109 results on '"Olabi B"'
Search Results
2. What’s new in atopic eczema? An analysis of systematic reviews published in 2019. Part 2: treatment
- Author
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Marrouche, N., primary, Lancaster, N., additional, Grindlay, D. J. C., additional, Rogers, N. K., additional, and Olabi, B., additional
- Published
- 2021
- Full Text
- View/download PDF
3. What’s new in atopic eczema? An analysis of systematic reviews published in 2019. Part 1: Risk factors and prevention
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Earp, E., primary, Tsianou, Z., additional, Grindlay, D. J. C., additional, Rogers, N. K., additional, and Olabi, B., additional
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- 2021
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4. Single-cell multi-omics analysis of the immune response in COVID-19
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Stephenson, E, Reynolds, G, Botting, RA, Calero-Nieto, FJ, Morgan, MD, Tuong, ZK, Bach, K, Sungnak, W, Worlock, KB, Yoshida, M, Kumasaka, N, Kania, K, Engelbert, J, Olabi, B, Spegarova, JS, Wilson, NK, Mende, N, Jardine, L, Gardner, LCS, Goh, I, Horsfall, D, McGrath, J, Webb, S, Mather, MW, Lindeboom, RGH, Dann, E, Huang, N, Polanski, K, Prigmore, E, Gothe, F, Scott, J, Payne, RP, Baker, KF, Hanrath, AT, van der Loeff, ICDS, Barr, AS, Sanchez-Gonzalez, A, Bergamaschi, L, Mescia, F, Barnes, JL, Kilich, E, de Wilton, A, Saigal, A, Saleh, A, Janes, SM, Smith, CM, Gopee, N, Wilson, C, Coupland, P, Coxhead, JM, Kiselev, VY, van Dongen, S, Bacardit, J, King, HW, Rostron, AJ, Simpson, AJ, Hambleton, S, Laurenti, E, Lyons, PA, Meyer, KB, Nikolic, MZ, Duncan, CJA, Smith, KGC, Teichmann, SA, Clatworthy, MR, Marioni, JC, Gottgens, B, Haniffa, M, Stephenson, E, Reynolds, G, Botting, RA, Calero-Nieto, FJ, Morgan, MD, Tuong, ZK, Bach, K, Sungnak, W, Worlock, KB, Yoshida, M, Kumasaka, N, Kania, K, Engelbert, J, Olabi, B, Spegarova, JS, Wilson, NK, Mende, N, Jardine, L, Gardner, LCS, Goh, I, Horsfall, D, McGrath, J, Webb, S, Mather, MW, Lindeboom, RGH, Dann, E, Huang, N, Polanski, K, Prigmore, E, Gothe, F, Scott, J, Payne, RP, Baker, KF, Hanrath, AT, van der Loeff, ICDS, Barr, AS, Sanchez-Gonzalez, A, Bergamaschi, L, Mescia, F, Barnes, JL, Kilich, E, de Wilton, A, Saigal, A, Saleh, A, Janes, SM, Smith, CM, Gopee, N, Wilson, C, Coupland, P, Coxhead, JM, Kiselev, VY, van Dongen, S, Bacardit, J, King, HW, Rostron, AJ, Simpson, AJ, Hambleton, S, Laurenti, E, Lyons, PA, Meyer, KB, Nikolic, MZ, Duncan, CJA, Smith, KGC, Teichmann, SA, Clatworthy, MR, Marioni, JC, Gottgens, B, and Haniffa, M
- Abstract
Analysis of human blood immune cells provides insights into the coordinated response to viral infections such as severe acute respiratory syndrome coronavirus 2, which causes coronavirus disease 2019 (COVID-19). We performed single-cell transcriptome, surface proteome and T and B lymphocyte antigen receptor analyses of over 780,000 peripheral blood mononuclear cells from a cross-sectional cohort of 130 patients with varying severities of COVID-19. We identified expansion of nonclassical monocytes expressing complement transcripts (CD16+C1QA/B/C+) that sequester platelets and were predicted to replenish the alveolar macrophage pool in COVID-19. Early, uncommitted CD34+ hematopoietic stem/progenitor cells were primed toward megakaryopoiesis, accompanied by expanded megakaryocyte-committed progenitors and increased platelet activation. Clonally expanded CD8+ T cells and an increased ratio of CD8+ effector T cells to effector memory T cells characterized severe disease, while circulating follicular helper T cells accompanied mild disease. We observed a relative loss of IgA2 in symptomatic disease despite an overall expansion of plasmablasts and plasma cells. Our study highlights the coordinated immune response that contributes to COVID-19 pathogenesis and reveals discrete cellular components that can be targeted for therapy.
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- 2021
5. Blood and immune development in human fetal bone marrow and Down syndrome
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Jardine, L, Webb, S, Goh, I, Londono, MQ, Reynolds, G, Mather, M, Olabi, B, Stephenson, E, Botting, RA, Horsfall, D, Engelbert, J, Maunder, D, Mende, N, Murnane, C, Dann, E, McGrath, J, King, H, Kucinski, I, Queen, R, Carey, CD, Shrubsole, C, Poyner, E, Acres, M, Jones, C, Ness, T, Coulthard, R, Elliott, N, O'Byrne, S, Haltalli, MLR, Lawrence, JE, Lisgo, S, Balogh, P, Meyer, KB, Prigmore, E, Ambridge, K, Jain, MS, Efremova, M, Pickard, K, Creasey, T, Bacardit, J, Henderson, D, Coxhead, J, Filby, A, Hussain, R, Dixon, D, McDonald, D, Popescu, D-M, Kowalczyk, MS, Li, B, Ashenberg, O, Tabaka, M, Dionne, D, Tickle, TL, Slyper, M, Rozenblatt-Rosen, O, Regev, A, Behjati, S, Laurenti, E, Wilson, NK, Roy, A, Goettgens, B, Roberts, I, Teichmann, SA, Haniffa, M, Jardine, L, Webb, S, Goh, I, Londono, MQ, Reynolds, G, Mather, M, Olabi, B, Stephenson, E, Botting, RA, Horsfall, D, Engelbert, J, Maunder, D, Mende, N, Murnane, C, Dann, E, McGrath, J, King, H, Kucinski, I, Queen, R, Carey, CD, Shrubsole, C, Poyner, E, Acres, M, Jones, C, Ness, T, Coulthard, R, Elliott, N, O'Byrne, S, Haltalli, MLR, Lawrence, JE, Lisgo, S, Balogh, P, Meyer, KB, Prigmore, E, Ambridge, K, Jain, MS, Efremova, M, Pickard, K, Creasey, T, Bacardit, J, Henderson, D, Coxhead, J, Filby, A, Hussain, R, Dixon, D, McDonald, D, Popescu, D-M, Kowalczyk, MS, Li, B, Ashenberg, O, Tabaka, M, Dionne, D, Tickle, TL, Slyper, M, Rozenblatt-Rosen, O, Regev, A, Behjati, S, Laurenti, E, Wilson, NK, Roy, A, Goettgens, B, Roberts, I, Teichmann, SA, and Haniffa, M
- Abstract
Haematopoiesis in the bone marrow (BM) maintains blood and immune cell production throughout postnatal life. Haematopoiesis first emerges in human BM at 11-12 weeks after conception1,2, yet almost nothing is known about how fetal BM (FBM) evolves to meet the highly specialized needs of the fetus and newborn. Here we detail the development of FBM, including stroma, using multi-omic assessment of mRNA and multiplexed protein epitope expression. We find that the full blood and immune cell repertoire is established in FBM in a short time window of 6-7 weeks early in the second trimester. FBM promotes rapid and extensive diversification of myeloid cells, with granulocytes, eosinophils and dendritic cell subsets emerging for the first time. The substantial expansion of B lymphocytes in FBM contrasts with fetal liver at the same gestational age. Haematopoietic progenitors from fetal liver, FBM and cord blood exhibit transcriptional and functional differences that contribute to tissue-specific identity and cellular diversification. Endothelial cell types form distinct vascular structures that we show are regionally compartmentalized within FBM. Finally, we reveal selective disruption of B lymphocyte, erythroid and myeloid development owing to a cell-intrinsic differentiation bias as well as extrinsic regulation through an altered microenvironment in Down syndrome (trisomy 21).
- Published
- 2021
6. NICE guidance and current practise of recurrent and bilateral groin hernia repair by Scottish surgeons
- Author
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Shaikh, I., Olabi, B., Wong, V. M. Y., Nixon, S. J., and Kumar, S.
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- 2011
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7. COVID-19 deaths in children: comparison with all- and other causes and trends in incidence of mortality
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Bhopal, S.S., Bagaria, J., Olabi, B., and Bhopal, R.
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- 2020
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8. Multicentric reticulohistiocytosis: an association with chronic sagittal sinus thrombosis
- Author
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Olabi, B., primary, Abbas, A., additional, Shah, J., additional, Tidman, M. J., additional, Ayob, S., additional, and Abhishek, A., additional
- Published
- 2020
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9. Dermatological games: Part 2. What has changed 40 years on?
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Brown, A., primary, Olabi, B., additional, Tsianou, Z., additional, Tasker, F., additional, Lancaster, N., additional, Tan, J., additional, and Williams, H. C., additional
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- 2020
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10. Dermatological games: Part 1. Original description and critique
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Brown, A., primary, Olabi, B., additional, Tsianou, Z., additional, Tasker, F., additional, Lancaster, N., additional, Tan, J., additional, and Williams, H. C., additional
- Published
- 2020
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11. Interdigital lesions: it’s a dog’s life
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Olabi, B., primary, Biswas, A., additional, and Tidman, M. J., additional
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- 2020
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12. What’s new in atopic eczema? An analysis of systematic reviews published in 2018. Part 2: systemic therapies
- Author
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Olabi, B., primary, Worboys, S., additional, Garland, T., additional, Grindlay, D. J. C., additional, Rogers, N. K., additional, and Harman, K. E., additional
- Published
- 2020
- Full Text
- View/download PDF
13. ‘Efficacy and safety of imiquimod 5% cream for basal cell carcinoma: a meta‐analysis of randomized controlled trial’: a critical appraisal
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Olabi, B., primary, Tasker, F., additional, and Williams, H.C., additional
- Published
- 2020
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14. Open reduction and endobutton fixation of displaced fractures of the lateral end of the clavicle in younger patients
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Robinson, C. M., Akhtar, M. A., Jenkins, P. J., Sharpe, T., Ray, A., and Olabi, B.
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- 2010
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15. Proximal humeral fractures with a severe varus deformity treated by fixation with a locking plate
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Robinson, C. M., Wylie, J. R., Ray, A. G., Dempster, N. J., Olabi, B., Seah, K. T. M., and Akhtar, M. A.
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- 2010
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16. Effect of miscarriage on subsequent pregnancies
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Olabi, B
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- 2009
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17. 482 Immune cells moonlight as regulators of skin morphogenesis: findings from a multi-omic prenatal skin atlas
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Gopee, N.H., Winheim, E., Admane, C., Foster, A., Torabi, F., Olabi, B., Stephenson, E., Mazin, P., Gambardella, L., and Haniffa, M.
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- 2024
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18. Skin disease profile of Syrian refugees in Jordan: a field‐mission assessment
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Saikal, S.L., primary, Ge, L., additional, Mir, A., additional, Pace, J., additional, Abdulla, H., additional, Leong, K.F., additional, Benelkahla, M., additional, Olabi, B., additional, Medialdea‐Carrera, R., additional, and Padovese, V., additional
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- 2019
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19. Response to ‘Long‐term outcomes of imiquimod‐treated lentigo maligna’
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Veitch, D., primary, Smith, H., additional, Olabi, B., additional, Lam, M., additional, Patel, A., additional, and Varma, S., additional
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- 2019
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20. Ten years’ experience using the Johnson square procedure for lentigo maligna
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Smith, H., primary, Olabi, B., additional, Lam, M., additional, Patel, A., additional, and Varma, S., additional
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- 2019
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21. Dermatological games: Part 1. Original description and critique.
- Author
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Brown, A., Olabi, B., Tsianou, Z., Tasker, F., Lancaster, N., Tan, J., and Williams, H. C.
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DERMATOLOGISTS , *PATIENT education , *GAMES , *GAME theory , *PATIENT care - Abstract
Summary: 'Dermatological games' by J. A. Cotterill was a seminal article published in 1981, which attempted to explain the interaction between dermatologists and patients using Berne's game theory. In Part 1 of this series of two reviews, we review Cotterill's original list of games and how they applied to dermatology in the context of when they were written. We then critically appraise Cotterill's article and arguments. Although the article was deliberately provocative, we found Cotterill's arguments to be well‐structured and logical, and the 'games' described are well‐conceived. Cotterill's candid analysis of doctors' motivations and the potential impact on the patient is refreshing and insightful. It is striking that, 40 years on, many of the original 'games' described remain recognizable in current practice. In Part 2, a list of new 'games' that might be observed in modern dermatological practice is introduced. The relevance of Cotterill's paper and an explanation for why his educational article remains relevant to dermatology practice and training today is scrutinized in order to stimulate discussion, promote education and improve patient care. Click here for the corresponding questions to this CME article. [ABSTRACT FROM AUTHOR]
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- 2021
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22. Dermatological games: Part 2. What has changed 40 years on?
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Brown, A., Olabi, B., Tsianou, Z., Tasker, F., Lancaster, N., Tan, J., and Williams, H. C.
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GAMES , *GAME theory , *DERMATOLOGISTS , *PATIENT care - Abstract
Summary: In this two‐part report, we review and critically appraise 'Dermatological games' by J. A. Cotterill, a seminal article published in 1981, which attempted to explain the interaction between dermatologists and patients using Berne's game theory. Part 1 described and critically appraised the educational value of Cotterill's original list of games in relation to how they apply to dermatology practice. In Part 2, a list of new 'games' that might be observed in current dermatological practice is introduced. The relevance of Cotterill's paper and an explanation for why his article remains relevant to dermatology practice and training today is scrutinized, in order to stimulate discussion and improve patient care. [ABSTRACT FROM AUTHOR]
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- 2021
- Full Text
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23. Skin disease profile of Syrian refugees in Jordan: a field‐mission assessment.
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Saikal, S.L., Ge, L., Mir, A., Pace, J., Abdulla, H., Leong, K.F., Benelkahla, M., Olabi, B., Medialdea‐Carrera, R., and Padovese, V.
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SYRIAN refugees ,SKIN diseases ,REFUGEE camps ,DEMOGRAPHIC characteristics ,SKIN disease diagnosis - Abstract
Background: Since the beginning of the Syrian war in 2011, the world has faced the most severe refugee crisis in history and 5.6 million Syrians have sought asylum in neighbouring countries or in Europe. According to recent estimates, more than 650 000 Syrian refugees are displaced in Jordan. Objectives: This article aims to assess the demographic characteristics and skin disease profile of Syrian displaced people residing in Al Za'atari camp and in communities in Jordan. Furthermore, the authors discuss the barriers to healthcare provision experienced during field missions. Methods: This is a retrospective analysis of medical records collected during three medical missions in Jordan by an international dermatological team. Data on patient age, gender, country of origin and skin disease diagnoses were recorded both in Al Za'atari camp and Jordanian towns near the Syrian border. Results: A total of 1197 patients were assessed during the field missions, with 67.7% female and 37.1% under the age of 14 years. Dermatitis was the leading dermatological condition in both refugee camp and community healthcare clinics. Infectious diseases were the second most common; however, fungal presentations were more common in the community as opposed to viral in Al Za'atari. Conclusions: High dermatitis presentations were likely secondary to the environment, living conditions and lack of access to emollients. Infectious diseases were postulated secondary to poor hygiene and sharing of overcrowded spaces. Barriers to health care included limited pharmacological formulary, difficulty in continuity of care and case referrals due to lack of specialized services. Better access to health care, improvement of living conditions and hygiene, and increased availability of medications including emollients and sunscreens are all interventions that should be carried out to reduce skin disease burden. Our findings should further urge the international community to uphold their commitments and uptake engagement in improving health care for Syrian displaced people. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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24. Multicentric reticulohistiocytosis: an association with chronic sagittal sinus thrombosis.
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Olabi, B., Abbas, A., Shah, J., Tidman, M. J., Ayob, S., and Abhishek, A.
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SINUS thrombosis , *RETINAL vein , *DIAGNOSIS , *SYMPTOMS , *CRANIAL sinuses - Abstract
MRI imaging of his brain revealed chronic sagittal sinus thrombosis (Fig. Magnetic resonance imaging (MRI) of the legs demonstrated synovitis involving the hips and knees. It predominantly affects the skin and joints, with erosive arthritis present in up to 70% of cases.1 There are only around 300 cases reported to date in the literature, and the male/female ratio is approximately 3: 1.1 We report a case of MRH complicated by chronic sagittal sinus thrombosis. [Extracted from the article]
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- 2021
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25. Expression of osteopontin coregulators in primary colorectal cancer and associated liver metastases
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Mole, D J, primary, O'Neill, C, additional, Hamilton, P, additional, Olabi, B, additional, Robinson, V, additional, Williams, L, additional, Diamond, T, additional, El-Tanani, M, additional, and Campbell, F C, additional
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- 2011
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26. Diagnosis of diabetes using the oral glucose tolerance test
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Olabi, B., primary and Bhopal, R., additional
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- 2009
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27. Response to 'Long‐term outcomes of imiquimod‐treated lentigo maligna'.
- Author
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Veitch, D., Smith, H., Olabi, B., Lam, M., Patel, A., and Varma, S.
- Subjects
LENTIGO ,SKIN cancer ,SURGICAL excision ,MELANOMA treatment ,TREATMENT effectiveness - Abstract
Of the 44 lesions, 22 were referred as primary lesions and the remaining 22 were either incomplete excisions or recurrences following previous standard excision. Usefulness of the staged excision for lentigo maligna and lentigo maligna melanoma: the "square" procedure. Nine per cent of biopsy-proven lentigo maligna lesions are reclassified as lentigo maligna melanoma after surgery. [Extracted from the article]
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- 2020
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28. Do we have any solid evidence of clinical utility about the pathophysiology of schizophrenia?,Czy mamy jakieś solidne, przydatneklinicznie dowody naukowe dotyczaçe patofizjologii schizofrenii?
- Author
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Lawrie, S. M., Olabi, B., Hall, J., and Andrew McIntosh
29. Structural brain changes in first episode Schizophrenia compared with Fronto-Temporal Lobar Degeneration: a meta-analysis
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Olabi Bayanne, Ellison-Wright Ian, Bullmore Ed, and Lawrie Stephen M
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Schizophrenia/pathology ,FTLD/pathology ,Meta-analysis ,Magnetic resonance imaging/methods ,Humans ,Brain/pathology ,Brain mapping ,Imaging processing ,Computer-Assisted/methods ,Psychiatry ,RC435-571 - Abstract
Abstract Background The authors sought to compare gray matter changes in First Episode Schizophrenia (FES) compared with Fronto-Temporal Lobar Degeneration (FTLD) using meta-analytic methods applied to neuro-imaging studies. Methods A systematic search was conducted for published, structural voxel-based morphometric MRI studies in patients with FES or FTLD. Data were combined using anatomical likelihood estimation (ALE) to determine the extent of gray matter decreases and analysed to ascertain the degree of overlap in the spatial distribution of brain changes in both diseases. Results Data were extracted from 18 FES studies (including a total of 555 patients and 621 comparison subjects) and 20 studies of FTLD or related disorders (including a total of 311 patients and 431 comparison subjects). The similarity in spatial overlap of brain changes in the two disorders was significant (p = 0.001). Gray matter deficits common to both disorders included bilateral caudate, left insula and bilateral uncus regions. Conclusions There is a significant overlap in the distribution of structural brain changes in First Episode Schizophrenia and Fronto-Temporal Lobar Degeneration. This may reflect overlapping aetiologies, or a common vulnerability of these regions to the distinct aetio-pathological processes in the two disorders.
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- 2012
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30. Cutaneous T cell lymphoma atlas reveals malignant T H 2 cells supported by a B cell-rich tumor microenvironment.
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Li R, Strobl J, Poyner EFM, Balbaa A, Torabi F, Mazin PV, Chipampe NJ, Stephenson E, Ramírez-Suástegi C, Shanmugiah VBM, Gardner L, Olabi B, Coulthard R, Botting RA, Zila N, Prigmore E, Gopee NH, Chroscik MA, Kritikaki E, Engelbert J, Goh I, Chan HM, Johnson HF, Ellis J, Rowe V, Tun W, Reynolds G, Yang D, Foster AR, Gambardella L, Winheim E, Admane C, Rumney B, Steele L, Jardine L, Nenonen J, Pickard K, Lumley J, Hampton P, Hu S, Liu F, Liu X, Horsfall D, Basurto-Lozada D, Grimble L, Bacon CM, Weatherhead SC, Brauner H, Wang Y, Bai F, Reynolds NJ, Allen JE, Jonak C, Brunner PM, Teichmann SA, and Haniffa M
- Abstract
Cutaneous T cell lymphoma (CTCL) is a potentially fatal clonal malignancy of T cells primarily affecting the skin. The most common form of CTCL, mycosis fungoides, can be difficult to diagnose, resulting in treatment delay. We performed single-cell and spatial transcriptomics analysis of skin from patients with mycosis fungoides-type CTCL and an integrated comparative analysis with human skin cell atlas datasets from healthy and inflamed skin. We revealed the co-optation of T helper 2 (T
H 2) cell-immune gene programs by malignant CTCL cells and modeling of the tumor microenvironment to support their survival. We identified MHC-II+ fibroblasts and dendritic cells that can maintain TH 2 cell-like tumor cells. CTCL tumor cells are spatially associated with B cells, forming tertiary lymphoid structure-like aggregates. Finally, we validated the enrichment of B cells in CTCL and its association with disease progression across three independent patient cohorts. Our findings provide diagnostic aids, potential biomarkers for disease staging and therapeutic strategies for CTCL., Competing Interests: Competing interests In the past 3 years, S.A.T. has received remuneration for scientific advisory board membership from Sanofi, GlaxoSmithKline, Foresite Labs and Qiagen. She is a co-founder of and holds equity in Transition Bio and Ensocell. From 8 January 2024, she has been a part-time employee of GlaxoSmithKline. The remaining authors declare no competing interests., (© 2024. The Author(s).)- Published
- 2024
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31. A prenatal skin atlas reveals immune regulation of human skin morphogenesis.
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Gopee NH, Winheim E, Olabi B, Admane C, Foster AR, Huang N, Botting RA, Torabi F, Sumanaweera D, Le AP, Kim J, Verger L, Stephenson E, Adão D, Ganier C, Gim KY, Serdy SA, Deakin C, Goh I, Steele L, Annusver K, Miah MU, Tun WM, Moghimi P, Kwakwa KA, Li T, Basurto Lozada D, Rumney B, Tudor CL, Roberts K, Chipampe NJ, Sidhpura K, Englebert J, Jardine L, Reynolds G, Rose A, Rowe V, Pritchard S, Mulas I, Fletcher J, Popescu DM, Poyner E, Dubois A, Guy A, Filby A, Lisgo S, Barker RA, Glass IA, Park JE, Vento-Tormo R, Nikolova MT, He P, Lawrence JEG, Moore J, Ballereau S, Hale CB, Shanmugiah V, Horsfall D, Rajan N, McGrath JA, O'Toole EA, Treutlein B, Bayraktar O, Kasper M, Progatzky F, Mazin P, Lee J, Gambardella L, Koehler KR, Teichmann SA, and Haniffa M
- Subjects
- Humans, Endothelial Cells cytology, Endothelial Cells metabolism, Female, Neovascularization, Physiologic immunology, Transcriptome, Human Embryonic Stem Cells cytology, Human Embryonic Stem Cells metabolism, Wound Healing genetics, Fetus cytology, Fetus immunology, Skin immunology, Skin cytology, Morphogenesis, Macrophages immunology, Macrophages cytology, Macrophages metabolism, Hair Follicle cytology, Hair Follicle embryology, Hair Follicle metabolism, Organoids cytology, Organoids metabolism, Induced Pluripotent Stem Cells cytology, Induced Pluripotent Stem Cells metabolism, Immunity, Innate, Atlases as Topic, Single-Cell Analysis
- Abstract
Human prenatal skin is populated by innate immune cells, including macrophages, but whether they act solely in immunity or have additional functions in morphogenesis is unclear. Here we assembled a comprehensive multi-omics reference atlas of prenatal human skin (7-17 post-conception weeks), combining single-cell and spatial transcriptomics data, to characterize the microanatomical tissue niches of the skin. This atlas revealed that crosstalk between non-immune and immune cells underpins the formation of hair follicles, is implicated in scarless wound healing and is crucial for skin angiogenesis. We systematically compared a hair-bearing skin organoid (SkO) model derived from human embryonic stem cells and induced pluripotent stem cells to prenatal and adult skin
1 . The SkO model closely recapitulated in vivo skin epidermal and dermal cell types during hair follicle development and expression of genes implicated in the pathogenesis of genetic hair and skin disorders. However, the SkO model lacked immune cells and had markedly reduced endothelial cell heterogeneity and quantity. Our in vivo prenatal skin cell atlas indicated that macrophages and macrophage-derived growth factors have a role in driving endothelial development. Indeed, vascular network remodelling was enhanced following transfer of autologous macrophages derived from induced pluripotent stem cells into SkO cultures. Innate immune cells are therefore key players in skin morphogenesis beyond their conventional role in immunity, a function they achieve through crosstalk with non-immune cells., Competing Interests: Competing interests: J.L. and K.R.K., with the Indiana University Research and Technology Corporation, have a patent relating to the methodology and composition of SkOs (PCT/US2016/058174). K.R.K. is a consultant for StemCell Technologies. All other authors declare no competing interests., (© 2024. The Author(s).)- Published
- 2024
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32. Midfacial toddler excoriation syndrome (MiTES): case series, diagnostic criteria and evidence for a pathogenic mechanism.
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Sarveswaran N, Pamela Y, Reddy AAN, Mustari AP, Parthasarathi A, Mancini AJ, Bishnoi A, Inamadar AC, Olabi B, Browne F, Deshmukh GN, McWilliam K, Vinay K, Srinivas S, Ibbs S, Natarajan S, Rao VR, Zawar V, Gowda VK, Shaikh SS, Moss C, Woods CG, and Drissi I
- Subjects
- Humans, Male, Female, Child, Preschool, Infant, Genotype, Child, Syndrome, Nerve Tissue Proteins genetics, Hereditary Sensory and Autonomic Neuropathies genetics, Hereditary Sensory and Autonomic Neuropathies diagnosis, Carrier Proteins, Phenotype
- Abstract
Background: PRDM12 polyalanine tract expansions cause two different disorders: midfacial toddler excoriation syndrome (MiTES; itch with normal pain sensation associated with 18 homozygous alanines (18A); and congenital insensitivity to pain (CIP) with normal itch associated with 19 homozygous alanines (19A). Knowledge of the phenotype, genotype and disease mechanism of MiTES is incomplete. Why 18A vs. 19A PRDM12 can cause almost opposite phenotypes is unknown; no other polyalanine or polyglutamine tract expansion disease causes two such disparate phenotypes., Objectives: To assess the genotype and phenotype of nine new, nine atypical and six previously reported patients diagnosed with MiTES., Methods: Using cell lines with homozygous PR domain zinc finger protein 12 (PRDM12) containing 12 alanines (12A; normal), 18A (MiTES) and 19A (CIP), we examined PRDM12 aggregation and subcellular localization by image-separation confocal microscopy and subcellular fractionation Western blotting., Results: MiTES presents in the first year of life; in all cases the condition regresses over the first decade, leaving scarring. The MiTES phenotype is highly distinctive. Features overlapping with PRDM12 CIP are rarely found. The genotype-phenotype study of the PRDM12 polyalanine tract shows that having 7-15 alanines is normal; 16-18 alanines is associated with MiTES; 19 alanines leads to CIP; and no clinically atypical cases of MiTES had a polyalanine tract expansion. PRDM12 aggregation and subcellular localization differed significantly between 18A and normal 12A cell lines and between 18A and 19A cell lines. MiTES is a new protein-aggregation disease., Conclusions: We provide diagnostic criteria for MiTES and improved longitudinal data. MiTES and CIP are distinct phenotypes, despite their genotypes varying by a single alanine in the PRDM12 polyalanine tract. We found clear distinctions between the cellular phenotypes of normal, MiTES and CIP cells. We hypothesize that the developmental environment of the trigeminal ganglion is unique and critically sensitive to pre- and postnatal levels of PRDM12., Competing Interests: Conflicts of interest The authors declare no conflicts of interest., (© The Author(s) 2024. Published by Oxford University Press on behalf of British Association of Dermatologists.)
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- 2024
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33. Yolk sac cell atlas reveals multiorgan functions during human early development.
- Author
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Goh I, Botting RA, Rose A, Webb S, Engelbert J, Gitton Y, Stephenson E, Quiroga Londoño M, Mather M, Mende N, Imaz-Rosshandler I, Yang L, Horsfall D, Basurto-Lozada D, Chipampe NJ, Rook V, Lee JTH, Ton ML, Keitley D, Mazin P, Vijayabaskar MS, Hannah R, Gambardella L, Green K, Ballereau S, Inoue M, Tuck E, Lorenzi V, Kwakwa K, Alsinet C, Olabi B, Miah M, Admane C, Popescu DM, Acres M, Dixon D, Ness T, Coulthard R, Lisgo S, Henderson DJ, Dann E, Suo C, Kinston SJ, Park JE, Polanski K, Marioni J, van Dongen S, Meyer KB, de Bruijn M, Palis J, Behjati S, Laurenti E, Wilson NK, Vento-Tormo R, Chédotal A, Bayraktar O, Roberts I, Jardine L, Göttgens B, Teichmann SA, and Haniffa M
- Subjects
- Female, Humans, Pregnancy, Blood Coagulation genetics, Macrophages, Atlases as Topic, Gene Expression, Gene Expression Profiling, Hematopoiesis genetics, Liver embryology, Yolk Sac cytology, Yolk Sac metabolism, Embryonic Development genetics
- Abstract
The extraembryonic yolk sac (YS) ensures delivery of nutritional support and oxygen to the developing embryo but remains ill-defined in humans. We therefore assembled a comprehensive multiomic reference of the human YS from 3 to 8 postconception weeks by integrating single-cell protein and gene expression data. Beyond its recognized role as a site of hematopoiesis, we highlight roles in metabolism, coagulation, vascular development, and hematopoietic regulation. We reconstructed the emergence and decline of YS hematopoietic stem and progenitor cells from hemogenic endothelium and revealed a YS-specific accelerated route to macrophage production that seeds developing organs. The multiorgan functions of the YS are superseded as intraembryonic organs develop, effecting a multifaceted relay of vital functions as pregnancy proceeds.
- Published
- 2023
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34. Reliable Detection of Eczema Areas for Fully Automated Assessment of Eczema Severity from Digital Camera Images.
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Attar R, Hurault G, Wang Z, Mokhtari R, Pan K, Olabi B, Earp E, Steele L, Williams HC, and Tanaka RJ
- Abstract
Assessing the severity of eczema in clinical research requires face-to-face skin examination by trained staff. Such approaches are resource-intensive for participants and staff, challenging during pandemics, and prone to inter- and intra-observer variation. Computer vision algorithms have been proposed to automate the assessment of eczema severity using digital camera images. However, they often require human intervention to detect eczema lesions and cannot automatically assess eczema severity from real-world images in an end-to-end pipeline. We developed a model to detect eczema lesions from images using data augmentation and pixel-level segmentation of eczema lesions on 1,345 images provided by dermatologists. We evaluated the quality of the obtained segmentation compared with that of the clinicians, the robustness to varying imaging conditions encountered in real-life images, such as lighting, focus, and blur, and the performance of downstream severity prediction when using the detected eczema lesions. The quality and robustness of eczema lesion detection increased by approximately 25% and 40%, respectively, compared with that of our previous eczema detection model. The performance of the downstream severity prediction remained unchanged. Use of skin segmentation as an alternative to eczema segmentation that requires specialist labeling showed the performance on par with when eczema segmentation is used., (© 2023 The Authors.)
- Published
- 2023
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35. Determining the clinical applicability of machine learning models through assessment of reporting across skin phototypes and rarer skin cancer types: A systematic review.
- Author
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Steele L, Tan XL, Olabi B, Gao JM, Tanaka RJ, and Williams HC
- Subjects
- Humans, Skin pathology, Skin Neoplasms pathology, Carcinoma, Basal Cell pathology, Melanoma diagnosis, Melanoma pathology, Carcinoma, Squamous Cell pathology
- Abstract
Machine learning (ML) models for skin cancer recognition may have variable performance across different skin phototypes and skin cancer types. Overall performance metrics alone are insufficient to detect poor subgroup performance. We aimed (1) to assess whether studies of ML models reported results separately for different skin phototypes and rarer skin cancers, and (2) to graphically represent the skin cancer training datasets used by current ML models. In this systematic review, we searched PubMed, Embase and CENTRAL. We included all studies in medical journals assessing an ML technique for skin cancer diagnosis that used clinical or dermoscopic images from 1 January 2012 to 22 September 2021. No language restrictions were applied. We considered rarer skin cancers to be skin cancers other than pigmented melanoma, basal cell carcinoma and squamous cell carcinoma. We identified 114 studies for inclusion. Rarer skin cancers were included by 8/114 studies (7.0%), and results for a rarer skin cancer were reported separately in 1/114 studies (0.9%). Performance was reported across all skin phototypes in 1/114 studies (0.9%), but performance was uncertain in skin phototypes I and VI from minimal representation of the skin phototypes in the test dataset (9/3756 and 1/3756, respectively). For training datasets, although public datasets were most frequently used, with the most widely used being the International Skin Imaging Collaboration (ISIC) archive (65/114 studies, 57.0%), the largest datasets were private. Our review identified that most ML models did not report performance separately for rarer skin cancers and different skin phototypes. A degree of variability in ML model performance across subgroups is expected, but the current lack of transparency is not justifiable and risks models being used inappropriately in populations in whom accuracy is low., (© 2022 The Authors. Journal of the European Academy of Dermatology and Venereology published by John Wiley & Sons Ltd on behalf of European Academy of Dermatology and Venereology.)
- Published
- 2023
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36. Detecting Eczema Areas in Digital Images: An Impossible Task?
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Hurault G, Pan K, Mokhtari R, Olabi B, Earp E, Steele L, Williams HC, and Tanaka RJ
- Abstract
Assessing the severity of atopic dermatitis (AD, or eczema) traditionally relies on a face-to-face assessment by healthcare professionals and may suffer from inter- and intra-rater variability. With the expanding role of telemedicine, several machine learning algorithms have been proposed to automatically assess AD severity from digital images. Those algorithms usually detect and then delineate (segment) AD lesions before assessing lesional severity and are trained using the data of AD areas detected by healthcare professionals. To evaluate the reliability of such data, we estimated the inter-rater reliability of AD segmentation in digital images. Four dermatologists independently segmented AD lesions in 80 digital images collected in a published clinical trial. We estimated the inter-rater reliability of the AD segmentation using the intraclass correlation coefficient at the pixel and the area levels for different resolutions of the images. The average intraclass correlation coefficient was 0.45 ( standard error = 0.04 ) corresponding to a poor agreement between raters, whereas the degree of agreement for AD segmentation varied from image to image. The AD segmentation in digital images is highly rater dependent even among dermatologists. Such limitations need to be taken into consideration when AD segmentation data are used to train machine learning algorithms that assess eczema severity., (© 2022 The Authors.)
- Published
- 2022
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37. Systemic interventions for treatment of Stevens-Johnson syndrome (SJS), toxic epidermal necrolysis (TEN), and SJS/TEN overlap syndrome.
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Jacobsen A, Olabi B, Langley A, Beecker J, Mutter E, Shelley A, Worley B, Ramsay T, Saavedra A, Parker R, Stewart F, and Pardo Pardo J
- Subjects
- Acetylcysteine, Adrenal Cortex Hormones therapeutic use, Adult, Child, Cyclosporine therapeutic use, Etanercept, Female, Humans, Immunoglobulins, Intravenous therapeutic use, Male, Middle Aged, Observational Studies as Topic, Thalidomide, Tumor Necrosis Factor-alpha, Autoimmune Diseases drug therapy, Stevens-Johnson Syndrome drug therapy
- Abstract
Background: Stevens-Johnson syndrome (SJS), toxic epidermal necrolysis (TEN), and SJS/TEN overlap syndrome are rare, severe cutaneous adverse reactions usually triggered by medications. In addition to tertiary-level supportive care, various systemic therapies have been used including glucocorticoids, intravenous immunoglobulins (IVIGs), cyclosporin, N-acetylcysteine, thalidomide, infliximab, etanercept, and plasmapheresis. There is an unmet need to understand the efficacy of these interventions., Objectives: To assess the effects of systemic therapies (medicines delivered orally, intramuscularly, or intravenously) for the treatment of SJS, TEN, and SJS/TEN overlap syndrome., Search Methods: We searched the following databases up to March 2021: the Cochrane Skin Specialised Register, CENTRAL, MEDLINE, and Embase. We also searched five clinical trial registers, the reference lists of all included studies and of key review articles, and a number of drug manufacturer websites. We searched for errata or retractions of included studies., Selection Criteria: We included only randomised controlled trials (RCTs) and prospective observational comparative studies of participants of any age with a clinical diagnosis of SJS, TEN, or SJS/TEN overlap syndrome. We included all systemic therapies studied to date and permitted comparisons between each therapy, as well as between therapy and placebo., Data Collection and Analysis: We used standard methodological procedures as specified by Cochrane. Our primary outcomes were SJS/TEN-specific mortality and adverse effects leading to discontinuation of SJS/TEN therapy. Secondary outcomes included time to complete re-epithelialisation, intensive care unit length of stay, total hospital length of stay, illness sequelae, and other adverse effects attributed to systemic therapy. We rated the certainty of the evidence for each outcome using GRADE., Main Results: We included nine studies with a total of 308 participants (131 males and 155 females) from seven countries. We included two studies in the quantitative meta-analysis. We included three RCTs and six prospective, controlled observational studies. Sample sizes ranged from 10 to 91. Most studies did not report study duration or time to follow-up. Two studies reported a mean SCORe of Toxic Epidermal Necrosis (SCORTEN) of 3 and 1.9. Seven studies did not report SCORTEN, although four of these studies reported average or ranges of body surface area (BSA) (means ranging from 44% to 51%). Two studies were set in burns units, two in dermatology wards, one in an intensive care unit, one in a paediatric ward, and three in unspecified inpatient units. Seven studies reported a mean age, which ranged from 29 to 56 years. Two studies included paediatric participants (23 children). We assessed the results from one of three RCTs as low risk of bias in all domains, one as high, and one as some concerns. We judged the results from all six prospective observational comparative studies to be at a high risk of bias. We downgraded the certainty of the evidence because of serious risk of bias concerns and for imprecision due to small numbers of participants. The interventions assessed included systemic corticosteroids, tumour necrosis factor-alpha (TNF-alpha) inhibitors, cyclosporin, thalidomide, N-acetylcysteine, IVIG, and supportive care. No data were available for the main comparisons of interest as specified in the review protocol: etanercept versus cyclosporin, etanercept versus IVIG, IVIG versus supportive care, IVIG versus cyclosporin, and cyclosporin versus corticosteroids. Corticosteroids versus no corticosteroids It is uncertain if there is any difference between corticosteroids (methylprednisolone 4 mg/kg/day for two more days after fever had subsided and no new lesions had developed) and no corticosteroids on disease-specific mortality (risk ratio (RR) 2.55, 95% confidence interval (CI) 0.72 to 9.03; 2 studies; 56 participants; very low-certainty evidence). Time to complete re-epithelialisation, length of hospital stay, and adverse effects leading to discontinuation of therapy were not reported. IVIG versus no IVIG It is uncertain if there is any difference between IVIG (0.2 to 0.5 g/kg cumulative dose over three days) and no IVIG in risk of disease-specific mortality (RR 0.33, 95% CI 0.04 to 2.91); time to complete re-epithelialisation (mean difference (MD) -2.93 days, 95% CI -4.4 to -1.46); or length of hospital stay (MD -2.00 days, 95% CI -5.81 to 1.81). All results in this comparison were based on one study with 36 participants, and very low-certainty evidence. Adverse effects leading to discontinuation of therapy were not reported. Etanercept (TNF-alpha inhibitor) versus corticosteroids Etanercept (25 mg (50 mg if weight > 65 kg) twice weekly "until skin lesions healed") may reduce disease-specific mortality compared to corticosteroids (intravenous prednisolone 1 to 1.5 mg/kg/day "until skin lesions healed") (RR 0.51, 95% CI 0.16 to 1.63; 1 study; 91 participants; low-certainty evidence); however, the CIs were consistent with possible benefit and possible harm. Serious adverse events, such as sepsis and respiratory failure, were reported in 5 of 48 participants with etanercept and 9 of 43 participants with corticosteroids, but it was not clear if they led to discontinuation of therapy. Time to complete re-epithelialisation and length of hospital stay were not reported. Cyclosporin versus IVIG It is uncertain if there is any difference between cyclosporin (3 mg/kg/day or intravenous 1 mg/kg/day until complete re-epithelialisation, then tapered off (10 mg/day reduction every 48 hours)) and IVIG (continuous infusion 0.75 g/kg/day for 4 days (total dose 3 g/kg) in participants with normal renal function) in risk of disease-specific mortality (RR 0.13, 95% CI 0.02 to 0.98, 1 study; 22 participants; very low-certainty evidence). Time to complete re-epithelialisation, length of hospital stay, and adverse effects leading to discontinuation of therapy were not reported. No studies measured intensive care unit length of stay., Authors' Conclusions: When compared to corticosteroids, etanercept may result in mortality reduction. For the following comparisons, the certainty of the evidence for disease-specific mortality is very low: corticosteroids versus no corticosteroids, IVIG versus no IVIG and cyclosporin versus IVIG. There is a need for more multicentric studies, focused on the most important clinical comparisons, to provide reliable answers about the best treatments for SJS/TEN., (Copyright © 2022 The Cochrane Collaboration. Published by John Wiley & Sons, Ltd.)
- Published
- 2022
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38. Population perspective comparing COVID-19 to all and common causes of death during the first wave of the pandemic in seven European countries.
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Olabi B, Bagaria J, Bhopal SS, Curry GD, Villarroel N, and Bhopal R
- Abstract
Objectives: Mortality statistics on the COVID-19 pandemic have led to widespread concern and fear. To contextualise these data, we compared mortality related to COVID-19 during the first wave of the pandemic across seven countries in Europe with all and common causes of death, stratifying by age and sex. We also calculated deaths as a proportion of the population by age and sex., Study Design: Analysis of population mortality data., Methods: COVID-19 related mortality and population statistics from seven European countries were extracted: England and Wales, Italy, Germany, Spain, France, Portugal and Netherlands. Available data spanned 14-16 weeks since the first recorded deaths in each country, except Spain, where only comparable stratified data over an 8-week time period was available. The Global Burden of Disease database provided data on all deaths and those from pneumonia, cardiovascular disease combining ischaemic heart disease and stroke, chronic obstructive pulmonary disease, cancer, road traffic accidents and dementia in 2017., Results: Deaths related to COVID-19, while modest overall, varied considerably by age. Deaths as a percentage of all cause deaths during the time period under study ranged from <0.01% in children in Germany, Portugal and Netherlands, to as high as 41.65% for men aged over 80 years in England and Wales. The percentage of the population who died from COVID-19 was less than 0.2% in every age group under the age of 80. In each country, over the age of 80, these proportions were: England and Wales 1.27% males, 0.87% females; Italy 0.6% males, 0.38% females; Germany 0.13% males, 0.09% females; France 0.39% males, 0.2% females; Portugal 0.2% males, 0.15% females; and Netherlands 0.6% males, 0.4% females., Conclusions: Mortality rates from COVID-19 during the first wave of the pandemic were low including when compared to other common causes of death and are likely to decline further while control measures are maintained, treatments improve and vaccination is instituted. These data may help people to contextualise their risk and for decision-making by policymakers., Competing Interests: None reported., (© 2021 The Author(s).)
- Published
- 2021
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39. Blood and immune development in human fetal bone marrow and Down syndrome.
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Jardine L, Webb S, Goh I, Quiroga Londoño M, Reynolds G, Mather M, Olabi B, Stephenson E, Botting RA, Horsfall D, Engelbert J, Maunder D, Mende N, Murnane C, Dann E, McGrath J, King H, Kucinski I, Queen R, Carey CD, Shrubsole C, Poyner E, Acres M, Jones C, Ness T, Coulthard R, Elliott N, O'Byrne S, Haltalli MLR, Lawrence JE, Lisgo S, Balogh P, Meyer KB, Prigmore E, Ambridge K, Jain MS, Efremova M, Pickard K, Creasey T, Bacardit J, Henderson D, Coxhead J, Filby A, Hussain R, Dixon D, McDonald D, Popescu DM, Kowalczyk MS, Li B, Ashenberg O, Tabaka M, Dionne D, Tickle TL, Slyper M, Rozenblatt-Rosen O, Regev A, Behjati S, Laurenti E, Wilson NK, Roy A, Göttgens B, Roberts I, Teichmann SA, and Haniffa M
- Subjects
- B-Lymphocytes cytology, Dendritic Cells cytology, Down Syndrome metabolism, Down Syndrome pathology, Endothelial Cells pathology, Eosinophils cytology, Erythroid Cells cytology, Granulocytes cytology, Humans, Immunity, Myeloid Cells cytology, Stromal Cells cytology, Bone Marrow, Bone Marrow Cells cytology, Down Syndrome blood, Down Syndrome immunology, Fetus cytology, Hematopoiesis, Immune System cytology
- Abstract
Haematopoiesis in the bone marrow (BM) maintains blood and immune cell production throughout postnatal life. Haematopoiesis first emerges in human BM at 11-12 weeks after conception
1,2 , yet almost nothing is known about how fetal BM (FBM) evolves to meet the highly specialized needs of the fetus and newborn. Here we detail the development of FBM, including stroma, using multi-omic assessment of mRNA and multiplexed protein epitope expression. We find that the full blood and immune cell repertoire is established in FBM in a short time window of 6-7 weeks early in the second trimester. FBM promotes rapid and extensive diversification of myeloid cells, with granulocytes, eosinophils and dendritic cell subsets emerging for the first time. The substantial expansion of B lymphocytes in FBM contrasts with fetal liver at the same gestational age. Haematopoietic progenitors from fetal liver, FBM and cord blood exhibit transcriptional and functional differences that contribute to tissue-specific identity and cellular diversification. Endothelial cell types form distinct vascular structures that we show are regionally compartmentalized within FBM. Finally, we reveal selective disruption of B lymphocyte, erythroid and myeloid development owing to a cell-intrinsic differentiation bias as well as extrinsic regulation through an altered microenvironment in Down syndrome (trisomy 21)., (© 2021. The Author(s), under exclusive licence to Springer Nature Limited.)- Published
- 2021
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40. A roadmap for the Human Developmental Cell Atlas.
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Haniffa M, Taylor D, Linnarsson S, Aronow BJ, Bader GD, Barker RA, Camara PG, Camp JG, Chédotal A, Copp A, Etchevers HC, Giacobini P, Göttgens B, Guo G, Hupalowska A, James KR, Kirby E, Kriegstein A, Lundeberg J, Marioni JC, Meyer KB, Niakan KK, Nilsson M, Olabi B, Pe'er D, Regev A, Rood J, Rozenblatt-Rosen O, Satija R, Teichmann SA, Treutlein B, Vento-Tormo R, and Webb S
- Subjects
- Adult, Animals, Atlases as Topic, Cell Culture Techniques, Cell Survival, Data Visualization, Female, Humans, Imaging, Three-Dimensional, Male, Models, Animal, Organoids cytology, Stem Cells cytology, Cell Movement, Cell Tracking, Cells cytology, Developmental Biology methods, Embryo, Mammalian cytology, Fetus cytology, Information Dissemination, Organogenesis genetics
- Abstract
The Human Developmental Cell Atlas (HDCA) initiative, which is part of the Human Cell Atlas, aims to create a comprehensive reference map of cells during development. This will be critical to understanding normal organogenesis, the effect of mutations, environmental factors and infectious agents on human development, congenital and childhood disorders, and the cellular basis of ageing, cancer and regenerative medicine. Here we outline the HDCA initiative and the challenges of mapping and modelling human development using state-of-the-art technologies to create a reference atlas across gestation. Similar to the Human Genome Project, the HDCA will integrate the output from a growing community of scientists who are mapping human development into a unified atlas. We describe the early milestones that have been achieved and the use of human stem-cell-derived cultures, organoids and animal models to inform the HDCA, especially for prenatal tissues that are hard to acquire. Finally, we provide a roadmap towards a complete atlas of human development., (© 2021. Springer Nature Limited.)
- Published
- 2021
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41. Evidence-based management of eczema: five things that should be done more and five things that should be dropped.
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Olabi B and Williams HC
- Subjects
- Administration, Topical, Emollients therapeutic use, Humans, Quality of Life, Randomized Controlled Trials as Topic, Systematic Reviews as Topic, Dermatitis, Atopic drug therapy, Eczema therapy, Evidence-Based Medicine
- Abstract
Purpose of Review: We provide readers with an evidence-informed opinion on current treatments for eczema (atopic dermatitis) with the intention of improving patient care. We suggest five treatment aspects that should be promoted and five that should be demoted. Evidence sources include key randomized controlled trials and systematic reviews., Recent Findings: Under-treatment of eczema can be countered by more aggressive use of topical therapies including the 'get control then keep control' regimen, and systemics for severe disease, supplemented with good patient education. Topical corticosteroids should be used once daily rather than twice daily. Topical calcineurin inhibitors are useful for sensitive sites. There is little evidence to support the continued use of oral antihistamines, oral or topical antistaphylococcal treatments for infected eczema or probiotics for treating eczema. Nonpharmacological treatments including silk clothing, ion-exchange water softeners and emollient bath additives have not been shown to benefit eczema patients. Despite promising pilot studies, large trials suggest that emollients from birth do not prevent eczema and may result in harms such as increased skin infections and food allergy., Summary: New evidence-based insights on existing and newer treatments allow clinicians the opportunity to change their practice in a way that enhances patients' quality of life., (Copyright © 2021 Wolters Kluwer Health, Inc. All rights reserved.)
- Published
- 2021
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42. Children and young people remain at low risk of COVID-19 mortality.
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Bhopal SS, Bagaria J, Olabi B, and Bhopal R
- Subjects
- Adolescent, Age Distribution, Child, Child, Preschool, Europe epidemiology, Humans, Infant, Infant, Newborn, Pandemics, Republic of Korea epidemiology, Risk Factors, SARS-CoV-2, United States epidemiology, Young Adult, COVID-19 mortality
- Published
- 2021
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43. Single-cell multi-omics analysis of the immune response in COVID-19.
- Author
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Stephenson E, Reynolds G, Botting RA, Calero-Nieto FJ, Morgan MD, Tuong ZK, Bach K, Sungnak W, Worlock KB, Yoshida M, Kumasaka N, Kania K, Engelbert J, Olabi B, Spegarova JS, Wilson NK, Mende N, Jardine L, Gardner LCS, Goh I, Horsfall D, McGrath J, Webb S, Mather MW, Lindeboom RGH, Dann E, Huang N, Polanski K, Prigmore E, Gothe F, Scott J, Payne RP, Baker KF, Hanrath AT, Schim van der Loeff ICD, Barr AS, Sanchez-Gonzalez A, Bergamaschi L, Mescia F, Barnes JL, Kilich E, de Wilton A, Saigal A, Saleh A, Janes SM, Smith CM, Gopee N, Wilson C, Coupland P, Coxhead JM, Kiselev VY, van Dongen S, Bacardit J, King HW, Rostron AJ, Simpson AJ, Hambleton S, Laurenti E, Lyons PA, Meyer KB, Nikolić MZ, Duncan CJA, Smith KGC, Teichmann SA, Clatworthy MR, Marioni JC, Göttgens B, and Haniffa M
- Subjects
- Cross-Sectional Studies, Humans, Monocytes immunology, Receptors, Antigen, B-Cell immunology, Receptors, Antigen, T-Cell immunology, T-Lymphocytes immunology, COVID-19 immunology, Proteome, SARS-CoV-2 immunology, Single-Cell Analysis methods, Transcriptome
- Abstract
Analysis of human blood immune cells provides insights into the coordinated response to viral infections such as severe acute respiratory syndrome coronavirus 2, which causes coronavirus disease 2019 (COVID-19). We performed single-cell transcriptome, surface proteome and T and B lymphocyte antigen receptor analyses of over 780,000 peripheral blood mononuclear cells from a cross-sectional cohort of 130 patients with varying severities of COVID-19. We identified expansion of nonclassical monocytes expressing complement transcripts (CD16
+ C1QA/B/C+ ) that sequester platelets and were predicted to replenish the alveolar macrophage pool in COVID-19. Early, uncommitted CD34+ hematopoietic stem/progenitor cells were primed toward megakaryopoiesis, accompanied by expanded megakaryocyte-committed progenitors and increased platelet activation. Clonally expanded CD8+ T cells and an increased ratio of CD8+ effector T cells to effector memory T cells characterized severe disease, while circulating follicular helper T cells accompanied mild disease. We observed a relative loss of IgA2 in symptomatic disease despite an overall expansion of plasmablasts and plasma cells. Our study highlights the coordinated immune response that contributes to COVID-19 pathogenesis and reveals discrete cellular components that can be targeted for therapy.- Published
- 2021
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44. Vaccines for COVID-19: learning from ten phase II trials to inform clinical and public health vaccination programmes.
- Author
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Bhopal SS, Olabi B, and Bhopal R
- Subjects
- COVID-19 epidemiology, COVID-19 prevention & control, Clinical Trials, Phase II as Topic, Humans, Immunization Programs, Public Health, COVID-19 Vaccines administration & dosage, COVID-19 Vaccines adverse effects, COVID-19 Vaccines immunology
- Abstract
Public health professionals and clinicians, in many countries, are immersed in the ongoing and upcoming vaccination programmes for COVID-19. Published information from vaccine trials is complex. There are important and helpful insights about the nature of the available and forthcoming vaccines, immune responses and side-effects from phase II trials. We have systematically summarised information from 10 such trials on the nature of the vaccines, exclusions from the trials, immunological effects and side-effects. Some important information within these trial reports is not available in the phase III trial articles, so a complete picture requires examination of phase II and phase III trials for each vaccine. We recommend our systematic approach for the examination of other upcoming COVID-19 vaccine phase II and III trials., (Copyright © 2021 The Royal Society for Public Health. Published by Elsevier Ltd. All rights reserved.)
- Published
- 2021
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45. Defining the Skin Cellular Community Using Single-Cell Genomics to Advance Precision Medicine.
- Author
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Dubois A, Gopee N, Olabi B, and Haniffa M
- Subjects
- Data Analysis, Humans, Sequence Analysis, RNA, Genomics, Precision Medicine, Single-Cell Analysis methods, Skin cytology
- Abstract
Single-cell genomics has revolutionized biological science, enabling high-resolution analysis of human tissues. The ability to demonstrate the role and function of distinct cell types comprising human tissues paves the way for a new understanding of cellular pathways, interactions, and future research directions. The skin, easily accessible and possessing a diverse and complex role in defending us both physically and immunologically from the outside world, lends itself ideally to single-cell genomics analysis. Here, we outline the benefits of single-cell RNA sequencing while also highlighting the challenges in achieving a meaningful result from its use. Key milestones relating to the study of skin in this way are introduced, covering both healthy and diseased states, and we discuss the potential promise of single-cell RNA sequencing to result in tangible medical advances, with a particular focus on precision medicine., (Copyright © 2021 The Authors. Published by Elsevier Inc. All rights reserved.)
- Published
- 2021
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46. Developmental cell programs are co-opted in inflammatory skin disease.
- Author
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Reynolds G, Vegh P, Fletcher J, Poyner EFM, Stephenson E, Goh I, Botting RA, Huang N, Olabi B, Dubois A, Dixon D, Green K, Maunder D, Engelbert J, Efremova M, Polański K, Jardine L, Jones C, Ness T, Horsfall D, McGrath J, Carey C, Popescu DM, Webb S, Wang XN, Sayer B, Park JE, Negri VA, Belokhvostova D, Lynch MD, McDonald D, Filby A, Hagai T, Meyer KB, Husain A, Coxhead J, Vento-Tormo R, Behjati S, Lisgo S, Villani AC, Bacardit J, Jones PH, O'Toole EA, Ogg GS, Rajan N, Reynolds NJ, Teichmann SA, Watt FM, and Haniffa M
- Subjects
- Animals, Atlases as Topic, Cell Movement, Datasets as Topic, Dendritic Cells immunology, Dermatitis, Atopic immunology, Dermatologic Agents pharmacology, Humans, Immunity, Innate genetics, Methotrexate pharmacology, Mice, Phagocytes immunology, Psoriasis immunology, Single-Cell Analysis, Skin cytology, Skin immunology, T-Lymphocytes immunology, Transcriptome, Dermatitis, Atopic embryology, Dermatitis, Atopic pathology, Psoriasis embryology, Psoriasis pathology, Skin embryology
- Abstract
The skin confers biophysical and immunological protection through a complex cellular network established early in embryonic development. We profiled the transcriptomes of more than 500,000 single cells from developing human fetal skin, healthy adult skin, and adult skin with atopic dermatitis and psoriasis. We leveraged these datasets to compare cell states across development, homeostasis, and disease. Our analysis revealed an enrichment of innate immune cells in skin during the first trimester and clonal expansion of disease-associated lymphocytes in atopic dermatitis and psoriasis. We uncovered and validated in situ a reemergence of prenatal vascular endothelial cell and macrophage cellular programs in atopic dermatitis and psoriasis lesional skin. These data illustrate the dynamism of cutaneous immunity and provide opportunities for targeting pathological developmental programs in inflammatory skin diseases., (Copyright © 2021, American Association for the Advancement of Science.)
- Published
- 2021
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47. Thyrotoxicosis Associated with Ustekinumab Treatment for Psoriasis.
- Author
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Olabi B and Ayob S
- Abstract
Biologic treatments have revolutionised the management of psoriasis in recent years; however, data on their safety profile in large populations and long-term effects are being gathered on an ongoing basis. Ustekinumab is a monoclonal antibody that targets interleukin-12/23 used in the treatment of moderate-to-severe psoriasis. Here, we report the case of a 32-year-old Caucasian gentleman who developed thyrotoxicosis following the commencement of ustekinumab treatment. Following control of thyroid status by the Endocrinology team, this recurred after recommencement of ustekinumab on two further occasions over a 5-year period. This is the second known reported association of this nature. Awareness of these possible adverse effects is imperative in managing patients and informing decision-making, and further long-term studies will help elucidate the precise safety profiles of biologic treatments., Competing Interests: BO has received travel expenses for international conference attendance as a speciality trainee from Celgene, LEO Pharma, and Eli Lilly. SA has received speaker honoraria from Almirall and Leo Pharma and travel and accommodation expenses for national and international conference attendance from Celgene, Janssen, Novartis, LEO Pharma, Eli Lilly, Abbvie, and Almirall., (Copyright © 2020 Bayanne Olabi and Shanti Ayob.)
- Published
- 2020
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48. Medical leadership in the NHS during the COVID-19 pandemic.
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Warraich S, Olabi B, Azhar B, Tanzeem SF, and Fischer M
- Subjects
- Betacoronavirus, COVID-19, Humans, SARS-CoV-2, United Kingdom epidemiology, Coronavirus Infections epidemiology, Leadership, Pandemics, Physicians, Pneumonia, Viral epidemiology, State Medicine organization & administration, Systems Analysis
- Abstract
Amid the global COVID-19 pandemic, adaptation of healthcare systems, with strong medical leadership, has been integral to coping with the ever-changing situation. This article is based on the personal experiences of doctors in the NHS and insights into the frontline response to this situation. It reflects on leadership dilemmas and strategies implemented to overcome them, with a focus on systems thinking and adaptive leadership.
- Published
- 2020
- Full Text
- View/download PDF
49. Extending the phenotype of midface toddler excoriation syndrome (MiTES): Five new cases in three families with PR domain containing protein 12 (PRDM12) mutations.
- Author
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Inamadar AC, Vinay K, Olabi B, Sarveswaran N, Bishnoi A, Woods CG, and Moss C
- Subjects
- Adult, Child, Child, Preschool, Female, Humans, Infant, Male, Phenotype, Syndrome, Carrier Proteins genetics, Facial Injuries genetics, Mutation, Nerve Tissue Proteins genetics, Self-Injurious Behavior genetics
- Published
- 2019
- Full Text
- View/download PDF
50. Cutaneous Polyarteritis Nodosa Presenting Atypically with Severe Pharyngeal Ulceration.
- Author
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Olabi B, Mason JC, and Farah Z
- Abstract
Polyarteritis nodosa (PAN) is a multisystem, necrotising vasculitis of small- and medium-sized arteries with a predilection for the visceral vessels. Cutaneous PAN is a rare variant with symptomatic vasculitis limited to the skin, typically presenting as nodular lesions on the extremities with a propensity to ulcerate. We describe a rare case of histologically confirmed cutaneous PAN presenting in a 55-year-old Ghanaian woman with severe oropharyngeal ulceration. This was associated with dysphagia and significant weight loss. Oesophagoduodenoscopy showed that the ulceration extended throughout the oropharynx. Systemic polyarteritis nodosa was ruled out with magnetic resonance angiography. Our patient was treated successfully with corticosteroids and methotrexate. This case suggests that cutaneous PAN should be considered in the differential diagnosis of patients with oropharyngeal ulceration and that histological assessment is pivotal in establishing the diagnosis early in order to instigate appropriate therapy.
- Published
- 2019
- Full Text
- View/download PDF
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