60 results on '"Olga Stepankova"'
Search Results
2. Perspectives on Open Science and The Future of Scholarly Communication: Internet Trackers and Algorithmic Persuasion
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Tiberius Ignat, Paul Ayris, Beatrice Gini, Olga Stepankova, Deniz Özdemir, Damla Bal, and Yordanka Deyanova
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scholarly communication ,track ,persuade ,readers ,authors ,open science ,Bibliography. Library science. Information resources - Abstract
The current digital content industry is heavily oriented towards building platforms that track users’ behaviour and seek to convince them to stay longer and come back sooner onto the platform. Similarly, authors are incentivised to publish more and to become champions of dissemination. Arguably, these incentive systems are built around public reputation supported by a system of metrics, hard to be assessed. Generally, the digital content industry is permeable to non-human contributors (algorithms that are able to generate content and reactions), anonymity and identity fraud. It is pertinent to present a perspective paper about early signs of track and persuasion in scholarly communication. Building our views, we have run a pilot study to determine the opportunity for conducting research about the use of “track and persuade” technologies in scholarly communication. We collected observations on a sample of 148 relevant websites and we interviewed 15 that are experts related to the field. Through this work, we tried to identify 1) the essential questions that could inspire proper research, 2) good practices to be recommended for future research, and 3) whether citizen science is a suitable approach to further research in this field. The findings could contribute to determining a broader solution for building trust and infrastructure in scholarly communication. The principles of Open Science will be used as a framework to see if they offer insights into this work going forward.
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- 2021
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3. Cholinergic white matter pathways make a stronger contribution to attention and memory in normal aging than cerebrovascular health and nucleus basalis of Meynert
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Milan Nemy, Nira Cedres, Michel J. Grothe, J-Sebastian Muehlboeck, Olof Lindberg, Zuzana Nedelska, Olga Stepankova, Lenka Vyslouzilova, Maria Eriksdotter, José Barroso, Stefan Teipel, Eric Westman, and Daniel Ferreira
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Cholinergic system ,Basal forebrain ,Normal aging ,Small vessel disease ,Cognition ,Magnetic resonance imaging ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
The integrity of the cholinergic system plays a central role in cognitive decline both in normal aging and neurological disorders including Alzheimer’s disease and vascular cognitive impairment. Most of the previous neuroimaging research has focused on the integrity of the cholinergic basal forebrain, or its sub-region the nucleus basalis of Meynert (NBM). Tractography using diffusion tensor imaging data may enable modelling of the NBM white matter projections. We investigated the contribution of NBM volume, NBM white matter projections, small vessel disease (SVD), and age to performance in attention and memory in 262 cognitively normal individuals (39–77 years of age, 53% female). We developed a multimodal MRI pipeline for NBM segmentation and diffusion-based tracking of NBM white matter projections, and computed white matter hypointensities (WM-hypo) as a marker of SVD. We successfully tracked pathways that closely resemble the spatial layout of the cholinergic system as seen in previous post-mortem and DTI tractography studies. We found that high WM-hypo load was associated with older age, male sex, and lower performance in attention and memory. A high WM-hypo load was also associated with lower integrity of the cholinergic system above and beyond the effect of age. In a multivariate model, age and integrity of NBM white matter projections were stronger contributors than WM-hypo load and NBM volume to performance in attention and memory. We conclude that the integrity of NBM white matter projections plays a fundamental role in cognitive aging. This and other modern neuroimaging methods offer new opportunities to re-evaluate the cholinergic hypothesis of cognitive aging.
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- 2020
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4. Artificial Intelligence and Women Researchers in the Czech Republic
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Lenka Lhotska and Olga Stepankova
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artificial intelligence ,machine learning ,women ,research ,Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Biology (General) ,QH301-705.5 ,Physics ,QC1-999 ,Chemistry ,QD1-999 - Abstract
Artificial intelligence as a research area has been continuously growing for several decades. Many applications were developed in various domains. Medicine and health care have attracted more intensive attention thanks to rapid technological development that has accelerated generation of large volumes of data requiring intelligent analysis and evaluation. This article illustrates, through examples of women researchers and selected AI projects in medicine, the wide spectrum of applications developed during the last fifteen years in the Czech Republic, and in particular at the Czech Technical University in Prague. Women researchers played an important and irreplaceable role since the advent of AI research in the Czech Republic. By their example, they motivated many young female students to join the community and start their research career in the AI area. They frequently participated in research projects led by the senior women researchers. The presented overview of projects illustrates the diversity of the medical area and the potential of AI methods that can be used for solving data- and knowledge-intensive problems. We briefly touch on the AI study programs. In conclusion, we point out the future challenges in AI and its applications in medicine and health care.
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- 2022
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5. Tissue specific electrochemical fingerprinting.
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Pavlina Sobrova, Lenka Vyslouzilova, Olga Stepankova, Marketa Ryvolova, Jiri Anyz, Libuse Trnkova, Vojtech Adam, Jaromir Hubalek, and Rene Kizek
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Medicine ,Science - Abstract
BACKGROUND: Proteomics and metalloproteomics are rapidly developing interdisciplinary fields providing enormous amounts of data to be classified, evaluated and interpreted. Approaches offered by bioinformatics and also by biostatistical data analysis and treatment are therefore of extreme interest. Numerous methods are now available as commercial or open source tools for data processing and modelling ready to support the analysis of various datasets. The analysis of scientific data remains a big challenge, because each new task sets its specific requirements and constraints that call for the design of a targeted data pre-processing approach. METHODOLOGY/PRINCIPAL FINDINGS: This study proposes a mathematical approach for evaluating and classifying datasets obtained by electrochemical analysis of metallothionein in rat 9 tissues (brain, heart, kidney, eye, spleen, gonad, blood, liver and femoral muscle). Tissue extracts were heated and then analysed using the differential pulse voltammetry Brdicka reaction. The voltammograms were subsequently processed. Classification models were designed making separate use of two groups of attributes, namely attributes describing local extremes, and derived attributes resulting from the level=5 wavelet transform. CONCLUSIONS/SIGNIFICANCE: On the basis of our results, we were able to construct a decision tree that makes it possible to distinguish among electrochemical analysis data resulting from measurements of all the considered tissues. In other words, we found a way to classify an unknown rat tissue based on electrochemical analysis of the metallothionein in this tissue.
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- 2012
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6. Cholinergic white matter pathways along the Alzheimer's disease continuum
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Milan Nemy, Martin Dyrba, Frederic Brosseron, Katharina Buerger, Peter Dechent, Laura Dobisch, Michael Ewers, Klaus Fliessbach, Wenzel Glanz, Doreen Goerss, Michael T Heneka, Stefan Hetzer, Enise I Incesoy, Daniel Janowitz, Ingo Kilimann, Christoph Laske, Franziska Maier, Matthias H Munk, Robert Perneczky, Oliver Peters, Lukas Preis, Josef Priller, Boris-Stephan Rauchmann, Sandra Röske, Nina Roy, Klaus Scheffler, Anja Schneider, Björn H Schott, Annika Spottke, Eike J Spruth, Michael Wagner, Jens Wiltfang, Renat Yakupov, Maria Eriksdotter, Eric Westman, Olga Stepankova, Lenka Vyslouzilova, Emrah Düzel, Frank Jessen, Stefan J Teipel, and Daniel Ferreira
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cerebrospinal fluid markers ,magnetic resonance imaging ,ddc:610 ,Neurology (clinical) ,cholinergic system ,Alzheimer’s disease ,nucleus basalis of Meynert - Abstract
Previous studies have shown that the cholinergic nucleus basalis of Meynert and its white matter projections are affected in Alzheimer’s disease dementia and mild cognitive impairment. However, it is still unknown whether these alterations can be found in individuals with subjective cognitive decline, and whether they are more pronounced than changes found in conventional brain volumetric measurements. To address these questions, we investigated microstructural alterations of two major cholinergic pathways in individuals along the Alzheimer’s disease continuum using an in vivo model of the human cholinergic system based on neuroimaging. We included 402 participants (52 Alzheimer’s disease, 66 mild cognitive impairment, 172 subjective cognitive decline and 112 healthy controls) from the Deutsches Zentrum für Neurodegenerative Erkrankungen Longitudinal Cognitive Impairment and Dementia Study. We modelled the cholinergic white matter pathways with an enhanced diffusion neuroimaging pipeline that included probabilistic fibre-tracking methods and prior anatomical knowledge. The integrity of the cholinergic white matter pathways was compared between stages of the Alzheimer’s disease continuum, in the whole cohort and in a CSF amyloid-beta stratified subsample. The discriminative power of the integrity of the pathways was compared to the conventional volumetric measures of hippocampus and nucleus basalis of Meynert, using a receiver operating characteristics analysis. A multivariate model was used to investigate the role of these pathways in relation to cognitive performance. We found that the integrity of the cholinergic white matter pathways was significantly reduced in all stages of the Alzheimer’s disease continuum, including individuals with subjective cognitive decline. The differences involved posterior cholinergic white matter in the subjective cognitive decline stage and extended to anterior frontal white matter in mild cognitive impairment and Alzheimer’s disease dementia stages. Both cholinergic pathways and conventional volumetric measures showed higher predictive power in the more advanced stages of the disease, i.e. mild cognitive impairment and Alzheimer’s disease dementia. In contrast, the integrity of cholinergic pathways was more informative in distinguishing subjective cognitive decline from healthy controls, as compared with the volumetric measures. The multivariate model revealed a moderate contribution of the cholinergic white matter pathways but not of volumetric measures towards memory tests in the subjective cognitive decline and mild cognitive impairment stages. In conclusion, we demonstrated that cholinergic white matter pathways are altered already in subjective cognitive decline individuals, preceding the more widespread alterations found in mild cognitive impairment and Alzheimer’s disease. The integrity of the cholinergic pathways identified the early stages of Alzheimer’s disease better than conventional volumetric measures such as hippocampal volume or volume of cholinergic nucleus basalis of Meynert.
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- 2022
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7. Design and implementation framework of social assistive robotics for people with dementia - a scoping review
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Olga Stepankova, Iva Holmerová, Jaroslav Cibulka, and Deniz Ozdemir
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020205 medical informatics ,Biomedical Engineering ,Bioengineering ,02 engineering and technology ,Standard of living ,medicine.disease ,Applied Microbiology and Biotechnology ,Field (computer science) ,03 medical and health sciences ,0302 clinical medicine ,Multidisciplinary approach ,Order (exchange) ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,Dementia ,Robot ,Engineering ethics ,030212 general & internal medicine ,Sociology ,Assistive robotics ,Humanoid robot ,Biotechnology - Abstract
Nowadays, longevity studies have become a distinguished multidisciplinary field merging with cutting-edge computer science technologies to outline innovative ideas to cater to the needs of seniors. Since the global geriatric population is anticipated to rise, the number of people seeking to obtain caregiving services and wishing to be more actively engaged in life will be more apparent. Therefore, seniors aspiring day-to-day special care in home settings, interested in improving their living standards can likewise benefit from an amiable companion. A comprehensive search strategy was developed and selected databases were looked through with relevant keywords. This scoping review qualitatively examines the literature on the use of companion robots, including both pet-like and humanoid robots, and Internet-of-Things (IoT) security, coupled with the new 5G technology for the home-based elder care. From 355 full-text articles that were found, 90 articles were selected to be investigated respectively. In order to ascertain their operation in the future, we discuss remaining challenges, unused opportunities, security risks and suggested remedies and suggest a dementia-centred concept and an implementation framework.
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- 2021
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8. On updating the data warehouse from multiple data sources
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ZdenĚk, Kouba, Kamil, Matoušek, Petr, Mikšovský, Olga, štĚpánková, Goos, Gerhard, editor, Hartmanis, Juris, editor, van Leeuwen, Jan, editor, Quirchmayr, Gerald, editor, Schweighofer, Erich, editor, and Bench-Capon, Trevor J.M., editor
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- 1998
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9. The association of Alzheimer’s disease and cerebrovascular disease biomarkers towards the neurodegeneration of the cholinergic pathways
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Nira Cedres, Daniel Ferreira, Milan Nemy, Alejandra Machado, Joana B. Pereira, Lars‐Olof Wahlund, Anna Zettergren, Stefan J. Teipel, Michel J. Grothe, Maria Eriksdotter, Olga Stepankova, Lenka Vyslouzilova, Kaj Blennow, Henrik Zetterberg, Silke Kern, Ingmar Skoog, and Eric Westman
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Psychiatry and Mental health ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Epidemiology ,Health Policy ,Neurology (clinical) ,Geriatrics and Gerontology - Published
- 2021
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10. Bioimpedance, Total Body Water and Phase Angle of Preschool Czech Children: Preliminary Study
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Olga Stepankova, Lenka Vyslouzilova, Lenka Lhotska, J. Hlubik, and Jan Kriz
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Czech ,Empirical equations ,medicine.medical_specialty ,business.industry ,Phase angle ,Cohort ,Body water ,language ,medicine ,Audiology ,business ,language.human_language ,Hydration status - Abstract
This study is a presentation of our ongoing process of obtaining body composition and electrical parameters from sufficient cohort of normal healthy children in Czech Republic that are currently not known. At the moment, 37 children have been fully measured and their parameters evaluated. The measured group consisted of 17 boys and 20 girls and their age was 5 to 6 years. Results are showing that hydration status and electrical parameters of children are approximately the same in the time of leave and in the time of arrival kindergarten. However, changes that are reported through all measurements indicate some specific behavior of bioelectrical values during children day cycle. Bioimpedance seems to act as a possible marker, that can describe in future body composition in another perspective than classical body composition parameters. Further work is needed to obtain sufficient cohort of normal healthy children and to be able to estimate new electrical parameters that may be used as reliable predictors of a health status of the child without using empirical equations or BMI.
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- 2019
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11. Management of Physiological Data Streams within Brain Disorder Rehabilitation
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Peter Brezany, Olga Stepankova, Miroslav Uller, Marketa Janatova, Radim Burget, Marek Lenart, and Michael Edward
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010302 applied physics ,Data stream ,Telemedicine ,Rehabilitation ,Scope (project management) ,Data stream mining ,Process (engineering) ,Computer science ,business.industry ,medicine.medical_treatment ,Cloud computing ,02 engineering and technology ,01 natural sciences ,Visualization ,Human–computer interaction ,0103 physical sciences ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,020201 artificial intelligence & image processing ,InformationSystems_MISCELLANEOUS ,business - Abstract
This paper developes a novel telemedicine solution for rehabilitation of balance disorders based on analysis and visualization of patient physiological data gathered by a set of sensors during the rehabilitation process. The training and physiological data sensing are based on two home-grown systems called Homebalance and Scope. The kernel functionality is implemented by the data stream management technology provided by the Esper system. Moreover, it supports training at homes integrated together and to specialized rehabilitation centers by the Dew/Cloud technology. A small core of early adopters is currently successfully conducting balance disorder rehabilitation according to methodology relying on the proposed approach.
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- 2019
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12. Design of Neuromorphic Cognitive Module based on Hierarchical Temporal Memory and Demonstrated on Anomaly Detection
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Michal Najman, Marek Otáhal, and Olga Stepankova
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Computer science ,Interface (computing) ,cognitive module ,Sensory system ,neuromorphic ,02 engineering and technology ,Machine learning ,computer.software_genre ,03 medical and health sciences ,0302 clinical medicine ,Cognitive module ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,BCI ,General Environmental Science ,Neocortex ,Artificial neural network ,business.industry ,hierarchical temporal memory ,human enhancement ,Human brain ,anomaly detection ,Hierarchical temporal memory ,medicine.anatomical_structure ,Neuromorphic engineering ,Asynchronous communication ,General Earth and Planetary Sciences ,020201 artificial intelligence & image processing ,Anomaly detection ,Artificial intelligence ,business ,computer ,030217 neurology & neurosurgery ,Biological network - Abstract
Our presented idea is to integrate artificial neural network (probably of BICA type) with a real biological network (ideally in the future with the human brain) in order to extend or enhance cognitive- and sensory- capabilities (e.g. by associating existing and artificial sensory inputs). We propose to design such neuro-module using Hierarchical Temporal Memory (HTM) which is a biologically-inspired model of the mammalian neocortex. A complex task of contextual anomaly detection was chosen as our case-study, where we evaluate capabilities of a HTM module on a specifically designed synthetic dataset and propose improvements to the anomaly model. HTM is framed within other common AI/ML approaches and we conclude that HTM is a plausible and useful model for designing a direct brain-extension module and draft a design of a neuromorphic interface for processing asynchronous inputs. Outcome of this study is the practical evaluation of HTM's capabilities on the designed synthetic anomaly dataset, a review of problems of the HTM theory and the current implemen- tation, extended with suggested interesting research direction for the future.
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- 2016
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13. A Novel Big Data-Enabled Approach, Individualizing and Optimizing Brain Disorder Rehabilitation
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Miroslav Uller, Marketa Janatova, Marek Lenart, Olga Stepankova, and Peter Brezany
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030506 rehabilitation ,medicine.medical_specialty ,Rehabilitation ,Computer science ,business.industry ,Process (engineering) ,medicine.medical_treatment ,Big data ,Balance disorders ,Context (language use) ,Brain damage ,Biofeedback ,Continuous analysis ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,medicine ,medicine.symptom ,0305 other medical science ,business ,030217 neurology & neurosurgery - Abstract
Brain disorders occur when our brain is damaged or negatively influenced by injury, surgery, or health conditions. This chapter shows how the combination of novel biofeedback-based treatments producing large data sets with Big Data and Cloud-Dew Computing paradigms can contribute to the greater good of patients in the context of rehabilitation of balance disorders, a significant category of brain damage impairments. The underlying hypothesis of the presented original research approach is that detailed monitoring and continuous analysis of patient´s physiological data integrated with data captured from other sources helps to optimize the therapy w.r.t. the current needs of the patient, improves the efficiency of the therapeutic process, and prevents patient overstressing during the therapy. In the proposed application model, training built upon two systems, Homebalance—a system enabling balance training and Scope—a system collecting physiological data, is provided both in collaborating rehabilitation centers and at patient homes. The preliminary results are documented using a case study confirming that the approach offers a viable way towards the greater good of a patient.
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- 2018
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14. Towards Computer Supported Search for Semiological Features in Epilepsy Seizure Classification
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Olga Stepankova, Lenka Vyslouzilova, Michaela Nova, and Zdenek Vojtech
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Computer science ,business.industry ,medicine.disease ,computer.software_genre ,Epilepsy seizure ,Lateralization of brain function ,Computer supported ,03 medical and health sciences ,Identification (information) ,Epilepsy ,0302 clinical medicine ,medicine ,Ictal ,030212 general & internal medicine ,Artificial intelligence ,Seizure semiology ,Set (psychology) ,business ,computer ,030217 neurology & neurosurgery ,Natural language processing - Abstract
Seizure semiology has always been an important part of seizure classification. Value of the most common ictal signs for localization and lateralization of a seizure focus, as well as their sensitivity and specificity for certain focal epilepsies, is well known. All over it, there still remain many signs and poorly described patient behaviours during a seizure whose relation to a seizure focus have yet to be specified and confirmed. Some new signs have been introduced recently but all of them have been based on data provided from just a few dozens of patients. This is no surprise since checking for presence of a specific ictal sign in a patient requires lengthy manual review of video records documenting his/her seizures. We suggest a novel approach toward identification/verification of new ictal signs based on computer supported systematic review of unique extensive dataset of Na Homolce Hospital containing approximately 1.000 seizures (representing data of 400 patients with up to 5 seizures annotated). This requires transforming the original set of patient records into a database consisting of annotated ictal video-EEG recordings in a structured form suitable for statistical analysis as well as for analysis of sequence patterns. This contribution describes our SW tool ASTEP designed and developed for this purpose and demonstrates some properties of ASTEP database, namely advantages of the used seizure description as a sequence of considered ictal signs complemented by detailed information on timing, duration, repetition and mode of appearance of these signs. Finally, some preliminary results are reported.
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- 2018
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15. Examination of the Spatial Structure of Pigs’ Melanoma in Tissue Sections Based on Histology and Mass Spectrometry
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Vojtech Adam, Lenka Vyslouzilova, Tomáš Vaculovič, Jiri Anyz, Olga Stepankova, and Vratislav Horak
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0303 health sciences ,Laser ablation ,Chemistry ,Spatial structure ,Melanoma ,Histology ,Mass spectrometry ,medicine.disease ,01 natural sciences ,010104 statistics & probability ,03 medical and health sciences ,Nuclear magnetic resonance ,Microscopy ,medicine ,0101 mathematics ,Cluster analysis ,Inductively coupled plasma mass spectrometry ,030304 developmental biology - Abstract
We examine the spatial structure of the melanoma in tissue sections. The pigs melanoma was examined in 10 tissue samples obtained from animals of age between 4 and 22 weeks. The tissue sections were measured by light microscopy and Laser Ablation Ion Inductively Coupled Plasma Mass Spectrometry to obtain spatial metal (Cu, Zn) distribution. The exploratory analysis of the tissue sections indicates there is clearly a pattern in the spatial structure. Different projections of the spatial structure of the melanoma are obtained by the different measurement methods. The spectral clustering on the data was utilized to describe the structure in the data. According to the clustering results, there are distinct clusters of observations in the histological data. The spatial elemental distribution of the metals Cu and Zn cannot be clustered—the data form one compact cluster. The clustering of the histological images produces clusters which are related to the annotation of the biological samples in broader terms—the differences between fibrous and cancerous tissue.
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- 2018
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16. Towards precision brain disorder rehabilitation
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Marek Lenart, Marketa Janatova, Miroslav Uller, Olga Stepankova, and Peter Brezany
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030506 rehabilitation ,medicine.medical_specialty ,Rehabilitation ,Computer science ,Process (engineering) ,medicine.medical_treatment ,Feedback loop ,Biofeedback ,medicine.disease ,Electronic mail ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,Adaptive system ,medicine ,Task analysis ,0305 other medical science ,Stroke ,030217 neurology & neurosurgery - Abstract
Brain disorders include any conditions or disabilities that affect the brain. Some frequently occurring brain disorders (caused by e.g., injury or stroke) are associated with balance disorders that can be to some extent compensated by highly personalized and long term rehabilitation. This paper presents basic principles and reports the first results of our project focused on design and development of new generation data-centric approach to treatment of balance disorders through exergames offering many levels of difficulties that can be adjusted through choice of their parameters. The suggested approach paves the way to future precision rehabilitation models, in which the significant part of the training can be ensured through game like exercise supervised by an intelligent adaptive system called Intelligend Therapy Assistant (ITA) providing the patient with biofeedback. Further, the supervising ITA iteratively modifies parameters of the next run of the game (adapts them) according to the current needs of the individual patient in order to keep the patient motivated — this is ensured by introduction of a feedback loop between the ITA system and thorough evaluation of results achieved by the patient during the therapy process.
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- 2018
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17. Spatial mapping of metals in tissue-sections using combination of mass-spectrometry and histology through image registration
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Tomáš Vaculovič, Jiri Anyz, Viktor Kanicky, Olga Stepankova, Lenka Vyslouzilova, Hajo Haase, Michaela Tvrdonova, Vojtech Adam, Zbynek Heger, and Vratislav Horak
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,ZINC LEVELS ,Materials science ,STRESS ,Swine ,Laser ablation inductively coupled plasma mass spectrometry ,BEARING LIBECHOV MINIPIG ,Image registration ,COPPER ,Pilot Projects ,Mass spectrometry ,Article ,Mass Spectrometry ,Computer supported ,03 medical and health sciences ,MELANOBLASTOMA ,La icp ms ,Image Processing, Computer-Assisted ,medicine ,ELEMENTS ,Animals ,LA-ICP-MS ,Melanoma ,Multidisciplinary ,Histological Techniques ,MIXED-EFFECTS MODELS ,Spatial mapping ,Histology ,Disease Models, Animal ,Zinc ,030104 developmental biology ,Tissue sections ,MELANOMA PATIENTS ,Copper ,METALLOTHIONEIN-OVEREXPRESSION ,Biomedical engineering - Abstract
We describe a new procedure for the parallel mapping of selected metals in histologically characterized tissue samples. Mapping is achieved via image registration of digital data obtained from two neighbouring cryosections by scanning the first as a histological sample and subjecting the second to laser ablation inductively coupled plasma mass spectrometry. This computer supported procedure enables determination of the distribution and content of metals of interest directly in the chosen histological zones and represents a substantial improvement over the standard approach, which determines these values in tissue homogenates or whole tissue sections. The potential of the described procedure was demonstrated in a pilot study that analysed Zn and Cu levels in successive development stages of pig melanoma tissue using MeLiM (Melanoma-bearing-Libechov-Minipig) model. We anticipate that the procedure could be useful for a complex understanding of the role that the spatial distribution of metals plays within tissues affected by pathological states including cancer.
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- 2017
18. From Amino Acids Profile to Protein Identification: Searching for Differences in Roe Deer Papilloma
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Marketa Kominkova, Miroslava Beklova, Petr Michalek, Vojtech Adam, Branislav Ruttkay-Nedecky, Jiri Pikula, Ondrej Zitka, Olga Stepankova, Jiri Anyz, Natalia Cernei, Roman Guran, and René Kizek
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Gel electrophoresis ,chemistry.chemical_classification ,Leucine zipper ,Molecular mass ,biology ,Organic Chemistry ,Clinical Biochemistry ,medicine.disease ,Proteomics ,Biochemistry ,Pyridoxal kinase ,Analytical Chemistry ,Amino acid ,Roe deer ,chemistry ,biology.animal ,medicine ,Papilloma - Abstract
Papillomaviruses, small non-enveloped DNA viruses, are considered as the cause of a number of cancers, such as a cervical, skin, anal, and penile cancers. Roe deer papillomavirus infection can be easily characterized by typical warts on the skin. The aim of this study was to characterize differences of amino acid and protein composition in healthy and tumour tissue of roe deer using methods including ion-exchange chromatography, SDS-PAGE, two-dimensional gel electrophoresis and MALDI-TOF MS. The obtained data were statistically evaluated. Cluster analysis of all variables showed biggest differences in proline in control and papilloma samples. Further, we aimed at electrophoretic analysis of the samples. Discriminant analysis projections to latent structures (Projection to the latent structure Discrimination analysis, syn. Discrimination Partial least squares analysis, PLS DA) was used to evaluate the obtained results. Examining model PLS DA, there was found that the greatest effect on whether the individual is classified as healthy, or with papilloma, is the latent variable that best correlates with the molecular mass from 108.8 to 128.1 kDa and from 231.2 to 290.4 kDa in the original signal. Finally, using mass spectrometry three proteins, pyridoxal kinase, myoblast determination protein and leucine zipper transcription factor-like protein 1, most likely related to cancer were found.
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- 2014
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19. Using the radial basis function model for the Brdicka curve fitting
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Jiri Anyz and Olga Stepankova
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business.industry ,Curve fitting ,Applied mathematics ,Radial basis function ,Automatic processing ,Artificial intelligence ,business ,Machine learning ,computer.software_genre ,computer ,Mathematics - Abstract
The Brdicka curve proved to be a good source of biomarkers, especially of cancer, due to its relation to the concentration of metalothionein protein. Various approaches for the automatic processing of the Brdicka curve were proposed and showed promising results. The Brdicka curve was examined from various points of view, but there are still missing pieces to the whole image of the multi-stage process of the Brdicka curve utilization. This paper presents a first attempt to the understanding of the content of Brdicka curve by the means of regression modeling. A radial basis function model was used to fit the Brdicka curve. This model proved to be complex enough to precisely fit the Brdicka curve. Unfortunately, in a follow-up experiment designed to validate the appropriateness of the model, the radial basis function model was found not to model the phenomena taking place during the Brdicka curve measurement.
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- 2015
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20. Differences in urinary proteins related to surgical margin status after radical prostatectomy
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Vojtech Adam, Olga Stepankova, Ondrej Zitka, S. Vesely, Zbynek Heger, Petr Michalek, René Kizek, Jiri Anyz, Katerina Duskova, Natalia Cernei, and Roman Guran
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Oncology ,Male ,Proteomics ,Cancer Research ,Surgical margin ,medicine.medical_specialty ,Pathology ,medicine.medical_treatment ,Biology ,Disease-Free Survival ,Prostate cancer ,Antigens, Neoplasm ,Internal medicine ,medicine ,Biomarkers, Tumor ,Humans ,Aged ,Glycoproteins ,Prostatectomy ,Oncogene ,L-Lactate Dehydrogenase ,Cancer ,Prostatic Neoplasms ,General Medicine ,Cyclin-Dependent Kinase 6 ,Middle Aged ,medicine.disease ,Prognosis ,Molecular medicine ,Isoenzymes ,biology.protein ,Electrophoresis, Polyacrylamide Gel ,Cyclin-dependent kinase 6 ,Carrier Proteins - Abstract
Presented exploratory pilot study was aimed at evaluation of proteins present in urinary specimens collected from prostate cancer suffering subjects after radical prostatectomy, divided into two experimental cohorts: positive (n=15) and negative (n=15) surgical margins (PSM/NSM). The presence of PSM suggests inadequate cancer clearance and the possible need for additional treatment. Proper identification of these risk-patients is therefore of a paramount importance. Total protein profiles were firstly identified by using SDS-PAGE and compared by using partial least square discrimination analysis (PLS-DA), which revealed differences in molecular weights of 80-99 and 150-235 kDa between the experimental groups. For further identification of proteins, comparative proteomic technologies were employed. Two-dimensional gel electrophoresis with subsequent identification of protein spots by using MALDI-TOF mass fingerprinting revealed differential expression of proteins between NSM/PSM cohorts. Moreover, in PSM group, three uniquely identified proteins (cyclin-dependent kinase 6, galectin-3-binding protein and L-lactate dehydrogenase C chain) were found, which show tight connection with prostate cancer and presence of all of them was previously linked to certain aspects of prostate cancer. These proteins may be associated with the molecular mechanisms of prostate cancer development; hence, their identification may be helpful for the assessment of disease progression risk after radical prostatectomy, but also for possible early diagnosis.
- Published
- 2015
21. Agent architecture for smart adaptive systems
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Lenka Lhotska and Olga Stepankova
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0209 industrial biotechnology ,Decision support system ,Knowledge management ,Computer science ,business.industry ,media_common.quotation_subject ,020208 electrical & electronic engineering ,02 engineering and technology ,Social behaviour ,020901 industrial engineering & automation ,Adaptive system ,Mutual awareness ,Perception ,0202 electrical engineering, electronic engineering, information engineering ,Architecture ,business ,Agent architecture ,Instrumentation ,Neighbourhood (mathematics) ,media_common - Abstract
This paper discusses the possibility of utilizing a multiagent system as a platform for development of a smart adaptive system in medicine. A knowledge-based model of the agents’ mutual awareness (social knowledge) is presented. The tri-base acquaintance (3bA) model formalizing the agent’s social behaviour knowledge and co-operation neighbourhood knowledge is enhanced to support attention focussing and to ensure a holistic complex perception of the problem. The paper focuses on an analysis of the content of 3bA knowledge bases for applications in medical decision support. An architecture for a multiagent system, ADAM, for medical decision support and monitoring is proposed.
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- 2004
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22. Student projects in assistive technologies
- Author
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Lenka Lhotska, Jaromir Dolezal, Miroslav Uller, Olga Stepankova, Jan Havlik, and Petr Novák
- Subjects
Medical services ,Engineering ,Work (electrical) ,Multimedia ,Home automation ,business.industry ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,Special needs ,business ,computer.software_genre ,computer - Abstract
The paper presents briefly our educational activities in the area of assistive technologies. We have developed a special course on assistive technologies that uses in practical part project-based approach. We have established a specialized facility where the students can work on their projects. The facility simulates real environment of a smart home and a hospital room. The students can select a topic for a project from our proposals or they can come with their own ideas. In the paper we present results of several student projects that can be in the future used as practical applications for people with special needs. Some of them can be additionally used as games both for children and adults.
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- 2014
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23. Deep versus broad knowledge in interdisciplinary education
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Lenka Lhotska and Olga Stepankova
- Subjects
Knowledge management ,Interdisciplinary education ,Computer science ,business.industry ,Knowledge integration ,Knowledge engineering ,Domain knowledge ,business - Published
- 2014
- Full Text
- View/download PDF
24. Support of students with special needs at the Czech Technical University in Prague
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Olga Stepankova and Lenka Lhotska
- Subjects
Czech ,Engineering ,business.industry ,Pedagogy ,Technical university ,Mathematics education ,language ,Special needs ,business ,language.human_language - Published
- 2014
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25. Intelligent medical systems – preface
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Olga Stepankova, Lenka Lhotska, S.H. Babic, and Peter Kokol
- Subjects
Engineering management ,Engineering ,Artificial Intelligence ,business.industry ,Humans ,Health Informatics ,business ,Health informatics ,Medical Informatics ,Medical systems - Published
- 2001
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26. Proplant: Multiagent system for production planning
- Author
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Michal Pechoucek, Olga Stepankova, Jiri Lazansky, and Vladimir Marik
- Subjects
business.industry ,Computer science ,Distributed computing ,media_common.quotation_subject ,Extension (predicate logic) ,Negotiation ,Production planning ,Parallel processing (DSP implementation) ,Artificial Intelligence ,Production manager ,Production (economics) ,Artificial intelligence ,business ,media_common - Abstract
The so-called ''tribase'' acquaintance model of the agent's behavior is presented in this paper. This represents an extension of the twin-base model (Cao et al., 1997). Based on practical experience, the new model tries to cope with parallel processing, precedence constraints, and sparse resources. The idea of substituting the interagent negotiation processes by the periodical internal planning activity of the agents is stressed. A multiagent system, ProPlanT, as an application of the tribase model for the project-oriented production planning developed for TESLA TV company is described in detail. Three types of agents production planning agent (PPA), production management agent (PMA), and production agent (PA) are distinguished. The corresponding tribase models and potential role of metaagents are discussed.
- Published
- 2000
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27. Multi-agent systems: which research for which applications
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Olga Stepankova, Klaus Fischer, and Eugénio Oliveira
- Subjects
Computer science ,business.industry ,General Mathematics ,media_common.quotation_subject ,Multi-agent system ,Autonomous robot ,Computer Science Applications ,Negotiation ,Workflow ,Computer-integrated manufacturing ,Control and Systems Engineering ,Human–computer interaction ,Key (cryptography) ,Systems architecture ,Gestalt psychology ,Artificial intelligence ,business ,Software ,media_common - Abstract
For sometime now agent-based and multi-agent systems (MASs) have attracted the interest of researchers far beyond traditional computer science and artificial intelligence (AI). In this article we try to identify focal points of interest for researchers working in the area of distributed AI (DAI) and MAS as well as application-oriented researchers coming from related disciplines, e.g. electrical and mechanical engineering. We do this by presenting key research topics in DAI and MAS research and by identifying application domains in which the DAI and MAS technologies are most suitable. The research topics we discuss are separated into agent architectures and organisations, negotiation among agents, and self-adaptation of MAS using learning techniques. Regarding the application domains for these techniques we distinguish the application domains according to whether the agents control a physical or virtual body (Gestalt) or not. This separation of the application domains is not strict; it represents two ends of a continuum. On the one end of this continuum we have autonomous robot systems which act in a physical environment (sometimes referred to as hardware agents), and on the other end, we have abstract environments, such as in workflow systems, which rarely display the geometrical and physical aspects of the environment we are used to living in.
- Published
- 1999
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28. Visualization of Individuals Characterized by a Set of Synchronized Signals
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Olga Stepankova and Jiri Anyz
- Subjects
Complex data type ,Data visualization ,Computer science ,business.industry ,Data mining ,computer.software_genre ,business ,computer ,Visualization - Abstract
In this paper we would like to suggest a modification of data vases visualization that can help understanding complex data where each subject is described by a vector of synchronized signals taken in the same time intervals. The advantages of our new approach were verified when visualizing set of Brdicka curves and answering an interesting question raised in proteomics about the Brdicka curves proportionality.
- Published
- 2013
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29. Does IT Bring Hope for Wellbeing?
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Sébastien Rousseaux, Marzia Bettocchi, Olga Stepankova, Carlo Descovich, Daniel Novák, Martin Haluzik, Marco Carulli, František Babič, Christine Petioky, Miroslav Uller, Claudio Lamberti, Mike Martin, Boris Dvorácek, Marek Lenart, Massimo Busuoli, Tiziana Mucci, Alexander Wöhrer, Milos Mraz, P Richter, Rob Wilson, Annunziata Siena, Gianluca D’Agosta, Teresa Gallelli, Emanuela Pipitone, Maria Manuela Cruz-Cunha, Isabel Maria Miranda, Patricia Goncalves, Novak, D., Stepankova, O., Rousseaux, S., Busuoli, M., Carulli, M., D’Agosta, D., Gallelli, T., Uller, M., Mraz, M., Haluzik, M., Richter, P., Martin, M., Wilson, R., Bettocchi, M., Mucci, T., Pipitone, E., Lamberti, C., Siena, A., Descovich, C., Dvoracek, B., Petioky, C., Babic, F., Lenart, M., Wohrer, A., and D'Agosta, G.
- Subjects
IT ,Customer experience ,Medical education ,SOCIAL SERVICES ,healthcare ,Social exclusion ,Social Welfare ,Sociology ,Older people ,Social psychology ,Effective solution - Abstract
The first part of this chapter reviews the design, implementation, and customer experience with the OLDES SW tele-care platform developed within the EU project Older people's e-services at home. The OLDES solution has been successfully tested at two different locations: in Italy with the participation of a group of 100 seniors (including 10 senior citizens suffering from heart disease), and in the Czech Republic, with the involvement of a group of 10 diabetic patients. The suggested OLDES approach proved to be an effective solution for municipalities, hospitals, and their contact centres for providing health and social services. The project partners therefore decided to develop a second generation of the system called SPES (Support to Patients through E-Service Solutions), which started in April 2011. The SPES project aims at transferring the original approach and results achieved in implementing the OLDES focusing on new target problem domains: dementia, mobility-challenged persons, respiratory problems, and social exclusion. © 2013, IGI Global.
- Published
- 2013
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30. Use of brightness wavelet transformation for automated analysis of serum metallothioneins- and zinc-containing proteins by Western blots to subclassify childhood solid tumours
- Author
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Tomas Eckschlager, René Kizek, Lenka Vyslouzilova, David Hynek, Jiri Anyz, Jan Hrabeta, Vojtech Adam, Jarmila Kruseova, Sona Krizkova, and Olga Stepankova
- Subjects
Clinical Biochemistry ,Blotting, Western ,chemistry.chemical_element ,Zinc ,Biochemistry ,Analytical Chemistry ,Neuroblastoma ,Neoplasms ,medicine ,Metallothionein ,Humans ,Child ,Medulloblastoma ,biology ,medicine.disease ,Molecular biology ,Blot ,chemistry ,Immunology ,biology.protein ,Osteosarcoma ,Sarcoma ,Antibody ,Algorithms - Abstract
In this study, we determined serum levels of metallothioneins (MTs) and zinc in children with solid tumours (neuroblastoma, Hodgkin lymphoma, medulloblastoma, osteosarcoma, Ewing sarcoma and nephroblastoma) by differential pulse voltammetry Brdicka reaction and ELISA. Zn(II) level in patients sera was 40% compared to controls, contrariwise, MT level was 4.2 × higher in patients. No significant differences among single diagnoses were found both for Zn(II) and MT. When determined Zn(II)/MT ratio, in controls its value was 24.6, but it was 2.6 in patients. After Western-blotting with anti-MT and anti-Zn chicken antibodies, variable intensities of the bands within the samples were observed. The brightness curve obtained for each sample both for MT- and Zn blots was further analysed to produce a list of band positions together with some complementary information related to the intensity of the observed bands by the optimised algorithm. We constructed from those profiles decision trees that enable to distinguish different groups of tumours. The blood samples were heat-treated, in which we supposed mainly MT, but samples contained other thermostable Zn-containing proteins that were helpful for identification of embryonal tumours with 88% accuracy and for identification of sarcomas with 78% accuracy. In MT blots the accuracies were 53 and 45%, respectively. Simultaneous analysis of MT and Zn blots did not increased accuracy of identification neither in embryonal tumours (80%) nor in sarcomas. Those results are promising not only from diagnostic point of view but particularly in the area of studying of individual MT isoforms and their aggregates in malignant tumours.
- Published
- 2012
31. Tissue specific electrochemical fingerprinting
- Author
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Vojtech Adam, Jaromir Hubalek, Jiri Anyz, Olga Stepankova, Pavlina Sobrova, Lenka Vyslouzilova, Libuše Trnková, Marketa Ryvolova, and René Kizek
- Subjects
Male ,Proteomics ,Decision tree ,lcsh:Medicine ,Biology ,010402 general chemistry ,Bioinformatics ,01 natural sciences ,Biochemistry ,Computer Applications ,Task (project management) ,Analytical Chemistry ,Model Organisms ,Chemical Biology ,Electrochemistry ,Tissue specific ,Animals ,Tissue Distribution ,Tissue distribution ,Rats, Wistar ,lcsh:Science ,Data processing ,Multidisciplinary ,Models, Statistical ,lcsh:R ,010401 analytical chemistry ,Decision Trees ,Applied Chemistry ,Computational Biology ,Animal Models ,Models, Theoretical ,Data science ,0104 chemical sciences ,Rats ,Chemistry ,Open source ,Research Design ,Data Interpretation, Statistical ,Computer Science ,Rat ,lcsh:Q ,Metallothionein ,Rabbits ,Algorithms ,Research Article ,Computer Modeling - Abstract
BACKGROUND: Proteomics and metalloproteomics are rapidly developing interdisciplinary fields providing enormous amounts of data to be classified, evaluated and interpreted. Approaches offered by bioinformatics and also by biostatistical data analysis and treatment are therefore of extreme interest. Numerous methods are now available as commercial or open source tools for data processing and modelling ready to support the analysis of various datasets. The analysis of scientific data remains a big challenge, because each new task sets its specific requirements and constraints that call for the design of a targeted data pre-processing approach. METHODOLOGY/PRINCIPAL FINDINGS: This study proposes a mathematical approach for evaluating and classifying datasets obtained by electrochemical analysis of metallothionein in rat 9 tissues (brain, heart, kidney, eye, spleen, gonad, blood, liver and femoral muscle). Tissue extracts were heated and then analysed using the differential pulse voltammetry Brdicka reaction. The voltammograms were subsequently processed. Classification models were designed making separate use of two groups of attributes, namely attributes describing local extremes, and derived attributes resulting from the level=5 wavelet transform. CONCLUSIONS/SIGNIFICANCE: On the basis of our results, we were able to construct a decision tree that makes it possible to distinguish among electrochemical analysis data resulting from measurements of all the considered tissues. In other words, we found a way to classify an unknown rat tissue based on electrochemical analysis of the metallothionein in this tissue.
- Published
- 2012
32. Brdicka curve — A new source of biomarkers
- Author
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Andrea Szabóová, Lenka Vyslouzilova, Vojtech Adam, Olga Stepankova, Jiri Anyz, and René Kizek
- Subjects
Signal processing ,business.industry ,Wavelet transform ,Machine learning ,computer.software_genre ,Wavelet ,Transformation (function) ,Signal classification ,Fully automated ,Content (measure theory) ,Artificial intelligence ,Representation (mathematics) ,Biological system ,business ,computer ,Mathematics - Abstract
This paper is devoted to analysis of voltammograms resulting from Brdicka reaction - the graphs that are currently used for determination of content of metallothioneins (MT) in tissue samples most often. We describe our search for typical patterns in the considered curves that would make it possible to distinguish among voltammograms produced by samples taken from different body parts. We suggest a rather compact representation of information contained in the considered graphs that is based on Haar's Simple Wavelet transformation. The resulting representation is successfully tested for classification of real data obtained from 8 rats and their 9 body parts. The preliminary experiments confirm that the suggested derived attributes of Brdicka curves seem to be good candidates for becoming numerical biomarkers exhibiting an important advantage: the process leading to their calculation can be fully automated.
- Published
- 2011
- Full Text
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33. Diabetes management in OLDES project
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Daniel Novák, Olga Stepankova, Sébastien Rousseaux, Martin Haluzik, Massimo Busuoli, J. Smrz, Miroslav Uller, and Milos Mraz
- Subjects
Telemedicine ,Remote patient monitoring ,Health Services for the Aged ,Interface (computing) ,Biomedical Engineering ,Pilot Projects ,computer.software_genre ,User-Computer Interface ,Quality of life (healthcare) ,Microcomputers ,Diabetes management ,Health care ,Diabetes Mellitus ,Medicine ,Humans ,European Union ,Project management ,Simulation ,Aged ,Multimedia ,business.industry ,Home Care Services ,Information and Communications Technology ,business ,computer - Abstract
EU project OLDES (Older People’s e-services at home) develops easy to use and low cost ICT platform in order to offer a better quality of life to elderly people directly in their homes through innovative systems of tele-accompany, tele-assistance and tele-medicine. The elderly are able to access the services and send relevant medical data from their home by being connected to the central server via a low cost PC which is based on Negroponte paradigm. The OLDES platform interface uses television screens controlled through a remote control customized for the elderly. The feasibility of OLDES project is evaluated by the pilot study concentrating on compensation of diabetic patients. Compensation of diabetes is achieved by monitoring glucose glycemia level, blood pressure and weight. Moreover, the patient feeds into OLDES system daily consumption of food using interactive food scales and obtains advice if necessary.
- Published
- 2009
34. Inside the NIGM Grid Service: Implementation, Evaluation and Extension
- Author
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Jianguo Han, Ibrahim Elsayed, Alexander Wöhrer, Olga Stepankova, Yuzhang Han, Ting Liu, Peter Brezany, Ivan Janciak, Lenka Nováková, and M. Zakova
- Subjects
Service (systems architecture) ,business.industry ,Computer science ,Information technology ,Ontology (information science) ,Grid ,computer.software_genre ,Data science ,Data modeling ,Grid computing ,e-Science ,Web service ,Software engineering ,business ,computer - Abstract
Chinese and Western medicines have a different understanding and approach to life, health, and illness - joining their complementary work and support them by an advanced information technology could result in an improved health system. The Non-Invasive Blood Glucose Measurement (NIGM) Service is a grid based implementation of a novel non-invasive method for measuring human blood glucose values exploiting Chinese meridian theory. In this paper, we describe the implementation of the NIGM service in detail, present an initial performance evaluation and discuss an extension towards other non-invasive long term diabetic relevant measurement. Additionally, the adaption of the ontology-based Medical records Annotation Tool (MedAT) framework towards usage in NIGM trails is elaborated.
- Published
- 2008
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- View/download PDF
35. Abstract Architecture for Meta-reasoning in Multi-agent Systems
- Author
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Olga Stepankova, Jaroslav Barta, Vladimír Mařík, and Michal Pěchouček
- Subjects
Action (philosophy) ,Inductive logic programming ,Knowledge representation and reasoning ,Computer science ,business.industry ,Process (engineering) ,Complete information ,Multi-agent system ,Artificial intelligence ,business ,Agent architecture ,ComputingMethodologies_ARTIFICIALINTELLIGENCE - Abstract
Agent's meta-reasoning is a computational process that implements agent's capability to reason on a higher level about another agents or a community ofagen ts. There is a potential for meta-reasoning in multi-agent systems. Meta-reasoning can be used for reconstructing agents' private knowledge, their mental states and for prediction of their future courses of action. Meta-agents should have the capability to reason about incomplete or imprecise information. Unlike the ordinary agents, the meta-agent may contemplate about the community of agents as a whole and is expected to contribute to agent's operation efficiency improvement. This contribution suggests a theoretical specification of an abstract reasoning and knowledge representation architecture for the meta-reasoning agents and discusses/categorizes the related computational processes.
- Published
- 2007
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36. Enhancing Human Choice by Information Technologies
- Author
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Olga Stepankova, Tanja Urbančič, and Nada Lavrač
- Subjects
Quality of life (healthcare) ,Risk analysis (engineering) ,business.industry ,Computer science ,Research community ,Health care ,Information technology ,Network intelligence ,business ,Field (computer science) ,New media - Abstract
The paper discusses what the research community in the field of information technologies can do to improve quality of life by offering more alternatives both to individuals and to the society. Moreover, attention is given to the present IT tools which can be used to support decision making and choice among possible alternatives in complex settings. The role of ITS in achieving this goal is explained and illustrated by examples in different fields, including environmental decision-making and health care. Enhanced possibilities of choice in collaborative settings supported by new media and computer networks are also shown. Besides the role of ITS that support this enhancement, the importance of non-technological aspects is presented with special emphasis on responsibility and network intelligence.
- Published
- 2007
- Full Text
- View/download PDF
37. Acquaintance models for integration-oriented multi-agent systems
- Author
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Michal Pechoucek, Vladimir Marik, and Olga Stepankova
- Subjects
Knowledge management ,Delegation ,Knowledge representation and reasoning ,Computer science ,business.industry ,Multi-agent system ,media_common.quotation_subject ,Open Knowledge Base Connectivity ,Procedural knowledge ,Task (project management) ,Component-based software engineering ,Decomposition (computer science) ,business ,media_common - Abstract
The paper addresses problems of efficient knowledge representation and exploration of social knowledge enabling agents' integration into the multi-agent community. The proposed solutions are based on task decomposition, organization of negotiations, responsibility delegation and other aspects of social behavior in multi-agent systems aimed at integration of already existing software components. It is supposed that all the social knowledge is kept separated from the problem solving knowledge and agents' specific internal intelligence and that it is organized and administered in the acquaintance models located in the agents' wrappers. A specific tri-base acquaintance model is formalized and discussed throughout the paper. This model helps to optimize the communication traffic and to implement meta-reasoning processes. Practical applications of the acquaintance model in different fields are presented, and acquired experience is discussed.
- Published
- 2002
- Full Text
- View/download PDF
38. Staff perspectives on the usability of electronic patient records for planning and delivering dementia care in nursing homes: a multiple case study
- Author
-
Kate Shiells, Angie Alejandra Diaz Baquero, Olga Štěpánková, and Iva Holmerová
- Subjects
Assessment ,Dementia ,Care plan ,Electronic health records ,Electronic patient records ,Nursing home ,Computer applications to medicine. Medical informatics ,R858-859.7 - Abstract
Abstract Background The electronic patient record (EPR) has been introduced into nursing homes in order to facilitate documentation practices such as assessment and care planning, which play an integral role in the provision of dementia care. However, little is known about how the EPR facilitates or hinders these practices from the end-user’s perspective. Therefore, the objective of this qualitative study was to explore the usability issues associated with the EPR for assessment and care planning for people with dementia in nursing homes from a staff perspective. Methods An exploratory, qualitative research design with a multiple case study approach was used. Contextual Inquiry was carried out with a variety of staff members (n = 21) who used the EPR in three nursing homes situated in Belgium, Czech Republic and Spain. Thematic analysis was used to code interview data, with codes then sorted into a priori components of the Health Information Technology Evaluation Framework: device, software functionality, organisational support. Two additional themes, structure and content, were also added. Results Staff provided numerous examples of the ways in which EPR systems are facilitating and hindering assessment and care planning under each component, particularly for people with dementia, who may have more complex needs in comparison to other residents. The way in which EPR systems were not customisable was a common theme across all three homes. A comparison of organisational policies and practices revealed the importance of training, system support, and access, which may be linked with the successful adoption of the EPR system in nursing homes. Conclusions EPR systems introduced into the nursing home environment should be customisable and reflect best practice guidelines for dementia care, which may lead to improved outcomes and quality of life for people with dementia living in nursing homes. All levels of nursing home staff should be consulted during the development, implementation and evaluation of EPR systems as part of an iterative, user-centred design process.
- Published
- 2020
- Full Text
- View/download PDF
39. A Learning System for Decision Support in Telecommunications
- Author
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Olga Stepankova, Jirí Zídgek, and Filip Zelezný
- Subjects
Decision support system ,Thesaurus (information retrieval) ,Inductive logic programming ,Computer science ,Event (computing) ,business.industry ,Decision rule ,Telecommunications ,business - Abstract
We present a system for decision support in telecommunications. History data describing the operation of a telephone exchange are analyzed by the system to reconstruct understandable event descriptions. The event descriptions are processed by an algorithm inducing rules describing regularities in the events. The rules can be used as decision support rules (for the exchange operator) or directly to automate the operation of the exchange.
- Published
- 2002
- Full Text
- View/download PDF
40. Distributed Branch and Bound Algorithm in Coalition Planning
- Author
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Jaroslav Barta, Michal Pechoucek, and Olga Stepankova
- Subjects
Intelligent agent ,Mathematical optimization ,Distribution (mathematics) ,Branch and bound ,Search algorithm ,Computer science ,State space ,computer.software_genre ,computer - Abstract
We suggest the Distributed Branch and Bound Algorithm intended for solving problems with exponential complexity e.g. coalition planning. This technique consists of three parts: the state space distribution, effective search algorithm and partial solution expansion. We will describe CPlanT - an OOTW (operations other than war) coalition planning multi-agent system where this approach has been exploited.
- Published
- 2002
- Full Text
- View/download PDF
41. Data Mining and Resource Allocation: A Case Study
- Author
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Petr Miksovský, Olga Stepankova, Jiri Klema, Stepán Lauryn, and Lenka Nováková
- Subjects
Training set ,Operations research ,Computer science ,Resource allocation ,Data mining ,computer.software_genre ,computer ,Scheduling (computing) - Abstract
This paper presents a case study concerning scheduling and resource allocation issues in a spa. The paper is data-mining oriented. It discusses and describes how the history data can be used as a source for data-mining leading to discovery of rules or algorithms useful for prediction of resources requirements. In particular, we focused to identify groups of patients which appear frequently in the training set and which exhibit characteristic behavior or requirements of spa utilities. Then we predicted a set of health procedures to be passed for each member of such group. This approach resulted in a health procedure prediction algorithm satisfactory for early and convenient scheduling.
- Published
- 2002
- Full Text
- View/download PDF
42. Acquaintance Model in Re-Planning and Re-Configuration
- Author
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Olga Stepankova, Michal Pechoucek, and Vladimir Marik
- Subjects
Production planning ,Computer science ,business.industry ,Artificial intelligence ,business - Abstract
The problems of re-configuration and re-planning in multi-agent systems exploring acquaintance models of their behavior are discussed throughout this paper. Both the autonomous and supervised methods of replanning are distinguished. The advantages of the tri-base acquaintance models used in the ProPlanT production planning system for solving the reconfiguration and re-planning tasks are sketched.
- Published
- 2000
- Full Text
- View/download PDF
43. Role of Acquaintance Models in Agent-Based Production Planning System
- Author
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Michal Pechoucek, Olga Stepankova, and Vladimir Marik
- Subjects
An acquaintance ,Decision support system ,Production planning ,Knowledge management ,Computer science ,Mechanism (biology) ,business.industry ,Mutual awareness ,Systems architecture ,Information system ,Artificial intelligence ,business - Abstract
This paper comments the role of acquaintance models in agent-based engineering solutions. We present a specific methodology,a tri-base acquaintance model, as formal model of agents’ mutual awareness. The model contains three separate knowledge structures for representing agents’ permanent, semi-permanent and temporary knowledge, respectively, and mechanism for administering, maintenance and exploration of the knowledge. The paper explains how utilisation of an acquaintance model contributes to communication savings and to reduction of overall distributed problem solving complexity. Utilisation of the tri-base acquaintance model is illustrated on ProPlanT multi-agent system for project-oriented production planning. The system architecture exploits several differenttypes of agents exploring the tri-base mechanism including the meta-agents who are used to adjust and tune the agents’ acquaintance models.
- Published
- 2000
- Full Text
- View/download PDF
44. On updating the data warehouse from multiple data sources
- Author
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Petr Miksovský, Kamil Matousek, Olga Stepankova, and Zdenek Kouba
- Subjects
Information extraction ,Multiple data ,Focus (computing) ,Computer science ,Information system ,Data mining ,computer.software_genre ,computer ,Data warehouse ,Information integration - Abstract
The paper discusses various problems related to feeding the data warehouse with data originated in various data sources. The main focus is concentrated on describing and handling of uncertainty, which comes from merging imperfect data sources. Uncertainty measures and their implementation approaches are suggested.
- Published
- 1998
- Full Text
- View/download PDF
45. Applications of model-based co-operative agents in production planning
- Author
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Jirí Lazanský, Olga Stepankova, Michal Pechoucek, and Vladimir Marik
- Subjects
Co operative ,Operations research ,business.industry ,Computer science ,media_common.quotation_subject ,Extension (predicate logic) ,Negotiation ,Production planning ,Computer-integrated manufacturing ,Parallel processing (DSP implementation) ,Information system ,Software engineering ,business ,media_common - Abstract
The tri-base acquaintance model of the agent's behaviour is presented in this paper. This represents an extension of the twin-base model [Cao 97]. Based on practical experience, the new model tries to cope with parallel processing, precedence constraints, and sparse resources. The idea of substituting the interagent negotiation processes by the internal planning activity of the agents is stressed. This strategy is enabled by periodic revisions of the knowledge and data contained in the tri-base knowledge/data bases.
- Published
- 1998
- Full Text
- View/download PDF
46. Role of qualitative reasoning in a multi-agent system
- Author
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Jirí Lazanský, Olga Stepankova, and Vladimir Marik
- Subjects
Qualitative reasoning ,Reasoning system ,Observer (quantum physics) ,Computer science ,business.industry ,Multi-agent system ,Control reconfiguration ,State (computer science) ,Artificial intelligence ,business - Abstract
The paper studies the possibility to use qualitative reasoning technology for improving behaviour of multi-agent systems. For this purpose, the twin-base communication model [Cao 97] is enriched to contain the state information (a tri-base model is defined) and it is combined with the idea of a super-agent. The super-agent exploring the qualitative reasoning methods acts as a global observer and state evaluator with limited reconfiguration rights. The impact and efficiency of the proposed approach are analysed.
- Published
- 1997
- Full Text
- View/download PDF
47. Cooperative agents in DISCIM environment
- Author
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Ondrej Flek, Vladimir Marik, Olga Stepankova, and Jan Kout
- Subjects
Distributed Computing Environment ,Qualitative reasoning ,Artificial neural network ,Computer science ,Multi-agent system ,Distributed computing ,Information exchange - Abstract
In complex domains, the decisions have to be based on information from various sources. Distributed environment DISCIM, based on multi-agent ideas, has been developed to support the necessary information exchange and distributed processing. This paper describes DISCIM specific methods allowing to create new agents from programs developed as stand-alone, originally. This is the case of a neural network emulator, of a qualitative reasoning system and of a data-base system POSTGRES — the “agentification” of all of them is treated in detail. Attention is devoted to comparison of the DISCIM system with other existing systems.
- Published
- 1996
- Full Text
- View/download PDF
48. Does CIM need AI?
- Author
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Olga Stepankova, Jirí Lazanský, and Vladimir Marik
- Subjects
Horn clause ,business.industry ,Computer science ,Knowledge engineering ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,GeneralLiterature_MISCELLANEOUS ,Software ,Inductive logic programming ,System integration ,Case-based reasoning ,business ,Software engineering ,Logic programming ,Declarative programming - Abstract
The parts of AI which seems to be of substantial importance for the CIM tasks are overviewed in this contribution. The stress is aimed mainly at impacts of Knowledge Engineering at the global CIM software architectures, at Distributed AI as a basis for system integration, at AI-centered view on Planning and Scheduling, at the role of Declarative Programming and Machine Learning in CIM tasks. The potential contributions of the stressed topics is discussed.
- Published
- 1995
- Full Text
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49. Qualitative reasoning and CIM
- Author
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Olga Stepankova and Ivo Marvan
- Subjects
Qualitative reasoning ,Reasoning system ,Opportunistic reasoning ,Knowledge management ,Deductive reasoning ,Knowledge representation and reasoning ,Management science ,Computer science ,business.industry ,Commonsense reasoning ,Case-based reasoning ,Model-based reasoning ,business - Abstract
Qualitative reasoning has been suggested and studied in artificial intelligence as a tool for knowledge representation, mental simulation and simulation of behavior of physical systems. This paper is an attempt to formalize various aspects of human thought covering common sense reasoning about physical reality. We try to point to those CIM tasks, which are of qualitative nature. This review helps us to identify those existing qualitative techniques, which are ready to be used in CIM. This paper introduces readers to some techniques of qualitative simulation on examples.
- Published
- 1995
- Full Text
- View/download PDF
50. An introduction to qualitative reasoning
- Author
-
Olga Stepankova
- Subjects
Qualitative reasoning ,Section (archaeology) ,Reading (process) ,media_common.quotation_subject ,Psychology of reasoning ,Physical pendulum ,computer.software_genre ,Formal system ,computer ,Expert system ,Field (computer science) ,Epistemology ,media_common - Abstract
The first section tries to indicate the reasons for study of qualitative reasoning within the field of Artificial Intelligence. The second section solves an example from physics as an illustartion of usefulness of qualitative arguments. The third section briefly reviews formal systems for qualitative reasoing. The last section offers some suggestions for further reading.
- Published
- 1992
- Full Text
- View/download PDF
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