive applications.
- Author
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Ito, H., Noro, H., and Oota, S.
- Published
- 2010
- Full Text
- View/download PDF
24. Cardiac Muscle Palpation System by Using Virtual Heart and Haptic-Device
- Author
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Tokuyasu, T., primary, Oota, S., additional, Kitamura, T., additional, Koyama, T., additional, Sakaguchi, G., additional, and Komeda, M., additional
- Published
- 2003
- Full Text
- View/download PDF
25. Optimal device structure for Pipe-shaped BiCS Flash memory for ultra high density storage device with excellent performance and reliability.
- Author
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Ishiduki, M., Fukuzumi, Y., Katsumata, R., Kito, M., Kido, M., Tanaka, H., Komori, Y., Nagata, Y., Fujiwara, T., Maeda, T., Mikajiri, Y., Oota, S., Honda, M., Iwata, Y., Kirisawa, R., Aochi, H., and Nitayama, A.
- Published
- 2009
- Full Text
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26. Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees
- Author
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OOta, S., primary and Saitou, N., additional
- Published
- 1999
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27. Xanthones and Benzophenones from the Stems of Garcinia multiflora
- Author
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Chiang, Y.-M., Kuo, Y.-H., Oota, S., and Fukuyama, Y.
- Abstract
Two new xanthone derivatives, garcinianones A (
1 ) and B (2 ), two new benzophenone derivatives, 4,6,4-trihydroxy-2,3-dimethoxy-3-prenylbenzophenone (3 ) and 4,6,3,4-tetrahydroxy-2-methoxybenzophenone (4 ), and a new inseparable mixture of (1E,22Z)-1,22-diferuloyloxydocosane and (1E,24Z)-1,24-diferuloyloxyteracosane (5 ), together with the previously known 3,8-dihydroxy-2,4,6-trimethoxyxanthone, 6,3-dihydroxy-2,4-dimethoxybenzophenone, maclurin (6 ), 2,4,6,3-tetrahydroxybenzophenone (7 ), and naringenin, were isolated from the stems of Garcinia multiflora. The structures of1 −5 were elucidated by extensive analysis of their spectral data. Compounds were evaluated in the brine shrimp lethality test and in the DPPH antioxidant assay.- Published
- 2003
28. Multi-arm active transfer learning for Telugu sentiment analysis
- Author
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Oota, S. R., Indurthi, V., Mounika Marreddy, Mukku, S. S., and Mamidi, R.
29. PREVENTION OF DENTAL CARIES BY ACOUSTO-OPTICALLY Q-SWITCHED ND:YAG LASER IRRADIATION
- Author
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YAMAMOTO, H, primary, SATO, K, additional, OOTA, S, additional, and NISHIMOTO, S, additional
- Published
- 1980
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30. A successfully operated case of arteriovenous malformation in the colon with massive melena.
- Author
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Nakasako, T., primary, Kasuya, S., additional, Hirayama, Y., additional, Oota, S., additional, Mikoshiba, Y., additional, Hamano, K., additional, and Hanyu, F., additional
- Published
- 1985
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31. Utilization of self-sufficing formula feed supplemented to glass silage in growing-fattening pigs.
- Author
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TAKAHASHI, T., primary, SAKURAI, Y., additional, KAYABA, T., additional, and OOTA, S., additional
- Published
- 1988
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32. Fabrication of integrated carbon nanotube field emitter with extraction electrode.
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Oota, S., Kawata, H., Yasuda, M., Pan, L., Akita, S., and Nakayama, Y.
- Published
- 2003
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33. Radar technique for detecting voids under concrete pavement
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Matsuyama, K., Oota, S., Kawamorita, M., and Tamura, I.
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34. Evaluation of concrete strength using radar method on structures
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Oota, S., Fujiwara, T., Matsuyama, K., and Kanemoto, Y.
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35. Human versus Chimpanzee Chromosome-wide Sequence Comparison and Its Evolutionary Implication.
- Author
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Sakaki, Y., Watanabe, H., Taylor, T., Hattori, M., Fujiyama, A., Toyoda, A., Kuroki, Y., Itoh, T., Saitou, N., Oota, S., Kim, C.-G., Kitano, T., Lehrach, H., Yaspo, M. -L., Sudbrak, R., Kahla, A., Reinhardt, R., Kube, M., Platzer, M., and Taenzer, S.
- Subjects
- *
CHROMOSOMES , *NUCLEOTIDE sequence , *CHIMPANZEES , *PERSONS , *GENETICS , *ANIMAL genetics - Abstract
Compares the chromosome-wide sequence levels of humans and chimpanzees. Evolutionary implications of the study; Discussion on the gene structure of the species; Genetic differences between humans and chimpanzees.
- Published
- 2003
36. A CASE OF ELECTRON RADIATION BURN DUE TO AN ELECTROSTATIC ACCELERATOR.
- Author
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Oota, S
- Published
- 1962
37. Autotaxin concentrations in peritoneal dialysis effluent reflect peritoneal function.
- Author
-
Horikoshi K, Sakai N, Oshima M, Yamauchi H, Ikeda M, Hayashi K, Yanagisawa H, Yamamori F, Kajikawa S, Hayashi D, Koshino A, Sako K, Yuasa T, Tamai A, Minami T, Nakagawa S, Kitajima S, Toyama T, Hara A, Shimizu M, Oota S, Ishida Y, Wada T, and Iwata Y
- Abstract
Introduction: Peritoneal equilibration test (PET) has been used to monitor peritoneal function. A more convenient marker would be useful in clinical situations including home medical care. Autotaxin is known to leak into the interstitium as vascular permeability increases during the progression of tissue fibrosis. Therefore, we hypothesized that autotaxin concentrations in peritoneal dialysis (PD) effluent might reflect peritoneal function., Methods: This study enrolled 45 patients undergoing PD from 2016 to 2021. Autotaxin concentrations measured in PD effluent were evaluated for their associations with markers obtained from PET., Results: Mean age was 69 years, and 33 patients were men. Univariate and multivariate analyses revealed that autotaxin concentrations are associated with dialysate/plasma creatinine ratio, end/start dialysate glucose ratio, and the dip in the dialysate sodium concentration, a marker of ultrafiltration capacity, at baseline (all p < 0.05)., Conclusions: Autotaxin concentrations in PD effluent might be an adjunct marker that reflects peritoneal function., (© 2024 International Society for Apheresis and Japanese Society for Apheresis.)
- Published
- 2024
- Full Text
- View/download PDF
38. An international review of the characteristics of viral nucleic acid-amplification testing (NAT) reveals a trend towards the use of smaller pool sizes and individual donation NAT.
- Author
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Faddy HM, Osiowy C, Custer B, Busch M, Stramer SL, Dean MM, Acutt J, Viennet E, van de Laar T, Tsoi WC, Styles C, Kiely P, Margaritis A, Kwon SY, Qiu Y, Deng X, Lewin A, Jørgensen SW, Erikstrup C, Juhl D, Sauleda S, Camacho Rodriguez BA, Soto Coral LJC, Gaviria García PA, Oota S, O'Brien SF, Wendel S, Castro E, Navarro Pérez L, Harvala H, Davison K, Reynolds C, Jarvis L, Grabarczyk P, Kopacz A, Łętowska M, O'Flaherty N, Young F, Williams P, Burke L, Chua SS, Muylaert A, Page I, Jones A, Niederhauser C, Vermeulen M, Laperche S, Gallian P, Satake M, Addas-Carvalho M, Blanco S, Gallego SV, Seltsam A, Weber-Schehl M, Al-Riyami AZ, Al Maamari K, Alawi FB, Pandey HC, França RA, and Charlewood R
- Subjects
- Humans, Blood-Borne Infections, Donor Selection methods, Blood Donors, Nucleic Acid Amplification Techniques methods
- Abstract
Background and Objectives: Nucleic acid-amplification testing (NAT) is used for screening blood donations/donors for blood-borne viruses. We reviewed global viral NAT characteristics and NAT-yield confirmatory testing used by blood operators., Materials and Methods: NAT characteristics and NAT-yield confirmatory testing used during 2019 was surveyed internationally by the International Society of Blood Transfusion Working Party Transfusion-Transmitted Infectious Diseases. Reported characteristics are presented herein., Results: NAT was mainly performed under government mandate. Human immunodeficiency virus (HIV), hepatitis C virus (HCV) and hepatitis B virus (HBV) NAT was performed on all donors and donation types, while selective testing was reported for West Nile virus, hepatitis E virus (HEV), and Zika virus. Individual donation NAT was used for HIV, HCV and HBV by ~50% of responders, while HEV was screened in mini-pools by 83% of responders performing HEV NAT. Confirmatory testing for NAT-yield samples was generally performed by NAT on a sample from the same donation or by NAT and serology on samples from the same donation and a follow-up sample., Conclusion: In the last decade, there has been a trend towards use of smaller pool sizes or individual donation NAT. We captured characteristics of NAT internationally in 2019 and provide insights into confirmatory testing approaches used for NAT-yields, potentially benefitting blood operators seeking to implement NAT., (© 2024 The Authors. Vox Sanguinis published by John Wiley & Sons Ltd on behalf of International Society of Blood Transfusion.)
- Published
- 2024
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- View/download PDF
39. International review of blood donation nucleic acid amplification testing.
- Author
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Faddy HM, Osiowy C, Custer B, Busch M, Stramer SL, Adesina O, van de Laar T, Tsoi WC, Styles C, Kiely P, Margaritis A, Kwon SY, Qiu Y, Deng X, Lewin A, Jørgensen SW, Erikstrup C, Juhl D, Sauleda S, Camacho Rodriguez BA, Coral LJCS, Gaviria García PA, Oota S, O'Brien SF, Wendel S, Castro E, Navarro Pérez L, Harvala H, Davison K, Reynolds C, Jarvis L, Grabarczyk P, Kopacz A, Łętowska M, O'Flaherty N, Young F, Williams P, Burke L, Chua SS, Muylaert A, Page I, Jones A, Niederhauser C, Vermeulen M, Laperche S, Gallian P, Sawadogo S, Satake M, Gharehbaghian A, Addas-Carvalho M, Blanco S, Gallego SV, Seltsam A, Weber-Schehl M, Al-Riyami AZ, Al Maamari K, Alawi FB, Pandey HC, Mbanya D, França RA, and Charlewood R
- Subjects
- Humans, Blood Donation, Blood Donors, Hepatitis B virus genetics, Nucleic Acid Amplification Techniques, Hepatitis B diagnosis, Nucleic Acids, Transfusion Reaction, Zika Virus, Zika Virus Infection
- Abstract
Background and Objectives: Nucleic acid amplification testing (NAT), in blood services context, is used for the detection of viral and parasite nucleic acids to reduce transfusion-transmitted infections. This project reviewed NAT for screening blood donations globally., Materials and Methods: A survey on NAT usage, developed by the International Society of Blood Transfusion Working Party on Transfusion-transmitted Infectious Diseases (ISBT WP-TTID), was distributed through ISBT WP-TTID members. Data were analysed using descriptive statistics., Results: Forty-three responses were received from 32 countries. Increased adoption of blood donation viral screening by NAT was observed over the past decade. NAT-positive donations were detected for all viruses tested in 2019 (proportion of donations positive by NAT were 0.0099% for human immunodeficiency virus [HIV], 0.0063% for hepatitis C virus [HCV], 0.0247% for hepatitis B virus [HBV], 0.0323% for hepatitis E virus [HEV], 0.0014% for West Nile virus [WNV] and 0.00005% for Zika virus [ZIKV]). Globally, over 3100 NAT-positive donations were identified as NAT yield or solely by NAT in 2019 and over 22,000 since the introduction of NAT, with HBV accounting for over half. NAT-positivity rate was higher in first-time donors for all viruses tested except WNV. During 2019, a small number of participants performed NAT for parasites (Trypanosoma cruzi, Babesia spp., Plasmodium spp.)., Conclusion: This survey captures current use of blood donation NAT globally. There has been increased NAT usage over the last decade. It is clear that NAT contributes to improving blood transfusion safety globally; however, there is a need to overcome economic barriers for regions/countries not performing NAT., (© 2024 The Authors. Vox Sanguinis published by John Wiley & Sons Ltd on behalf of International Society of Blood Transfusion.)
- Published
- 2024
- Full Text
- View/download PDF
40. The new 222-nm far ultraviolet-C lowers bacterial contamination to endoscopists during esophagogastroduodenoscopy.
- Author
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Fukutoku Y, Kikuchi H, Hoshi K, Narita K, Asari T, Miyazawa K, Sawada Y, Hayamizu S, Tatsuta T, Oota S, Hasui K, Hiraga H, Chinda D, Mikami T, Subsomwong P, Asano K, Yamane K, Ogawa Y, Sasaki M, Koi T, Ohashi H, Nakane A, and Sakuraba H
- Abstract
Objectives: This study aimed to clarify the disinfectant efficacy of the 222-nm far ultraviolet-C (UV-C) during esophagogastroduodenoscopy using bacterial cultures., Methods: The endoscopists performed esophagogastroduodenoscopy wearing a gown with a tryptic soy agar medium plate on their epigastric region and were divided into two groups: 222-nm far UV-C irradiation (UV group) and non-UV irradiation (non-UV group). As a control group, tryptic soy agar medium plates were placed about 110 cm above the floor. The incidence of bacterial contamination was determined by positive bacterial culture. The cultured bacteria were identified by 16S rRNA sequencing. Additionally, the actual UV exposure dose was measured using the UV-indicator card which changed colors upon exposure to 222 nm far UV-C., Results: The bacterial culture positivity in the UV group (5.03%) was significantly lower than that in the non-UV group (25.76%), p < 0.0001. Most of the bacteria identified in the UV and non-UV groups were normal constituents of the oral flora, including Streptococcus salivarius and Staphylococci . Conversely, pathogenic microbes were found in the control group. The actual exposure doses of 222-nm far UV-C at the endoscopists' face, neck, and epigastric region were 2.09 ± 0.29, 5.89 ± 0.49, and 7.36 ± 0.58 mJ/cm
2 , respectively., Conclusions: The 222-nm far UV-C irradiation reduced bacterial contamination for endoscopists. It can be used with conventional physical coverings to provide more effective infection control., Competing Interests: Kyosuke Yamane, Yoshimasa Ogawa, Masahiro Sasaki, Toru Koi, and Hiroyuki Ohashi are full‐time employees of Ushio Inc., (© 2023 The Authors. DEN Open published by John Wiley & Sons Australia, Ltd on behalf of Japan Gastroenterological Endoscopy Society.)- Published
- 2023
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- View/download PDF
41. Small Cell Lung Cancer Staging: Prospective Comparison of Conventional Staging Tests, FDG PET/CT, Whole-Body MRI, and Coregistered FDG PET/MRI.
- Author
-
Ohno Y, Yoshikawa T, Takenaka D, Koyama H, Aoyagi K, Yui M, Oshima Y, Hamabuchi N, Tanaka Y, Shigemura C, Oota S, Nomura M, Murayama K, Inui Y, Kikukawa K, and Toyama H
- Subjects
- Aged, Female, Fluorodeoxyglucose F18, Humans, Magnetic Resonance Imaging methods, Male, Neoplasm Staging, Positron Emission Tomography Computed Tomography methods, Positron-Emission Tomography methods, Prospective Studies, Radiopharmaceuticals, Whole Body Imaging methods, Lung Neoplasms diagnostic imaging, Lung Neoplasms pathology, Small Cell Lung Carcinoma diagnostic imaging, Small Cell Lung Carcinoma pathology
- Abstract
BACKGROUND. Whole-body MRI and FDG PET/MRI have shown encouraging results for staging of thoracic malignancy but are poorly studied for staging of small cell lung cancer (SCLC). OBJECTIVE. The purpose of our study was to compare the performance of conventional staging tests, FDG PET/CT, whole-body MRI, and FDG PET/MRI for staging of SCLC. METHODS. This prospective study included 98 patients (64 men, 34 women; median age, 74 years) with SCLC who underwent conventional staging tests (brain MRI; neck, chest, and abdominopelvic CT; and bone scintigraphy), FDG PET/CT, and whole-body MRI within 2 weeks before treatment; coregistered FDG PET/MRI was generated. Two nuclear medicine physicians independently reviewed conventional tests and FDG PET/CT examinations in separate sessions, and two chest radiologists independently reviewed whole-body MRI and FDG PET/MRI examinations in separate sessions. Readers assessed T, N, and M categories; TNM stage; and Veterans Administration Lung Cancer Study Group (VALSG) stage. Reader pairs subsequently reached consensus. Stages determined clinically during tumor board sessions served as the reference standard. RESULTS. Accuracy for T category was higher ( p < .05) for whole-body MRI (94.9%) and FDG PET/MRI (94.9%) than for FDG PET/CT (85.7%). Accuracy for N category was higher ( p < .05) for whole-body MRI (84.7%), FDG PET/MRI (83.7%), and FDG PET/CT (81.6%) than for conventional staging tests (75.5%). Accuracy for M category was higher ( p < .05) for whole-body MRI (94.9%), FDG PET/MRI (94.9%), and FDG PET/CT (94.9%) than for conventional staging tests (84.7%). Accuracy for TNM stage was higher ( p < .05) for whole-body MRI (88.8%) and FDG PET/MRI (86.7%) than for FDG PET/CT (77.6%) and conventional staging tests (72.4%). Accuracy for VALSG stage was higher ( p < .05) for whole-body MRI (95.9%), FDG PET/MRI (95.9%), and FDG PET/CT (98.0%) than for conventional staging tests (82.7%). Interobserver agreement, expressed as kappa coefficients, ranged from 0.81 to 0.94 across imaging tests and staging endpoints. CONCLUSION. FDG PET/CT, whole-body MRI, and coregistered FDG PET/MRI outperformed conventional tests for various staging endpoints in patients with SCLC. Whole-body MRI and FDG PET/MRI outperformed FDG PET/CT for T category and thus TNM stage, indicating the utility of MRI for assessing extent of local invasion in SCLC. CLINICAL IMPACT. Incorporation of either MRI approach may improve initial staging evaluation in SCLC.
- Published
- 2022
- Full Text
- View/download PDF
42. IgE reactivity to milk components in dogs with cutaneous adverse food reactions.
- Author
-
Shimakura H, Nasukawa T, Uchiyama J, Sugimoto R, Imanishi I, Oota S, Mizukami K, Fujimura M, and Sakaguchi M
- Subjects
- Allergens, Animals, Cattle, Dogs, Immunoglobulin E, Lactoglobulins, Milk, Cattle Diseases, Dog Diseases, Milk Hypersensitivity veterinary
- Abstract
We investigated the IgE reactivity to crude and purified milk antigens in the sera of 112 dogs with cutaneous adverse food reactions (CAFRs). Of the 112 dogs, 33 (29%) had specific IgE for crude milk antigens. In the dogs with milk-specific IgE, IgE reactivity to casein, bovine serum albumin (BSA), α-lactalbumin, β-lactoglobulin, and bovine IgG were 81%, 85%, 39%, 27%, and 35%, respectively. Casein and BSA may be important allergens in dogs with CAFRs. Some canine vaccines contain casein hydrolysate as a stabilizer and the pooled serum with anti-casein IgE showed IgE reactivity to the vaccines containing it. Information about IgE reactivity to casein in dogs with CAFRs could be useful for predicting adverse reactions to the vaccines including casein hydrolysate.
- Published
- 2021
- Full Text
- View/download PDF
43. Clinical usefulness of saphenous vein graft in major arterial reconstruction during extended pancreatectomy.
- Author
-
Kimura Y, Imamura M, Kuroda Y, Nagayama M, Itoh T, Oota S, Murakami T, Yamaguchi H, Nobuoka T, Kawaharada N, and Takemasa I
- Subjects
- Hepatic Artery surgery, Humans, Pancreaticoduodenectomy, Saphenous Vein, Pancreatectomy, Pancreatic Neoplasms surgery
- Abstract
Purpose: Extended pancreatectomy for locally advanced pancreatobiliary malignancy often involves combined major arterial resection (AR) and reconstruction (ARc). By limiting candidate inflow for ARc after combined resection of the celiac arterial system over a long distance, we evaluated whether great saphenous vein graft (GSVG) is an alternative conduit for obtaining non-anatomical arterial inflow., Methods: ARc with GSVG conduit was undertaken prior to resection. GSVG was harvested and anastomosed end-to-side with the reconstructing artery and then mostly passed via the retroperitoneal para-inferior vena cava route. Side-to-end anastomosis of GSVG inflow was established with the right common iliac artery or abdominal aorta., Results: Among 468 consecutive pancreatobiliary surgeries, ARc with GSVG was undertaken in seven cases. Primary cancers were in the pancreas in six patients and distal bile duct in one. Radical surgery was performed with pancreaticoduodenectomy in six patients and total pancreatectomy in one. Hepatic artery (HA) was concomitantly resected and reconstructed by GSVG in six patients or by the jejunal artery in one patient. Median operative time and intraoperative blood loss were 763 min and 350 ml, respectively. Serum level of AST, ALT, and LDH in patients with HA reconstruction by GSVG peaked by the second postoperative day and promptly normalized. Postoperative morbidity (CD ≥ III) was encountered in one patient. No surgical mortality was observed. Postoperative serum liver enzymes promptly decreased in ARc patients with GSVG to HA., Conclusion: Arterial reconstruction with GSVG prior to resection was performed securely and might help to reduce postoperative liver dysfunction.
- Published
- 2020
- Full Text
- View/download PDF
44. Somatic mutations - Evolution within the individual.
- Author
-
Oota S
- Subjects
- Genetic Testing methods, Humans, Inflammation diagnosis, Inflammation genetics, Machine Learning, Mental Disorders diagnosis, Mental Disorders genetics, Neoplasms diagnosis, Neoplasms genetics, Aging genetics, Genomics methods, Mutation Rate, RNA-Seq methods, Single-Cell Analysis methods
- Abstract
With the rapid advancement of sequencing technologies over the last two decades, it is becoming feasible to detect rare variants from somatic tissue samples. Studying such somatic mutations can provide deep insights into various senescence-related diseases, including cancer, inflammation, and sporadic psychiatric disorders. While it is still a difficult task to identify true somatic mutations, relentless efforts to combine experimental and computational methods have made it possible to obtain reliable data. Furthermore, state-of-the-art machine learning approaches have drastically improved the efficiency and sensitivity of these methods. Meanwhile, we can regard somatic mutations as a counterpart of germline mutations, and it is possible to apply well-formulated mathematical frameworks developed for population genetics and molecular evolution to analyze this 'somatic evolution'. For example, retrospective cell lineage tracing is a promising technique to elucidate the mechanism of pre-diseases using single-cell RNA-sequencing (scRNA-seq) data., (Copyright © 2019 The Author. Published by Elsevier Inc. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
45. [A Case of Pneumocystin a Patient with Pneumonia That Developed during Chemotherapy for Sigmoid Cancer].
- Author
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Murase H, Iseki H, Kikuchi T, Ogawa A, Kamachi K, Mitsuoka A, Hayashi M, Seongjin P, Fukuuchi A, Kume S, Uryuuda Y, Shinada K, Oota S, Shinoda M, and Shinkai M
- Subjects
- Humans, Male, Middle Aged, Respiratory Insufficiency, Tomography, X-Ray Computed, Pneumonia, Pneumocystis complications, Sigmoid Neoplasms complications, Sigmoid Neoplasms drug therapy
- Abstract
A 63-year-old man was diagnosed with advanced sigmoid cancer of pT3, pN0, sM1c, sP3, fStage Ⅳ post-operation. After CAPOX plus Bmab as the first-line chemotherapy, he underwent IRIS plus Bmab as the second-line chemotherapy. After 1 course of IRIS plus Bmab, he was admitted to the hospital for fever, dyspnea, and general fatigue. The white blood cell count was 6.2×10 3/mL, and the C-reactive protein was elevated to 12.9 mg/dL. The PaO2 of the artery blood gas analysis in room air was 46.3 mmHg, suggesting respiratory failure. He was diagnosed with PCP based on the bilateral diffused ground-glass opacities on chest CT along with an elevated serum b-D-glucan. The treatment of trimethoprim-sulfamethoxazole and steroid was then initiated. After the patient's clinical condition improved, he was discharged on day 27 post-admission.
- Published
- 2020
46. A Nationwide Survey of the Seroprevalence of Hepatitis E Virus Infections Among Blood Donors in Thailand.
- Author
-
Jupattanasin S, Chainuvati S, Chotiyaputta W, Chanmanee T, Supapueng O, Charoonruangrit U, Oota S, and Louisirirotchanakul S
- Subjects
- Adolescent, Adult, Animals, Female, Genotype, Hepatitis Antibodies blood, Hepatitis E blood, Hepatitis E ethnology, Hepatitis E virus genetics, Hepatitis E virus immunology, Humans, Immunoglobulin G blood, Male, Middle Aged, Seroepidemiologic Studies, Swine virology, Thailand epidemiology, Young Adult, Blood Donors statistics & numerical data, Hepatitis E epidemiology, Hepatitis E virology, Hepatitis E virus isolation & purification
- Abstract
Hepatitis E virus (HEV) is a common cause of acute hepatitis infections. Our previous 3-year study at two large Thai hospitals established an occurrence of 4-5% of HEV infections from swine HEV genotype 3 in suspected acute hepatitis patients, with the high incidence in older adults. This study was a serosurvey to determine the prevalence of HEV infections among Thai adults. We obtained sera from 630 healthy blood donors with a median age of 38 (18-64) years who attended Thai Red Cross transfusion units throughout Thailand. The donors were domiciled in 16 provinces in the northern ( n = 159), central ( n = 193), northeastern ( n = 158), and southern ( n = 120) regions. The seroprevalence of IgG antibody to HEV (anti-HEV) was determined by the EUROIMMUN test kit, using indirect enzyme-linked immunosorbent assay (ELISA) based on recombinant antigens derived from ORF2 of HEV genotypes 1 and 3. Demographic data, including information related to HEV infection risk (the number of pigs and the proportion of Muslims in each province), were also obtained. The overall anti-HEV prevalence among Thai adults was 29.7%. The frequencies of anti-HEV found in the northern (28.9%, 95% confidence interval [CI] = 22.4-36.4), northeastern (34.8%, 95% CI = 27.8-42.5), and central (35.8%, 95% CI = 29.3-42.7) regions were similar, whereas the frequency in the southern (14.2%, 95% CI = 9.0-21.5) region, known to have a large Muslim population, was low. An increasing frequency of the specific antibody was observed among the elderly. A low HEV infection rate was associated with an Islamic population where there are low number of pigs and low swine consumption. Furthermore, the higher anti-HEV incidences in the northeastern provinces might relate to the local cultural practice of consuming undercooked pork. Besides the need for an HEV vaccination in the future, there is a requirement for rapid early diagnosis; the undertaking of prevention-management campaigns might also reduce the number of infected patients.
- Published
- 2019
- Full Text
- View/download PDF
47. Recurrence of Pulmonary Arteriovenous Malformation with Non-tuberculous Mycobacteria Infection Caused by Perfusion from the Pulmonary Artery and Bronchial Artery after Coil Embolization.
- Author
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Kasai H, Sugiura T, Kobayashi T, Okamura R, Oota M, Harada N, Wada Y, Oota S, Yoshino I, Nakatani Y, and Tatsumi K
- Subjects
- Arteriovenous Fistula diagnostic imaging, Arteriovenous Fistula therapy, Bronchial Arteries diagnostic imaging, Embolization, Therapeutic methods, Female, Hemoptysis etiology, Humans, Hypoxia etiology, Pulmonary Artery diagnostic imaging, Pulmonary Veins diagnostic imaging, Radiography, Thoracic, Recurrence, Tomography, X-Ray Computed, Young Adult, Arteriovenous Fistula etiology, Embolization, Therapeutic adverse effects, Mycobacterium Infections, Nontuberculous complications, Pulmonary Artery abnormalities, Pulmonary Veins abnormalities
- Abstract
Recurrence of an embolized pulmonary arteriovenous malformation (PAVM) is common after coil embolization. A 23-year-old woman who had undergone multiple instances of transcatheter coil embolization was admitted with hypoxia and hemoptysis. A PAVM in the left S6 was found to be recanalized by reperfusion through the pulmonary and bronchial arteries. The left S6 was partially resected; the specimen contained necrotic granulomas and non-tuberculous mycobacteria (NTM) around the PAVM. Clinicians should consider possible recurrence of PAVM after reperfusion of the pulmonary and bronchial arteries, as well as the risk of NTM infection during follow-up of patients who have undergone repeated coil embolization.
- Published
- 2019
- Full Text
- View/download PDF
48. Hepatitis E virus infection in Thai blood donors.
- Author
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Intharasongkroh D, Thongmee T, Sa-Nguanmoo P, Klinfueng S, Duang-In A, Wasitthankasem R, Theamboonlers A, Charoonruangrit U, Oota S, Payungporn S, Vongpunsawad S, Chirathaworn C, and Poovorawan Y
- Subjects
- Adult, Australia, Female, Genotype, Hepatitis E virus genetics, Humans, Male, Middle Aged, North America, Real-Time Polymerase Chain Reaction, Thailand epidemiology, Blood Donors statistics & numerical data, Hepatitis E epidemiology, Hepatitis E virus pathogenicity
- Abstract
Background: Hepatitis E virus (HEV) infection in several industrialized and developing countries is associated with the consumption of pork and other meat products, an exposure risk among the majority of blood donors. We aimed to evaluate the prevalence of HEV in plasma from healthy blood donors in Thailand., Study Design and Methods: We screened blood samples collected between October and December 2015, from 30,115 individual blood donors in 5020 pools of six, for HEV RNA using in-house real-time reverse-transcription polymerase chain reaction (RT-PCR). Thrice-reactive samples were subjected to a commercial real-time RT-PCR (cobas HEV test) and evaluated for anti-HEV immunoglobulin M and immunoglobulin G antibodies. Genotyping using nested RT-PCR, nucleotide sequencing, and phylogenetic analysis was performed., Results: Twenty-six donors were positive for HEV RNA by the in-house assay, nine of whom were also positive by cobas test. None of the latter were reactive for anti-HEV immunoglobulin M or immunoglobulin G antibodies. Six samples were successfully genotyped and found to be HEV genotype 3. Thus, the frequency of HEV infection among healthy Thai blood donors is 1 in 1158., Conclusion: The presence of HEV RNA in the Thai blood supply was comparable to the rates reported in western European countries, but higher than in North America and Australia., (© 2018 AABB.)
- Published
- 2019
- Full Text
- View/download PDF
49. Human T-cell lymphotropic virus type I and II seroprevalence among volunteer blood donors in Thailand.
- Author
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Oota S, Chaiwong K, Pikulsod S, Khuenkaew R, Pheakkhuntod S, Rattajak P, Kramkratok P, Shiu C, Bhatnagar S, and Sakuldamrongpanich T
- Subjects
- Adult, Blood virology, Blood Safety, Blood Specimen Collection methods, Female, Human T-lymphotropic virus 1 immunology, Human T-lymphotropic virus 2 immunology, Humans, Male, Middle Aged, Prevalence, Seroepidemiologic Studies, Thailand epidemiology, Young Adult, Blood Donors statistics & numerical data, HTLV-I Antibodies blood, HTLV-I Infections epidemiology, HTLV-II Antibodies blood, HTLV-II Infections epidemiology
- Abstract
Human T-cell lymphotrophic virus type I and II (HTLV-I/II) are closely related but distinct retroviruses that can infect humans. Both the viruses can be transmitted via transfusion of contaminated blood components. HTLV pre-transfusion screening is not mandatory in Thailand until now. Current epidemiological data for HTLV prevalence is still lacking since the past surveys were done more than a decade ago. The main objective of this study was to determine the seroprevalence of HTLV-I/II among voluntary blood donors in Thailand. 11,057 volunteer blood donors were screened for HTLV-I/II antibodies using the ARCHITECT rHTLV-I/II chemiluminescent immunoassay (CLIA). Initial-reactive (IR) samples were subjected to repeat duplicate testing and were also sent for confirmatory testing at Korean Red Cross Society (KRC), Seoul or National Serology Reference Laboratories (NRL), Australia using alternate HTLV serological assays and immunoblot and/or specific nucleic acid testing respectively. Out of 11,057 plasma samples, 10,080 were low-risk seronegative donors and 977 were first-time/high-risk donors. Twenty of 24 IR samples were repeatedly reactive (RR) in low-risk seronegative donors group. On confirmatory testing of these 24 IR by immunoblot, 13 indeterminate and 11 negative results were observed. One out of 977 samples from first-time/high-risk donors was RR for anti-HTLV-I/II antibodies. This sample was co-reactive for HBsAg, but negative for HTLV by EIA or in-house HTLV-I qPCR. The ARCHITECT rHTLV-I/II assay exhibited a specificity of 99.93% in low-risk donors and 99.90% among high-risk donors. This study concluded that HTLV-I/II prevalence is low among blood donors in Thailand. But periodic surveillance should be continually conducted to ensure high blood safety standards in the country.
- Published
- 2018
- Full Text
- View/download PDF
50. Usefulness of 18F-FDG PET/CT for evaluating response of ocular adnexal lymphoma to treatment.
- Author
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Fujii H, Tanaka H, Nomoto Y, Harata N, Oota S, Isogai J, and Yoshida K
- Subjects
- Adult, Aged, Aged, 80 and over, Eye Neoplasms therapy, Female, Humans, Lymphoma, Non-Hodgkin therapy, Male, Middle Aged, Neoplasms, Adnexal and Skin Appendage therapy, Orbit diagnostic imaging, Orbital Neoplasms diagnostic imaging, Orbital Neoplasms therapy, Retrospective Studies, Treatment Outcome, Eye Neoplasms diagnostic imaging, Fluorodeoxyglucose F18, Lymphoma, Non-Hodgkin diagnostic imaging, Neoplasms, Adnexal and Skin Appendage diagnostic imaging, Positron Emission Tomography Computed Tomography, Radiopharmaceuticals
- Abstract
The purpose of this study was to investigate the efficacy of F-fluoro-deoxyglucose (FDG) positron emission tomography/computed tomography (PET/CT) for evaluating the ocular adnexal lymphoma treatment responses.We retrospectively reviewed data for 9 histologically confirmed cases of malignant lymphoma. All patients had at least one ocular adnexal tumor site and underwent FDG PET/CT before and after treatment. Patients' histological disease subtypes included diffuse large B-cell lymphoma (n = 3), mucosa-associated lymphoid tissue lymphoma (n = 2), follicular lymphoma (n = 1), NK/T-cell lymphoma (n = 1), lymphoplasmacytic lymphoma (n = 1), and Hodgkin lymphoma (n = 1). The highest FDG uptake by the ocular adnexal lesions was calculated as the maximum standardized uptake value (SUVmax). FDG uptake at ocular adnexal sites and sites of systemic disease after treatment were also assessed using the 5-point Deauville scale.In 1 of the 9 patients, a conjunctival lesion could not be detected by either pre- or posttreatment PET/CT. For 8 of the 9 patients, the SUVmax value at the ocular adnexal site significantly decreased after treatment (7.1 ± 5.1 vs 1.6 ± 0.58; P = .0196). For 7 of the 9 patients, the first posttreatment FDG uptake at the ocular adnexal site was considered a complete metabolic response, and these patients showed an improved clinical ophthalmic presentation with no relapse at ocular adnexal sites during follow-up.FDG PET/CT is useful for evaluation of the response of ocular adnexal lymphoma to treatment, although its usefulness may depend on the histological subtype and site of the lesion.
- Published
- 2018
- Full Text
- View/download PDF
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