8 results on '"Ogata, Alana F."'
Search Results
2. The Virus Bioresistor: Wiring Virus Particles for the Direct, Label-Free Detection of Target Proteins.
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Bhasin, Apurva, Ogata, Alana F., Briggs, Jeffrey S., Tam, Phillip Y., Tan, Ming X., Weiss, Gregory A., and Penner, Reginald M.
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ELECTRIC circuits , *PROTEINS , *ELECTRIC capacity , *PARTICLES , *SERUM albumin - Abstract
The virus bioresistor (VBR) is a chemiresistor that directly transfers information from virus particles to an electrical circuit. Specifically, the VBR enables the label-free detection of a target protein that is recognized and bound by filamentous M13 virus particles, each with dimensions of 6 nm (w) × 1 μm (l), entrained in an ultrathin (~250 nm) composite virus-polymer resistor. Signal produced by the specific binding of virus to target molecules is monitored using the electrical impedance of the VBR: The VBR presents a complex impedance that is modeled by an equivalent circuit containing just three circuit elements: a solution resistance (Rsoln), a channel resistance (RVBR), and an interfacial capacitance (CVBR). The value of RVBR, measured across 5 orders of magnitude in frequency, is increased by the specific recognition and binding of a target protein to the virus particles in the resistor, producing a signal ΔRVBR. The VBR concept is demonstrated using a model system in which human serum albumin (HSA, 66 kDa) is detected in a phosphate buffer solution. The VBR cleanly discriminates between a change in the electrical resistance of the buffer, measured by Rsoln, and selective binding of HSA to virus particles, measured by RVBR. The ΔRVBR induced by HSA binding is as high as 200 Ω, contributing to low sensor-to-sensor coefficients-of-variation (<15%) across the entire calibration curve for HSA from 7.5 nM to 900 nM. The response time for the VBR is 3-30 s. [ABSTRACT FROM AUTHOR]
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- 2018
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3. Virus-Enabled Biosensor for Human Serum Albumin.
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Ogata, Alana F., Edgar, Joshua M., Majumdar, Sudipta, Briggs, Jeffrey S., Patterson, Shae V., Tan, Ming X., Kudlacek, Stephan T., Schneider, Christine A., Weiss, Gregory A., and Penner, Reginald M.
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RECOMBINANT viruses , *SERUM albumin , *BUFFER solutions , *AQUEOUS solutions , *CONDUCTING polymers , *ELECTROCHEMICAL sensors - Abstract
The label-free detection of human serum albumin (HSA) in aqueous buffer is demonstrated using a simple, monolithic, two-electrode electrochemical biosensor. In this device, both millimeter-scale electrodes are coated with a thin layer of a composite containing M13 virus particles and the electronically conductive polymer poly(3,4-ethylenedioxy thiophene) or PEDOT. These virus particles, engineered to selectively bind HSA, serve as receptors in this biosensor. The resistance component of the electrical impedance, Zre, measured between these two electrodes provides electrical transduction of HSA binding to the virus-PEDOT film. The analysis of sample volumes as small as 50 μL is made possible using a microfluidic cell. Upon exposure to HSA, virus-PEDOT films show a prompt increase in Zre within 5 s and a stable Zre signal within 15 min. HSA concentrations in the range from 100 nM to 5 μM are detectable. Sensor-to-sensor reproducibility of the HSA measurement is characterized by a coefficient-of-variance (COV) ranging from 2% to 8% across this entire concentration range. In addition, virus-PEDOT sensors successfully detected HSA in synthetic urine solutions. [ABSTRACT FROM AUTHOR]
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- 2017
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4. Multisystem inflammatory syndrome in children is driven by zonulin-dependent loss of gut mucosal barrier.
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Yonker, Lael M., Gilboa, Tal, Ogata, Alana F., Senussi, Yasmeen, Lazarovits, Roey, Boribong, Brittany P., Bartsch, Yannic C., Loiselle, Maggie, Rivas, Magali Noval, Porritt, Rebecca A., Lima, Rosiane, Davis, Jameson P., Farkas, Eva J., Burns, Madeleine D., Young, Nicola, Mahajan, Vinay S., Hajizadeh, Soroush, Lopez, Xcanda I. Herrera, Kreuzer, Johannes, and Morris, Robert
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SYNDROMES in children , *SARS-CoV-2 , *COVID-19 , *GASTROINTESTINAL system , *BIOMARKERS - Abstract
BACKGROUNDWeeks after SARS-CoV-2 infection or exposure, some children develop a severe, life-threatening illness called multisystem inflammatory syndrome in children (MIS-C). Gastrointestinal (GI) symptoms are common in patients with MIS-C, and a severe hyperinflammatory response ensues with potential for cardiac complications. The cause of MIS-C has not been identified to date.METHODSHere, we analyzed biospecimens from 100 children: 19 with MIS-C, 26 with acute COVID-19, and 55 controls. Stools were assessed for SARS-CoV-2 by reverse transcription PCR (RT-PCR), and plasma was examined for markers of breakdown of mucosal barrier integrity, including zonulin. Ultrasensitive antigen detection was used to probe for SARS-CoV-2 antigenemia in plasma, and immune responses were characterized. As a proof of concept, we treated a patient with MIS-C with larazotide, a zonulin antagonist, and monitored the effect on antigenemia and the patient's clinical response.RESULTSWe showed that in children with MIS-C, a prolonged presence of SARS-CoV-2 in the GI tract led to the release of zonulin, a biomarker of intestinal permeability, with subsequent trafficking of SARS-CoV-2 antigens into the bloodstream, leading to hyperinflammation. The patient with MIS-C treated with larazotide had a coinciding decrease in plasma SARS-CoV-2 spike antigen levels and inflammatory markers and a resultant clinical improvement above that achieved with currently available treatments.CONCLUSIONThese mechanistic data on MIS-C pathogenesis provide insight into targets for diagnosing, treating, and preventing MIS-C, which are urgently needed for this increasingly common severe COVID-19-related disease in children. [ABSTRACT FROM AUTHOR]
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- 2021
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5. Electrodeposition-enabled, electrically-transduced sensors and biosensors.
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Choi, Eric J., Drago, Nicholas P., Humphrey, Nicholas J., Van Houten, Justin, Ahn, Jaewan, Lee, Jiyoung, Kim, Il-Doo, Ogata, Alana F., and Penner, Reginald M.
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BIOSENSORS , *CHEMICAL detectors , *HYDROGEN detectors , *CONDUCTING polymers , *RECEPTOR antibodies , *GAS detectors - Abstract
[Display omitted] Electrodeposition and electropolymerization have emerged as versatile tools for the fabrication of chemical and biosensors. The literature in this area, published since 2017, is the main focus of this review. Electropolymerization has played a particularly prominent role in sensor development since its discovery in 1980 by Diaz at IBM. The ability to entrain receptors such as antibodies, engineered virus particles, and metal chelating agents into a conductive polymer sensing element during electropolymerization has proven to be a powerful means of preparing chemiresistors for a variety of analyses. Electrodeposition has also been used to prepare nanostructured metal indicator microelectrodes, enabling of a new modality for transducing biosensors. Electrodeposited metal nanowires have formed the basis for rapid and sensitive sensors for hydrogen gas. Electrodeposition has also been exploited as a powerful means for amplifying weak biosensor signals, extending their dynamic range. Opportunities for the application of electrodeposition and electropolymerization for chemical and biological sensor fabrication and function are discussed. [ABSTRACT FROM AUTHOR]
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- 2023
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6. Ag-coated one-dimensional orthorhombic Nb2O5 fibers as high performance electrodes for lithium storage.
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Cheong, Jun Young, Youn, Doo Young, Kim, Chanhoon, Jung, Ji-Won, Ogata, Alana F., Bae, Jin Gook, and Kim, Il-Doo
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ELECTRODES , *NIOBIUM , *LITHIUM-ion batteries , *ELECTRIC conductivity , *SILVER nanoparticles - Abstract
In the recent times, pseudocapacitive electrode materials have received great attention due to their considerable capability in storing ions at relatively fast charging rates. Among various candidates, niobium (V) pentoxide (Nb 2 O 5 ) has gained much attraction for lithium-ion batteries (LIBs) due to its insertion/extraction reaction with Li, safe redox potential, and considerably good capacity (about 200 mAhg −1 ). Nevertheless, low conductivity of Nb 2 O 5 has so far prevented its use as a viable electrode material for LIBs. In this study, we have successfully coated silver (Ag) nanoparticles (NPs) on the surface of one-dimensional orthorhombic Nb 2 O 5 fiber (1D T-Nb 2 O 5 ) using simple electrospinning processing. Ag NPs coated Nb 2 O 5 fibers (Ag-1D T-Nb 2 O 5 ) provided faster electron pathways, resulting in much improved capacity at a given current density with superior rate capabilities compared with pristine 1D T-Nb 2 O 5 . In addition, 1D T-Nb 2 O 5 was more suitable for coating Ag NPs compared with T-Nb 2 O 5 NPs, where its structural integrity was maintained even after cycling. As a result, effective coating of conductive Ag NPs on the 1D T-Nb 2 O 5 resulted in excellent cycle retention characteristics (179.7 mAhg −1 after 500 cycles at 500 mA g −1 ) as well as superior rate capabilities (103.6 mAhg −1 at a current density of 5000 mA g −1 ). [ABSTRACT FROM AUTHOR]
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- 2018
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7. Supercharging a MnO2 Nanowire: An Amine-Altered Morphology Retains Capacity at High Rates and Mass Loadings.
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Chandran, Girija Thesma, Jha, Gaurav, Shaopeng Qiao, Mya Le Thai, Rajen Dutta, Ogata, Alana F., Ji-Soo Jang, Il-Doo Kim, and Penner, Reginald M.
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NANOWIRES , *MANGANESE oxides , *MASS (Physics) , *ENERGY storage , *ELECTROCHEMICAL analysis - Abstract
The influence of hexamethylenetetraamine (HMTA) on the morphology of δ-MnO2 and its properties for electrical energy storage are investigated, specifically for ultrathick δ-MnO2 layers in the micron scale. Planar arrays of gold@δ-MnO2, core@shell nanowires, were prepared by electrodeposition with and without the HMTA and their electrochemical properties were evaluated. HMTA alters the MnO2 in three ways: First, it creates a more open morphology for the MnO2 coating, characterized by "petals" with a thickness of 6 to 9 nm, rather than much thinner δ-MnO2 sheets seen in the absence of HMTA. Second, the electronic conductivity of the δ-MnO2 is increased by an order of magnitude. Third, δ-MnO2 prepared in HMTA shows a (001) interlayer spacing that is expanded by ≈30% possibly accelerating Li transport. The net effect of "HTMA doping" is to dramatically improve high rate performance, culminating in an increase in the specific capacity for the thickest MnO2 shells examined here by a factor of 15 at 100 mV/s. [ABSTRACT FROM AUTHOR]
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- 2017
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8. Contributions from Excited-State Proton and Electron Transfer to the Blinking and Photobleaching Dynamics of Alizarin and Purpurin.
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Tan, Jenna A., Garakyaraghi, Sofia, Tagami, Kan A., Frano, Kristen A., Crockett, Heidi M., Ogata, Alana F., Patterson, Joshua D., and Wustholz, Kristin L.
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EXCITED state chemistry , *CHARGE exchange , *ALIZARIN - Abstract
The blinking and photobleaching dynamics of alizarin (1,2-dihydroxyanthraquinone) and purpurin (1,2,4-trihydroxyanthraquinone) are investigated using single-molecule spectroscopy. The time-dependent emission of alizarin and purpurin on glass under N2 is analyzed using the change point detection (CPD) method to compile on- and off-event distributions. The number of distinct emissive events per molecule is about four times higher for alizarin relative to purpurin, consistent with an excited-state intramolecular proton transfer (ESIPT) process to populate an emissive tautomer state. To elucidate the mechanism for blinking (i.e., switching between on and off events), maximum likelihood estimation (MLE), goodness-of-fit tests based on the Kolmogorov-Smirnov (KS) statistic, and the log-likelihood ratio (LLR) tests are used to establish the best fits to the on- and off-interval probability distributions. For both alizarin and purpurin the on intervals are log-normally distributed, and off intervals are Weibull distributed, consistent with a dispersive electron-transfer (ET) kinetics model for blinking (i.e., involving Gaussian-like distributions of activation barriers to ET). Further analysis of the blinking dynamics reveals that ET to a long-lived dark state most often precedes molecular photobleaching, where extended residency in the dark state increases the probability of photobleaching. Based on these findings, mechanisms for the blinking and photobleaching of alizarin and purpurin are proposed. The ability of alizarin to undergo ESIPT enables fast excited-state decay and decreases the probability of ET. In contrast, purpurin exhibits faster injection and slower back ET relative to alizarin, leading to increased photobleaching via a dark radical cation state. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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