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1. Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

2. Altered and allele-specific open chromatin landscape reveals epigenetic and genetic regulators of innate immunity in COVID-19.

3. Protocol for fast scRNA-seq raw data processing using scKB and non-arbitrary quality control with COPILOT

4. How to find genomic regions relevant for gene regulation

5. A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants

6. Identifying interpretable gene-biomarker associations with functionally informed kernel-based tests in 190,000 exomes

7. Timed global reorganization of protein synthesis during neocortex neurogenesis at codon resolution

8. A community-driven roadmap to advance research on translated open reading frames detected by Ribo-seq

9. The BTB transcription factors ZBTB11 and ZFP131 maintain pluripotency by pausing POL II at pro-differentiation genes

10. Spatio-temporal mRNA dynamics in the early zebrafish embryo

11. The Chloroplast RNA Binding Protein CP31A Has a Preference for mRNAs Encoding the Subunits of the Chloroplast NAD(P)H Dehydrogenase Complex and Is Required for Their Accumulation

12. A single cell Arabidopsis root atlas reveals developmental trajectories in wild type and cell identity mutants

13. Single-cell-resolved dynamics of chromatin architecture delineate cell and regulatory states in wildtype and cloche/npas4l mutant zebrafish embryos

14. A Conserved Noncoding Locus Regulates Random Monoallelic Xist Expression across a Topological Boundary

15. Severe COVID-19 is marked by a dysregulated myeloid cell compartment

16. Integrative classification of human coding and noncoding genes through RNA metabolism profiles

17. SaTAnn quantifies translation on the functionally heterogeneous transcriptome

18. Redundant regulation

19. McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes

20. DDX54 regulates transcriptome dynamics during DNA damage response

21. The RNA workbench: Best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

22. The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy

23. The mRNA-bound proteome of the early fly embryo

24. Explicit DNase sequence bias modeling enables high-resolution transcription factor footprint detection

25. COUGER-co-factors associated with uniquely-bound genomic regions

26. Global target mRNA specification and regulation by the RNA-binding protein ZFP36

27. Chromatin accessibility reveals insights into androgen receptor activation and transcriptional specificity

28. Conserved expression patterns predict microRNA targets.

34. Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

36. Genome annotation assessment in Drosophila melanogaster

37. JACUSA: site-specific identification of RNA editing events from replicate sequencing data

38. Genome-wide search for miRNA-target interactions in Arabidopsis thaliana with an integrated approach

39. Spatial preferences of microRNA targets in 3' untranslated regions

40. Optimized mixed Markov models for motif identification

41. MPEG-4 for Digital Video Broadcasting.

42. Arabidopsis uses a molecular grounding mechanism and a biophysical circuit breaker to limit floral abscission signaling.

43. High-quality peptide evidence for annotating non-canonical open reading frames as human proteins.

44. Metadata-guided feature disentanglement for functional genomics.

45. MatK impacts differential chloroplast translation by limiting spliced tRNA-K(UUU) abundance.

46. Liam tackles complex multimodal single-cell data integration challenges.

47. Genome-wide screening identifies Trim33 as an essential regulator of dendritic cell differentiation.

48. Stress-induced nuclear speckle reorganization is linked to activation of immediate early gene splicing.

49. Toward Identification of Functional Sequences and Variants in Noncoding DNA.

50. Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root.

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