32 results on '"Ong, Sean W X"'
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2. Association Between Infectious Diseases Consultation and Mortality in Hospitalized Patients With Gram-negative Bloodstream Infection: A Retrospective Population-wide Cohort Study.
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Ong, Sean W X, Luo, Jin, Fridman, Daniel J, Lee, Samantha M, Johnstone, Jennie, Schwartz, Kevin L, Diong, Christina, Patel, Samir N, MacFadden, Derek R, Langford, Bradley J, Tong, Steven Y C, Brown, Kevin A, and Daneman, Nick
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ANTIBIOTICS , *COMMUNICABLE diseases , *MEDICAL care research , *BLOOD , *RISK assessment , *CROSS infection , *HOSPITAL care , *DRUG resistance in microorganisms , *HOSPITAL mortality , *RETROSPECTIVE studies , *DISEASE prevalence , *HOSPITALS , *DESCRIPTIVE statistics , *MULTIVARIATE analysis , *LONGITUDINAL method , *ANTI-infective agents , *CELL culture , *ODDS ratio , *SEPSIS , *INTERNAL medicine , *GRAM-negative bacterial diseases , *COMPARATIVE studies , *CONFIDENCE intervals , *MEDICAL referrals , *PROPORTIONAL hazards models , *MIXED infections , *DISEASE risk factors - Abstract
Objectives Data supporting routine infectious diseases (ID) consultation in gram-negative bloodstream infection (GN-BSI) are limited. We evaluated the association between ID consultation and mortality in patients with GN-BSI in a retrospective population-wide cohort study in Ontario using linked health administrative databases. Methods Hospitalized adult patients with GN-BSI between April 2017 and December 2021 were included. The primary outcome was time to all-cause mortality censored at 30 days, analyzed using a mixed effects Cox proportional hazards model with hospital as a random effect. ID consultation 1–10 days after the first positive blood culture was treated as a time-varying exposure. Results Of 30 159 patients with GN-BSI across 53 hospitals, 11 013 (36.5%) received ID consultation. Median prevalence of ID consultation for patients with GN-BSI across hospitals was 35.0% with wide variability (range 2.7%–76.1%, interquartile range 19.6%–41.1%). In total, 1041 (9.5%) patients who received ID consultation died within 30 days, compared to 1797 (9.4%) patients without ID consultation. In the fully adjusted multivariable model, ID consultation was associated with mortality benefit (adjusted hazard ratio [HR] 0.82, 95% confidence interval [CI].77–.88, P <.0001; translating to absolute risk reduction of −3.8% or number needed to treat [NNT] of 27). Exploratory subgroup analyses of the primary outcome showed that ID consultation could have greater benefit in patients with high-risk features (nosocomial infection, polymicrobial or non-Enterobacterales infection, antimicrobial resistance, or non-urinary tract source). Conclusions Early ID consultation was associated with reduced mortality in patients with GN-BSI. If resources permit, routine ID consultation for this patient population should be considered to improve patient outcomes. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Efficacy of interferon beta-1a plus remdesivir compared with remdesivir alone in hospitalised adults with COVID-19: a double-blind, randomised, placebo-controlled, phase 3 trial
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Hewlett, Angela, Taylor, Barbara S, Bowling, Jason E, Serrano, Ruth C, Rouphael, Nadine G, Wiley, Zanthia, Phadke, Varun K, Certain, Laura, Imlay, Hannah N, Engemann, John J, Walter, Emmanuel B, Meisner, Jessica, Rajme, Sandra, Billings, Joanne, Kim, Hyun, Martinez-Orozco, Jose A, Bautista Felix, Nora, Elmor, Sammy T, Bristow, Laurel R, Mertz, Gregory, Sosa, Nestor, Bell, Taison D, West, Miranda J, Elie-Turenne, Marie-Carmelle, Grein, Jonathan, Sutterwala, Fayyaz, Gyun Choe, Pyoeng, Kyung Kang, Chang, El Sahly, Hana M, Rhie, Kevin S, Hussein, Rezhan H, Winokur, Patricia L, Mikami, Ayako, Saito, Sho, Benson, Constance A, McConnell, Kimberly, Berhe, Mezgebe, Dishner, Emma, Frank, Maria G, Sarcone, Ellen, Crouch, Pierre-Cedric B, Jang, Hannah, Jilg, Nikolaus, Perez, Katherine, Janak, Charles, Cantos, Valeria D, Rebolledo, Paulina A, Gharbin, John, Zingman, Barry S, Riska, Paul F, Falsey, Ann R, Walsh, Edward E, Branche, Angela R, Arguinchona, Henry, Arguinchona, Christa, Van Winkle, Jason W, Zea, Diego F, Jung, Jongtak, Song, Kyoung-Ho, Kim, Hong Bin, Dwyer, Jay, Bainbridge, Emma, Hostler, David C, Hostler, Jordanna M, Shahan, Brian T, Hsieh, Lanny, Amin, Alpesh N, Watanabe, Miki, Short, William R, Tebas, Pablo, Baron, Jillian T, Ahuja, Neera, Ling, Evelyn, Go, Minjoung, Yang, Otto O, Ahn, Jenny, Arias, Rubi, Rapaka, Rekha R, Hubbard, Fleesie A, Campbell, James D, Cohen, Stuart H, Thompson, George R, 3rd, Chakrabarty, Melony, Taylor, Stephanie N, Masri, Najy, Lacour, Alisha, Lee, Tida, Lalani, Tahaniyat, Lindholm, David A, Markelz, Ana Elizabeth, Mende, Katrin, Colombo, Christopher J, Schofield, Christina, Colombo, Rhonda E, Guirgis, Faheem, Holodniy, Mark, Chary, Aarthi, Bessesen, Mary, Hynes, Noreen A, Sauer, Lauren M, Marconi, Vincent C, Moanna, Abeer, Harrison, Telisha, Lye, David C, Ong, Sean W X, Ying Chia, Po, Huprikar, Nikhil, Ganesan, Anuradha, Madar, Christian, Novak, Richard M, Wendrow, Andrea, Borgetti, Scott A, George, Sarah L, Hoft, Daniel F, Brien, James D, McLellan, Susan L F, Levine, Corri, Nock, Joy, Yen Tan, Seow, Shafi, Humaira, Chien, Jaime M F, Candiotti, Keith, Finberg, Robert W, Wang, Jennifer P, Wessolossky, Mireya, Utz, Gregory C, Chambers, Susan E, Stephens, David S, Burgess, Timothy H, Rozman, Julia, Hyvert, Yann, Seitzinger, Andrea, Osinusi, Anu, Cao, Huyen, Chung, Kevin K, Conrad, Tom M, Cross, Kaitlyn, El-Khorazaty, Jill A, Hill, Heather, Pettibone, Stephanie, Wierzbicki, Michael R, Gettinger, Nikki, Engel, Theresa, Lewis, Teri, Wang, Jing, Deye, Gregory A, Nomicos, Effie, Pikaart-Tautges, Rhonda, Elsafy, Mohamed, Jurao, Robert, Koo, Hyung, Proschan, Michael, Davey, Richard, Yokum, Tammy, Arega, Janice, Florese, Ruth, Kalil, Andre C, Mehta, Aneesh K, Patterson, Thomas F, Erdmann, Nathaniel, Gomez, Carlos A, Jain, Mamta K, Wolfe, Cameron R, Ruiz-Palacios, Guillermo M, Kline, Susan, Regalado Pineda, Justino, Luetkemeyer, Anne F, Harkins, Michelle S, Jackson, Patrick E H, Iovine, Nicole M, Tapson, Victor F, Oh, Myoung-don, Whitaker, Jennifer A, Mularski, Richard A, Paules, Catharine I, Ince, Dilek, Takasaki, Jin, Sweeney, Daniel A, Sandkovsky, Uriel, Wyles, David L, Hohmann, Elizabeth, Grimes, Kevin A, Grossberg, Robert, Laguio-Vila, Maryrose, Lambert, Allison A, Lopez de Castilla, Diego, Kim, EuSuk, Larson, LuAnn, Wan, Claire R, Traenkner, Jessica J, Ponce, Philip O, Patterson, Jan E, Goepfert, Paul A, Sofarelli, Theresa A, Mocherla, Satish, Ko, Emily R, Ponce de Leon, Alfredo, Doernberg, Sarah B, Atmar, Robert L, Maves, Ryan C, Dangond, Fernando, Ferreira, Jennifer, Green, Michelle, Makowski, Mat, Bonnett, Tyler, Beresnev, Tatiana, Ghazaryan, Varduhi, Dempsey, Walla, Nayak, Seema U, Dodd, Lori, Tomashek, Kay M, and Beigel, John H
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- 2021
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4. Variant-Specific IgA Protects Against Omicron Infection.
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Goh, Yun Shan, Fong, Siew-Wai, Hor, Pei Xiang, Loh, Chiew Yee, Wang, Bei, Salleh, Siti Nazihah Mohd, Ngoh, Eve Zi Xian, Lee, Raphael Tze Chuen, Poh, Xuan Ying, Rao, Suma, Chia, Po Ying, Ong, Sean W X, Lee, Tau Hong, Lim, Clarissa, Teo, Jefanie, Pada, Surinder, Sun, Louisa Jin, Ong, Desmond Luan Seng, Somani, Jyoti, and Lee, Eng Sing
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SARS-CoV-2 ,BREAKTHROUGH infections ,SARS-CoV-2 Omicron variant ,BOOSTER vaccines ,ANTIBODY formation - Abstract
Background The emergence of rapidly evolving severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) variants, coupled with waning vaccine-induced immunity, has contributed to the rise of vaccine breakthrough infections. It is crucial to understand how vaccine-induced protection is mediated. Methods We examined 2 prospective cohorts of mRNA vaccinated and boosted individuals during the Omicron wave of infection in Singapore. Results We found that individuals who remain uninfected over the follow-up period had a higher variant-specific IgA, but not IgG, antibody response at 1 month after booster vaccination, compared with individuals who became infected. Conclusions We conclude that IgA may have a potential contributory role in protection against Omicron infection. Clinical Trials Registration. NCT05142319. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Epidemiology and clinical relevance of persistent bacteraemia in patients with Gram-negative bloodstream infection: a retrospective cohort study.
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Ong, Sean W X, Luo, Jin, Fridman, Daniel J, Lee, Samantha M, Johnstone, Jennie, Schwartz, Kevin L, Diong, Christina, Patel, Samir N, Macfadden, Derek R, Langford, Bradley J, Tong, Steven Y C, Brown, Kevin A, and Daneman, Nick
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SOFT tissue infections , *BACTEREMIA , *LOGISTIC regression analysis , *DRUG resistance in microorganisms , *GRAM-negative bacteria , *NOSOCOMIAL infections - Abstract
Objectives The risk factors and outcomes associated with persistent bacteraemia in Gram-negative bloodstream infection (GN-BSI) are not well described. We conducted a follow-on analysis of a retrospective population-wide cohort to characterize persistent bacteraemia in patients with GN-BSI. Methods We included all hospitalized patients >18 years old with GN-BSI between April 2017 and December 2021 in Ontario who received follow-up blood culture (FUBC) 2–5 days after the index positive blood culture. Persistent bacteraemia was defined as having a positive FUBC with the same Gram-negative organism as the index blood culture. We identified variables independently associated with persistent bacteraemia in a multivariable logistic regression model. We evaluated whether persistent bacteraemia was associated with increased odds of 30- and 90-day all-cause mortality using multivariable logistic regression models adjusted for potential confounders. Results In this study, 8807 patients were included; 600 (6.8%) had persistent bacteraemia. Having a permanent catheter, antimicrobial resistance, nosocomial infection, ICU admission, respiratory or skin and soft tissue source of infection, and infection by a non-fermenter or non-Enterobacterales/anaerobic organism were associated with increased odds of having persistent bacteraemia. The 30-day mortality was 17.2% versus 9.6% in those with and without persistent bacteraemia (aOR 1.65, 95% CI 1.29–2.11), while 90-day mortality was 25.5% versus 16.9%, respectively (aOR 1.53, 95% CI 1.24–1.89). Prevalence and odds of developing persistent bacteraemia varied widely depending on causative organism. Conclusions Persistent bacteraemia is uncommon in GN-BSI but is associated with poorer outcomes. A validated risk stratification tool may be useful to identify patients with persistent bacteraemia. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Evaluating the impact of a SIMPlified LaYered consent process on recruitment of potential participants to theStaphylococcus aureusNetwork Adaptive Platform trial: study protocol for a multicentre pragmatic nested randomised clinical trial (SIMPLY-SNAP trial)
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Ong, Sean W X, primary, Lee, Todd C, additional, Fowler, Robert A, additional, Mahar, Robert, additional, Pinto, Ruxandra L, additional, Rishu, Asgar, additional, Petrella, Lina, additional, Whiteway, Lyn, additional, Cheng, Matthew, additional, McDonald, Emily, additional, Johnstone, Jennie, additional, Mertz, Dominik, additional, Kandel, Christopher, additional, Somayaji, Ranjani, additional, Davis, Joshua S, additional, Tong, Steven Y C, additional, and Daneman, Nick, additional
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- 2024
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7. 378. Cost-effectiveness of an adaptive platform trial design compared to sequential conventional clinical trials for comparative drug evaluations in bloodstream infections: a simulation study
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Ong, Sean W X, primary, Daneman, Nick, additional, Tong, Steven Y C, additional, and Naimark, David, additional
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- 2023
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8. Real‐world effectiveness of sotrovimab and remdesivir for early treatment of high‐risk hospitalized COVID‐19 patients: A propensity score adjusted retrospective cohort study
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Koh, Lin Pin, primary, Chua, Siang Li, additional, Vasoo, Shawn, additional, Toh, Matthias Paul Han Sim, additional, Cutter, Jeremy Nicholas, additional, Nah, Puay Hoon, additional, Leo, Yee‐Sin, additional, Tay, Jun Xin, additional, Young, Barnaby Edward, additional, Lye, David C., additional, and Ong, Sean W. X., additional
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- 2023
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9. Efficient recall of SARS‐CoV‐2 variant‐reactive B cells and T responses in the elderly upon heterologous mRNA vaccines as boosters
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Rouers, Angeline, Wong, Nathan, Goh, Yun Shan, Torres-Ruesta, Anthony, Tay, Matthew Zirui, Chang, Zi Wei, Fong, Siew-Wai, Neo, Vanessa, Kam, Isaac Kai Jie, Yeo, Nicholas Kim-Wah, Huang, Yuling, Loh, Chiew Yee, Hor, Pei Xiang, Wong, Joel Xu En, Tan, Yong Jie, Macary, Paul A., Qian, Xinlei, Bei, Wang, Ngoh, Eve Zi Xian, Salleh, Siti Nazihah Mohd, Wang, Cheng-I, Poh, Xuan Ying, Rao, Suma, Chia, Po Ying, Ong, Sean W. X., Lee, Tau Hong, Lin, Ray J. H., Lim, Clarissa, Teo, Jefanie, Ren, Ee Chee, Lye, David C., Young, Barnaby Edward, Ng, Lisa F. P., Renia, Laurent, Lee Kong Chian School of Medicine (LKCMedicine), School of Biological Sciences, National Centre for Infectious Diseases, Tan Tock Seng Hospital, and A*STAR Infectious Diseases Labs
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Infectious Diseases ,B Cell ,Virology ,Humoral Immunity ,Medicine [Science] - Abstract
Waning antibody levels against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the emergence of variants of concern highlight the need for booster vaccinations. This is particularly important for the elderly population, who are at a higher risk of developing severe coronavirus disease 2019 (COVID-19) disease. While studies have shown increased antibody responses following booster vaccination, understanding the changes in T and B cell compartments induced by a third vaccine dose remains limited. We analyzed the humoral and cellular responses in subjects who received either a homologous messenger RNA(mRNA) booster vaccine (BNT162b2 + BNT162b2 + BNT162b2; ''BBB") or a heterologous mRNA booster vaccine (BNT162b2 + BNT162b2 + mRNA-1273; ''BBM") at Day 0 (prebooster), Day 7, and Day 28 (postbooster). Compared with BBB, elderly individuals (≥60 years old) who received the BBM vaccination regimen display higher levels of neutralizing antibodies against the Wuhan and Delta strains along with a higher boost in immunoglobulin G memory B cells, particularly against the Omicron variant. Circulating T helper type 1(Th1), Th2, Th17, and T follicular helper responses were also increased in elderly individuals given the BBM regimen. While mRNA vaccines increase antibody, T cell, and B cell responses against SARS-CoV-2 1 month after receiving the third dose booster, the efficacy of the booster vaccine strategies may vary depending on age group and regimen combination. Agency for Science, Technology and Research (A*STAR) National Medical Research Council (NMRC) Submitted/Accepted version This study was supported by Biomedical Research Council, A*CRUSE (Vaccine monitoring project), A*ccelerate GAP‐funded project (ACCL/19‐GAP064‐R20H‐H) from Agency of Science, Technology and Research (A*STAR), Singapore National Medical Research Council COVID‐19 Research Fund (COVID19RF‐001; COVID19RF‐007; COVID19RF‐0008; COVID19RF‐060; and OFLCG19May‐0034), U.S. Food and Drug Administration (#75F40120C00085), and A*STAR COVID‐19 Research funding (H/20/04/g1/006).
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- 2022
10. Antibody Response of Heterologous vs Homologous Messenger RNA Vaccine Boosters Against the Severe Acute Respiratory Syndrome Coronavirus 2 Omicron Variant: Interim Results from the PRIBIVAC Study, a Randomized Clinical Trial
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Poh, Xuan Ying, primary, Tan, Chee Wah, additional, Lee, I Russel, additional, Chavatte, Jean-Marc, additional, Fong, Siew-Wai, additional, Prince, Tessa, additional, Hartley, Catherine, additional, Yeoh, Aileen Y Y, additional, Rao, Suma, additional, Chia, Po Ying, additional, Ong, Sean W X, additional, Lee, Tau Hong, additional, Sadarangani, Sapna P, additional, Lin, Ray J H, additional, Lim, Clarissa, additional, Teo, Jefanie, additional, Lim, Daniel R X, additional, Chia, Wanni, additional, Hiscox, Julian A, additional, Ng, Lisa F P, additional, Ren, Ee Chee, additional, Lin, Raymond T P, additional, Renia, Laurent, additional, Lye, David Chien, additional, Wang, Lin-Fa, additional, and Young, Barnaby E, additional
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- 2022
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11. Real-World Use of Sotrovimab for Pre-Emptive Treatment in High-Risk Hospitalized COVID-19 Patients: An Observational Cross-Sectional Study
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Ong, Sean W. X., primary, Ren, Dongdong, additional, Lee, Pei Hua, additional, Sutjipto, Stephanie, additional, Dugan, Christopher, additional, Khoo, Bo Yan, additional, Tay, Jun Xin, additional, Vasoo, Shawn, additional, Young, Barnaby E., additional, and Lye, David C., additional
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- 2022
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12. Viral Dynamics and Immune Correlates of Coronavirus Disease 2019 (COVID-19) Severity
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Young, Barnaby E, Ong, Sean W X, Ng, Lisa F P, Anderson, Danielle E, Chia, Wan Ni, Chia, Po Ying, Ang, Li Wei, Mak, Tze-Minn, Kalimuddin, Shirin, Chai, Louis Yi Ann, Pada, Surinder, Tan, Seow Yen, Sun, Louisa, Parthasarathy, Purnima, Fong, Siew-Wai, Chan, Yi-Hao, Tan, Chee Wah, Lee, Bernett, Rötzschke, Olaf, Ding, Ying, Tambyah, Paul, Low, Jenny G H, Cui, Lin, Barkham, Timothy, Lin, Raymond Tzer Pin, Leo, Yee-Sin, Renia, Laurent, Wang, Lin-Fa, Lye, David Chien, Lim, Poh Lian, Peng Ang, Brenda Sze, Lee, Cheng Chuan, U Lee, Lawrence Soon, Ling, Li Min, Ng, Oon Tek, Chan, Monica, Marimuthu, Kalisvar, Vasoo, Shawn, Wong, Chen Seong, Lee, Tau Hong, Sadarangani, Sapna, Lin, Ray Junhao, Sadasiv, Mucheli Sharavan, Ling Ng, Deborah Hee, Choy, Chiaw Yee, En Tan, Glorijoy Shi, Tan, Yu Kit, Sutjipto, Stephanie, Lee, Pei Hua, Tay, Jun Yang, Yeo, Tsin Wen, Khoo, Bo Yan, Tay, Woo Chiao, Ng, Gabrielle, Mah, Yun Yuan, Tan, Wilnard, De, Partha Pratim, Pooja, Rao, Chia, Jonathan W Z, Constance Chen, Yuan Yi, Mendis, Shehara, Toh, Boon Kiat, Choon Fong, Raymond Kok, Lin Oh, Helen May, Fong Chien, Jaime Mei, Shafi, Humaira, Cheong, Hau Yiang, Tan, Thean Yen, Tan, Thuan Tong, Tan, Ban Hock, Wijaya, Limin, Venkatachalam, Indumathi, Chua, Ying Ying, Zhi Cherng, Benjamin Pei, Zi Chan, Yvonne Fu, Wong, Hei Man, Thien, Siew Yee, Meng Goh, Kenneth Choon, Ling Tan, Shireen Yan, Ean Oon, Lynette Lin, Chan, Kian Sing, Lin, Li, Gin Chan, Douglas Su, Ooi, Say Tat, Narayana, Deepak Rama, Somani, Jyoti, Ling Oon, Jolene Ee, Yan, Gabriel Zherong, Allen, David Michael, Jureen, Roland, Yan, Benedict, Foo, Randy, Kang, Adrian, Sivalingam, Velraj, How, Wilson, Fernandez, Norman Leo, Yeo, Nicholas Kim-Wah, Chee, Rhonda Sin-Ling, Amrun, Siti Naqiah, Lee Kong Chian School of Medicine (LKCMedicine), National Centre for Infectious Diseases, Tan Tock Seng Hospital, Yong Loo Lin School of Medicine, NUS, and Saw Swee Hock School of Public Health, NUS
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0301 basic medicine ,Microbiology (medical) ,biology ,Viral culture ,business.industry ,030106 microbiology ,COVID-19 ,medicine.disease ,03 medical and health sciences ,Pneumonia ,0302 clinical medicine ,Infectious Diseases ,Immune system ,Immunoglobulin M ,Viral pneumonia ,Immunology ,Severity of illness ,medicine ,biology.protein ,Cytokines ,Medicine [Science] ,030212 general & internal medicine ,Seroconversion ,Antibody ,business - Abstract
Background Key knowledge gaps remain in the understanding of viral dynamics and immune response of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection. Methods We evaluated these characteristics and established their association with clinical severity in a prospective observational cohort study of 100 patients with PCR-confirmed SARS-CoV-2 infection (mean age, 46 years; 56% male; 38% with comorbidities). Respiratory samples (n = 74) were collected for viral culture, serum samples for measurement of IgM/IgG levels (n = 30), and plasma samples for levels of inflammatory cytokines and chemokines (n = 81). Disease severity was correlated with results from viral culture, serologic testing, and immune markers. Results Fifty-seven (57%) patients developed viral pneumonia, of whom 20 (20%) required supplemental oxygen, including 12 (12%) with invasive mechanical ventilation. Viral culture from respiratory samples was positive for 19 of 74 patients (26%). No virus was isolated when the PCR cycle threshold (Ct) value was >30 or >14 days after symptom onset. Seroconversion occurred at a median (IQR) of 12.5 (9–18) days for IgM and 15.0 (12–20) days for IgG; 54/62 patients (87.1%) sampled at day 14 or later seroconverted. Severe infections were associated with earlier seroconversion and higher peak IgM and IgG levels. Levels of IP-10, HGF, IL-6, MCP-1, MIP-1α, IL-12p70, IL-18, VEGF-A, PDGF-BB, and IL-1RA significantly correlated with disease severity. Conclusions We found virus viability was associated with lower PCR Ct value in early illness. A stronger antibody response was associated with disease severity. The overactive proinflammatory immune signatures offer targets for host-directed immunotherapy, which should be evaluated in randomized controlled trials.
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- 2020
13. Differential aerosol shedding of SARS-CoV-2 Delta and Omicron variants during respiratory activities
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Tham, Kwok Wai, primary, Tan, Kai Sen, additional, Ong, Sean W. X., additional, Koh, Ming Hui, additional, Tay, Douglas Jie Wen, additional, Aw, Daryl Zheng Hao, additional, Nah, Yi Wei, additional, Abdullah, Mohammed Ridzwan, additional, Chu, Justin Jang Hann, additional, Chow, Vincent, additional, and Tambyah, Paul, additional
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- 2022
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14. Antibiotic Therapy in the Treatment of COVID-19 Pneumonia: Who and When?
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Ng, Tat Ming, primary, Ong, Sean W. X., additional, Loo, Audrey Y. X., additional, Tan, Sock Hoon, additional, Tay, Hui Lin, additional, Yap, Min Yi, additional, Lye, David C., additional, Lee, Tau Hong, additional, and Young, Barnaby E., additional
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- 2022
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15. Comparison of the clinical features, viral shedding and immune response in vaccine breakthrough infection by the Omicron and Delta variants
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Young, Barnaby, primary, Fong, Siew-Wai, additional, Chang, Zi Wei, additional, Tan, Kai Sen, additional, Rouers, Angeline, additional, Goh, Yun Shan, additional, Tay, Douglas Jie Wen, additional, Ong, Sean W. X., additional, Hao, Ying, additional, Chua, Siang Li, additional, Chavatte, Jean-Marc, additional, Cui, Lin, additional, Tay, Matthew, additional, Lin, Raymond Tzer Pin, additional, Renia, Laurent, additional, Leo, Yee-Sin, additional, Chu, Justin Jang Hann, additional, Lye, David, additional, and Ng, Lisa Fong Poh, additional
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- 2022
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16. Efficacy of interferon beta-1a plus remdesivir compared with remdesivir alone in hospitalised adults with COVID-19: a double-blind, randomised, placebo-controlled, phase 3 trial
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Kalil, Andre C, primary, Mehta, Aneesh K, additional, Patterson, Thomas F, additional, Erdmann, Nathaniel, additional, Gomez, Carlos A, additional, Jain, Mamta K, additional, Wolfe, Cameron R, additional, Ruiz-Palacios, Guillermo M, additional, Kline, Susan, additional, Regalado Pineda, Justino, additional, Luetkemeyer, Anne F, additional, Harkins, Michelle S, additional, Jackson, Patrick E H, additional, Iovine, Nicole M, additional, Tapson, Victor F, additional, Oh, Myoung-don, additional, Whitaker, Jennifer A, additional, Mularski, Richard A, additional, Paules, Catharine I, additional, Ince, Dilek, additional, Takasaki, Jin, additional, Sweeney, Daniel A, additional, Sandkovsky, Uriel, additional, Wyles, David L, additional, Hohmann, Elizabeth, additional, Grimes, Kevin A, additional, Grossberg, Robert, additional, Laguio-Vila, Maryrose, additional, Lambert, Allison A, additional, Lopez de Castilla, Diego, additional, Kim, EuSuk, additional, Larson, LuAnn, additional, Wan, Claire R, additional, Traenkner, Jessica J, additional, Ponce, Philip O, additional, Patterson, Jan E, additional, Goepfert, Paul A, additional, Sofarelli, Theresa A, additional, Mocherla, Satish, additional, Ko, Emily R, additional, Ponce de Leon, Alfredo, additional, Doernberg, Sarah B, additional, Atmar, Robert L, additional, Maves, Ryan C, additional, Dangond, Fernando, additional, Ferreira, Jennifer, additional, Green, Michelle, additional, Makowski, Mat, additional, Bonnett, Tyler, additional, Beresnev, Tatiana, additional, Ghazaryan, Varduhi, additional, Dempsey, Walla, additional, Nayak, Seema U, additional, Dodd, Lori, additional, Tomashek, Kay M, additional, Beigel, John H, additional, Hewlett, Angela, additional, Taylor, Barbara S, additional, Bowling, Jason E, additional, Serrano, Ruth C, additional, Rouphael, Nadine G, additional, Wiley, Zanthia, additional, Phadke, Varun K, additional, Certain, Laura, additional, Imlay, Hannah N, additional, Engemann, John J, additional, Walter, Emmanuel B, additional, Meisner, Jessica, additional, Rajme, Sandra, additional, Billings, Joanne, additional, Kim, Hyun, additional, Martinez-Orozco, Jose A, additional, Bautista Felix, Nora, additional, Elmor, Sammy T, additional, Bristow, Laurel R, additional, Mertz, Gregory, additional, Sosa, Nestor, additional, Bell, Taison D, additional, West, Miranda J, additional, Elie-Turenne, Marie-Carmelle, additional, Grein, Jonathan, additional, Sutterwala, Fayyaz, additional, Gyun Choe, Pyoeng, additional, Kyung Kang, Chang, additional, El Sahly, Hana M, additional, Rhie, Kevin S, additional, Hussein, Rezhan H, additional, Winokur, Patricia L, additional, Mikami, Ayako, additional, Saito, Sho, additional, Benson, Constance A, additional, McConnell, Kimberly, additional, Berhe, Mezgebe, additional, Dishner, Emma, additional, Frank, Maria G, additional, Sarcone, Ellen, additional, Crouch, Pierre-Cedric B, additional, Jang, Hannah, additional, Jilg, Nikolaus, additional, Perez, Katherine, additional, Janak, Charles, additional, Cantos, Valeria D, additional, Rebolledo, Paulina A, additional, Gharbin, John, additional, Zingman, Barry S, additional, Riska, Paul F, additional, Falsey, Ann R, additional, Walsh, Edward E, additional, Branche, Angela R, additional, Arguinchona, Henry, additional, Arguinchona, Christa, additional, Van Winkle, Jason W, additional, Zea, Diego F, additional, Jung, Jongtak, additional, Song, Kyoung-Ho, additional, Kim, Hong Bin, additional, Dwyer, Jay, additional, Bainbridge, Emma, additional, Hostler, David C, additional, Hostler, Jordanna M, additional, Shahan, Brian T, additional, Hsieh, Lanny, additional, Amin, Alpesh N, additional, Watanabe, Miki, additional, Short, William R, additional, Tebas, Pablo, additional, Baron, Jillian T, additional, Ahuja, Neera, additional, Ling, Evelyn, additional, Go, Minjoung, additional, Yang, Otto O, additional, Ahn, Jenny, additional, Arias, Rubi, additional, Rapaka, Rekha R, additional, Hubbard, Fleesie A, additional, Campbell, James D, additional, Cohen, Stuart H, additional, Thompson, George R, additional, Chakrabarty, Melony, additional, Taylor, Stephanie N, additional, Masri, Najy, additional, Lacour, Alisha, additional, Lee, Tida, additional, Lalani, Tahaniyat, additional, Lindholm, David A, additional, Markelz, Ana Elizabeth, additional, Mende, Katrin, additional, Colombo, Christopher J, additional, Schofield, Christina, additional, Colombo, Rhonda E, additional, Guirgis, Faheem, additional, Holodniy, Mark, additional, Chary, Aarthi, additional, Bessesen, Mary, additional, Hynes, Noreen A, additional, Sauer, Lauren M, additional, Marconi, Vincent C, additional, Moanna, Abeer, additional, Harrison, Telisha, additional, Lye, David C, additional, Ong, Sean W X, additional, Ying Chia, Po, additional, Huprikar, Nikhil, additional, Ganesan, Anuradha, additional, Madar, Christian, additional, Novak, Richard M, additional, Wendrow, Andrea, additional, Borgetti, Scott A, additional, George, Sarah L, additional, Hoft, Daniel F, additional, Brien, James D, additional, McLellan, Susan L F, additional, Levine, Corri, additional, Nock, Joy, additional, Yen Tan, Seow, additional, Shafi, Humaira, additional, Chien, Jaime M F, additional, Candiotti, Keith, additional, Finberg, Robert W, additional, Wang, Jennifer P, additional, Wessolossky, Mireya, additional, Utz, Gregory C, additional, Chambers, Susan E, additional, Stephens, David S, additional, Burgess, Timothy H, additional, Rozman, Julia, additional, Hyvert, Yann, additional, Seitzinger, Andrea, additional, Osinusi, Anu, additional, Cao, Huyen, additional, Chung, Kevin K, additional, Conrad, Tom M, additional, Cross, Kaitlyn, additional, El-Khorazaty, Jill A, additional, Hill, Heather, additional, Pettibone, Stephanie, additional, Wierzbicki, Michael R, additional, Gettinger, Nikki, additional, Engel, Theresa, additional, Lewis, Teri, additional, Wang, Jing, additional, Deye, Gregory A, additional, Nomicos, Effie, additional, Pikaart-Tautges, Rhonda, additional, Elsafy, Mohamed, additional, Jurao, Robert, additional, Koo, Hyung, additional, Proschan, Michael, additional, Davey, Richard, additional, Yokum, Tammy, additional, Arega, Janice, additional, and Florese, Ruth, additional
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- 2021
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17. Data-Driven Analysis of COVID-19 Reveals Persistent Immune Abnormalities in Convalescent Severe Individuals
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Lim, Jackwee, primary, Puan, Kia Joo, additional, Wang, Liang Wei, additional, Teng, Karen Wei Weng, additional, Loh, Chiew Yee, additional, Tan, Kim Peng, additional, Carissimo, Guillaume, additional, Chan, Yi-Hao, additional, Poh, Chek Meng, additional, Lee, Cheryl Yi-Pin, additional, Fong, Siew-Wai, additional, Yeo, Nicholas Kim-Wah, additional, Chee, Rhonda Sin-Ling, additional, Amrun, Siti Naqiah, additional, Chang, Zi Wei, additional, Tay, Matthew Zirui, additional, Torres-Ruesta, Anthony, additional, Leo Fernandez, Norman, additional, How, Wilson, additional, Andiappan, Anand Kumar, additional, Lee, Wendy, additional, Duan, Kaibo, additional, Tan, Seow-Yen, additional, Yan, Gabriel, additional, Kalimuddin, Shirin, additional, Lye, David Chien, additional, Leo, Yee-Sin, additional, Ong, Sean W. X., additional, Young, Barnaby E., additional, Renia, Laurent, additional, Ng, Lisa F. P., additional, Lee, Bernett, additional, and Rötzschke, Olaf, additional
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- 2021
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18. Viral dynamics and immune correlates of COVID-19 disease severity
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Young, Barnaby E, Ong, Sean W X, Ng, Lisa F P, Anderson, Danielle E, Chia, Wan Ni, Chia, Po Ying, Ang, Li Wei, Mak, Tze-Minn, Kalimuddin, Shirin, Chai, Louis Yi Ann, Pada, Surinder, Tan, Seow Yen, Sun, Louisa, Parthasarathy, Purnima, Fong, Siew-Wai, Chan, Yi-Hao, Tan, Chee Wah, Lee, Bernett, Rötzschke, Olaf, Ding, Ying, Tambyah, Paul, Low, Jenny G H, Cui, Lin, Barkham, Timothy, Lin, Raymond Tzer Pin, Leo, Yee-Sin, Renia, Laurent, Wang, Lin-Fa, and Lye, David Chien
- Subjects
immunology ,AcademicSubjects/MED00290 ,Severe acute respiratory syndrome-related coronavirus ,SARS-CoV-2 ,Major Article ,viral culture ,COVID-19 ,serology ,Humans ,Antibodies, Viral ,cytokines - Abstract
Background Key knowledge gaps remain in the understanding of viral dynamics and immune response of SARS-CoV-2 infection. Methods We evaluated these characteristics and established their association with clinical severity in a prospective observational cohort study of 100 patients with PCR-confirmed SARS-CoV-2 infection (mean age 46 years, 56% male, 38% with comorbidities). Respiratory samples (n=74) were collected for viral culture, serum samples for measurement of IgM/IgG levels (n=30), and plasma samples for levels of inflammatory cytokines and chemokines (n=81). Disease severity was correlated with results from viral culture, serologic testing, and immune markers. Results 57 (57%) patients developed viral pneumonia, of whom 20 (20%) required supplemental oxygen including 12 (12%) invasive mechanical ventilation. Viral culture from respiratory samples was positive for 19 of 74 patients (26%). No virus was isolated when the PCR cycle threshold (Ct) value was >30 or >14 days after symptom onset. Seroconversion occurred at a median of 12.5 days (IQR 9-18) for IgM and 15.0 days (IQR 12-20) for IgG; 54/62 patients (87.1%) sampled at day 14 or later seroconverted. Severe infections were associated with earlier seroconversion and higher peak IgM and IgG levels. Levels of IP-10, HGF, IL-6, MCP-1, MIP-1α, IL-12p70, IL-18, VEGF-A, PDGF-BB and IL-1RA significantly correlated with disease severity. Conclusion We found virus viability was associated with lower PCR Ct value in early illness. A stronger antibody response was associated with disease severity. The overactive proinflammatory immune signatures offers targets for host-directed immunotherapy which should be evaluated in randomised controlled trials.
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- 2020
19. Data-driven analysis of COVID-19 reveals specific severity patterns distinct from the temporal immune response
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Lim, Jackwee, primary, Puan, Kia Joo, additional, Wang, Liang Wei, additional, Weng Teng, Karen Wei, additional, Loh, Chiew Yee, additional, Tan, Kim Peng, additional, Carissimo, Guillaume, additional, Chan, Yi-Hao, additional, Poh, Chek Meng, additional, Lee, Cheryl Yi-Pin, additional, Fong, Siew-Wai, additional, Yeo, Nicholas Kim-Wah, additional, Chee, Rhonda Sin-Ling, additional, Amrun, Siti Naqiah, additional, Chang, Zi Wei, additional, Tay, Matthew Zirui, additional, Torres-Ruesta, Anthony, additional, Fernandez, Norman Leo, additional, How, Wilson, additional, Andiappan, Anand K., additional, Lee, Wendy, additional, Duan, Kaibo, additional, Tan, Seow-Yen, additional, Yan, Gabriel, additional, Kalimuddin, Shirin, additional, Lye, David Chien, additional, Leo, Yee-Sin, additional, Ong, Sean W. X., additional, Young, Barnaby E., additional, Renia, Laurent, additional, Ng, Lisa F.P., additional, Lee, Bernett, additional, and Rötzschke, Olaf, additional
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- 2021
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20. The Pandemic Academy: Reflections of Infectious Diseases Fellows During COVID-19
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Beh, Darius L L, primary, Ng, Dorothy H L, additional, Ong, Sean W X, additional, Sutjipto, Stephanie, additional, Lee, Pei Hua, additional, Oon, Jolene, additional, Wong, Chen Seong, additional, and Archuleta, Sophia, additional
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- 2020
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21. Viral Dynamics and Immune Correlates of Coronavirus Disease 2019 (COVID-19) Severity.
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Young, Barnaby E, Ong, Sean W X, Ng, Lisa F P, Anderson, Danielle E, Chia, Wan Ni, Chia, Po Ying, Ang, Li Wei, Mak, Tze-Minn, Kalimuddin, Shirin, Chai, Louis Yi Ann, Pada, Surinder, Tan, Seow Yen, Sun, Louisa, Parthasarathy, Purnima, Fong, Siew-Wai, Chan, Yi-Hao, Tan, Chee Wah, Lee, Bernett, Rötzschke, Olaf, and Ding, Ying
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- *
VIRAL physiology , *CYTOKINES , *BIOMARKERS , *VIRAL pneumonia , *INTERLEUKINS , *COVID-19 , *SCIENTIFIC observation , *IMMUNOGLOBULINS , *VIRAL load , *SERODIAGNOSIS , *SEROCONVERSION , *SEVERITY of illness index , *ARTIFICIAL respiration , *POLYMERASE chain reaction , *CHEMOKINES , *VASCULAR endothelial growth factors , *LONGITUDINAL method , *COMORBIDITY , *PLATELET-derived growth factor , *MICROBIAL sensitivity tests - Abstract
Background Key knowledge gaps remain in the understanding of viral dynamics and immune response of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) infection. Methods We evaluated these characteristics and established their association with clinical severity in a prospective observational cohort study of 100 patients with PCR-confirmed SARS-CoV-2 infection (mean age, 46 years; 56% male; 38% with comorbidities). Respiratory samples (n = 74) were collected for viral culture, serum samples for measurement of IgM/IgG levels (n = 30), and plasma samples for levels of inflammatory cytokines and chemokines (n = 81). Disease severity was correlated with results from viral culture, serologic testing, and immune markers. Results Fifty-seven (57%) patients developed viral pneumonia, of whom 20 (20%) required supplemental oxygen, including 12 (12%) with invasive mechanical ventilation. Viral culture from respiratory samples was positive for 19 of 74 patients (26%). No virus was isolated when the PCR cycle threshold (Ct) value was >30 or >14 days after symptom onset. Seroconversion occurred at a median (IQR) of 12.5 (9–18) days for IgM and 15.0 (12–20) days for IgG; 54/62 patients (87.1%) sampled at day 14 or later seroconverted. Severe infections were associated with earlier seroconversion and higher peak IgM and IgG levels. Levels of IP-10, HGF, IL-6, MCP-1, MIP-1α, IL-12p70, IL-18, VEGF-A, PDGF-BB, and IL-1RA significantly correlated with disease severity. Conclusions We found virus viability was associated with lower PCR Ct value in early illness. A stronger antibody response was associated with disease severity. The overactive proinflammatory immune signatures offer targets for host-directed immunotherapy, which should be evaluated in randomized controlled trials. [ABSTRACT FROM AUTHOR]
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- 2021
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22. Immunogenicity of mRNA vs. BBV152 vaccine boosters against Omicron subvariants: Final results from Phase B of the PRIBIVAC study, a randomized clinical trial.
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Poh XY, Torres-Ruesta A, Yoong T, Wong N, Tan CW, Rouers A, Chavatte JM, Goh YS, Rao S, Chia PY, Ong SWX, Lee TH, Sadarangani SP, Lin RJH, Neo V, Kam IKJ, Huang Y, Hor PX, Loh CY, Yeoh AY, Lim DRX, Chia W, Ren EC, Lin RTP, Fong SW, Renia L, Lye DC, Wang LF, Ng LFP, and Young BE
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- Humans, Female, Male, Adult, Middle Aged, Vaccines, Inactivated immunology, Vaccines, Inactivated administration & dosage, mRNA Vaccines immunology, Young Adult, Immunity, Humoral, Immunity, Cellular, Vaccines, Synthetic immunology, Vaccines, Synthetic administration & dosage, COVID-19 Vaccines immunology, COVID-19 Vaccines administration & dosage, SARS-CoV-2 immunology, SARS-CoV-2 genetics, Antibodies, Viral blood, Antibodies, Viral immunology, COVID-19 prevention & control, COVID-19 immunology, Immunization, Secondary methods, Antibodies, Neutralizing blood, Antibodies, Neutralizing immunology, Immunogenicity, Vaccine, Spike Glycoprotein, Coronavirus immunology, Spike Glycoprotein, Coronavirus genetics
- Abstract
Background: BBV152 (Covaxin™) is a whole-virion inactivated SARS-CoV-2 vaccine mixed with an immune adjuvant. We aimed to compare immune responses after booster vaccination with heterologous BBV152 versus homologous mRNA vaccine., Methods: We conducted a randomized, participant-blinded, controlled trial. Fifty mRNA-vaccinated participants were enrolled and randomized to receive an mRNA booster (n = 26) or BBV152 (n = 24). Blood samples were collected pre-vaccination, and at Day 7, 28, 180 and 360 post-booster for analysis of humoral and cellular immune responses. Primary end point was the SARS-CoV-2 anti-spike antibody titer at day 28., Results: Recruitment began in January 2022 and was terminated early due to the BBV152 group meeting pre-specified criteria for futility. At Day 28 post-boost, mean SARS-CoV-2 spike antibody titers were lower with BBV152 (2004 IU/mL; 95 % confidence interval [CI], 1132-3548) vs mRNA (26,669 IU/mL; 95 % CI, 21,330-33,266; p < 0.0001), but comparable levels of spike-specific CD4 and cytotoxic T-cells were observed. Anti-spike antibody titers remained significantly different at Day 180: BBV152 4467 IU/mL (95 % CI, 1959-10,186) vs mRNA 20,749 IU/mL (95 % CI, 12,303-35,075; p = 0.0017). Levels of surrogate virus neutralizing antibodies against ancestral and Omicron subvariants BA.1 and BA.2 were significantly higher among mRNA recipients at Day 180, including after adjusting for intercurrent infection. By Day 360, anti-spike antibody titers and neutralizing antibody levels against Omicron subvariants became similar between vaccine groups. By the end of the study, 16 in each arm (mRNA 64 % and BBV152 69.6 %) had breakthrough infections and time to COVID-19 infection between vaccine groups were similar (p = 0.63)., Conclusions: Wild-type SARS-CoV-2 anti-spike antibody titer and surrogate virus neutralizing test levels against wild-type SARS-CoV-2 and Omicron subvariants BA.1/BA.2/BA.5 were significantly higher at Day 28 and 180 in individuals who received booster vaccination with an mRNA vaccine compared with BBV152., Clinical Trial Registration Number: NCT05142319., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2024 The Authors. Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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23. First SARS-CoV-2 Omicron infection as an effective immune booster among mRNA vaccinated individuals: final results from the first phase of the PRIBIVAC randomised clinical trial.
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Poh XY, Lee IR, Tan CW, Chavatte JM, Fong SW, Goh YS, Rouers A, Wong N, Torres-Ruesta A, Mah SYY, Yeoh AYY, Gandhi M, Rahman N, Chin YQ, Lim JJ, Yoong TJK, Rao S, Chia PY, Ong SWX, Lee TH, Sadarangani SP, Lin RJH, Lim DRX, Chia W, Renia L, Ren EC, Lin RTP, Lye DC, Wang LF, Ng LFP, and Young BE
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- Humans, Male, Female, Adult, Middle Aged, Antibodies, Neutralizing immunology, Antibodies, Neutralizing blood, Immunogenicity, Vaccine, Immunity, Humoral, Vaccination methods, Aged, Spike Glycoprotein, Coronavirus immunology, Young Adult, Breakthrough Infections, SARS-CoV-2 immunology, COVID-19 prevention & control, COVID-19 immunology, Immunization, Secondary, BNT162 Vaccine immunology, BNT162 Vaccine administration & dosage, Antibodies, Viral immunology, Antibodies, Viral blood, COVID-19 Vaccines immunology, COVID-19 Vaccines administration & dosage, 2019-nCoV Vaccine mRNA-1273 immunology
- Abstract
Background: Understanding how SARS-CoV-2 breakthrough infections impacts the breadth of immune responses against existing and pre-emergent SARS-CoV-2 strains is needed to develop an evidence-based long-term immunisation strategy., Methods: We performed a randomised, controlled trial to assess the immunogenicity of homologous (BNT162b2) versus heterologous (mRNA-1273) booster vaccination in 100 BNT162b2-vaccinated infection-naïve individuals enrolled from October 2021. Post hoc analysis was performed to assess the impact of SARS-CoV-2 infection on humoral and cellular immune responses against wild-type SARS-CoV-2 and/or Omicron subvariants., Findings: 93 participants completed the study at day 360. 71% (66/93) of participants reported first SARS-CoV-2 Omicron infection by the end of the study with similar proportions of infections between homologous and heterologous booster groups (72.3% [34/47] vs 69.6% [32/46]; p = 0.82). Mean wildtype SARS-CoV-2 anti-S-RBD antibody level was significantly higher in heterologous booster group compared with homologous group at day 180 (14,588 IU/mL; 95% CI, 10,186-20,893 vs 7447 IU/mL; 4646-11,912; p = 0.025). Participants who experienced breakthrough infections during the Omicron BA.1/2 wave had significantly higher anti-S-RBD antibody levels against wildtype SARS-CoV-2 and antibody neutralisation against BA.1 and pre-emergent BA.5 compared with infection-naïve participants. Regardless of hybrid immunity status, wildtype SARS-CoV-2 anti-S-RBD antibody level declined significantly after six months post-booster or post-SARS-CoV-2 infection., Interpretation: Booster vaccination with mRNA-1273 was associated with significantly higher antibody levels compared with BNT162b2. Antibody responses are narrower and decline faster among uninfected, vaccinated individuals. Boosters may be more effective if administered shortly before infection outbreaks and at least six months after last infection or booster., Funding: Singapore NMRC, USFDA, MRC., Competing Interests: Declaration of interests Young reports personal fees from Astra-Zeneca, Gilead, Moderna, Pfizer and Sanofi outside the submitted work. Chia and Wang disclose that a patent (Patent No.: US 11,054,429 B1) was issued for the surrogate virus neutralisation test platform (cPass kit) used in this study, and declare royalty payment from GenScript for inventing the technology. All other authors no potential conflicts of interest., (Copyright © 2024 The Author(s). Published by Elsevier B.V. All rights reserved.)
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- 2024
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24. Follow-up blood cultures do not reduce mortality in hospitalized patients with Gram-negative bloodstream infection: a retrospective population-wide cohort study.
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Ong SWX, Luo J, Fridman DJ, Lee SM, Johnstone J, Schwartz KL, Diong C, Patel SN, MacFadden D, Langford B, Tong SYC, Brown KA, and Daneman N
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- Humans, Retrospective Studies, Male, Female, Aged, Middle Aged, Ontario epidemiology, Length of Stay statistics & numerical data, Hospitalization, Aged, 80 and over, Follow-Up Studies, Adult, Blood Culture methods, Gram-Negative Bacterial Infections mortality, Gram-Negative Bacterial Infections microbiology, Bacteremia mortality, Bacteremia microbiology
- Abstract
Objectives: The utility of follow-up blood cultures (FUBCs) in patients with Gram-negative bloodstream infection (GN-BSI) is controversial. Observational studies have suggested significant mortality benefit but may be limited by single-centre designs, immortal time bias, and residual confounding. We examined the impact of FUBCs on mortality in patients with GN-BSI in a retrospective population-wide cohort study in Ontario, Canada., Methods: Adult patients with GN-BSI hospitalized between April 2017 and December 2021 were included. Primary outcome was all-cause mortality within 30 days. FUBC was treated as a time-varying exposure. Secondary outcomes were 90-day mortality, length of stay, and number of days alive and out of hospital at 30 and 90 days., Results: Thirty-four thousand one hundred patients were included; 8807 (25.8%) patients received FUBC, of which 966 (11.0%) were positive. Median proportion of patients receiving FUBC was 18.8% (interquartile range, 10.0-29.7%; range, 0-66.1%) across 101 hospitals; this correlated with positivity and contamination rate. Eight hundred ninety (10.1%) patients in the FUBC group and 2263 (8.9%) patients in the no FUBC group died within 30 days. In the fully adjusted model, there was no association between FUBC and mortality (hazard ratio, 0.97; 95% CI, 0.90-1.04). Patients with FUBC had significantly longer length of stay (median, 11 vs. 7 days; adjusted risk ratio, 1.18; 95% CI, 1.16-1.21) and fewer number of days alive and out of hospital at 30 and 90 days., Discussion: FUBC collection in patients with GN-BSI varies widely across hospitals and may be associated with prolonged hospitalization without clear survival benefit. Residual confounding may be present given the observational design. Clear benefit should be demonstrated in a randomized trial before widespread adoption of routine FUBC., (Copyright © 2024 The Author(s). Published by Elsevier Ltd.. All rights reserved.)
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- 2024
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25. Evaluating the impact of a SIMPlified LaYered consent process on recruitment of potential participants to the Staphylococcus aureus Network Adaptive Platform trial: study protocol for a multicentre pragmatic nested randomised clinical trial (SIMPLY-SNAP trial).
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Ong SWX, Lee TC, Fowler RA, Mahar R, Pinto RL, Rishu A, Petrella L, Whiteway L, Cheng M, McDonald E, Johnstone J, Mertz D, Kandel C, Somayaji R, Davis JS, Tong SYC, and Daneman N
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- Humans, SARS-CoV-2, Informed Consent, Ontario, Treatment Outcome, Randomized Controlled Trials as Topic, Multicenter Studies as Topic, COVID-19, Staphylococcal Infections
- Abstract
Introduction: Informed consent forms (ICFs) for randomised clinical trials (RCTs) can be onerous and lengthy. The process has the potential to overwhelm patients with information, leading them to miss elements of the study that are critical for an informed decision. Specifically, overly long and complicated ICFs have the potential to increase barriers to trial participation for patients with mild cognitive impairment, those who do not speak English as a first language or among those with lower medical literacy. In turn, this can influence trial recruitment, completion and external validity., Methods and Analysis: SIMPLY-SNAP is a pragmatic, multicentre, open-label, two-arm parallel-group superiority RCT, nested within a larger trial, the Staphylococcus aureus Network Adaptive Platform (SNAP) trial. We will randomise potentially eligible participants of the SNAP trial 1:1 to a full-length ICF or a SIMPlified LaYered (SIMPLY) consent process where basic information is summarised with embedded hyperlinks to supplemental information and videos. The primary outcome is recruitment into the SNAP trial. Secondary outcomes include patient understanding of the clinical trial, patient and research staff satisfaction with the consent process, and time taken for consent. As an exploratory outcome, we will also compare measures of diversity (eg, gender, ethnicity), according to the consent process randomised to. The planned sample size will be 346 participants., Ethics and Dissemination: The study has been approved by the ethics review board (Sunnybrook Health Sciences Research Ethics Board) at sites in Ontario. We will disseminate study results via the SNAP trial group and other collaborating clinical trial networks., Trial Registration Number: ClinicalTrials.gov Registry (NCT06168474; www., Clinicaltrials: gov)., Competing Interests: Competing interests: None declared., (© Author(s) (or their employer(s)) 2024. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ.)
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- 2024
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26. Choosing the right outcomes in infectious diseases clinical research-putting patients front and centre.
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Ong SWX, Patel D, Reinblatt S, Tong SYC, Lee TC, McDonald EG, and Daneman N
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- Humans, Communicable Diseases diagnosis, Communicable Diseases therapy, Clostridium Infections
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- 2024
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27. Evaluating the use of fluorine-18 fluorodeoxyglucose positron emission tomography/computed tomography in the workup of Staphylococcus aureus bacteraemia: a cost-utility analysis.
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Ong SWX, Zhabokritsky A, Daneman N, Tong SYC, and Wijeysundera HC
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- Humans, Female, Male, Middle Aged, Aged, Markov Chains, Adult, Canada, Cost-Benefit Analysis, Staphylococcal Infections diagnostic imaging, Staphylococcal Infections diagnosis, Staphylococcal Infections economics, Positron Emission Tomography Computed Tomography economics, Positron Emission Tomography Computed Tomography methods, Fluorodeoxyglucose F18 economics, Bacteremia economics, Bacteremia diagnostic imaging, Bacteremia diagnosis, Bacteremia microbiology, Staphylococcus aureus isolation & purification, Quality-Adjusted Life Years
- Abstract
Objectives: The use of positron emission tomography/computed tomography (PET/CT) in the evaluation of patients with Staphylococcus aureus bacteraemia can improve the diagnosis of infectious foci and guide clinical management. We aimed to evaluate the cost-utility of PET/CT among adults hospitalized with Staphylococcus aureus bacteraemia., Methods: A cost-utility analysis was conducted from the healthcare payer perspective using a probabilistic Markov cohort model assessing three diagnostic strategies: (a) PET/CT in all patients, (b) PET/CT in high-risk patients only, and (c) routine diagnostic workup. Primary outcomes were quality-adjusted life years (QALYs), costs in Canadian dollars, and an incremental cost-effectiveness ratio. Deterministic and probabilistic sensitivity analyses were conducted to evaluate parameter uncertainty., Results: Routine workup resulted in an average of 16.64 QALYs from the time of diagnosis at a lifetime cost of $209 060/patient. This was dominated by PET/CT in high-risk patients (i.e. greater effectiveness at lower costs) with average 16.88 QALYs at a cost of $199 552. Compared with PET/CT in high-risk patients only, PET/CT for all patients cost on average $11 960 more but resulted in 0.14 more QALYs, giving an incremental cost-effectiveness ratio of $83 500 (cost per additional QALY gained); however, there was a high degree of uncertainty comparing these two strategies. At a willingness-to-pay threshold of $50 000/QALY, PET/CT in high-risk patients was the most cost-effective strategy in 58.6% of simulations vs. 37.9% for PET/CT in all patients., Discussion: Our findings suggest that a strategy of using PET/CT in high-risk patients is more cost-effective than no PET/CT. Randomized controlled trials should be conducted to evaluate the use of PET/CT in different patient groups., (Copyright © 2023 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.)
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- 2023
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28. Are we enrolling the right patients? A scoping review of external validity and generalizability of clinical trials in bloodstream infections.
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Ong SWX, Tong SYC, and Daneman N
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- Humans, Patient Selection, Bacteremia drug therapy, Sepsis mortality, Sepsis drug therapy, Randomized Controlled Trials as Topic
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Background: Having a representative population in randomized clinical trials (RCTs) improves external validity and generalizability of trial results. There are limited data examining differences between RCT-enrolled and real-world populations in bloodstream infections (BSI)., Objectives: We conducted a scoping review aiming to review studies assessing generalizability of BSI RCT populations, to identify sub-groups that have been systematically under-represented and to explore approaches to improve external validity of future RCTs., Sources: MEDLINE, Embase, and Cochrane Library databases were searched for terms related to external validity or generalizability, BSI, and clinical trials in papers published up to 1 August 2023. Studies comparing enrolled versus nonenrolled patients, or papers discussing external validity or generalizability in the context of BSI RCTs were included., Content: Sixteen papers were included in the final review. Five compared RCT-enrolled and nonenrolled participants from the same source population. There were significant differences between the two groups in all studies, with nonenrolled patients having a greater comorbidity burden and consistently worse outcomes including mortality. We identified several barriers to improving generalizability of RCT populations and outlined potential approaches to reduce these barriers, such as alternative/simplified consent processes, streamlining eligibility criteria and follow-up procedures, quota-based sampling techniques, and ensuring diversity in site and study team selection., Implications: Study cohorts in BSI RCTs are not representative of the general BSI patient population. As we increasingly adopt large pragmatic trials in infectious diseases, it is important to recognize the importance of maximizing generalizability to ensure that our research findings are of direct relevance to our patients., (Copyright © 2023 European Society of Clinical Microbiology and Infectious Diseases. Published by Elsevier Ltd. All rights reserved.)
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- 2023
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29. 'Evaluating the use of 18F-FDG PET/CT in the workup of Staphylococcus aureus bacteraemia: a cost-utility analysis'-Author's reply.
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Ong SWX, Zhabokritsky A, Daneman N, Tong SYC, and Wijeysundera HC
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- Humans, Staphylococcal Infections microbiology, Fluorodeoxyglucose F18, Positron Emission Tomography Computed Tomography economics, Bacteremia microbiology, Cost-Benefit Analysis, Staphylococcus aureus isolation & purification
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- 2023
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30. Unlocking the DOOR-how to design, apply, analyse, and interpret desirability of outcome ranking endpoints in infectious diseases clinical trials.
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Ong SWX, Petersiel N, Loewenthal MR, Daneman N, Tong SYC, and Davis JS
- Subjects
- Humans, Anti-Bacterial Agents therapeutic use, Communicable Diseases drug therapy
- Abstract
Background: Desirability of outcome ranking (DOOR) outcomes, with or without response adjusted for antibiotic risk (RADAR), are increasingly used in infectious diseases randomized clinical trials (RCTs), with the advantage of being able to combine multiple clinical outcomes and antibiotic duration in a single metric. However, it remains poorly understood, and there is considerable heterogeneity in its use., Objectives: In this scoping review, we explain how to design, use and analyse a DOOR endpoint, and highlight several pitfalls and potential improvements that can be made to DOOR/RADAR., Sources: The Ovid MEDLINE database was searched for terms related to DOOR in English-language articles published up to 31 December 2022. Articles discussing DOOR methodology and/or reporting clinical trial analyses (as either primary, secondary, or post-hoc analysis) using a DOOR outcome were included., Content: Seventeen articles were included in the final review, of which nine reported DOOR analyses of 12 RCTs. Eight articles discussed DOOR methodology. We synthesised information from these articles and discuss (a) how to develop a DOOR scale, (b) how to conduct a DOOR/RADAR analysis, (c) use in clinical trials, (d) use of alternative tiebreakers apart from RADAR, (e) partial credit analyses, and (f) criticisms and pitfalls of DOOR/RADAR., Implications: DOOR is an important innovation for RCTs in infectious diseases. We highlight potential areas of methodological improvement for future research. There remains considerable heterogeneity in its implementation, and further collaborative efforts, with a more diverse range of perspectives, should be made to develop consensus scales for use in prospective studies., (Copyright © 2023 European Society of Clinical Microbiology and Infectious Diseases. All rights reserved.)
- Published
- 2023
- Full Text
- View/download PDF
31. Heterologous mRNA vaccine boosters induce a stronger and longer-lasting antibody response against Omicron XBB variant.
- Author
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Tay MZ, Goh YS, Fong SW, Chang ZW, Rouers A, Wong N, Torres-Ruesta A, Huang Y, Selvam SK, Hor PX, Loh CY, Wang B, Mohd Salleh SN, Ngoh EZX, Lee RTC, Neo V, Kam IKJ, Poh XY, Rao S, Chia PY, Ong SWX, Lee TH, Lim C, Teo J, Maurer-Stroh S, Wang CI, Leo YS, Lin RTP, Lye DC, Young BE, Ng LFP, and Renia L
- Abstract
Competing Interests: A patent application for the SFB assay has been filed (Singapore patent #10202009679P: A Method Of Detecting Antibodies And Related Products) by Y.S.G., L.R., and L.F.P.N. All other authors declare no competing interests.
- Published
- 2023
- Full Text
- View/download PDF
32. Efficient recall of SARS-CoV-2 variant-reactive B cells and T responses in the elderly upon heterologous mRNA vaccines as boosters.
- Author
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Rouers A, Wong N, Goh YS, Torres-Ruesta A, Tay MZ, Chang ZW, Fong SW, Neo V, Kam IKJ, Yeo NK, Huang Y, Loh CY, Hor PX, Wong JXE, Tan YJ, Macary PA, Qian X, Bei W, Ngoh EZX, Salleh SNM, Wang CI, Poh XY, Rao S, Chia PY, Ong SWX, Lee TH, Lin RJH, Lim C, Teo J, Ren EC, Lye DC, Young BE, Ng LFP, and Renia L
- Subjects
- Aged, Humans, Middle Aged, BNT162 Vaccine, mRNA Vaccines, Antibodies, Neutralizing, Antibodies, Viral, Vaccination, SARS-CoV-2 genetics, COVID-19 prevention & control
- Abstract
Waning antibody levels against severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and the emergence of variants of concern highlight the need for booster vaccinations. This is particularly important for the elderly population, who are at a higher risk of developing severe coronavirus disease 2019 (COVID-19) disease. While studies have shown increased antibody responses following booster vaccination, understanding the changes in T and B cell compartments induced by a third vaccine dose remains limited. We analyzed the humoral and cellular responses in subjects who received either a homologous messenger RNA(mRNA) booster vaccine (BNT162b2 + BNT162b2 + BNT162b2; ''BBB") or a heterologous mRNA booster vaccine (BNT162b2 + BNT162b2 + mRNA-1273; ''BBM") at Day 0 (prebooster), Day 7, and Day 28 (postbooster). Compared with BBB, elderly individuals (≥60 years old) who received the BBM vaccination regimen display higher levels of neutralizing antibodies against the Wuhan and Delta strains along with a higher boost in immunoglobulin G memory B cells, particularly against the Omicron variant. Circulating T helper type 1(Th1), Th2, Th17, and T follicular helper responses were also increased in elderly individuals given the BBM regimen. While mRNA vaccines increase antibody, T cell, and B cell responses against SARS-CoV-2 1 month after receiving the third dose booster, the efficacy of the booster vaccine strategies may vary depending on age group and regimen combination., (© 2022 Wiley Periodicals LLC.)
- Published
- 2023
- Full Text
- View/download PDF
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