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1. Adeno-associated virus type 2 in US children with acute severe hepatitis

Author

Servellita, Venice, Sotomayor Gonzalez, Alicia, Lamson, Daryl M, Foresythe, Abiodun, Huh, Hee Jae, Bazinet, Adam L, Bergman, Nicholas H, Bull, Robert L, Garcia, Karla Y, Goodrich, Jennifer S, Lovett, Sean P, Parker, Kisha, Radune, Diana, Hatada, April, Pan, Chao-Yang, Rizzo, Kyle, Bertumen, J Bradford, Morales, Christina, Oluniyi, Paul E, Nguyen, Jenny, Tan, Jessica, Stryke, Doug, Jaber, Rayah, Leslie, Matthew T, Lyons, Zin, Hedman, Hayden D, Parashar, Umesh, Sullivan, Maureen, Wroblewski, Kelly, Oberste, M Steven, Tate, Jacqueline E, Baker, Julia M, Sugerman, David, Potts, Caelin, Lu, Xiaoyan, Chhabra, Preeti, Ingram, L Amanda, Shiau, Henry, Britt, William, Gutierrez Sanchez, Luz Helena, Ciric, Caroline, Rostad, Christina A, Vinjé, Jan, Kirking, Hannah L, Wadford, Debra A, Raborn, R Taylor, St. George, Kirsten, and Chiu, Charles Y

Subjects
Medical Microbiology, Biomedical and Clinical Sciences, Clinical Sciences, Hepatitis, Infectious Diseases, Genetics, Clinical Research, Liver Disease, Digestive Diseases, 2.1 Biological and endogenous factors, Aetiology, Infection, Good Health and Well Being, Child, Humans, Acute Disease, Adenovirus Infections, Human, Coinfection, Dependovirus, Epstein-Barr Virus Infections, Herpesvirus 4, Human, Herpesvirus 6, Human, Enterovirus A, Human, Helper Viruses, Pediatric Hepatitis of Unknown Etiology Working Group, General Science & Technology
Abstract

As of August 2022, clusters of acute severe hepatitis of unknown aetiology in children have been reported from 35 countries, including the USA1,2. Previous studies have found human adenoviruses (HAdVs) in the blood from patients in Europe and the USA3-7, although it is unclear whether this virus is causative. Here we used PCR testing, viral enrichment-based sequencing and agnostic metagenomic sequencing to analyse samples from 16 HAdV-positive cases from 1 October 2021 to 22 May 2022, in parallel with 113 controls. In blood from 14 cases, adeno-associated virus type 2 (AAV2) sequences were detected in 93% (13 of 14), compared to 4 (3.5%) of 113 controls (P

Published
2023

2. Metagenomic surveillance uncovers diverse and novel viral taxa in febrile patients from Nigeria

Author

Oguzie, Judith U., Petros, Brittany A., Oluniyi, Paul E., Mehta, Samar B., Eromon, Philomena E., Nair, Parvathy, Adewale-Fasoro, Opeoluwa, Ifoga, Peace Damilola, Odia, Ikponmwosa, Pastusiak, Andrzej, Gbemisola, Otitoola Shobi, Aiyepada, John Oke, Uyigue, Eghosasere Anthonia, Edamhande, Akhilomen Patience, Blessing, Osiemi, Airende, Michael, Tomkins-Tinch, Christopher, Qu, James, Stenson, Liam, Schaffner, Stephen F., Oyejide, Nicholas, Ajayi, Nnenna A., Ojide, Kingsley, Ogah, Onwe, Abejegah, Chukwuyem, Adedosu, Nelson, Ayodeji, Oluwafemi, Liasu, Ahmed A., Okogbenin, Sylvanus, Okokhere, Peter O., Park, Daniel J., Folarin, Onikepe A., Komolafe, Isaac, Ihekweazu, Chikwe, Frost, Simon D. W., Jackson, Ethan K., Siddle, Katherine J., Sabeti, Pardis C., and Happi, Christian T.

Published
2023
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3. Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria

Author

Olawoye, Idowu B., Oluniyi, Paul E., Oguzie, Judith U., Uwanibe, Jessica N., Kayode, Tolulope A., Olumade, Testimony J., Ajogbasile, Fehintola V., Parker, Edyth, Eromon, Philomena E., Abechi, Priscilla, Sobajo, Tope A., Ugwu, Chinedu A., George, Uwem E., Ayoade, Femi, Akano, Kazeem, Oyejide, Nicholas E., Nosamiefan, Iguosadolo, Fred-Akintunwa, Iyanuoluwa, Adedotun-Sulaiman, Kemi, Brimmo, Farida B., Adegboyega, Babatunde B., Philip, Courage, Adeleke, Richard A., Chukwu, Grace C., Ahmed, Muhammad I., Ope-Ewe, Oludayo O., Otitoola, Shobi G., Ogunsanya, Olusola A., Saibu, Mudasiru F., Sijuwola, Ayotunde E., Ezekiel, Grace O., John, Oluwagboadurami G., Akin-John, Julie O., Akinlo, Oluwasemilogo O., Fayemi, Olanrewaju O., Ipaye, Testimony O., Nwodo, Deborah C., Omoniyi, Abolade E., Omwanghe, Iyobosa B., Terkuma, Christabel A., Okolie, Johnson, Ayo-Ale, Olubukola, Ikponmwosa, Odia, Benevolence, Ebo, Naregose, Grace O., Patience, Akhilomen E., Blessing, Osiemi, Micheal, Airende, Jacqueline, Agbukor, Aiyepada, John O., Ebhodaghe, Paulson, Racheal, Omiunu, Rita, Esumeh, Rosemary, Giwa E., Solomon, Ehikhametalor, Anieno, Ekanem, Edna, Yerumoh, Chris, Aire O., Donatus, Adomeh I., Ogbaini-Emovon, Ephraim, Tatfeng, Mirabeau Y., Omunakwe, Hannah E., Bob-Manuel, Mienye, Ahmed, Rahaman A., Onwuamah, Chika K., Shaibu, Joseph O., Okwuraiwe, Azuka, Ataga, Anthony E., Bock-Oruma, Andrew, Daramola, Funmi, Yusuf, Ibrahim F., Fajola, Akinwumi, Ntia, Nsikak-Abasi, Ekpo, Julie J., Moses, Anietie E., Moore-Igwe, Beatrice W., Fakayode, Oluwatosin E., Akinola, Monilade, Kida, Ibrahim M., Oderinde, Bamidele S., Wudiri, Zara W., Adeyemi, Oluwapelumi O., Akanbi, Olusola A., Ahumibe, Anthony, Akinpelu, Afolabi, Ayansola, Oyeronke, Babatunde, Olajumoke, Omoare, Adesuyi A., Chukwu, Chimaobi, Mba, Nwando G., Omoruyi, Ewean C., Olisa, Olasunkanmi, Akande, Olatunji K., Nwafor, Ifeanyi E., Ekeh, Matthew A., Ndoma, Erim, Ewah, Richard L., Duruihuoma, Rosemary O., Abu, Augustine, Odeh, Elizabeth, Onyia, Venatius, Ojide, Chiedozie K., Okoro, Sylvanus, Igwe, Daniel, Ogah, Emeka O., Khan, Kamran, Ajayi, Nnennaya A., Ugwu, Collins N., Ukwaja, Kingsley N., Ugwu, Ngozi I., Abejegah, Chukwuyem, Adedosu, Nelson, Ayodeji, Olufemi, Liasu, Ahmed A., Isamotu, Rafiu O., Gadzama, Galadima, Petros, Brittany A., Siddle, Katherine J., Schaffner, Stephen F., Akpede, George, Erameh, Cyril Oshomah, Baba, Marycelin M., Oladiji, Femi, Audu, Rosemary, Ndodo, Nnaemeka, Fowotade, Adeola, Okogbenin, Sylvanus, Okokhere, Peter O., Park, Danny J., Mcannis, Bronwyn L., Adetifa, Ifedayo M., Ihekweazu, Chikwe, Salako, Babatunde L., Tomori, Oyewale, Happi, Anise N., Folarin, Onikepe A., Andersen, Kristian G., Sabeti, Pardis C., and Happi, Christian T.

Published
2023
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4. Lassa Virus Genetics

Author

Klitting, Raphaëlle, Mehta, Samar B., Oguzie, Judith U., Oluniyi, Paul E., Pauthner, Matthias G., Siddle, Katherine J., Andersen, Kristian G., Happi, Christian T., Sabeti, Pardis C., and Garry, Robert, editor

Published
2023
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5. Metagenomic sequencing characterizes a wide diversity of viruses in field mosquito samples in Nigeria

Author

Oguzie, Judith U., Nwangwu, Udoka C., Oluniyi, Paul E., Olumade, Testimony J., George, Uwem E., Kazeem, Akano, Bankole, Bolajoko E., Brimmo, Farida O., Asadu, Chukwuemeka C., Chukwuekezie, Okechukwu C., Ochu, Josephine C., Makwe, Catherine O., Dogunro, Festus A., Onwude, Cosmas O., Nwachukwu, William E., Ezihe, Ebuka K., Okonkwo, Gilkenny K., Umazi, Ndubuisi E., Maikere, Jacob, Agashi, Nneka O., Eloy, Emelda I., Anokwu, Stephen O., Okoronkwo, Angela I., Nwosu, Ebuka M., Etiki, Sandra O., Ngwu, Ifeoma M., Ihekweazu, Chikwe, Folarin, Onikepe A., Komolafe, Isaac O. O., and Happi, Christian T.

Published
2022
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6. Polymorphisms in Plasmodium falciparum chloroquine resistance transporter (Pfcrt) and multidrug-resistant gene 1 (Pfmdr-1) in Nigerian children 10 years post-adoption of artemisinin-based combination treatments

Author

Kayode, Adeyemi T., Akano, Kazeem, Ajogbasile, Fehintola V., Uwanibe, Jessica N., Oluniyi, Paul E., Bankole, Bolajoko E., Eromon, Philomena J., Sowunmi, Akintunde, Folarin, Onikepe A., Volkman, Sarah K., McInnis, Bronwyn, Sabeti, Pardis, Wirth, Dyann F., and Happi, Christian T.

Published
2021
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7. Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis

Author

Ajogbasile, Fehintola V., Kayode, Adeyemi T., Oluniyi, Paul E., Akano, Kazeem O., Uwanibe, Jessica N., Adegboyega, Benjamin B., Philip, Courage, John, Oluwagboadurami G., Eromon, Philomena J., Emechebe, George, Finimo, Finimo, Ogbulafor, Nnenna, Jiya, Nma, Okafor, Uche, Ambe, Jose, Wammanda, Robinson D., Oguche, Stephen, Mokuolu, Olugbenga A., Sowunmi, Akintunde, Folarin, Onikepe A., and Happi, Christian T.

Published
2021
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12. Lassa Virus Genetics

Author

Klitting, Raphaëlle, primary, Mehta, Samar B., additional, Oguzie, Judith U., additional, Oluniyi, Paul E., additional, Pauthner, Matthias G., additional, Siddle, Katherine J., additional, Andersen, Kristian G., additional, Happi, Christian T., additional, and Sabeti, Pardis C., additional

Published
2020
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13. Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

Author

Ajogbasile, Fehintola V., Oguzie, Judith U., Oluniyi, Paul E., Eromon, Philomena E., Uwanibe, Jessica N., Mehta, Samar B., Siddle, Katherine J., Odia, Ikponmwosa, Winnicki, Sarah M., Akpede, Nosa, Akpede, George, Okogbenin, Sylvanus, Ogbaini-Emovon, Ephraim, MacInnis, Bronwyn L., Folarin, Onikepe A., Modjarrad, Kayvon, Schaffner, Stephen F., Tomori, Oyewale, Ihekweazu, Chikwe, Sabeti, Pardis C., and Happi, Christian T.

Published
2020
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15. Emergence and spread of two SARS-CoV-2 variants of interest in Nigeria

Author

Olawoye, Idowu B., primary, Oluniyi, Paul E., additional, Oguzie, Judith U., additional, Uwanibe, Jessica N., additional, Kayode, Adeyemi T., additional, Olumade, Testimony J., additional, Ajogbasile, Fehintola V., additional, Parker, Edyth, additional, Eromon, Philomena E., additional, Abechi, Priscilla, additional, Sobajo, Tope, additional, Ugwu, Chinedu, additional, Uwem, George, additional, Ayoade, Femi, additional, Akano, Kazeem, additional, Oyejide, Nicholas, additional, Fred-Akintunwa, Iyanuoluwa, additional, Adedotun-Sulaiman, Kemi, additional, Brimmo, Farida, additional, Adegboyega, Benjamin, additional, Philip, Courage, additional, Adeleke, Ayomide, additional, Chukwu, Grace C., additional, Muhammad, Ahmed I., additional, Ope-ewe, Oludayo O., additional, Otitoola, Shobi, additional, Ogunsanya, Olusola A., additional, Saibu, Mudasiru F., additional, Sijuwola, Ayotunde E., additional, Ezekiel, Grace O., additional, John, Oluwagboadurami G., additional, Akin-John, Julie O., additional, Akinlo, Oluwasemilogo O., additional, Fayemi, Olanrewaju O., additional, Ipaye, Testimony O., additional, Nwodo, Deborah C., additional, Omoniyi, Abolade E., additional, Omwanghe, Iyobosa B., additional, Terkuma, Christabel A., additional, Okolie, Johnson, additional, Ayo-Ale, Olubukola, additional, Ikponmwosa, Odia, additional, Benevolence, Ebo, additional, Naregose, Okonofua, additional, Patience, Akhilomen, additional, Blessing, Osiemi, additional, Micheal, Airende, additional, Jacqueline, Agbukor, additional, John, Aiyepada, additional, Ebhodaghe, Paulson, additional, Racheal, Omiunu, additional, Rita, Esumeh, additional, Rosemary, Giwa, additional, Solomon, Ehikhametalor, additional, Anieno, Ekanem, additional, Edna, Yerumoh, additional, Chris, Aire, additional, Donatus, Adomeh, additional, Ogbaini, Ephraim, additional, Tatfeng, Mirabeau Y., additional, Omunakwe, Hannah E., additional, Bob-Manuel, Mienye, additional, Ahmed, Rahaman, additional, Onwuamah, Chika, additional, Shaibu, Joseph, additional, Okwuraiwe, Azuka, additional, Atage, Anthony E., additional, Bock-Oruma, Andrew, additional, Daramola, Funmi, additional, Fajola, Akinwumi, additional, Ntia, Nsikak-Abasi, additional, Ekpo, Julie J., additional, Moses, Anietie, additional, Moore-Igwe, Worbianueri B., additional, Yusuf, Ibrahim F., additional, Fakayode, Enoch O., additional, Akinola, Monilade, additional, Kida, Ibrahim, additional, Oderinde, Bamidele S., additional, Wudiri, Zara, additional, Adeyemi, Olufemi O., additional, Akanbi, Olusola, additional, Ahumibe, Anthony, additional, Akinpelu, Afolabi, additional, Ayansola, Oyeronke, additional, Babatunde, Olajumoke, additional, Omoare, Adesuyi, additional, Chukwu, Chimaobi, additional, Mba, Nwando, additional, Omoruyi, Ewean C., additional, Adeniji, Johnson A., additional, Adewunmi, Moses O., additional, Olayinka, Oluseyi, additional, Olasunkanmi, Olisa, additional, Akande, Olatunji, additional, Nwafor, Ifeanyi, additional, Ekeh, Matthew, additional, Ndoma, Erim, additional, Ewah, Richard, additional, Duruihuoma, Rosemary, additional, Abu, Augustine, additional, Odeh, Elizabeth, additional, Onyia, Venatious, additional, Ojide, Kingsley C., additional, Okoro, Sylvanus, additional, Igwe, Daniel, additional, Khan, Kamran, additional, Ajayi, Anthony N., additional, Ugwu, Ebhodaghe Ngozi, additional, Ugwu, Collins N., additional, Ukwuaja, Kingsley, additional, Ogah, Emeka O., additional, Abejegah, Chukwuyem, additional, Adedosu, Nelson, additional, Ayodeji, Olufemi, additional, Isamotu, Rafiu O., additional, Gadzama, Galadima, additional, Petros, Brittany, additional, Siddle, Katherine J., additional, Schaffner, Stephen, additional, Akpede, George, additional, Erameh, Cyril Oshomah, additional, Baba, Marycelin, additional, Oladiji, Femi, additional, Audu, Rosemary, additional, Ndodo, Nnaemeka, additional, Fowotade, Adeola, additional, Okogbenin, Sylvanus, additional, Okokhere, Peter, additional, Park, Danny, additional, Mcannis, Bronwyn, additional, Adetifa, Ifedayo, additional, Ihekweazu, Chikwe, additional, Salako, Babatunde L., additional, Tomori, Oyewale, additional, Happi, Anise N., additional, Folarin, Onikepe A., additional, Andersen, Kristian G., additional, Sabeti, Pardis C., additional, and Happi, Christian T., additional

Published
2022
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16. The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

Author

Tegally, Houriiyah, primary, San, James E., additional, Cotten, Matthew, additional, Tegomoh, Bryan, additional, Mboowa, Gerald, additional, Martin, Darren P., additional, Baxter, Cheryl, additional, Moir, Monika, additional, Lambisia, Arnold, additional, Diallo, Amadou, additional, Amoako, Daniel G., additional, Diagne, Moussa M., additional, Sisay, Abay, additional, Zekri, Abdel-Rahman N., additional, Barakat, Abdelhamid, additional, Gueye, Abdou Salam, additional, Sangare, Abdoul K., additional, Ouedraogo, Abdoul-Salam, additional, Sow, Abdourahmane, additional, Musa, Abdualmoniem O., additional, Sesay, Abdul K., additional, Lagare, Adamou, additional, Kemi, Adedotun-Sulaiman, additional, Abar, Aden Elmi, additional, Johnson, Adeniji A., additional, Fowotade, Adeola, additional, Olubusuyi, Adewumi M., additional, Oluwapelumi, Adeyemi O., additional, Amuri, Adrienne A., additional, Juru, Agnes, additional, Ramadan, Ahmad Mabrouk, additional, Kandeil, Ahmed, additional, Mostafa, Ahmed, additional, Rebai, Ahmed, additional, Sayed, Ahmed, additional, Kazeem, Akano, additional, Balde, Aladje, additional, Christoffels, Alan, additional, Trotter, Alexander J., additional, Campbell, Allan, additional, Keita, Alpha Kabinet, additional, Kone, Amadou, additional, Bouzid, Amal, additional, Souissi, Amal, additional, Agweyu, Ambrose, additional, Gutierrez, Ana V., additional, Page, Andrew J., additional, Yadouleton, Anges, additional, Vinze, Anika, additional, Happi, Anise N., additional, Chouikha, Anissa, additional, Iranzadeh, Arash, additional, Maharaj, Arisha, additional, Batchi-Bouyou, Armel Landry, additional, Ismail, Arshad, additional, Sylverken, Augustina, additional, Goba, Augustine, additional, Femi, Ayoade, additional, Sijuwola, Ayotunde Elijah, additional, Ibrahimi, Azeddine, additional, Marycelin, Baba, additional, Salako, Babatunde Lawal, additional, Oderinde, Bamidele S., additional, Bolajoko, Bankole, additional, Dhaala, Beatrice, additional, Herring, Belinda L., additional, Tsofa, Benjamin, additional, Mvula, Bernard, additional, Njanpop-Lafourcade, Berthe-Marie, additional, Marondera, Blessing T., additional, Khaireh, Bouh Abdi, additional, Kouriba, Bourema, additional, Adu, Bright, additional, Pool, Brigitte, additional, McInnis, Bronwyn, additional, Brook, Cara, additional, Williamson, Carolyn, additional, Anscombe, Catherine, additional, Pratt, Catherine B., additional, Scheepers, Cathrine, additional, Akoua-Koffi, Chantal G., additional, Agoti, Charles N., additional, Loucoubar, Cheikh, additional, Onwuamah, Chika Kingsley, additional, Ihekweazu, Chikwe, additional, Malaka, Christian Noël, additional, Peyrefitte, Christophe, additional, Omoruyi, Chukwuma Ewean, additional, Rafaï, Clotaire Donatien, additional, Morang’a, Collins M., additional, Nokes, D. James, additional, Lule, Daniel Bugembe, additional, Bridges, Daniel J., additional, Mukadi-Bamuleka, Daniel, additional, Park, Danny, additional, Baker, David, additional, Doolabh, Deelan, additional, Ssemwanga, Deogratius, additional, Tshiabuila, Derek, additional, Bassirou, Diarra, additional, Amuzu, Dominic S.Y., additional, Goedhals, Dominique, additional, Grant, Donald S., additional, Omuoyo, Donwilliams O., additional, Maruapula, Dorcas, additional, Wanjohi, Dorcas Waruguru, additional, Foster-Nyarko, Ebenezer, additional, Lusamaki, Eddy K., additional, Simulundu, Edgar, additional, Ong’era, Edidah M., additional, Ngabana, Edith N., additional, Abworo, Edward O., additional, Otieno, Edward, additional, Shumba, Edwin, additional, Barasa, Edwine, additional, Ahmed, El Bara, additional, Kampira, Elizabeth, additional, Fahime, Elmostafa El, additional, Lokilo, Emmanuel, additional, Mukantwari, Enatha, additional, Cyril, Erameh, additional, Philomena, Eromon, additional, Belarbi, Essia, additional, Simon-Loriere, Etienne, additional, Anoh, Etilé A., additional, Leendertz, Fabian, additional, Taweh, Fahn M., additional, Wasfi, Fares, additional, Abdelmoula, Fatma, additional, Takawira, Faustinos T., additional, Derrar, Fawzi, additional, Ajogbasile, Fehintola V, additional, Treurnicht, Florette, additional, Onikepe, Folarin, additional, Ntoumi, Francine, additional, Muyembe, Francisca M., additional, Ngiambudulu, Francisco, additional, Zongo Ragomzingba, Frank Edgard, additional, Dratibi, Fred Athanasius, additional, Iyanu, Fred-Akintunwa, additional, Mbunsu, Gabriel K., additional, Thilliez, Gaetan, additional, Kay, Gemma L., additional, Akpede, George O., additional, George, Uwem E., additional, van Zyl, Gert, additional, Awandare, Gordon A., additional, Schubert, Grit, additional, Maphalala, Gugu P., additional, Ranaivoson, Hafaliana C., additional, Lemriss, Hajar, additional, Omunakwe, Hannah E, additional, Onywera, Harris, additional, Abe, Haruka, additional, Karray, Hela, additional, Nansumba, Hellen, additional, Triki, Henda, additional, Adje Kadjo, Herve Albéric, additional, Elgahzaly, Hesham, additional, Gumbo, Hlanai, additional, mathieu, Hota, additional, Kavunga-Membo, Hugo, additional, Smeti, Ibtihel, additional, Olawoye, Idowu B., additional, Adetifa, Ifedayo, additional, Odia, Ikponmwosa, additional, Boubaker, Ilhem Boutiba-Ben, additional, Ssewanyana, Isaac, additional, Wurie, Isatta, additional, Konstantinus, Iyaloo S, additional, Afiwa Halatoko, Jacqueline Wemboo, additional, Ayei, James, additional, Sonoo, Janaki, additional, Lekana-Douki, Jean Bernard, additional, Makangara, Jean-Claude C., additional, Tamfum, Jean-Jacques M., additional, Heraud, Jean-Michel, additional, Shaffer, Jeffrey G., additional, Giandhari, Jennifer, additional, Musyoki, Jennifer, additional, Uwanibe, Jessica N., additional, Bhiman, Jinal N., additional, Yasuda, Jiro, additional, Morais, Joana, additional, Mends, Joana Q., additional, Kiconco, Jocelyn, additional, Sandi, John Demby, additional, Huddleston, John, additional, Odoom, John Kofi, additional, Morobe, John M., additional, Gyapong, John O., additional, Kayiwa, John T., additional, Okolie, Johnson C., additional, Xavier, Joicymara Santos, additional, Gyamfi, Jones, additional, Kofi Bonney, Joseph Humphrey, additional, Nyandwi, Joseph, additional, Everatt, Josie, additional, Farah, Jouali, additional, Nakaseegu, Joweria, additional, Ngoi, Joyce M., additional, Namulondo, Joyce, additional, Oguzie, Judith U., additional, Andeko, Julia C., additional, Lutwama, Julius J., additional, O’Grady, Justin, additional, Siddle, Katherine J, additional, Victoir, Kathleen, additional, Adeyemi, Kayode T., additional, Tumedi, Kefentse A., additional, Carvalho, Kevin Sanders, additional, Mohammed, Khadija Said, additional, Musonda, Kunda G., additional, Duedu, Kwabena O., additional, Belyamani, Lahcen, additional, Fki-Berrajah, Lamia, additional, Singh, Lavanya, additional, Biscornet, Leon, additional, de Oliveira Martins, Leonardo, additional, Chabuka, Lucious, additional, Olubayo, Luicer, additional, Deng, Lul Lojok, additional, Ochola-Oyier, Lynette Isabella, additional, Mine, Madisa, additional, Ramuth, Magalutcheemee, additional, Mastouri, Maha, additional, ElHefnawi, Mahmoud, additional, Mbanne, Maimouna, additional, Matsheka, Maitshwarelo I., additional, Kebabonye, Malebogo, additional, Diop, Mamadou, additional, Momoh, Mambu, additional, Lima Mendonça, Maria da Luz, additional, Venter, Marietjie, additional, Paye, Marietou F, additional, Faye, Martin, additional, Nyaga, Martin M., additional, Mareka, Mathabo, additional, Damaris, Matoke-Muhia, additional, Mburu, Maureen W., additional, Mpina, Maximillian, additional, Claujens Chastel, Mfoutou Mapanguy, additional, Owusu, Michael, additional, Wiley, Michael R., additional, Tatfeng, Mirabeau Youtchou, additional, Ayekaba, Mitoha Ondo’o, additional, Abouelhoda, Mohamed, additional, Beloufa, Mohamed Amine, additional, Seadawy, Mohamed G, additional, Khalifa, Mohamed K., additional, Dellagi, Mohammed Koussai, additional, Matobo, Mooko Marethabile, additional, Kane, Mouhamed, additional, Ouadghiri, Mouna, additional, Salou, Mounerou, additional, Mbulawa, Mphaphi B., additional, Saibu, Mudashiru Femi, additional, Mwenda, Mulenga, additional, Kaba, Muluken, additional, Phan, My V.T., additional, Abid, Nabil, additional, Touil, Nadia, additional, Rujeni, Nadine, additional, Ismael, Nalia, additional, Top, Ndeye Marieme, additional, Dia, Ndongo, additional, Mabunda, Nédio, additional, Hsiao, Nei-yuan, additional, Silochi, Nelson Boricó, additional, Saasa, Ngonda, additional, Bbosa, Nicholas, additional, Murunga, Nickson, additional, Gumede, Nicksy, additional, Wolter, Nicole, additional, Sitharam, Nikita, additional, Ndodo, Nnaemeka, additional, Ajayi, Nnennaya A., additional, Tordo, Noël, additional, Mbhele, Nokuzola, additional, Razanajatovo, Norosoa H, additional, Iguosadolo, Nosamiefan, additional, Mba, Nwando, additional, Kingsley, Ojide C., additional, Sylvanus, Okogbenin, additional, Peter, Okokhere, additional, Femi, Oladiji, additional, Testimony, Olumade, additional, Ogunsanya, Olusola Akinola, additional, Fakayode, Oluwatosin, additional, Ogah, Onwe E., additional, Faye, Ousmane, additional, Smith-Lawrence, Pamela, additional, Ondoa, Pascale, additional, Combe, Patrice, additional, Nabisubi, Patricia, additional, Semanda, Patrick, additional, Oluniyi, Paul E., additional, Arnaldo, Paulo, additional, Quashie, Peter Kojo, additional, Bejon, Philip, additional, Dussart, Philippe, additional, Bester, Phillip A., additional, Mbala, Placide K., additional, Kaleebu, Pontiano, additional, Abechi, Priscilla, additional, El-Shesheny, Rabeh, additional, Joseph, Rageema, additional, Aziz, Ramy Karam, additional, Essomba, René Ghislain, additional, Ayivor-Djanie, Reuben, additional, Njouom, Richard, additional, Phillips, Richard O., additional, Gorman, Richmond, additional, Kingsley, Robert A., additional, Audu, Rosemary, additional, Carr, Rosina A.A., additional, Kabbaj, Saâd El, additional, Gargouri, Saba, additional, Masmoudi, Saber, additional, Sankhe, Safietou, additional, Mohamed, Sahra Isse, additional, Mhalla, Salma, additional, Hosch, Salome, additional, Kassim, Samar Kamal, additional, Metha, Samar, additional, Trabelsi, Sameh, additional, Lemriss, Sanaâ, additional, Agwa, Sara Hassan, additional, Mwangi, Sarah Wambui, additional, Doumbia, Seydou, additional, Makiala-Mandanda, Sheila, additional, Aryeetey, Sherihane, additional, Ahmed, Shymaa S., additional, Ahmed, Sidi Mohamed, additional, Elhamoumi, Siham, additional, Moyo, Sikhulile, additional, Lutucuta, Silvia, additional, Gaseitsiwe, Simani, additional, Jalloh, Simbirie, additional, Andriamandimby, Soafy, additional, Oguntope, Sobajo, additional, Grayo, Solène, additional, Lekana-Douki, Sonia, additional, Prosolek, Sophie, additional, Ouangraoua, Soumeya, additional, van Wyk, Stephanie, additional, Schaffner, Stephen F., additional, Kanyerezi, Stephen, additional, Ahuka-Mundeke, Steve, additional, Rudder, Steven, additional, Pillay, Sureshnee, additional, Nabadda, Susan, additional, Behillil, Sylvie, additional, Budiaki, Sylvie L., additional, van der Werf, Sylvie, additional, Mashe, Tapfumanei, additional, Aanniz, Tarik, additional, Mohale, Thabo, additional, Le-Viet, Thanh, additional, Velavan, Thirumalaisamy P., additional, Schindler, Tobias, additional, Maponga, Tongai, additional, Bedford, Trevor, additional, Anyaneji, Ugochukwu J., additional, Chinedu, Ugwu, additional, Ramphal, Upasana, additional, Enouf, Vincent, additional, Nene, Vishvanath, additional, Gorova, Vivianne, additional, Roshdy, Wael H., additional, Karim, Wasim Abdul, additional, Ampofo, William K., additional, Preiser, Wolfgang, additional, Choga, Wonderful T., additional, Ahmed, Yahaya Ali, additional, Ramphal, Yajna, additional, Bediako, Yaw, additional, Naidoo, Yeshnee, additional, Butera, Yvan, additional, de Laurent, Zaydah R., additional, Ouma, Ahmed E.O., additional, von Gottberg, Anne, additional, Githinji, George, additional, Moeti, Matshidiso, additional, Tomori, Oyewale, additional, Sabeti, Pardis C., additional, Sall, Amadou A., additional, Oyola, Samuel O., additional, Tebeje, Yenew K., additional, Tessema, Sofonias K., additional, de Oliveira, Tulio, additional, Happi, Christian, additional, Lessells, Richard, additional, Nkengasong, John, additional, and Wilkinson, Eduan, additional

Published
2022
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17. Molecular profiling of the artemisinin resistance Kelch 13 gene in Plasmodium falciparum from Nigeria

Author

Ajogbasile, Fehintola V., primary, Oluniyi, Paul E., additional, Kayode, Adeyemi T., additional, Akano, Kazeem O., additional, Adegboyega, Benjamin B., additional, Philip, Courage, additional, Ogbulafor, Nnenna, additional, Okafor, Henrietta U., additional, Oguche, Stephen, additional, Wammanda, Robinson D., additional, Mokuolu, Olugbenga A., additional, Folarin, Onikepe A., additional, and Happi, Christian T., additional

Published
2022
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18. Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package

Author

Griffiths, Emma J, primary, Timme, Ruth E, additional, Mendes, Catarina Inês, additional, Page, Andrew J, additional, Alikhan, Nabil-Fareed, additional, Fornika, Dan, additional, Maguire, Finlay, additional, Campos, Josefina, additional, Park, Daniel, additional, Olawoye, Idowu B, additional, Oluniyi, Paul E, additional, Anderson, Dominique, additional, Christoffels, Alan, additional, da Silva, Anders Gonçalves, additional, Cameron, Rhiannon, additional, Dooley, Damion, additional, Katz, Lee S, additional, Black, Allison, additional, Karsch-Mizrachi, Ilene, additional, Barrett, Tanya, additional, Johnston, Anjanette, additional, Connor, Thomas R, additional, Nicholls, Samuel M, additional, Witney, Adam A, additional, Tyson, Gregory H, additional, Tausch, Simon H, additional, Raphenya, Amogelang R, additional, Alcock, Brian, additional, Aanensen, David M, additional, Hodcroft, Emma, additional, Hsiao, William W L, additional, Vasconcelos, Ana Tereza R, additional, and MacCannell, Duncan R, additional

Published
2022
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19. A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

Author

Wilkinson, Eduan, primary, Giovanetti, Marta, additional, Tegally, Houriiyah, additional, San, James E., additional, Lessells, Richard, additional, Cuadros, Diego, additional, Martin, Darren P., additional, Rasmussen, David A., additional, Zekri, Abdel-Rahman N., additional, Sangare, Abdoul K., additional, Ouedraogo, Abdoul-Salam, additional, Sesay, Abdul K., additional, Priscilla, Abechi, additional, Kemi, Adedotun-Sulaiman, additional, Olubusuyi, Adewunmi M., additional, Oluwapelumi, Adeyemi O. O., additional, Hammami, Adnène, additional, Amuri, Adrienne A., additional, Sayed, Ahmad, additional, Ouma, Ahmed E. O., additional, Elargoubi, Aida, additional, Ajayi, Nnennaya A., additional, Victoria, Ajogbasile F., additional, Kazeem, Akano, additional, George, Akpede, additional, Trotter, Alexander J., additional, Yahaya, Ali A., additional, Keita, Alpha K., additional, Diallo, Amadou, additional, Kone, Amadou, additional, Souissi, Amal, additional, Chtourou, Amel, additional, Gutierrez, Ana V., additional, Page, Andrew J., additional, Vinze, Anika, additional, Iranzadeh, Arash, additional, Lambisia, Arnold, additional, Ismail, Arshad, additional, Rosemary, Audu, additional, Sylverken, Augustina, additional, Femi, Ayoade, additional, Ibrahimi, Azeddine, additional, Marycelin, Baba, additional, Oderinde, Bamidele S., additional, Bolajoko, Bankole, additional, Dhaala, Beatrice, additional, Herring, Belinda L., additional, Njanpop-Lafourcade, Berthe-Marie, additional, Kleinhans, Bronwyn, additional, McInnis, Bronwyn, additional, Tegomoh, Bryan, additional, Brook, Cara, additional, Pratt, Catherine B., additional, Scheepers, Cathrine, additional, Akoua-Koffi, Chantal G., additional, Agoti, Charles N., additional, Peyrefitte, Christophe, additional, Daubenberger, Claudia, additional, Morang’a, Collins M., additional, Nokes, D. James, additional, Amoako, Daniel G., additional, Bugembe, Daniel L., additional, Park, Danny, additional, Baker, David, additional, Doolabh, Deelan, additional, Ssemwanga, Deogratius, additional, Tshiabuila, Derek, additional, Bassirou, Diarra, additional, Amuzu, Dominic S. Y., additional, Goedhals, Dominique, additional, Omuoyo, Donwilliams O., additional, Maruapula, Dorcas, additional, Foster-Nyarko, Ebenezer, additional, Lusamaki, Eddy K., additional, Simulundu, Edgar, additional, Ong’era, Edidah M., additional, Ngabana, Edith N., additional, Shumba, Edwin, additional, El Fahime, Elmostafa, additional, Lokilo, Emmanuel, additional, Mukantwari, Enatha, additional, Philomena, Eromon, additional, Belarbi, Essia, additional, Simon-Loriere, Etienne, additional, Anoh, Etilé A., additional, Leendertz, Fabian, additional, Ajili, Faida, additional, Enoch, Fakayode O., additional, Wasfi, Fares, additional, Abdelmoula, Fatma, additional, Mosha, Fausta S., additional, Takawira, Faustinos T., additional, Derrar, Fawzi, additional, Bouzid, Feriel, additional, Onikepe, Folarin, additional, Adeola, Fowotade, additional, Muyembe, Francisca M., additional, Tanser, Frank, additional, Dratibi, Fred A., additional, Mbunsu, Gabriel K., additional, Thilliez, Gaetan, additional, Kay, Gemma L., additional, Githinji, George, additional, van Zyl, Gert, additional, Awandare, Gordon A., additional, Schubert, Grit, additional, Maphalala, Gugu P., additional, Ranaivoson, Hafaliana C., additional, Lemriss, Hajar, additional, Anise, Happi, additional, Abe, Haruka, additional, Karray, Hela H., additional, Nansumba, Hellen, additional, Elgahzaly, Hesham A., additional, Gumbo, Hlanai, additional, Smeti, Ibtihel, additional, Ayed, Ikhlas B., additional, Odia, Ikponmwosa, additional, Ben Boubaker, Ilhem Boutiba, additional, Gaaloul, Imed, additional, Gazy, Inbal, additional, Mudau, Innocent, additional, Ssewanyana, Isaac, additional, Konstantinus, Iyaloo, additional, Lekana-Douk, Jean B., additional, Makangara, Jean-Claude C., additional, Tamfum, Jean-Jacques M., additional, Heraud, Jean-Michel, additional, Shaffer, Jeffrey G., additional, Giandhari, Jennifer, additional, Li, Jingjing, additional, Yasuda, Jiro, additional, Mends, Joana Q., additional, Kiconco, Jocelyn, additional, Morobe, John M., additional, Gyapong, John O., additional, Okolie, Johnson C., additional, Kayiwa, John T., additional, Edwards, Johnathan A., additional, Gyamfi, Jones, additional, Farah, Jouali, additional, Nakaseegu, Joweria, additional, Ngoi, Joyce M., additional, Namulondo, Joyce, additional, Andeko, Julia C., additional, Lutwama, Julius J., additional, O’Grady, Justin, additional, Siddle, Katherine, additional, Adeyemi, Kayode T., additional, Tumedi, Kefentse A., additional, Said, Khadija M., additional, Hae-Young, Kim, additional, Duedu, Kwabena O., additional, Belyamani, Lahcen, additional, Fki-Berrajah, Lamia, additional, Singh, Lavanya, additional, Martins, Leonardo de O., additional, Tyers, Lynn, additional, Ramuth, Magalutcheemee, additional, Mastouri, Maha, additional, Aouni, Mahjoub, additional, el Hefnawi, Mahmoud, additional, Matsheka, Maitshwarelo I., additional, Kebabonye, Malebogo, additional, Diop, Mamadou, additional, Turki, Manel, additional, Paye, Marietou, additional, Nyaga, Martin M., additional, Mareka, Mathabo, additional, Damaris, Matoke-Muhia, additional, Mburu, Maureen W., additional, Mpina, Maximillian, additional, Nwando, Mba, additional, Owusu, Michael, additional, Wiley, Michael R., additional, Youtchou, Mirabeau T., additional, Ayekaba, Mitoha O., additional, Abouelhoda, Mohamed, additional, Seadawy, Mohamed G., additional, Khalifa, Mohamed K., additional, Sekhele, Mooko, additional, Ouadghiri, Mouna, additional, Diagne, Moussa M., additional, Mwenda, Mulenga, additional, Allam, Mushal, additional, Phan, My V. T., additional, Abid, Nabil, additional, Touil, Nadia, additional, Rujeni, Nadine, additional, Kharrat, Najla, additional, Ismael, Nalia, additional, Dia, Ndongo, additional, Mabunda, Nedio, additional, Hsiao, Nei-yuan, additional, Silochi, Nelson B., additional, Nsenga, Ngoy, additional, Gumede, Nicksy, additional, Mulder, Nicola, additional, Ndodo, Nnaemeka, additional, Razanajatovo, Norosoa H, additional, Iguosadolo, Nosamiefan, additional, Judith, Oguzie, additional, Kingsley, Ojide C., additional, Sylvanus, Okogbenin, additional, Peter, Okokhere, additional, Femi, Oladiji, additional, Idowu, Olawoye, additional, Testimony, Olumade, additional, Chukwuma, Omoruyi E., additional, Ogah, Onwe E., additional, Onwuamah, Chika K., additional, Cyril, Oshomah, additional, Faye, Ousmane, additional, Tomori, Oyewale, additional, Ondoa, Pascale, additional, Combe, Patrice, additional, Semanda, Patrick, additional, Oluniyi, Paul E., additional, Arnaldo, Paulo, additional, Quashie, Peter K., additional, Dussart, Philippe, additional, Bester, Phillip A., additional, Mbala, Placide K., additional, Ayivor-Djanie, Reuben, additional, Njouom, Richard, additional, Phillips, Richard O., additional, Gorman, Richmond, additional, Kingsley, Robert A., additional, Carr, Rosina A. A., additional, El Kabbaj, Saâd, additional, Gargouri, Saba, additional, Masmoudi, Saber, additional, Sankhe, Safietou, additional, Lawal, Salako B., additional, Kassim, Samar, additional, Trabelsi, Sameh, additional, Metha, Samar, additional, Kammoun, Sami, additional, Lemriss, Sanaâ, additional, Agwa, Sara H. A., additional, Calvignac-Spencer, Sébastien, additional, Schaffner, Stephen F., additional, Doumbia, Seydou, additional, Mandanda, Sheila M., additional, Aryeetey, Sherihane, additional, Ahmed, Shymaa S., additional, Elhamoumi, Siham, additional, Andriamandimby, Soafy, additional, Tope, Sobajo, additional, Lekana-Douki, Sonia, additional, Prosolek, Sophie, additional, Ouangraoua, Soumeya, additional, Mundeke, Steve A., additional, Rudder, Steven, additional, Panji, Sumir, additional, Pillay, Sureshnee, additional, Engelbrecht, Susan, additional, Nabadda, Susan, additional, Behillil, Sylvie, additional, Budiaki, Sylvie L., additional, van der Werf, Sylvie, additional, Mashe, Tapfumanei, additional, Aanniz, Tarik, additional, Mohale, Thabo, additional, Le-Viet, Thanh, additional, Schindler, Tobias, additional, Anyaneji, Ugochukwu J., additional, Chinedu, Ugwu, additional, Ramphal, Upasana, additional, Jessica, Uwanibe, additional, George, Uwem, additional, Fonseca, Vagner, additional, Enouf, Vincent, additional, Gorova, Vivianne, additional, Roshdy, Wael H., additional, Ampofo, William K., additional, Preiser, Wolfgang, additional, Choga, Wonderful T., additional, Bediako, Yaw, additional, Naidoo, Yeshnee, additional, Butera, Yvan, additional, de Laurent, Zaydah R., additional, Sall, Amadou A., additional, Rebai, Ahmed, additional, von Gottberg, Anne, additional, Kouriba, Bourema, additional, Williamson, Carolyn, additional, Bridges, Daniel J., additional, Chikwe, Ihekweazu, additional, Bhiman, Jinal N., additional, Mine, Madisa, additional, Cotten, Matthew, additional, Moyo, Sikhulile, additional, Gaseitsiwe, Simani, additional, Saasa, Ngonda, additional, Sabeti, Pardis C., additional, Kaleebu, Pontiano, additional, Tebeje, Yenew K., additional, Tessema, Sofonias K., additional, Happi, Christian, additional, Nkengasong, John, additional, and de Oliveira, Tulio, additional

Published
2021
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21. VGEA: an RNA viral assembly toolkit

Author

Oluniyi, Paul E., primary, Ajogbasile, Fehintola, additional, Oguzie, Judith, additional, Uwanibe, Jessica, additional, Kayode, Adeyemi, additional, Happi, Anise, additional, Ugwu, Alphonsus, additional, Olumade, Testimony, additional, Ogunsanya, Olusola, additional, Eromon, Philomena Ehiaghe, additional, Folarin, Onikepe, additional, Frost, Simon D.W., additional, Heeney, Jonathan, additional, and Happi, Christian T., additional

Published
2021
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22. The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response

Author

Botti-Lodovico, Yolanda, primary, Nair, Parvathy, additional, Nosamiefan, Dolo, additional, Stremlau, Matthew, additional, Schaffner, Stephen, additional, Agignoae, Sebastian V., additional, Aiyepada, John Oke, additional, Ajogbasile, Fehintola V., additional, Akpede, George O., additional, Alhasan, Foday, additional, Andersen, Kristian G., additional, Asogun, Danny A., additional, Ayodeji, Oladele Oluwafemi, additional, Badiane, Aida S., additional, Barnes, Kayla, additional, Bauer, Matthew R., additional, Bell-Kareem, Antoinette, additional, Benard, Muoebonam Ekene, additional, Benevolence, Ebo Ohomoime, additional, Blessing, Osiemi, additional, Boehm, Chloe K., additional, Boisen, Matthew L., additional, Bond, Nell G., additional, Branco, Luis M., additional, Butts, Michael J., additional, Carter, Amber, additional, Colubri, Andres, additional, Deme, Awa B., additional, DeRuff, Katherine C., additional, Diédhiou, Younousse, additional, Edamhande, Akhilomen Patience, additional, Elhamoumi, Siham, additional, Engel, Emily J., additional, Eromon, Philomena, additional, Fallah, Mosoka, additional, Folarin, Onikepe A., additional, Fry, Ben, additional, Garry, Robert, additional, Gaye, Amy, additional, Gbakie, Michael, additional, Gevao, Sahr M., additional, Gionet, Gabrielle, additional, Gladden-Young, Adrianne, additional, Goba, Augustine, additional, Gomis, Jules Francois, additional, Happi, Anise N., additional, Houghton, Mary, additional, Ihekwuazu, Chikwe, additional, Iruolagbe, Christopher Ojemiega, additional, Jackson, Jonathan, additional, Jalloh, Simbirie, additional, Johnson, Jeremy, additional, Kanneh, Lansana, additional, Kayode, Adeyemi, additional, Kemball, Molly, additional, Kingsley, Ojide Chiedozie, additional, Koroma, Veronica, additional, Kotliar, Dylan, additional, Mehta, Samar, additional, Metsky, Hayden C., additional, Michael, Airende, additional, Mirhashemi, Marzieh Ezzaty, additional, Modjarrad, Kayvon, additional, Momoh, Mambu, additional, Myhrvold, Cameron A., additional, Naregose, Okonofua Grace, additional, Ndiaye, Tolla, additional, Ndiaye, Mouhamadou, additional, Ndiaye, Aliou, additional, Normandin, Erica, additional, Odia, Ikponmwosa, additional, Oguzie, Judith Uche, additional, Okogbenin, Sylvanus A., additional, Okokhere, Peter O., additional, Okolie, Johnson, additional, Olawoye, Idowu B., additional, Olumade, Testimony J., additional, Oluniyi, Paul E., additional, Omoregie, Omigie, additional, Park, Daniel J., additional, Paye, Mariétou Faye, additional, Petros, Brittany, additional, Philippakis, Anthony A., additional, Priscilla, Abechi, additional, Ricks, Alan, additional, Rimoin, Anne, additional, Sandi, John Demby, additional, Schieffelin, John S., additional, Schreiber, Monica, additional, Seck, Mame Cheikh, additional, Siddiqui, Sameed, additional, Siddle, Katherine, additional, Smither, Allison R., additional, Sy, Mouhamad, additional, Sy, Ngayo, additional, Tomkins-Tinch, Christopher H., additional, Tomori, Oyewale, additional, Ugwu, Chinedu, additional, Uwanibe, Jessica N., additional, Uyigue, Eghosasere Anthonia, additional, Victoria, Dada Ireti, additional, Vinzé, Anika, additional, Vodzak, Megan E., additional, Welch, Nicole, additional, Wurie, Haja Isatta, additional, Zoumarou, Daba, additional, Grant, Donald S., additional, Ndiaye, Daouda, additional, MacInnis, Bronwyn, additional, Sabeti, Pardis C., additional, and Happi, Christian, additional

Published
2021
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23. Additional file 1 of Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis

Author

Fehintola V. Ajogbasile, Adeyemi T. Kayode, Oluniyi, Paul E., Kazeem O. Akano, Uwanibe, Jessica N., Adegboyega, Benjamin B., Courage Philip, Oluwagboadurami G. John, Eromon, Philomena J., Emechebe, George, Finimo Finimo, Nnenna Ogbulafor, Nma Jiya, Uche Okafor, Ambe, Jose, Robinson D. Wammanda, Oguche, Stephen, Olugbenga A. Mokuolu, Akintunde Sowunmi, Onikepe A. Folarin, and Happi, Christian T.

Abstract

Additional file 1. Shows the Number of different and effective alleles in parasite populations according to study location.

Published
2021
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24. Additional file 3 of Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis

Author

Fehintola V. Ajogbasile, Adeyemi T. Kayode, Oluniyi, Paul E., Kazeem O. Akano, Uwanibe, Jessica N., Adegboyega, Benjamin B., Courage Philip, Oluwagboadurami G. John, Eromon, Philomena J., Emechebe, George, Finimo Finimo, Nnenna Ogbulafor, Nma Jiya, Uche Okafor, Ambe, Jose, Robinson D. Wammanda, Oguche, Stephen, Olugbenga A. Mokuolu, Akintunde Sowunmi, Onikepe A. Folarin, and Happi, Christian T.

Abstract

Additional file 3. Shows expected heterozygosity (He) values of microsatellite loci from parasite populations in the nine States.

Published
2021
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25. Additional file 2 of Genetic diversity and population structure of Plasmodium falciparum in Nigeria: insights from microsatellite loci analysis

Author

Fehintola V. Ajogbasile, Adeyemi T. Kayode, Oluniyi, Paul E., Kazeem O. Akano, Uwanibe, Jessica N., Adegboyega, Benjamin B., Courage Philip, Oluwagboadurami G. John, Eromon, Philomena J., Emechebe, George, Finimo Finimo, Nnenna Ogbulafor, Nma Jiya, Uche Okafor, Ambe, Jose, Robinson D. Wammanda, Oguche, Stephen, Olugbenga A. Mokuolu, Akintunde Sowunmi, Onikepe A. Folarin, and Happi, Christian T.

Abstract

Additional file 2. Shows the allelic richness values in parasite populations per microsatellite loci.

Published
2021
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26. The Origins and Future of Sentinel: An Early-Warning System for Pandemic Preemption and Response

Author

Harvard University--MIT Division of Health Sciences and Technology, Botti-Lodovico, Yolanda, Nair, Parvathy, Nosamiefan, Dolo, Stremlau, Matthew, Schaffner, Stephen, Agignoae, Sebastian V., Aiyepada, John Oke, Ajogbasile, Fehintola V., Akpede, George O., Alhasan, Foday, Andersen, Kristian G., Asogun, Danny A., Ayodeji, Oladele Oluwafemi, Badiane, Aida S., Barnes, Kayla, Bauer, Matthew R., Bell-Kareem, Antoinette, Benard, Muoebonam Ekene, Benevolence, Ebo Ohomoime, Blessing, Osiemi, Boehm, Chloe K., Boisen, Matthew L., Bond, Nell G., Branco, Luis M., Butts, Michael J., Carter, Amber, Colubri, Andres, Deme, Awa B., DeRuff, Katherine C., Diédhiou, Younousse, Edamhande, Akhilomen Patience, Elhamoumi, Siham, Engel, Emily J., Eromon, Philomena, Fallah, Mosoka, Folarin, Onikepe A., Fry, Ben, Garry, Robert, Gaye, Amy, Gbakie, Michael, Gevao, Sahr M., Gionet, Gabrielle, Gladden-Young, Adrianne, Goba, Augustine, Gomis, Jules Francois, Happi, Anise N., Houghton, Mary, Ihekwuazu, Chikwe, Iruolagbe, Christopher Ojemiega, Jackson, Jonathan, Jalloh, Simbirie, Johnson, Jeremy, Kanneh, Lansana, Kayode, Adeyemi, Kemball, Molly, Kingsley, Ojide Chiedozie, Koroma, Veronica, Kotliar, Dylan, Mehta, Samar, Metsky, Hayden C., Michael, Airende, Mirhashemi, Marzieh Ezzaty, Modjarrad, Kayvon, Momoh, Mambu, Myhrvold, Cameron A., Naregose, Okonofua Grace, Ndiaye, Tolla, Ndiaye, Mouhamadou, Ndiaye, Aliou, Normandin, Erica, Odia, Ikponmwosa, Oguzie, Judith Uche, Okogbenin, Sylvanus A., Okokhere, Peter O., Okolie, Johnson, Olawoye, Idowu B., Olumade, Testimony J., Oluniyi, Paul E., Omoregie, Omigie, Park, Daniel J., Paye, Mariétou Faye, Petros, Brittany A., Philippakis, Anthony A., Priscilla, Abechi, Ricks, Alan, Rimoin, Anne, Sandi, John Demby, Schieffelin, John S., Schreiber, Monica, Seck, Mame Cheikh, Siddiqui, Sameed, Siddle, Katherine, Smither, Allison R., Sy, Mouhamad, Sy, Ngayo, Tomkins-Tinch, Christopher H., Tomori, Oyewale, Ugwu, Chinedu, Uwanibe, Jessica N., Uyigue, Eghosasere Anthonia, Victoria, Dada Ireti, Vinzé, Anika, Vodzak, Megan E., Welch, Nicole, Wurie, Haja Isatta, Zoumarou, Daba, Grant, Donald S., Ndiaye, Daouda, MacInnis, Bronwyn, Sabeti, Pardis C., Happi, Christian, Harvard University--MIT Division of Health Sciences and Technology, Botti-Lodovico, Yolanda, Nair, Parvathy, Nosamiefan, Dolo, Stremlau, Matthew, Schaffner, Stephen, Agignoae, Sebastian V., Aiyepada, John Oke, Ajogbasile, Fehintola V., Akpede, George O., Alhasan, Foday, Andersen, Kristian G., Asogun, Danny A., Ayodeji, Oladele Oluwafemi, Badiane, Aida S., Barnes, Kayla, Bauer, Matthew R., Bell-Kareem, Antoinette, Benard, Muoebonam Ekene, Benevolence, Ebo Ohomoime, Blessing, Osiemi, Boehm, Chloe K., Boisen, Matthew L., Bond, Nell G., Branco, Luis M., Butts, Michael J., Carter, Amber, Colubri, Andres, Deme, Awa B., DeRuff, Katherine C., Diédhiou, Younousse, Edamhande, Akhilomen Patience, Elhamoumi, Siham, Engel, Emily J., Eromon, Philomena, Fallah, Mosoka, Folarin, Onikepe A., Fry, Ben, Garry, Robert, Gaye, Amy, Gbakie, Michael, Gevao, Sahr M., Gionet, Gabrielle, Gladden-Young, Adrianne, Goba, Augustine, Gomis, Jules Francois, Happi, Anise N., Houghton, Mary, Ihekwuazu, Chikwe, Iruolagbe, Christopher Ojemiega, Jackson, Jonathan, Jalloh, Simbirie, Johnson, Jeremy, Kanneh, Lansana, Kayode, Adeyemi, Kemball, Molly, Kingsley, Ojide Chiedozie, Koroma, Veronica, Kotliar, Dylan, Mehta, Samar, Metsky, Hayden C., Michael, Airende, Mirhashemi, Marzieh Ezzaty, Modjarrad, Kayvon, Momoh, Mambu, Myhrvold, Cameron A., Naregose, Okonofua Grace, Ndiaye, Tolla, Ndiaye, Mouhamadou, Ndiaye, Aliou, Normandin, Erica, Odia, Ikponmwosa, Oguzie, Judith Uche, Okogbenin, Sylvanus A., Okokhere, Peter O., Okolie, Johnson, Olawoye, Idowu B., Olumade, Testimony J., Oluniyi, Paul E., Omoregie, Omigie, Park, Daniel J., Paye, Mariétou Faye, Petros, Brittany A., Philippakis, Anthony A., Priscilla, Abechi, Ricks, Alan, Rimoin, Anne, Sandi, John Demby, Schieffelin, John S., Schreiber, Monica, Seck, Mame Cheikh, Siddiqui, Sameed, Siddle, Katherine, Smither, Allison R., Sy, Mouhamad, Sy, Ngayo, Tomkins-Tinch, Christopher H., Tomori, Oyewale, Ugwu, Chinedu, Uwanibe, Jessica N., Uyigue, Eghosasere Anthonia, Victoria, Dada Ireti, Vinzé, Anika, Vodzak, Megan E., Welch, Nicole, Wurie, Haja Isatta, Zoumarou, Daba, Grant, Donald S., Ndiaye, Daouda, MacInnis, Bronwyn, Sabeti, Pardis C., and Happi, Christian

Abstract

While investigating a signal of adaptive evolution in humans at the gene LARGE, we encountered an intriguing finding by Dr. Stefan Kunz that the gene plays a critical role in Lassa virus binding and entry. This led us to pursue field work to test our hypothesis that natural selection acting on LARGE—detected in the Yoruba population of Nigeria—conferred resistance to Lassa Fever in some West African populations. As we delved further, we conjectured that the “emerging” nature of recently discovered diseases like Lassa fever is related to a newfound capacity for detection, rather than a novel viral presence, and that humans have in fact been exposed to the viruses that cause such diseases for much longer than previously suspected. Dr. Stefan Kunz’s critical efforts not only laid the groundwork for this discovery, but also inspired and catalyzed a series of events that birthed Sentinel, an ambitious and large-scale pandemic prevention effort in West Africa. Sentinel aims to detect and characterize deadly pathogens before they spread across the globe, through implementation of its three fundamental pillars: Detect, Connect, and Empower. More specifically, Sentinel is designed to detect known and novel infections rapidly, connect and share information in real time to identify emerging threats, and empower the public health community to improve pandemic preparedness and response anywhere in the world. We are proud to dedicate this work to Stefan Kunz, and eagerly invite new collaborators, experts, and others to join us in our efforts.

Published
2021

28. Genetic Diversity and Population Structure of Plasmodium Falciparum in Nigeria: Insights From Microsatellites Loci Analysis

Author

Ajogbasile, Fehintola Victoria, primary, Kayode, Adeyemi T., additional, Akano, Kazeem O., additional, Oluniyi, Paul E., additional, Uwanibe, Jessica N., additional, Adegboyega, Benjamin B., additional, Philip, Courage, additional, John, Oluwagboadurami G., additional, Eromon, Philomena J., additional, Emechebe, George, additional, Finimo, Finimo, additional, Ogbulafor, Nnenna, additional, Jiya, Nma, additional, Okafor, Uche, additional, Ambe, Jose, additional, Wammanda, Robinson D., additional, Oguche, Stephen, additional, Mokuolu, Olugbenga A., additional, Sowunmi, Akintunde, additional, Folarin, Onikepe A., additional, and Happi, Christian T., additional

Published
2020
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29. The PHA4GE SARS-CoV-2 Contextual Data Specification for Open Genomic Epidemiology

Author

Griffiths, Emma J., primary, Timme, Ruth E., additional, Page, Andrew J., additional, Alikhan, Nabil-Fareed, additional, Fornika, Dan, additional, Maguire, Finlay, additional, Mendes, Catarina Inês, additional, Tausch, Simon H., additional, Black, Allison, additional, Connor, Thomas R., additional, Tyson, Gregory H., additional, Aanensen, David M., additional, Alcock, Brian, additional, Campos, Josefina, additional, Christoffels, Alan, additional, Gonçalves da Silva, Anders, additional, Hodcroft, Emma, additional, Hsiao, William W.L., additional, Katz, Lee S., additional, Nicholls, Samuel M., additional, Oluniyi, Paul E., additional, Olawoye, Idowu B., additional, Raphenya, Amogelang R., additional, Vasconcelos, Ana Tereza R., additional, Witney, Adam A., additional, and MacCannell, Duncan R., additional

Published
2020
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31. Real-time Metagenomic Analysis of Undiagnosed Fever Cases Unveils a Yellow Fever Outbreak in Edo State, Nigeria

Author

Ajogbasile, Fehintola V., primary, Oguzie, Judith U., additional, Oluniyi, Paul E., additional, Eromon, Philomena, additional, Uwanibe, Jessica, additional, Mehta, Samar B., additional, Siddle, Katherine J., additional, Odia, Ikponmwosa, additional, Winnicki, Sarah M., additional, Akpede, Nosa, additional, Akpede, George, additional, Okogbenin, Sylvanus, additional, MacInnis, Bronwyn L., additional, Folarin, Onikepe A., additional, Schaffner, Stephen F., additional, Ogbaini-Emovon, Ephraim, additional, Tomori, Oyewale, additional, Ihekweazu, Chikwe, additional, Sabeti, Pardis C., additional, and Happi, Christian T., additional

Published
2019
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32. The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance.

Author

Tegally H, San JE, Cotten M, Moir M, Tegomoh B, Mboowa G, Martin DP, Baxter C, Lambisia AW, Diallo A, Amoako DG, Diagne MM, Sisay A, Zekri AN, Gueye AS, Sangare AK, Ouedraogo AS, Sow A, Musa AO, Sesay AK, Abias AG, Elzagheid AI, Lagare A, Kemi AS, Abar AE, Johnson AA, Fowotade A, Oluwapelumi AO, Amuri AA, Juru A, Kandeil A, Mostafa A, Rebai A, Sayed A, Kazeem A, Balde A, Christoffels A, Trotter AJ, Campbell A, Keita AK, Kone A, Bouzid A, Souissi A, Agweyu A, Naguib A, Gutierrez AV, Nkeshimana A, Page AJ, Yadouleton A, Vinze A, Happi AN, Chouikha A, Iranzadeh A, Maharaj A, Batchi-Bouyou AL, Ismail A, Sylverken AA, Goba A, Femi A, Sijuwola AE, Marycelin B, Salako BL, Oderinde BS, Bolajoko B, Diarra B, Herring BL, Tsofa B, Lekana-Douki B, Mvula B, Njanpop-Lafourcade BM, Marondera BT, Khaireh BA, Kouriba B, Adu B, Pool B, McInnis B, Brook C, Williamson C, Nduwimana C, Anscombe C, Pratt CB, Scheepers C, Akoua-Koffi CG, Agoti CN, Mapanguy CM, Loucoubar C, Onwuamah CK, Ihekweazu C, Malaka CN, Peyrefitte C, Grace C, Omoruyi CE, Rafaï CD, Morang'a CM, Erameh C, Lule DB, Bridges DJ, Mukadi-Bamuleka D, Park D, Rasmussen DA, Baker D, Nokes DJ, Ssemwanga D, Tshiabuila D, Amuzu DSY, Goedhals D, Grant DS, Omuoyo DO, Maruapula D, Wanjohi DW, Foster-Nyarko E, Lusamaki EK, Simulundu E, Ong'era EM, Ngabana EN, Abworo EO, Otieno E, Shumba E, Barasa E, Ahmed EB, Ahmed EA, Lokilo E, Mukantwari E, Philomena E, Belarbi E, Simon-Loriere E, Anoh EA, Manuel E, Leendertz F, Taweh FM, Wasfi F, Abdelmoula F, Takawira FT, Derrar F, Ajogbasile FV, Treurnicht F, Onikepe F, Ntoumi F, Muyembe FM, Ragomzingba FEZ, Dratibi FA, Iyanu FA, Mbunsu GK, Thilliez G, Kay GL, Akpede GO, van Zyl GU, Awandare GA, Kpeli GS, Schubert G, Maphalala GP, Ranaivoson HC, Omunakwe HE, Onywera H, Abe H, Karray H, Nansumba H, Triki H, Kadjo HAA, Elgahzaly H, Gumbo H, Mathieu H, Kavunga-Membo H, Smeti I, Olawoye IB, Adetifa IMO, Odia I, Ben Boubaker IB, Muhammad IA, Ssewanyana I, Wurie I, Konstantinus IS, Halatoko JWA, Ayei J, Sonoo J, Makangara JC, Tamfum JM, Heraud JM, Shaffer JG, Giandhari J, Musyoki J, Nkurunziza J, Uwanibe JN, Bhiman JN, Yasuda J, Morais J, Kiconco J, Sandi JD, Huddleston J, Odoom JK, Morobe JM, Gyapong JO, Kayiwa JT, Okolie JC, Xavier JS, Gyamfi J, Wamala JF, Bonney JHK, Nyandwi J, Everatt J, Nakaseegu J, Ngoi JM, Namulondo J, Oguzie JU, Andeko JC, Lutwama JJ, Mogga JJH, O'Grady J, Siddle KJ, Victoir K, Adeyemi KT, Tumedi KA, Carvalho KS, Mohammed KS, Dellagi K, Musonda KG, Duedu KO, Fki-Berrajah L, Singh L, Kepler LM, Biscornet L, de Oliveira Martins L, Chabuka L, Olubayo L, Ojok LD, Deng LL, Ochola-Oyier LI, Tyers L, Mine M, Ramuth M, Mastouri M, ElHefnawi M, Mbanne M, Matsheka MI, Kebabonye M, Diop M, Momoh M, Lima Mendonça MDL, Venter M, Paye MF, Faye M, Nyaga MM, Mareka M, Damaris MM, Mburu MW, Mpina MG, Owusu M, Wiley MR, Tatfeng MY, Ayekaba MO, Abouelhoda M, Beloufa MA, Seadawy MG, Khalifa MK, Matobo MM, Kane M, Salou M, Mbulawa MB, Mwenda M, Allam M, Phan MVT, Abid N, Rujeni N, Abuzaid N, Ismael N, Elguindy N, Top NM, Dia N, Mabunda N, Hsiao NY, Silochi NB, Francisco NM, Saasa N, Bbosa N, Murunga N, Gumede N, Wolter N, Sitharam N, Ndodo N, Ajayi NA, Tordo N, Mbhele N, Razanajatovo NH, Iguosadolo N, Mba N, Kingsley OC, Sylvanus O, Femi O, Adewumi OM, Testimony O, Ogunsanya OA, Fakayode O, Ogah OE, Oludayo OE, Faye O, Smith-Lawrence P, Ondoa P, Combe P, Nabisubi P, Semanda P, Oluniyi PE, Arnaldo P, Quashie PK, Okokhere PO, Bejon P, Dussart P, Bester PA, Mbala PK, Kaleebu P, Abechi P, El-Shesheny R, Joseph R, Aziz RK, Essomba RG, Ayivor-Djanie R, Njouom R, Phillips RO, Gorman R, Kingsley RA, Neto Rodrigues RMDESA, Audu RA, Carr RAA, Gargouri S, Masmoudi S, Bootsma S, Sankhe S, Mohamed SI, Femi S, Mhalla S, Hosch S, Kassim SK, Metha S, Trabelsi S, Agwa SH, Mwangi SW, Doumbia S, Makiala-Mandanda S, Aryeetey S, Ahmed SS, Ahmed SM, Elhamoumi S, Moyo S, Lutucuta S, Gaseitsiwe S, Jalloh S, Andriamandimby SF, Oguntope S, Grayo S, Lekana-Douki S, Prosolek S, Ouangraoua S, van Wyk S, Schaffner SF, Kanyerezi S, Ahuka-Mundeke S, Rudder S, Pillay S, Nabadda S, Behillil S, Budiaki SL, van der Werf S, Mashe T, Mohale T, Le-Viet T, Velavan TP, Schindler T, Maponga TG, Bedford T, Anyaneji UJ, Chinedu U, Ramphal U, George UE, Enouf V, Nene V, Gorova V, Roshdy WH, Karim WA, Ampofo WK, Preiser W, Choga WT, Ahmed YA, Ramphal Y, Bediako Y, Naidoo Y, Butera Y, de Laurent ZR, Ouma AEO, von Gottberg A, Githinji G, Moeti M, Tomori O, Sabeti PC, Sall AA, Oyola SO, Tebeje YK, Tessema SK, de Oliveira T, Happi C, Lessells R, Nkengasong J, and Wilkinson E

Subjects
Africa epidemiology, Genomics, Humans, COVID-19 epidemiology, COVID-19 virology, Epidemiological Monitoring, Pandemics, SARS-CoV-2 genetics
Abstract

Investment in severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing in Africa over the past year has led to a major increase in the number of sequences that have been generated and used to track the pandemic on the continent, a number that now exceeds 100,000 genomes. Our results show an increase in the number of African countries that are able to sequence domestically and highlight that local sequencing enables faster turnaround times and more-regular routine surveillance. Despite limitations of low testing proportions, findings from this genomic surveillance study underscore the heterogeneous nature of the pandemic and illuminate the distinct dispersal dynamics of variants of concern-particularly Alpha, Beta, Delta, and Omicron-on the continent. Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve while the continent faces many emerging and reemerging infectious disease threats. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century.

Published
2022
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