89 results on '"Olavo B. Amaral"'
Search Results
2. Comparing quality of reporting between preprints and peer-reviewed articles in the biomedical literature
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Clarissa F. D. Carneiro, Victor G. S. Queiroz, Thiago C. Moulin, Carlos A. M. Carvalho, Clarissa B. Haas, Danielle Rayêe, David E. Henshall, Evandro A. De-Souza, Felippe E. Amorim, Flávia Z. Boos, Gerson D. Guercio, Igor R. Costa, Karina L. Hajdu, Lieve van Egmond, Martin Modrák, Pedro B. Tan, Richard J. Abdill, Steven J. Burgess, Sylvia F. S. Guerra, Vanessa T. Bortoluzzi, and Olavo B. Amaral
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Quality of reporting ,Preprint ,Peer review ,Publication ,bioRxiv ,Scientific journal ,General Works - Abstract
Abstract Background Preprint usage is growing rapidly in the life sciences; however, questions remain on the relative quality of preprints when compared to published articles. An objective dimension of quality that is readily measurable is completeness of reporting, as transparency can improve the reader’s ability to independently interpret data and reproduce findings. Methods In this observational study, we initially compared independent samples of articles published in bioRxiv and in PubMed-indexed journals in 2016 using a quality of reporting questionnaire. After that, we performed paired comparisons between preprints from bioRxiv to their own peer-reviewed versions in journals. Results Peer-reviewed articles had, on average, higher quality of reporting than preprints, although the difference was small, with absolute differences of 5.0% [95% CI 1.4, 8.6] and 4.7% [95% CI 2.4, 7.0] of reported items in the independent samples and paired sample comparison, respectively. There were larger differences favoring peer-reviewed articles in subjective ratings of how clearly titles and abstracts presented the main findings and how easy it was to locate relevant reporting information. Changes in reporting from preprints to peer-reviewed versions did not correlate with the impact factor of the publication venue or with the time lag from bioRxiv to journal publication. Conclusions Our results suggest that, on average, publication in a peer-reviewed journal is associated with improvement in quality of reporting. They also show that quality of reporting in preprints in the life sciences is within a similar range as that of peer-reviewed articles, albeit slightly lower on average, supporting the idea that preprints should be considered valid scientific contributions.
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- 2020
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3. A Freely Available, Self-Calibrating Software for Automatic Measurement of Freezing Behavior
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Felippe E. Amorim, Thiago C. Moulin, and Olavo B. Amaral
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freezing behavior ,fear conditioning ,software ,fear-related behavior ,video analysis ,Neurosciences. Biological psychiatry. Neuropsychiatry ,RC321-571 - Abstract
Freezing behavior is commonly used as a measure of associative fear memory. It can be measured by a trained observer, but this task is time-consuming and subject to variation. Commercially available software packages can also be used to quantify freezing; however, they can be expensive and usually require various parameters to be adjusted by the researcher, leading to additional work and variability in results. With this in mind, we developed Phobos, a freely available, self-calibrating software that measures freezing in a set of videos using a brief manual quantification performed by the user to automatically adjust parameters. To optimize the software, we used four different video sets with different features in order to determine the most relevant parameters, the amount of videos needed for calibration and the minimum criteria to consider it reliable. The results of four different users were compared in order to test intra- and interobserver variability in manual and automated freezing scores. Our results suggest that Phobos can be an inexpensive, simple and reliable tool for measurement of fear-related behavior, with intra- and interuser variability similar to that obtained with manual scoring.
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- 2019
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4. All publishers are predatory - some are bigger than others
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OLAVO B. AMARAL
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Elsevier ,Peer review ,Preprint ,Science Policy ,Science Evaluation ,Scientific Publishing. ,Science - Published
- 2018
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5. Lost in translation?
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Olavo B. Amaral
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Psychiatry ,RC435-571 - Published
- 2013
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6. Signet-ring cell hilar cholangiocarcinoma: case report
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Marcio F. CHEDID, Eduardo Terra LUCAS, Carlos Thadeu S. CERSKI, Maria Francisca T. LOPES, Olavo B. AMARAL, and Aljamir D. CHEDID
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Surgery ,RD1-811 ,Diseases of the digestive system. Gastroenterology ,RC799-869 - Published
- 2015
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7. Patogênese da encefalopatia hepática
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João Quevedo, Olavo B. Amaral, Roger Walz, and Flávio Kapczinski
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Encefalopatia Hepática. Benzodiazepinas. Receptores de GABA-A. Flumazenil. ,Medicine - Abstract
A encefalopatia hepática (EH) é uma síndrome multifatorial, na qual a função do sistema nervoso central está alterada devido às conseqüências metabólicas da disfunção hepática. Os dois principais componentes das doenças hepáticas que levam à EH são a diminuição no número de hepatócitos funcionantes e o rearranjo vascular, que leva à diminuição na fração de sangue, efetivamente detoxificado pelo fígado. Os sintomas da EH podem variar de déficits cognitivos leves até o coma profundo. Algum grau de morte neuronal pode ser observado em pacientes com EH, como conseqüência da cirrose hepática, ou, na EH avançada, da presença de edema cerebral. No entanto, a maior parte da síndrome neurológica é reversível com a compensação da doença hepática. A etiologia da EH não é totalmente conhecida e trata-se, provavelmente, de um processo multifatorial. Inicialmente, as teorias apontavam para o acúmulo de neurotoxinas que prejudicariam a função neuronal. Mais recentemente, anormalidades em vários sistemas de neurotransmissão foram propostos como causas potencias da EH como, por exemplo, o aumento observado na neurotransmissão GABAérgica. Existe evidência de que este aumento esteja relacionado com o aumento da potenciação GABAérgica por substâncias de ação similar aos benzodiazepínicos, as quais se encontram aumentadas na EH. Com esta evidência em mente, foi tentada a terapia desta síndrome com flumazenil, um antagonista benzodiazepínico, o qual tem mostrado eficácia clínica em uma porcentagem variável de pacientes em estudos recentes. No entanto, ainda não há evidências conclusivas para sustentar uma relação causal entre o aumento de ligantes ao receptor de benzodiazepínicos e os sintomas da EH. É possível que esta relação exista em alguns, mas não em todos os pacientes com esta síndrome.
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- 1999
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8. Mapping the content of comments on bioRxiv and medRxiv preprints
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Clarissa F. D. Carneiro, Gabriel Costa, Kleber Neves, Mariana B. Abreu, Pedro B. Tan, Danielle Rayêe, Flávia Boos, Roberta Andrejew, Tiago Lubiana, Mario Malički, and Olavo B. Amaral
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IntroductionPreprints have been increasingly used in biomedical sciences, providing the opportunity for research to be publicly assessed before journal publication. With the increase in attention over preprints during the COVID-19 pandemic, we decided to assess the content of comments left on preprint platforms.MethodsPreprints posted on bioRxiv and medRxiv in 2020 were accessed through each platform’s API, and a random sample of preprints that had received between 1 and 20 comments was analyzed. Comments were evaluated in triplicate by independent evaluators using an instrument that assessed their features and general content.Results7.3% of preprints received at least 1 comment during a mean follow-up of 7.5 months. Analyzed comments had a median size of 43 words. Criticisms, corrections or suggestions were the most prevalent type of content, followed by compliments or positive appraisals and questions. Most critical comments regarded interpretation, data collection and methodological design, while compliments were usually about relevance and implications.ConclusionsOnly a small percentage of preprints posted in 2020 in bioRxiv and medRxiv received comments in these platforms. When present, however, these comments address content that is similar to that analyzed by traditional peer review. A more precise taxonomy of peer review functions would be desirable to describe whether post-publication peer review fulfills these roles.
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- 2022
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9. Reproducibility: expect less of the scientific paper
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Olavo B. Amaral and Kleber Neves
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Research design ,2019-20 coronavirus outbreak ,Multidisciplinary ,Coronavirus disease 2019 (COVID-19) ,Computer science ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Cooperative behavior ,Research management ,Data science ,Research data - Abstract
Make science more reliable by placing the burden of replicability on the community, not on individual laboratories. Make science more reliable by placing the burden of replicability on the community, not on individual laboratories.
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- 2021
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10. To fix peer review, break it into stages
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Olavo B, Amaral
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Multidisciplinary - Published
- 2022
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11. Identificando Potenciais Preditores de Replicabilidade de Experimentos na Iniciativa Brasileira de Reprodutibilidade
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Kleber Neves, Olavo B. Amaral, Nathalia Fernandes, Ricardo Netto Goulart, and Jimmy Gledson Hayden Pontes Linhares
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- 2021
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12. Avalição do índice de resposta e informações obtidas por autores originais de experimentos na Iniciativa Brasileira de Reprodutibilidade
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Olavo B. Amaral, Nathalia Fernandes, Mariana Abreu, Ricardo Netto Goulart, and Jimmy Gledson Hayden Pontes Linhares
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- 2021
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13. Comparing quality of reporting between preprints and peer-reviewed articles in the biomedical literature
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Victor G. S. Queiroz, Clarissa F. D. Carneiro, Flávia Zacouteguy Boos, Clarissa Haas, Lieve van Egmond, Danielle Rayêe, Olavo B. Amaral, Martin Modrak, Steven J. Burgess, Pedro B. Tan, Vanessa Trindade Bortoluzzi, Gerson D. Guercio, Igor Rodrigues da Costa, Thiago C. Moulin, Felippe E. Amorim, Richard J. Abdill, Carlos Alberto Marques de Carvalho, Evandro A. De-Souza, David E. Henshall, Sylvia F. S. Guerra, and Karina L. Hajdu
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0301 basic medicine ,medicine.medical_specialty ,Pr?-Publica??es como Assunto ,Relat?rio de Pesquisa ,media_common.quotation_subject ,Applied psychology ,Time lag ,lcsh:A ,Scientific journal ,03 medical and health sciences ,0302 clinical medicine ,Paired samples ,Quality of reporting ,Independent samples ,bioRxiv ,medicine ,Literatura de Revis?o como Assunto ,Artigo de Revista ,Quality (business) ,Medical physics ,030212 general & internal medicine ,Preprint ,General Environmental Science ,media_common ,Business Administration ,Företagsekonomi ,Impact factor ,Research ,030104 developmental biology ,Publication ,Observational study ,lcsh:General Works ,Psychology - Abstract
FAPERJ (Funda??o de Amparo ? Pesquisa do Estado do Rio de Janeiro) Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Minist?rio da Sa?de. Secretaria de Vigil?ncia em Sa?de. Instituto Evandro Chagas. Ananindeua, PA, Brasil / Universidade do Estado do Par?. Departamento de Morfologia e Ci?ncias Fisiol?gicas. Bel?m, PA, Brazil / Centro Universit?rio Metropolitano da Amaz?nia. Instituto Euro-Americano de Educa??o, Ci?ncia e Tecnologia. Bel?m, PA, Brazil. University of Groningen. Department of Neuroscience. Section Medical Physiology. Groningen, The Netherlands. Federal University of Rio de Janeiro. Biomedical Sciences Institute. Rio de Janeiro, RJ, Brazil. University of Edinburgh Medical School. Scotland, United Kingdom. Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Universidade Federal de S?o Paulo. Programa de P?s-Gradua??o em Psicobiologia. S?o Paulo, SP, Brazil. University of Minnesota. Department of Psychiatry. Minneapolis, MN, USA. Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Federal University of Rio de Janeiro. Biomedical Sciences Institute. Rio de Janeiro, RJ, Brazil. Institute of Microbiology of the Czech Academy of Sciences. Czech Republic. University of Illinois at Urbana-Champaign. Carl R Woese Institute for Genomic Biology. Urbana, Illinois, USA. Universidade do Estado do Par?. Departamento de Morfologia e Ci?ncias Fisiol?gicas. Bel?m, PA, Brazil / Centro Universit?rio Metropolitano da Amaz?nia. Instituto Euro-Americano de Educa??o, Ci?ncia e Tecnologia. Bel?m, PA, Brazil / Minist?rio da Sa?de. Secretaria de Vigil?ncia em Sa?de. Instituto Evandro Chagas. Ananindeua, PA, Brasil. Universidade Federal do Rio Grande do Sul. Instituto de Ci?ncias B?sicas da Sa?de. Departamento de Bioqu?mica. Rio Grande do Sul, RS, Brazil. Federal University of Rio de Janeiro. Institute of Medical Biochemistry Leopoldo de Meis. Rio de Janeiro, RJ, Brazil. Preprint usage is growing rapidly in the life sciences; however, questions remain on the relative quality of preprints when compared to published articles. An objective dimension of quality that is readily measurable is completeness of reporting, as transparency can improve the reader?s ability to independently interpret data and reproduce findings. In this observational study, we compared random samples of articles published in bioRxiv and in PubMed-indexed journals in 2016 using a quality of reporting questionnaire. We found that peer-reviewed articles had, on average, higher quality of reporting than preprints, although this difference was small. We found larger differences favoring PubMed in subjective ratings of how clearly titles and abstracts presented the main findings and how easy it was to locate relevant reporting information. Interestingly, an exploratory analysis showed that preprints with figures and legends embedded within text had reporting scores similar to PubMed articles. These differences cannot be directly attributed to peer review or editorial processes, as manuscripts might already differ before submission due to greater uptake of preprints by particular research communities. Nevertheless, our results show that quality of reporting in preprints in the life sciences is within a similar range as that of peer-reviewed articles, albeit slightly lower on average, supporting the idea that preprints should be considered valid scientific contributions. An ongoing second phase of the project is comparing preprints to their own published versions in order to more directly assess the effects of peer review.
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- 2020
14. Addressing selective reporting of experiments through predefined exclusion criteria
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Kleber Neves and Olavo B Amaral
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0301 basic medicine ,replication ,bias ,QH301-705.5 ,Science ,General Biochemistry, Genetics and Molecular Biology ,law.invention ,03 medical and health sciences ,Science Forum ,0302 clinical medicine ,Biochemistry and Chemical Biology ,preregistration ,law ,None ,Humans ,Research article ,Biology (General) ,reproducibility ,validation ,General Immunology and Microbiology ,Research ,General Neuroscience ,Feature Article ,Publications ,General Medicine ,Data science ,030104 developmental biology ,Reporting bias ,Work (electrical) ,CLARITY ,Medicine ,Psychology ,030217 neurology & neurosurgery ,Neuroscience - Abstract
The pressure for every research article to tell a clear story often leads researchers in the life sciences to exclude experiments that 'did not work' when they write up their results. However, this practice can lead to reporting bias if the decisions about which experiments to exclude are taken after data have been collected and analyzed. Here we discuss how to balance clarity and thoroughness when reporting the results of research, and suggest that predefining the criteria for excluding experiments might help researchers to achieve this balance.
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- 2020
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15. Author response: Addressing selective reporting of experiments through predefined exclusion criteria
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Olavo B. Amaral and Kleber Neves
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- 2020
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16. Two years into the Brazilian Reproducibility Initiative: reflections on conducting a large-scale replication of Brazilian biomedical science
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Olavo B. Amaral, Clarissa F. D. Carneiro, Ana Paula Wasilewska-Sampaio, Pedro B. Tan, Bruna Valério-Gomes, Mariana Abreu, and Kleber Neves
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Microbiology (medical) ,replication ,Biomedical Research ,RC955-962 ,030231 tropical medicine ,Sample (statistics) ,Scientific literature ,Microbiology ,Rigour ,03 medical and health sciences ,0302 clinical medicine ,Arctic medicine. Tropical medicine ,Political science ,Replication (statistics) ,reproducibility ,Laboratory methods ,evaluation ,Reproducibility of Results ,bepress|Medicine and Health Sciences ,MetaArXiv|Medicine and Health Sciences ,Data science ,QR1-502 ,multicentre studies ,Incentive ,Research Design ,Scale (social sciences) ,Perspective ,Brazil - Abstract
Scientists have increasingly recognized that low methodological and analytical rigor combined with publish-or-perish incentives can make the published scientific literature unreliable. As a response to this, large-scale systematic replications of the literature have emerged as a way to assess the problem empirically. The Brazilian Reproducibility Initiative is one such effort, aimed at estimating the reproducibility of Brazilian biomedical research. Its goal is to perform multicenter replications of a quasi-random sample of at least 60 experiments from Brazilian articles published over a 20-year period, using a set of common laboratory methods. In this article, we describe the challenges of managing a multicenter project with collaborating teams across the country, as well as its successes and failures over the first two years. We end with a brief discussion of the Initiative’s current status and its possible future contributions after the project is concluded in 2021.
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- 2020
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17. Author response: Shifting from fear to safety through deconditioning-update
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Lucas de Oliveira Alvares, Bruno Popik, Olavo B. Amaral, and Felippe E. Amorim
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medicine.medical_specialty ,Physical medicine and rehabilitation ,Deconditioning ,medicine ,Psychology - Published
- 2019
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18. Decision letter: Releasing a preprint is associated with more attention and citations for the peer-reviewed article
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Olavo B. Amaral
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Library science ,Preprint ,Psychology - Published
- 2019
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19. Shifting from fear to safety through deconditioning-update
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Bruno Popik, Felippe E. Amorim, Olavo B. Amaral, and Lucas de Oliveira Alvares
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0301 basic medicine ,Long lasting ,Calcium Channels, L-Type ,QH301-705.5 ,Science ,Spontaneous recovery ,Poison control ,updating ,Traumatic memories ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,0302 clinical medicine ,Deconditioning ,Behavior Therapy ,Memory ,Conditioning, Psychological ,reconsolidation ,medicine ,Animals ,Biology (General) ,Phobias ,General Immunology and Microbiology ,General Neuroscience ,General Medicine ,Extinction (psychology) ,Fear ,medicine.disease ,Rats ,030104 developmental biology ,Medicine ,Rat ,Memory consolidation ,Psychology ,Neuroscience ,030217 neurology & neurosurgery ,Research Article - Abstract
Aversive memories are at the heart of psychiatric disorders such as phobias and post-traumatic stress disorder (PTSD). Here, we present a new behavioral approach in rats that robustly attenuates aversive memories. This method consists of ‘deconditioning’ animals previously trained to associate a tone with a strong footshock by replacing it with a much weaker one during memory retrieval. Our results indicate that deconditioning-update is more effective than traditional extinction in reducing fear responses; moreover, such effects are long lasting and resistant to renewal and spontaneous recovery. Remarkably, this strategy overcame important boundary conditions for memory updating, such as remote or very strong traumatic memories. The same beneficial effect was found in other types of fear-related memories. Deconditioning was mediated by L-type voltage-gated calcium channels and is consistent with computational accounts of mismatch-induced memory updating. Our results suggest that shifting from fear to safety through deconditioning-update is a promising approach to attenuate traumatic memories.
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- 2019
20. Using collaboration networks to identify authorship dependence in meta-analysis results
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Thiago C. Moulin and Olavo B. Amaral
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Research groups ,Eye Movement Desensitization Reprocessing ,Computer science ,01 natural sciences ,Education ,Impact effect ,Stress Disorders, Post-Traumatic ,010104 statistics & probability ,03 medical and health sciences ,0302 clinical medicine ,Bias ,Meta-Analysis as Topic ,Cluster Analysis ,Humans ,030212 general & internal medicine ,0101 mathematics ,Level of analysis ,Research question ,Publications ,Reproducibility of Results ,Data science ,Bias effect ,Research Design ,Meta-analysis ,Sample Size ,Graph (abstract data type) ,Programming Languages ,Algorithms ,Software - Abstract
Meta-analytic methods are powerful resources to summarize the existing evidence concerning a given research question and are widely used in many academic fields. Meta-analyzes can also be used to study sources of heterogeneity and bias among results, which should be considered to avoid inaccuracies. Many of these sources can be related to study authorship, as both methodological heterogeneity and researcher bias may lead to deviations in results between different research groups. In this work, we describe a method to objectively attribute study authorship within a given meta-analysis to different research groups by using graph cluster analysis of collaboration networks. We then provide empirical examples of how the research group of origin can impact effect size in distinct types of meta-analyzes, demonstrating how non-independence between within-group results can bias effect size estimates if uncorrected. Finally, we show that multilevel random-effects models using research group as a level of analysis can be a simple tool for correcting for authorship dependence in results.
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- 2019
21. Using collaboration networks to identify authorship bias in meta-analyses
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Olavo B. Amaral and Thiago C. Moulin
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Impact effect ,Bias effect ,Research groups ,Computer science ,Graph (abstract data type) ,Level of analysis ,Data science ,Research question - Abstract
Meta-analytic methods are powerful resources to summarize the existing evidence concerning a given research question, and are widely used in many academic fields. However, meta-analyses can be vulnerable to various sources of bias, which should be considered to avoid inaccuracies. Many of these sources can be related to study authorship, as both methodological choices and researcher bias may lead to deviations in results between different research groups. In this work, we describe a method to objectively attribute study authorship within a given meta-analysis to different research groups by using graph cluster analysis of collaboration networks. We then provide empirical examples of how the research group of origin can impact effect size in distinct types of meta-analyses, demonstrating how non-independence between within-group results can bias effect size estimates if uncorrected. Finally, we show that multilevel random-effects models using research group as a level of analysis can be a simple tool for correcting biases related to study authorship.
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- 2019
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22. Decision letter: Four erroneous beliefs thwarting more trustworthy research
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Martin C. Michel, Malcolm R. Macleod, and Olavo B. Amaral
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Trustworthiness ,business.industry ,Internet privacy ,business ,Psychology - Published
- 2019
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23. The Brazilian Reproducibility Initiative
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Olavo B. Amaral, Clarissa F. D. Carneiro, Ana Paula Wasilewska-Sampaio, and Kleber Neves
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0301 basic medicine ,Open science ,replication ,Mouse ,Computer science ,QH301-705.5 ,Science ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Science Forum ,0302 clinical medicine ,Biochemistry and Chemical Biology ,open science ,Biology (General) ,reproducibility ,Reproducibility ,metascience ,General Immunology and Microbiology ,General Neuroscience ,Feature Article ,Reproducibility of Results ,Cell Biology ,General Medicine ,Data science ,030104 developmental biology ,biomedical research ,Rat ,Medicine ,Other ,030217 neurology & neurosurgery ,Brazil - Abstract
Most efforts to estimate the reproducibility of published findings have focused on specific areas of research, even though science is usually assessed and funded on a regional or national basis. Here we describe a project to assess the reproducibility of findings in biomedical science published by researchers based in Brazil. The Brazilian Reproducibility Initiative is a systematic, multicenter effort to repeat between 60 and 100 experiments: the project will focus on a set of common methods, repeating each experiment in three different laboratories from a countrywide network. The results, due in 2021, will allow us to estimate the level of reproducibility of biomedical science in Brazil, and to investigate what aspects of the published literature might help to predict whether a finding is reproducible.
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- 2019
24. Different temporal windows for CB1 receptor involvement in contextual fear memory destabilisation in the amygdala and hippocampus
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Jonathan L C Lee, Felippe E Amorim, Lindsey F Cassini, and Olavo B Amaral
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nervous system ,Science ,Medicine - Abstract
Reconsolidation is a process in which re-exposure to a reminder causes a previously acquired memory to undergo a process of destabilisation followed by subsequent restabilisation. Different molecular mechanisms have been postulated for destabilisation in the amygdala and hippocampus, including CB1 receptor activation, protein degradation and AMPA receptor exchange; however, most of the amygdala studies have used pre-reexposure interventions, while those in the hippocampus have usually performed them after reexposure. To test whether the temporal window for destabilisation is similar across both structures, we trained Lister Hooded rats in a contextual fear conditioning task, and 1 day later performed memory reexposure followed by injection of either the NMDA antagonist MK-801 (0.1 mg/kg) or saline in order to block reconsolidation. In parallel, we also performed local injections of either the CB1 antagonist SR141716A or its vehicle in the hippocampus or in the amygdala, either immediately before or immediately after reactivation. Infusion of SR141716A in the hippocampus prevented the reconsolidation-blocking effect of MK-801 when performed after reexposure, but not before it. In the amygdala, meanwhile, pre-reexposure infusions of SR141716A impaired reconsolidation blockade by MK-801, although the time-dependency of this effect was not as clear as in the hippocampus. Our results suggest the temporal windows for CB1-receptor-mediated memory destabilisation during reconsolidation vary between brain structures. Whether this reflects different time windows for engagement of these structures or different roles played by CB1 receptors in destabilisation across structures remains an open question for future studies.
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- 2019
25. A construção do cérebro dependente: uma análise da mídia brasileira e da literatura científica sobre adição a tecnologias
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Olavo B. Amaral and Lara S. Junqueira
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business.industry ,Addiction ,media_common.quotation_subject ,General Medicine ,Scientific literature ,Technology addiction ,Mental health ,Argument ,Similarity (psychology) ,The Internet ,Empirical evidence ,Psychology ,business ,media_common ,Cognitive psychology - Abstract
Neuroscience is frequently used as an argument in various debates on mental health, such as the definition of some behaviors as pathological. To understand how this happens in the Brazilian media, we analyzed neuroscientific facts mentioned in articles about a controversial diagnosis: internet and or/video gaming addiction. Of 85 articles located in web searches of seven major press vehicles, 25% made allusions to neuroscience. The analysis of two frequently mentioned facts (the similarity between cerebral alterations observed in drug and technology addictions and the release of dopamine as a mediator of reward and addiction to video games) showed inconsistencies between media claims and the available empirical evidence. However, similar biases were already observable in the scientific literature itself, suggesting that the theory of a “dependent brain” in behavioral and chemical addictions seems to be favored by both journalists and scientists
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- 2016
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26. Author response: The Brazilian Reproducibility Initiative
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Clarissa F. D. Carneiro, Olavo B. Amaral, Kleber Neves, and Ana Paula Wasilewska-Sampaio
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Reproducibility ,medicine.medical_specialty ,business.industry ,medicine ,Medical physics ,business - Published
- 2018
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27. Different temporal windows for contextual fear memory destabilisation in the amygdala and hippocampus
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Lindsey de Freitas Cassini, Olavo B. Amaral, Felippe E. Amorim, and Jonathan L.C. Lee
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0303 health sciences ,business.industry ,Antagonist ,Hippocampus ,AMPA receptor ,Protein degradation ,Amygdala ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,nervous system ,NMDA receptor ,Medicine ,Memory consolidation ,Destabilisation ,business ,Neuroscience ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
Reconsolidation is a process in which re-exposure to a reminder causes a previously acquired memory to undergo a process of destabilisation followed by subsequent restabilisation. Different molecular mechanisms have been postulated for destabilisation in the amygdala and hippocampus, including CB1 receptor activation, protein degradation and AMPA receptor exchange; however, most of the amygdala studies have used pre-re-exposure interventions, while those in the hippocampus have performed them after re-exposure. To test whether the temporal window for destabilisation is similar across both structures, we trained Lister Hooded rats in a contextual fear conditioning task, and 1 day later performed memory re-exposure followed by injection of either the NMDA antagonist MK-801 (0.1 mg/kg) or saline in order to block reconsolidation. In parallel, we also performed local injections of either the CB1 antagonist SR141716A or its vehicle in the hippocampus or in the amygdala, either immediately before or immediately after reactivation. Infusion of SR141716A in the hippocampus prevented the reconsolidation-blocking effect of MK-801 when performed after re-exposure, but not before it. In the amygdala, meanwhile, pre-reexposure infusions of SR141716A impaired reconsolidation blockade by MK-801, although the time-dependency of this effect was not as clear as in the hippocampus. Our results suggest the temporal windows for CB1-receptor-mediated memory destabilisation during reconsolidation vary between brain structures. Whether this reflects different time windows for engagement of these structures or different roles played by CB1 receptors in destabilisation across structures remains an open question for future studies.
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- 2018
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28. Different temporal windows for CB1 receptor involvement in contextual fear memory destabilisation in the amygdala and hippocampus
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Jonathan L C, Lee, Felippe E, Amorim, Lindsey F, Cassini, and Olavo B, Amaral
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Male ,Metabolic Processes ,Time Factors ,Conditioning, Classical ,Social Sciences ,Hippocampus ,Biochemistry ,Cognition ,Learning and Memory ,Receptor, Cannabinoid, CB1 ,Behavioral Conditioning ,Medicine and Health Sciences ,Psychology ,Cognitive Impairment ,Mammals ,Behavior, Animal ,Cognitive Neurology ,Brain ,Eukaryota ,Fear ,Animal Models ,Amygdala ,Neurology ,Experimental Organism Systems ,Models, Animal ,Long Term Memory ,Vertebrates ,Rimonabant ,Anatomy ,Research Article ,Cognitive Neuroscience ,Research and Analysis Methods ,Rodents ,Model Organisms ,Memory ,Animals ,Receptors, AMPA ,Cannabinoid Receptor Antagonists ,Behavior ,Organisms ,Biology and Life Sciences ,Proteins ,Rats ,Metabolism ,nervous system ,Proteolysis ,Amniotes ,Animal Studies ,Cognitive Science ,Dizocilpine Maleate ,Excitatory Amino Acid Antagonists ,Fear Conditioning ,Neuroscience - Abstract
Reconsolidation is a process in which re-exposure to a reminder causes a previously acquired memory to undergo a process of destabilisation followed by subsequent restabilisation. Different molecular mechanisms have been postulated for destabilisation in the amygdala and hippocampus, including CB1 receptor activation, protein degradation and AMPA receptor exchange; however, most of the amygdala studies have used pre-reexposure interventions, while those in the hippocampus have usually performed them after reexposure. To test whether the temporal window for destabilisation is similar across both structures, we trained Lister Hooded rats in a contextual fear conditioning task, and 1 day later performed memory reexposure followed by injection of either the NMDA antagonist MK-801 (0.1 mg/kg) or saline in order to block reconsolidation. In parallel, we also performed local injections of either the CB1 antagonist SR141716A or its vehicle in the hippocampus or in the amygdala, either immediately before or immediately after reactivation. Infusion of SR141716A in the hippocampus prevented the reconsolidation-blocking effect of MK-801 when performed after reexposure, but not before it. In the amygdala, meanwhile, pre-reexposure infusions of SR141716A impaired reconsolidation blockade by MK-801, although the time-dependency of this effect was not as clear as in the hippocampus. Our results suggest the temporal windows for CB1-receptor-mediated memory destabilisation during reconsolidation vary between brain structures. Whether this reflects different time windows for engagement of these structures or different roles played by CB1 receptors in destabilisation across structures remains an open question for future studies.
- Published
- 2018
29. Chronic in vivo optogenetic stimulation modulates neuronal excitability, spine morphology, and Hebbian plasticity in the mouse hippocampus
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Lyvia Lintzmaier Petiz, Olavo B. Amaral, Jessica Winne, Thiago C. Moulin, Rafael V. Lima da Cruz, Richardson N. Leão, Danielle Rayêe, and Roberto G. Maia
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Dendritic spine ,Cognitive Neuroscience ,Dendritic Spines ,Hippocampus ,Action Potentials ,Stimulation ,AMPA receptor ,Optogenetics ,050105 experimental psychology ,03 medical and health sciences ,Mice ,0302 clinical medicine ,synaptic scaling ,Animals ,long-term depression ,0501 psychology and cognitive sciences ,optogenetics ,Long-term depression ,long-term potentiation ,Neurons ,synaptic plasticity ,Synaptic scaling ,Neuronal Plasticity ,Chemistry ,musculoskeletal, neural, and ocular physiology ,05 social sciences ,Long-term potentiation ,Hebbian theory ,nervous system ,Synaptic plasticity ,Synapses ,NMDA receptor ,Neuroscience ,030217 neurology & neurosurgery - Abstract
Prolonged increases in excitation can trigger cell-wide homeostatic responses in neurons, altering membrane channels, promoting morphological changes and ultimately reducing synaptic weights. However, how synaptic downscaling interacts with classical forms of Hebbian plasticity is still unclear. In this study, we investigated whether chronic optogenetic stimulation of hippocampus CA1 pyramidal neurons in freely-moving mice could (a) cause morphological changes reminiscent of homeostatic scaling, (b) modulate synaptic currents that might compensate for chronic excitation, and (c) lead to alterations in Hebbian plasticity. After 24 h of stimulation with 15-ms blue light pulses every 90 s, dendritic spine density and area were reduced in the CA1 region of mice expressing channelrhodopsin-2 (ChR2) when compared to controls. This protocol also reduced the amplitude of mEPSCs for both the AMPA and NMDA components in ex vivo slices obtained from ChR2-expressing mice immediately after the end of stimulation. Lastly, chronic stimulation impaired the induction of LTP and facilitated that of LTD in these slices. Our results indicate that neuronal responses to prolonged network excitation can modulate subsequent Hebbian plasticity in the hippocampus.
- Published
- 2018
30. Calcineurin inhibition blocks within-, but not between-session fear extinction in mice
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Clarissa F. D. Carneiro, Lara S. Junqueira, Marina M. C. Gonçalves, Olavo B. Amaral, Thiago C. Moulin, and Suellen Almeida-Corrêa
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Male ,Cognitive Neuroscience ,Calcineurin Inhibitors ,Conditioning, Classical ,Engram ,Motor Activity ,Cycloheximide ,Tacrolimus ,Extinction, Psychological ,Developmental psychology ,Mice ,Cellular and Molecular Neuroscience ,chemistry.chemical_compound ,Cyclosporin a ,Animals ,natural sciences ,Fear conditioning ,Association (psychology) ,Research ,Calcineurin ,Fear ,social sciences ,Extinction (psychology) ,musculoskeletal system ,humanities ,Infusions, Intraventricular ,Neuropsychology and Physiological Psychology ,chemistry ,Cyclosporine ,Conditioning ,Psychology ,Neuroscience ,geographic locations - Abstract
Memory extinction involves the formation of a new associative memory that inhibits a previously conditioned association. Nonetheless, it could also depend on weakening of the original memory trace if extinction is assumed to have multiple components. The phosphatase calcineurin (CaN) has been described as being involved in extinction but not in the initial consolidation of fear learning. With this in mind, we set to study whether CaN could have different roles in distinct components of extinction. Systemic treatment with the CaN inhibitors cyclosporin A (CsA) or FK-506, as well as i.c.v. administration of CsA, blocked within-session, but not between-session extinction or initial learning of contextual fear conditioning. Similar effects were found in multiple-session extinction of contextual fear conditioning and in auditory fear conditioning, indicating that CaN is involved in different types of short-term extinction. Meanwhile, inhibition of protein synthesis by cycloheximide (CHX) treatment did not affect within-session extinction, but disrupted fear acquisition and slightly impaired between-session extinction. Our results point to a dissociation of within- and between-session extinction of fear conditioning, with the former being more dependent on CaN activity and the latter on protein synthesis. Moreover, the modulation of within-session extinction did not affect between-session extinction, suggesting that these components are at least partially independent.
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- 2015
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31. Effect size and statistical power in the rodent fear conditioning literature - A systematic review
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Clarissa F D, Carneiro, Thiago C, Moulin, Malcolm R, Macleod, and Olavo B, Amaral
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Science Policy ,Statistics as Topic ,Publication Ethics ,Social Sciences ,Rodentia ,Research and Analysis Methods ,Rodents ,Mice ,Learning and Memory ,Behavioral Conditioning ,Conditioning, Psychological ,Medicine and Health Sciences ,Animals ,Learning ,Psychology ,False Positive Reactions ,Research Integrity ,Mammals ,Pharmacology ,Behavior ,Models, Statistical ,Organisms ,Cognitive Psychology ,Reproducibility of Results ,Biology and Life Sciences ,Eukaryota ,Fear ,Research Assessment ,Probability Theory ,Rats ,Research Design ,Bibliometrics ,Behavioral Pharmacology ,Sample Size ,Physical Sciences ,Citation Analysis ,Vertebrates ,Amniotes ,Cognitive Science ,Journal Impact Factor ,Fear Conditioning ,Mathematics ,Research Article ,Statistical Distributions ,Neuroscience - Abstract
Proposals to increase research reproducibility frequently call for focusing on effect sizes instead of p values, as well as for increasing the statistical power of experiments. However, it is unclear to what extent these two concepts are indeed taken into account in basic biomedical science. To study this in a real-case scenario, we performed a systematic review of effect sizes and statistical power in studies on learning of rodent fear conditioning, a widely used behavioral task to evaluate memory. Our search criteria yielded 410 experiments comparing control and treated groups in 122 articles. Interventions had a mean effect size of 29.5%, and amnesia caused by memory-impairing interventions was nearly always partial. Mean statistical power to detect the average effect size observed in well-powered experiments with significant differences (37.2%) was 65%, and was lower among studies with non-significant results. Only one article reported a sample size calculation, and our estimated sample size to achieve 80% power considering typical effect sizes and variances (15 animals per group) was reached in only 12.2% of experiments. Actual effect sizes correlated with effect size inferences made by readers on the basis of textual descriptions of results only when findings were non-significant, and neither effect size nor power correlated with study quality indicators, number of citations or impact factor of the publishing journal. In summary, effect sizes and statistical power have a wide distribution in the rodent fear conditioning literature, but do not seem to have a large influence on how results are described or cited. Failure to take these concepts into consideration might limit attempts to improve reproducibility in this field of science.
- Published
- 2017
32. On the transdiagnostic nature of peripheral biomarkers in major psychiatric disorders: a systematic review
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Jairo Vinícius Pinto, Olavo B. Amaral, Thiago C. Moulin, Flávio Kapczinski, and Márcia Kauer-Sant'Anna
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medicine.medical_specialty ,Bipolar Disorder ,Cognitive Neuroscience ,03 medical and health sciences ,Behavioral Neuroscience ,0302 clinical medicine ,Humans ,Medicine ,Bipolar disorder ,Medical diagnosis ,Psychiatry ,Depressive Disorder, Major ,business.industry ,Mental Disorders ,Diagnostic marker ,medicine.disease ,030227 psychiatry ,Peripheral ,Neuropsychology and Physiological Psychology ,Schizophrenia ,Biomarker (medicine) ,Major depressive disorder ,Biological psychiatry ,business ,Biomarkers ,030217 neurology & neurosurgery - Abstract
The search for biomarkers has been one of the leading endeavours in biological psychiatry; nevertheless, in spite of hundreds of publications, hardly any marker has proved useful in clinical practice. To study how biomarker research has progressed over the years, we performed a systematic review of the literature to evaluate (a) the most studied peripheral molecular markers in major psychiatric disorders, (b) the main experimental design features of studies in which they are proposed as biomarkers and (c) whether their patterns of variation are similar across disorders. An automated search revealed that, out of the six molecules most commonly present as keywords in articles studying plasmatic markers of schizophrenia, major depressive disorder or bipolar disorder, five (BDNF, TNF-alpha, IL-6, C-reactive protein and cortisol) were the same across the three diagnoses. An analysis of the literature on these molecules showed that, whilst 66% of original articles compared their levels between patients and controls, only 35% were longitudinal studies, and only 10% presented an evaluation of diagnostic efficacy, a pattern that has not changed significantly over two decades. Interestingly, these molecules varied similarly across the three disorders, suggesting them to be nonspecific systemic consequences of psychiatric illness rather than diagnostic markers. On the basis of this, we discuss how research fragmentation between diagnoses and publication practices rewarding positive findings may be directing the biomarker literature to nonspecific targets, and what steps could be taken to increase clinical translation in the field.
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- 2016
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33. Lost in translation?
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Olavo B. Amaral
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Psychiatry and Mental health ,lcsh:RC435-571 ,lcsh:Psychiatry ,General Medicine ,Psychology - Published
- 2016
34. Transcriptional profiling of striatal neurons in response to single or concurrent activation of dopamine D2, adenosine A2A and metabotropic glutamate type 5 receptors: Focus on beta-synuclein expression
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Laia Canela, Elisabet Selga, Francisco Ciruela, Juan M. García-Martínez, Carlos J. Ciudad, Enric I. Canela, Carme Lluís, Víctor Fernández-Dueñas, Jordi Alberch, Rafael Franco, Olavo B. Amaral, and Véronique Noé
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Receptor, Adenosine A2A ,Receptor, Metabotropic Glutamate 5 ,animal diseases ,Blotting, Western ,Class C GPCR ,Biology ,Real-Time Polymerase Chain Reaction ,Receptors, Metabotropic Glutamate ,Rats, Sprague-Dawley ,beta-Synuclein ,Genetics ,Animals ,RNA, Messenger ,Cells, Cultured ,Oligonucleotide Array Sequence Analysis ,Neurons ,Receptors, Dopamine D2 ,Reverse Transcriptase Polymerase Chain Reaction ,Metabotropic glutamate receptor 5 ,Gene Expression Profiling ,Metabotropic glutamate receptor 4 ,Metabotropic glutamate receptor 7 ,Metabotropic glutamate receptor 6 ,General Medicine ,Corpus Striatum ,Rats ,nervous system diseases ,Cell biology ,nervous system ,Biochemistry ,Metabotropic glutamate receptor ,alpha-Synuclein ,Metabotropic glutamate receptor 1 ,Female ,Metabotropic glutamate receptor 3 ,Biomarkers - Abstract
G protein-coupled receptor oligomerization is a concept which is changing the understanding of classical pharmacology. Both, oligomerization and functional interaction between adenosine A 2A, dopamine D 2 and metabotropic glutamate type 5 receptors have been demonstrated in the striatum. However, the transcriptional consequences of receptors co-activation are still unexplored. We aim here to determine the changes in gene expression of striatal primary cultured neurons upon isolated or simultaneous receptor activation. Interestingly, we found that 95 genes of the total analyzed (15,866 transcripts and variants) changed their expression in response to simultaneous stimulation of all three receptors. Among these genes, we focused on the β-synuclein (β-Syn) gene ( SCNB) . Quantitative PCR verified the magnitude and direction of change in expression of SCNB . Since β-Syn belongs to the homologous synuclein family and may be considered a natural regulator of α-synuclein (α-Syn), it has been proposed that β-Syn might act protectively against α-Syn neuropathology.
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- 2012
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35. Plasma membrane diffusion of g protein-coupled receptor oligomers
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Olavo B. Amaral, Rafael Franco, Jorge Gandía, Stephen J. Hill, Stephen J. Briddon, Carme Lluís, Francisco Ciruela, and Sergi Ferré
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Receptor, Adenosine A2A ,Recombinant Fusion Proteins ,Immunoblotting ,B-cell receptor ,Membrane diffusion ,CHO Cells ,Transfection ,Polymerase Chain Reaction ,Receptors, G-Protein-Coupled ,Diffusion ,Cell membrane ,Bimolecular fluorescence complementation ,Cricetulus ,Bacterial Proteins ,Cricetinae ,Cyclic AMP ,Fluorescence Resonance Energy Transfer ,medicine ,Animals ,G protein-coupled receptor ,Receptor ,Molecular Biology ,Cells, Cultured ,Receptor, Adenosine A1 ,Chemistry ,Chinese hamster ovary cell ,Cell Membrane ,Adenosine receptor ,Cell Biology ,Transport protein ,Receptor oligomerization ,Luminescent Proteins ,Protein Transport ,Spectrometry, Fluorescence ,medicine.anatomical_structure ,Biochemistry ,Biophysics ,Dimerization - Abstract
G protein-coupled receptors are known to form homo-and heteromers at the plasma membrane, but the molecular properties of these oligomers are relatively unknown. Here, we show a method that allows the diffusion of G protein-coupled receptors oligomers in the plasma membrane to be monitored in single cells by combining Bimolecular Fluorescence Complementation and Fluorescence Correlation Spectroscopy. With this approach we have measured, for the first time, the membrane diffusional characteristics of adenosine A(1) and A(2A) receptor homo-and heterodimers in Chinese Hamster Ovary cells. Interestingly, both homodimers display similar diffusion co-efficients (D) when expressed in living cells (D=5.0 and 4.8x10(-9) cm(2)/s, respectively) but the heterodimer formed by these receptors exhibit a significantly faster plasma membrane diffusion co-efficent (D=5.6x10(-9) cm(2)/s) when compared to the adenosine A(1) receptor tagged with the full-length yellow fluorescent protein (D=4.0x10(-9) cm(2)/s). Overall, these results demonstrate differences in plasma membrane diffusion between adenosine receptor homo-and heterodimers, providing new insights into the molecular plasticity of G protein-coupled receptor oligomerization.
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- 2008
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36. Detection of higher-order G protein-coupled receptor oligomers by a combined BRET-BiFC technique
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Rafael Franco, Aroa Soriano, Carme Lluís, Olavo B. Amaral, Jorge Gandía, Francisco Ciruela, and Jorge Galino
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Receptor, Adenosine A2A ,Recombinant Fusion Proteins ,Biophysics ,GPCR oligomer ,Protomer ,Biochemistry ,Cell Line ,Bimolecular fluorescence complementation ,Bacterial Proteins ,G protein-coupled receptors ,Structural Biology ,Fluorescence Resonance Energy Transfer ,Genetics ,Humans ,Bioluminescence ,Adenosine receptors ,Receptor ,Molecular Biology ,G protein-coupled receptor ,Chemistry ,Cell Biology ,Adenosine receptor ,Receptor oligomerization ,Luminescent Proteins ,Förster resonance energy transfer ,Dimerization - Abstract
Despite some caveats, G protein-coupled receptor oligomerization is a phenomenon that is becoming largely accepted. Within these oligomers, however, stoichiometry remains to be elucidated. Here, by using bimolecular fluorescence complementation, we visualized adenosine A2A receptor homodimers in living cells, showing no apparent difference in the subcellular distribution when compared to the YFP-labelled adenosine A2A receptor protomer. Interestingly, the combination of bimolecular fluorescence complementation and bioluminescence resonance energy transfer techniques allowed us to detect the occurrence of adenosine A2A receptors oligomers containing more than two protomers. These results provide new insights into the molecular composition of G protein-coupled receptor oligomers.Structured summaryMINT-6700472:A2A (uniprotkb:P29274), A2A (uniprotkb:P29274) and A2A (uniprotkb:P29274) physically interact (MI:0218) by bioluminescence resonance energy transfer (MI:0012)MINT-6699330:A2A (uniprotkb:P29274) and A2A (uniprotkb:P29274) physically interact (MI:0218) by bimolecular fluorescence complementation (MI:0809)MINT-6699346:A2A (uniprotkb:P29274) and A2A (uniprotkb:P29274) physically interact (MI:0218) by bioluminescence resonance energy transfer (MI:0012)
- Published
- 2008
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37. Transient Disruption of Fear-Related Memory by Post-Retrieval Inactivation of Gastrin-Releasing Peptide or N-Methyl-D-Aspartate Receptors in the Hippocampus
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Olavo B. Amaral, Tatiana Luft, Gilberto Schwartsmann, and Rafael Roesler
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Male ,Time Factors ,Hippocampus ,Hippocampal formation ,Receptors, N-Methyl-D-Aspartate ,Cellular and Molecular Neuroscience ,Developmental Neuroscience ,Avoidance Learning ,Reaction Time ,Animals ,Rats, Wistar ,Analysis of Variance ,Antagonist ,Glutamate receptor ,Valine ,Fear ,Peptide Fragments ,Rats ,Bombesin receptor ,Intracellular signal transduction ,Gastrin-Releasing Peptide ,Neurology ,Mental Recall ,NMDA receptor ,Bombesin ,Memory consolidation ,Psychology ,Excitatory Amino Acid Antagonists ,Neuroscience - Abstract
Molecular accounts of memory consolidation suggest that new learning generates persistent synaptic modifications through activation of an extensive set of neuronal receptors and intracellular signal transduction pathways, accompanied by RNA and protein synthesis. This traditional cellular consolidation theory has been challenged by evidence that reactivation of a previously consolidated memory might render this memory again susceptible to disruption by amnesic treatments, a process generally referred to as reconsolidation. Current evidence indicates that reconsolidation can be disrupted by administration of a variety of pharmacological agents after memory reactivation. Previous studies have indicated that the gastrin-releasing preferring type of bombesin receptor (GRPR) and the N-methyl-D-aspartate glutamate receptor (NMDAR) in the rat hippocampus are involved in consolidation of inhibitory avoidance (IA), a fear-related memory task. We show here that blockade of hippocampal GRPRs or NMDARs after memory reactivation temporarily disrupts memory retention. Post-retrieval intra-hippocampal infusion of the GRPR antagonist RC-3095 or the NMDAR antagonist aminophosphonopentanoic acid (AP5) produced an impairment of IA performance tested 2 days after training in rats. However, this impairment was transient and recovered to levels of control rats in a subsequent test 3 days after training. The drug effects were only present after memory reactivation and not in its absence. These findings provide evidence that GRPR or NMDAR inactivation after retrieval can impair fear memory.
- Published
- 2008
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38. Duration of environmental enrichment influences the magnitude and persistence of its behavioral effects on mice
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Gisele Hansel, Diogo O. Souza, Ivan Izquierdo, Olavo B. Amaral, and Rafael da Silva Vargas
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Male ,Environmental enrichment ,Time Factors ,Age Factors ,Physiology ,Experimental and Cognitive Psychology ,Environment ,Motor Activity ,Affect (psychology) ,Housing, Animal ,Open field ,Developmental psychology ,Persistence (computer science) ,Mice ,Behavioral Neuroscience ,Early adulthood ,Exploratory Behavior ,Animals ,Weaning ,Habituation ,Habituation, Psychophysiologic ,Psychology ,Beneficial effects - Abstract
A wide range of data in the literature suggests that environmental enrichment has beneficial effects on various cognitive parameters in rodents. However, the magnitude of these effects and their persistence after the cessation of enrichment vary markedly across studies, with the use of different enrichment protocols probably playing a significant role in this variation. Using an open field habituation task as a paradigm, we investigate whether the duration and starting age of environmental enrichment affect the magnitude and persistence of its behavioral effects on male CF-1 albino mice. Our data shows that, at least in our protocol, (a) environmental enrichment, both after weaning and in early adulthood, decreases locomotion in an open field task, probably by increasing habituation; (b) a minimum enrichment period is necessary to induce this behavioral effect; (c) the effect of enrichment can persist at least partially for many months after its cessation; and (d) the degree of this persistence appears to be somewhat greater in animals exposed to longer durations of enrichment.
- Published
- 2008
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39. Temporary inactivation of the dorsal hippocampus induces a transient impairment in retrieval of aversive memory
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Ivan Izquierdo, Rafael Roesler, Olavo B. Amaral, Tatiana Luft, and Martín Cammarota
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Male ,Time Factors ,Central nervous system ,Hippocampus ,Inhibitory postsynaptic potential ,Statistics, Nonparametric ,Behavioral Neuroscience ,chemistry.chemical_compound ,Avoidance Learning ,Reaction Time ,medicine ,Animals ,Transient (computer programming) ,Rats, Wistar ,GABA Agonists ,Memory Disorders ,Behavior, Animal ,Muscimol ,Memoria ,Rats ,Blockade ,Inhibition, Psychological ,medicine.anatomical_structure ,chemistry ,Memory consolidation ,Psychology ,Neuroscience - Abstract
The reconsolidation hypothesis, which predicts that consolidated memories become labile and sensitive to amnestic agents upon reactivation, has been one of the most debated topics in memory research over recent years. One of the main criticisms to this hypothesis is the fact that some studies have shown the effects of "reconsolidation blockade" to be transient. Here we show that muscimol inactivation of the dorsal hippocampus following memory reactivation produces a reversible impairment of step-down inhibitory avoidance memory in rats. Moreover, we show that the reversal of this effect is dependent on the passage of time, and not on repeated testing. The implications of the findings to the interpretation of the phenomenon of transient retrieval impairment induced by post-reactivation pharmacological interventions on memory systems are discussed.
- Published
- 2007
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40. Colangiocarcinoma hilar com células em anel de sinete: relato de caso
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Aljamir Duarte Chedid, Eduardo Terra Lucas, Olavo B. Amaral, Maria Francisca T Lopes, Marcio F. Chedid, and Carlos Thadeu Schmidt Cerski
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Pathology ,medicine.medical_specialty ,RD1-811 ,business.industry ,Signet ring cell ,RC799-869 ,General Medicine ,Diseases of the digestive system. Gastroenterology ,medicine.disease ,Letter To The Editor ,Text mining ,Carcinoma ,Medicine ,Surgery ,business - Published
- 2015
41. Multifactoriality in Psychiatric Disorders: A Computational Study of Schizophrenia
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Olavo B. Amaral, Adriano B. L. Tort, and Rodrigo Pavão
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Computational model ,medicine.medical_specialty ,Models, Statistical ,Endophenotypes ,Causes of mental disorders ,Regular Article ,parametric exploration ,multifactoriality ,medicine.disease ,Spatial memory ,attractor network ,schizophrenia ,Psychiatry and Mental health ,computational model ,Schizophrenia ,Endophenotype ,medicine ,Humans ,Psychology ,Psychiatry ,complexity ,Attractor network - Abstract
The search for biological causes of mental disorders has up to now met with limited success, leading to growing dissatisfaction with diagnostic classifications. However, it is questionable whether most clinical syndromes should be expected to correspond to specific microscale brain alterations, as multiple low-level causes could lead to similar symptoms in different individuals. In order to evaluate the potential multifactoriality of alterations related to psychiatric illness, we performed a parametric exploration of published computational models of schizophrenia. By varying multiple parameters simultaneously, such as receptor conductances, connectivity patterns, and background excitation, we generated 5625 different versions of an attractor-based network model of schizophrenia symptoms. Among networks presenting activity within valid ranges, 154 parameter combinations out of 3002 (5.1%) presented a phenotype reminiscent of schizophrenia symptoms as defined in the original publication. We repeated this analysis in a model of schizophrenia-related deficits in spatial working memory, building 3125 different networks, and found that 41 (4.9%) out of 834 networks with valid activity presented schizophrenia-like alterations. In isolation, none of the parameters in either model showed adequate sensitivity or specificity to identify schizophrenia-like networks. Thus, in computational models of schizophrenia, even simple network phenotypes related to the disorder can be produced by a myriad of causes at the molecular and circuit levels. This suggests that unified explanations for either the full syndrome or its behavioral and network endophenotypes are unlikely to be expected at the genetic and molecular levels.
- Published
- 2015
42. Behavioral and genoprotective effects of Vaccinium berries intake in mice
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Maria Rosana Ramirez, Laura A. Geracitano, Maria do Carmo Bassols Raseira, Olavo B. Amaral, Ivan Izquierdo, Amélia T. Henriques, and Daniela M. Barros
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Male ,Antioxidant ,medicine.drug_class ,DNA damage ,medicine.medical_treatment ,Blueberry Plants ,Clinical Biochemistry ,Hippocampus ,Biology ,Pharmacology ,Toxicology ,medicine.disease_cause ,Biochemistry ,Anxiolytic ,Anthocyanins ,Mice ,Behavioral Neuroscience ,chemistry.chemical_compound ,Botany ,Avoidance Learning ,medicine ,Animals ,Habituation ,Habituation, Psychophysiologic ,Maze Learning ,Biological Psychiatry ,Cerebral Cortex ,Behavior, Animal ,Plant Extracts ,biology.organism_classification ,Anti-Anxiety Agents ,chemistry ,Fruit ,Anthocyanin ,Comet Assay ,Oxidative stress ,DNA Damage ,Vaccinium - Abstract
Studies have shown that supplementation with berries rich in anthocyanins are effective in reducing oxidative stress associated with aging, and are beneficial in reversing age-related neuronal and behavioral changes. However, there are few reports on other biological activities of these polyphenols, such as genoprotective effects. The present experiments were performed to study the possible effects of 30-day administration of a lyophilized extract of Vaccinium ashei berries on cognitive performance using step-down inhibitory avoidance, open-field habituation and elevated plus-maze tasks, as well as on DNA damage in the hippocampus and cerebral cortex. The present study showed that the extract significantly enhanced long-term memory in the inhibitory avoidance task, induced an increase in the number of crossings during open-field habituation and had an anxiolytic effect in the elevated plus-maze task. Moreover, the extract reduced oxidative DNA damage in brain tissue in vitro. These results suggest that supplementation with V. ashei berries to mice improves performance on memory tasks and has a protective effect on DNA damage, possibly due to the antioxidant activity of polyphenols, including anthocyanins.
- Published
- 2006
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43. Isolated central nervous system histoplasmosis in immunocompetent hosts: A series of 11 cases
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Olavo B. Amaral, Gisela Unis, Marcio F. Chedid, Flávio Moreira de Oliveira, Pedro Schestatsky, and Luiz Carlos Severo
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Adult ,Male ,Microbiology (medical) ,Pathology ,medicine.medical_specialty ,Adolescent ,medicine.medical_treatment ,Central nervous system ,Histoplasmosis ,Central Nervous System Infections ,Cerebrospinal fluid ,Humans ,Medicine ,Mycosis ,Aged ,Retrospective Studies ,General Immunology and Microbiology ,business.industry ,Brain ,Immunosuppression ,General Medicine ,Middle Aged ,medicine.disease ,Shunt (medical) ,Hydrocephalus ,Infectious Diseases ,medicine.anatomical_structure ,Child, Preschool ,Female ,Immunocompetence ,business - Abstract
Histoplasmosis of the central nervous system occurs in a significant percentage of patients with Histoplasma capsulatum infection, but has usually been described in association with immunosuppression and/or disseminated histoplasmosis. We aim to review the clinical and laboratory features of isolated histoplasmosis of the central nervous system in the immunocompetent host by presenting a series of 11 cases with this condition. Most of these patients presented with headache, meningeal irritation signs and mental status changes, comprising a somewhat different picture from that described in immunosuppressed patients. Moreover, almost all patients had signs of ventricular dilatation in neuroimaging studies, and 8 of the 11 patients had a ventriculoperitoneal shunt at the time of diagnosis, suggesting hydrocephalus to be an important feature of this condition and/or the possibility of shunt infection by the fungus. Immunodiffusion analysis of the cerebrospinal fluid appeared to be the most efficient way to reach the diagnosis and should be considered in immunocompetent patients with chronic lymphocytic meningitis, especially in those who have ventricular shunt or live in endemic areas of Histoplasma capsulatum.
- Published
- 2006
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44. Altered behavioural response to acute stress in mice lacking cellular prion protein
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Ricardo R. Brentani, Roger Walz, Patrícia Barreto Costa Nico, Lauro Wichert-Ana, Marino Muxfeldt Bianchin, Bruno Lobão Soares, Vilma R. Martins, Isabel Cristina Rockenbach, Elsa Regina do Canto Vinade, Ricardo Guarnieri, Fernanda de-Paris, Américo Ceiki Sakamoto, Fabrício Calvo, Olavo B. Amaral, and Ivan Izquierdo
- Subjects
Male ,Restraint, Physical ,medicine.medical_specialty ,Central nervous system ,Amygdala ,Mice ,Behavioral Neuroscience ,Internal medicine ,Reaction Time ,medicine ,Animals ,Hippocampus (mythology) ,PrPC Proteins ,Maze Learning ,Swimming ,Mice, Knockout ,Analysis of Variance ,Electroshock ,Behavior, Animal ,Wild type ,Mice, Inbred C57BL ,Endocrinology ,medicine.anatomical_structure ,Knockout mouse ,Exploratory Behavior ,Anxiety ,Analysis of variance ,medicine.symptom ,Psychology ,Neuroscience ,Stress, Psychological ,Behavioural despair test - Abstract
Although many studies have investigated the function of cellular prion protein (PrPc), its physiologic role remains elusive. PrPc null mice have been reported to develop normally and to show normal performance in most behavioural tests. In the present study we investigated whether this also holds true after episodes of acute stress. PrPc gene ablated (Prnp0/0) and wild-type mice were subjected to restraint stress, electric foot shock, or swimming and compared with non-stressed animals. Immediately after the stressful situation, the anxiety levels and locomotion of the animals were measured using plus-maze and open-field tests. Among non-stressed animals, there was no significant difference in performance between Prnp0/0 and wild type animals in either test. However, after acute stress provoked by a foot shock or a swimming trial, Prnp0/0 animals showed a significant decrease in anxiety levels when compared with control animals. Moreover, after the swimming test, knockout mice presented decreased locomotion when compared to wild-type mice. Because of this observation, we also assessed both types of mice in a forced swimming test with the objective of better evaluating muscle function and found that Prnp0/0 animals presented reduced forced swimming capacity when compared to controls. As far as we know, this is the first report suggesting that cellular prion protein is involved in modulation of anxiety or muscular activity after acute psychic or physical stress.
- Published
- 2005
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45. Serum S100B in Pregnancy-Related Hypertensive Disorders: A Case–Control Study
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Roger Walz, Janete Vettorazzi-Stuckzynski, André Schmidt, Diogo O. Souza, Adriano B. L. Tort, Olavo B. Amaral, Luis Valmor Cruz Portela, José Geraldo Lopes Ramos, Sérgio Martins-Costa, and Adriana Prato Schmidt
- Subjects
Adult ,Serum ,Hypertensive encephalopathy ,Pathology ,medicine.medical_specialty ,Clinical Biochemistry ,S100 Calcium Binding Protein beta Subunit ,Preeclampsia ,Epilepsy ,Cerebrospinal fluid ,Pregnancy ,Humans ,Medicine ,Eclampsia ,Nerve Growth Factors ,Cerebral perfusion pressure ,Stroke ,Coma ,business.industry ,S100 Proteins ,Biochemistry (medical) ,medicine.disease ,Pregnancy Complications ,Case-Control Studies ,Hypertension ,Female ,medicine.symptom ,business ,Biomarkers - Abstract
Eclampsia is defined as the occurrence of seizures and/or coma resulting from hypertensive encephalopathy on a background of preeclampsia (1). Eclampsia appears to be caused by a failure of the brain’s autoregulatory response to increases in blood pressure, leading to an increase in cerebral perfusion pressure with overperfusion injury similar to that observed in hypertensive encephalopathy (2)(3). Brain edema and hemorrhage ensue, as observed in imaging studies (4)(5), and there is evidence to suggest that these alterations can cause ischemia to brain cells. These events lead to neurologic symptoms (6), including seizures as well as cortical blindness, aphasia, limb weakness, psychosis, coma, and cerebrovascular accidents. Studies have analyzed various diagnostic methods, such as transcranial Doppler measurements, as a way to evaluate neurologic involvement in preeclampsia (3)(7). To date, however, there is no reliable laboratory marker to identify patients at risk for eclampsia or its related complications. S100B is a 21-kDa protein physiologically produced and released primarily by astrocytes in the central nervous system (CNS), where it exerts neurotrophic and gliotrophic actions (8). Because ∼95% of S100B is located in the CNS, the results of several studies have suggested that an increase in S100B in blood and cerebrospinal fluid could be a potential marker of neural injury, indicating reactive gliosis, astrocytic death, and/or blood–brain barrier dysfunction. Accordingly, increased S100B concentrations in cerebrospinal fluid and/or blood have been reported in several pathologic conditions causing acute and chronic brain injury, such as head trauma (9), stroke (10), schizophrenia (11), and human T-lymphotropic virus type 1-associated myelopathy (12). Some studies have also evaluated S100B as a marker of recent seizures. Although S100B has been shown to be increased in both cerebrospinal fluid and brain tissue of patients with temporal lobe epilepsy (13)(14), studies in which …
- Published
- 2004
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46. Memory labilization in reconsolidation and extinction--evidence for a common plasticity system?
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Olavo B. Amaral and Suellen Almeida-Corrêa
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Neuronal Plasticity ,General Neuroscience ,Extinction (psychology) ,Plasticity ,Extinction, Psychological ,Hebbian theory ,Memory ,Physiology (medical) ,Metaplasticity ,Animals ,Humans ,Memory consolidation ,Psychology ,Set (psychology) ,Neuroscience ,Reinforcement, Psychology - Abstract
Reconsolidation and extinction are two processes occurring upon memory retrieval that have received great attention in memory research over the last decade, partly due to their purported potential in the treatment of anxiety disorders. Due to their opposite behavioral effects, the two phenomena have usually been considered as separate entities, with few attempts to build a unified view of how both could be produced by similar mechanisms. Based on computational modeling, we have previously proposed that reconsolidation and extinction are behavioral outcomes of the same set of plasticity systems, albeit working at different synapses. One of these systems seems to be pharmacologically similar to the one involved in initial memory consolidation, and likely involves traditional Hebbian plasticity, while the second seems to be more involved with the labilization of existing memories and/or synaptic changes. In this article, we review the evidence for the existence of a plasticity system specifically involved in memory labilization, as well as its possible molecular requirements, anatomical substrates, synaptic mechanisms and physiological roles. Based on these data, we propose that the field of memory updating might ultimately benefit from a paradigm shift in which reconsolidation and extinction are viewed not as separate processes but as different instantiations of plasticity systems responsible for reinforcement and labilization of synaptic changes.
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- 2014
47. Age-dependent relevance of endogenous 5-lipoxygenase derivatives in anxiety-like behavior in mice
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Claudio Canetti, Luciana M. Leo, Fabrício A. Pamplona, Suellen Almeida-Corrêa, Olavo B. Amaral, and Fernando A. Bozza
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Male ,Indoles ,Mouse ,Psychopharmacology ,lcsh:Medicine ,Endogeny ,Pharmacology ,Anxiety ,chemistry.chemical_compound ,Behavioral Neuroscience ,Mice ,Hippocampus (mythology) ,Psychology ,Lipoxygenase Inhibitors ,lcsh:Science ,chemistry.chemical_classification ,Psychiatry ,Mice, Knockout ,Multidisciplinary ,biology ,Statistics ,Age Factors ,Brain ,Neurochemistry ,Anandamide ,Animal Models ,Endocannabinoid system ,Anxiety Disorders ,Lipoxins ,Mental Health ,Behavioral Pharmacology ,Arachidonate 5-lipoxygenase ,Medicine ,lipids (amino acids, peptides, and proteins) ,Neurochemicals ,Injections, Intraperitoneal ,Research Article ,Elevated plus maze ,Drugs and Devices ,Polyunsaturated Alkamides ,5-Lipoxygenase-Activating Proteins ,Arachidonic Acids ,Biostatistics ,Model Organisms ,Animals ,5-lipoxygenase-activating protein ,Maze Learning ,Biology ,Injections, Intraventricular ,Cannabinoid Receptor Agonists ,Behavior ,Arachidonate 5-Lipoxygenase ,lcsh:R ,Mice, Inbred C57BL ,Enzyme ,chemistry ,Anti-Anxiety Agents ,biology.protein ,lcsh:Q ,Mathematics ,Neuroscience ,Endocannabinoids - Abstract
When 5-lipoxygenase (5-LO) is inhibited, roughly half of the CNS effect of the prototypic endocannabinoid anandamide (AEA) is lost. Therefore, we decided to investigate whether inhibiting this enzyme would influence physiological functions classically described as being under control of the endocannabinoid system. Although 5-LO inhibition by MK-886 reduced lipoxin A4 levels in the brain, no effect was found in the elevated plus maze (EPM), even at the highest possible doses, via i.p. (10 mg/kg,) or i.c.v. (500 pmol/2 µl) routes. Accordingly, no alterations in anxiety-like behavior in the EPM test were observed in 5-LO KO mice. Interestingly, aged mice, which show reduced circulating lipoxin A4 levels, were sensitive to MK-886, displaying an anxiogenic-like state in response to treatment. Moreover, exogenous lipoxin A4 induced an anxiolytic-like profile in the EPM test. Our findings are in line with other reports showing no difference between FLAP KO or 5-LO KO and their control strains in adult mice, but increased anxiety-like behavior in aged mice. We also show for the first time that lipoxin A4 affects mouse behavior. In conclusion, we propose an age-dependent relevancy of endogenous 5-LO derivatives in the modulation of anxiety-like behavior, in addition to a potential for exogenous lipoxin A4 in producing an anxiolytic-like state.
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- 2014
48. USE AND MISUSE OF BENZODIAZEPINES IN BRAZIL: A REVIEW
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João V. Busnello, João Quevedo, Maurício Silva de Lima, Olavo B. Amaral, Marcelo Madruga, and Flávio Kapczinski
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Male ,medicine.medical_specialty ,Time Factors ,Health (social science) ,Substance-Related Disorders ,Medicine (miscellaneous) ,Developing country ,Nonprescription Drugs ,Legislation ,Drug Prescriptions ,Benzodiazepines ,Humans ,Medicine ,Misinformation ,Medical prescription ,Psychiatry ,Developing Countries ,Health policy ,Consumption (economics) ,business.industry ,Public health ,Public Health, Environmental and Occupational Health ,Psychiatry and Mental health ,Anti-Anxiety Agents ,Female ,Drug Monitoring ,business ,Developed country ,Brazil - Abstract
Benzodiazepines are among the most prescribed and consumed medication groups in the world. Although benzodiazepines are used in the treatment of several psychiatric and non-psychiatric disorders, and are generally safe and well-tolerated, the potential for misuse and abuse is considerable. This makes the study and regulation of benzodiazepine prescription and consumption an item of concern in public health around the world. Most developed countries have consistent data of benzodiazepine sales and consumption; however, data from developing countries is scarce, making health policies on the use of benzodiazepines a much tougher issue in these countries. This article aims to review the epidemiology of benzodiazepine use in Brazil, as well as to analyze how legislation, physician misinformation and economic factors might contribute to making benzodiazepine abuse a problem in the country.
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- 2001
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49. [Untitled]
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Ana Maria Oliveira Battastini, Olavo B. Amaral, Roger Walz, Carla Denise Bonan, João José Freitas Sarkis, Isabel Cristina Rockenbach, and Ivan Izquierdo
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Synaptosome ,Kindling ,Chemistry ,medicine.medical_treatment ,General Medicine ,Pharmacology ,Biochemistry ,Adenosine ,Cellular and Molecular Neuroscience ,Anticonvulsant ,ATP hydrolysis ,Nucleotidase ,medicine ,Ectonucleotidase ,Pentylenetetrazol ,medicine.drug - Abstract
The ectonucleotidase pathway is an important metabolic source of extracellular adenosine. Adenosine has potent anticonvulsant effects on various models of epilepsy. One of these models is pentylenetetrazol (PTZ) kindling, in which repeated administration of subconvulsive doses of this drug induces progressive intensification of seizure activity. In this study, we examine the effect of a single convulsive injection (60 mg/kg, i.p.) or 10 successive (35 mg/kg, i.p.) injections of PTZ on synaptosomal ectonucleotidases. Our results have shown that no changes in ectonucleotidase activities were seen at 0, 1, and 24 h or at 5 days after a single convulsive PTZ injection. However, after PTZ-kindling, rats which were more resistant to seizure development presented an increase in ATP hydrolysis in synaptosomes from hippocampus and cerebral cortex (44% and 28%, respectively). These results suggest that changes in nucleotide hydrolysis may represent an important mechanism in the modulation of chronic epileptic activity in this model.
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- 2000
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50. Dysfunction in the coagulation system and schizophrenia
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Rogerio Panizzutti, Silvia Hoirisch-Clapauch, Antonio Egidio Nardi, Marco A. Mezzasalma, and Olavo B. Amaral
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0301 basic medicine ,Hyperhomocysteinemia ,medicine.medical_specialty ,medicine.medical_treatment ,Tissue plasminogen activator ,Protein S ,Pathogenesis ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Hyperinsulinemia ,medicine ,Humans ,Psychiatry ,Biological Psychiatry ,biology ,business.industry ,Blood Coagulation Disorders ,Hypothesis ,medicine.disease ,Psychiatry and Mental health ,030104 developmental biology ,Cytokine ,Schizophrenia ,Immunology ,biology.protein ,Psychopharmacology ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Although different hypotheses have been formulated to explain schizophrenia pathogenesis, the links between them are weak. The observation that five psychotic patients on chronic warfarin therapy for deep-vein thrombosis showed long-term remission of psychotic symptoms made us suspect that abnormalities in the coagulation pathway, specifically low tissue plasminogen activator (tPA) activity, could be one of the missing links. Our hypothesis is supported by a high prevalence of conditions affecting tPA activity in drug-naive schizophrenia, such as antiphospholipid antibodies, elevated cytokine levels, hyperinsulinemia and hyperhomocysteinemia. We recently screened a group of schizophrenia patients and controls for conditions affecting tPA activity. Free-protein S deficiency was highly prevalent among patients, but not found in controls. Free-protein S and functional protein C are natural anticoagulants that form complexes that inhibit tPA inhibitors. All participants had normal protein C levels, suggesting that protein S could have a role in schizophrenia, independent of protein C. Chronic patients and those studied during acute episodes had between three and six conditions affecting tPA and/or protein S activity, while patients in remission had up to two, which led us to postulate that multiple conditions affecting tPA and/or protein S activity could contribute to the full expression of schizophrenia phenotype. This paper describes the physiological roles of tPA and protein S, reviewing how their activity influences pathogenesis and comorbidity of schizophrenia. Next, it analyzes how activity of tPA and protein S is influenced by biochemical abnormalities found in schizophrenia. Last, it suggests future directions for research, such as studies on animal models and on therapeutic approaches for schizophrenia aiming at increasing tPA and protein S activity.
- Published
- 2016
- Full Text
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