18 results on '"Özdoğan, Kadir T."'
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2. Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
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Borry, Maxime, primary, Forsythe, Adrian, additional, Andrades Valtueña, Aida, additional, Hübner, Alexander, additional, Ibrahim, Anan, additional, Quagliariello, Andrea, additional, White, Anna E., additional, Kocher, Arthur, additional, Vågene, Åshild J., additional, Bartholdy, Bjørn Peare, additional, Spurīte, Diāna, additional, Ponce-Soto, Gabriel Yaxal, additional, Neumann, Gunnar, additional, Huang, I-Ting, additional, Light, Ian, additional, Velsko, Irina M., additional, Jackson, Iseult, additional, Frangenberg, Jasmin, additional, Serrano, Javier G., additional, Fumey, Julien, additional, Özdoğan, Kadir T., additional, Blevins, Kelly E., additional, Daly, Kevin G., additional, Lopopolo, Maria, additional, Moraitou, Markella, additional, Michel, Megan, additional, van Os, Meriam, additional, Bravo-Lopez, Miriam J., additional, Sarhan, Mohamed S., additional, Dagtas, Nihan D., additional, Oskolkov, Nikolay, additional, Smith, Olivia S., additional, Lebrasseur, Ophélie, additional, Rozwalak, Piotr, additional, Eisenhofer, Raphael, additional, Wasef, Sally, additional, Ramachandran, Shreya L., additional, Vanghi, Valentina, additional, Warinner, Christina, additional, and Fellows Yates, James A., additional
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- 2024
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3. The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean
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Fernandes, Daniel M., Mittnik, Alissa, Olalde, Iñigo, Lazaridis, Iosif, Cheronet, Olivia, Rohland, Nadin, Mallick, Swapan, Bernardos, Rebecca, Broomandkhoshbacht, Nasreen, Carlsson, Jens, Culleton, Brendan J., Ferry, Matthew, Gamarra, Beatriz, Lari, Martina, Mah, Matthew, Michel, Megan, Modi, Alessandra, Novak, Mario, Oppenheimer, Jonas, Sirak, Kendra A., Stewardson, Kristin, Mandl, Kirsten, Schattke, Constanze, Özdoğan, Kadir T., Lucci, Michaela, Gasperetti, Gabriella, Candilio, Francesca, Salis, Gianfranca, Vai, Stefania, Camarós, Edgard, Calò, Carla, Catalano, Giulio, Cueto, Marián, Forgia, Vincenza, Lozano, Marina, Marini, Elisabetta, Micheletti, Margherita, Miccichè, Roberto M., Palombo, Maria R., Ramis, Damià, Schimmenti, Vittoria, Sureda, Pau, Teira, Luís, Teschler-Nicola, Maria, Kennett, Douglas J., Lalueza-Fox, Carles, Patterson, Nick, Sineo, Luca, Coppa, Alfredo, Caramelli, David, Pinhasi, Ron, and Reich, David
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- 2020
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- View/download PDF
4. Facilitating accessible, rapid, and appropriate processing of ancient metagenomic data with AMDirT
- Author
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Borry, Maxime, primary, Forsythe, Adrian, additional, Andrades Valtueña, Aida, additional, Hübner, Alexander, additional, Ibrahim, Anan, additional, Quagliariello, Andrea, additional, White, Anna E., additional, Kocher, Arthur, additional, Vågene, Åshild J., additional, Bartholdy, Bjørn Peare, additional, Spurīte, Diāna, additional, Ponce-Soto, Gabriel Yaxal, additional, Neumann, Gunnar, additional, Huang, I-Ting, additional, Light, Ian, additional, Velsko, Irina M., additional, Jackson, Iseult, additional, Frangenberg, Jasmin, additional, Serrano, Javier G., additional, Fumey, Julien, additional, Özdoğan, Kadir T., additional, Blevins, Kelly E., additional, Daly, Kevin G., additional, Lopopolo, Maria, additional, Moraitou, Markella, additional, Michel, Megan, additional, van Os, Meriam, additional, Bravo-Lopez, Miriam J., additional, Sarhan, Mohamed S., additional, Dagtas, Nihan D., additional, Oskolkov, Nikolay, additional, Smith, Olivia S., additional, Lebrasseur, Ophélie, additional, Rozwalak, Piotr, additional, Eisenhofer, Raphael, additional, Wasef, Sally, additional, Ramachandran, Shreya L., additional, Vanghi, Valentina, additional, Warinner, Christina, additional, and Fellows Yates, James A., additional
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- 2023
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5. Density separation of petrous bone powders for optimized ancient DNA yields
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Fernandes, Daniel Magalhaes, primary, Sirak, Kendra A, additional, Cheronet, Olivia, additional, Novak, Mario, additional, Brück, Florian, additional, Zelger, Evelyn, additional, Llanos-Lizcano, Alejandro, additional, Wagner, Anna, additional, Zettl, Anna, additional, Mandl, Kirsten, additional, Duffett Carlson, Kellie Sara, additional, Oberreiter, Victoria, additional, Özdoğan, Kadir T, additional, Sawyer, Susanna, additional, La Pastina, Francesco, additional, Borgia, Emanuela, additional, Coppa, Alfredo, additional, Dobeš, Miroslav, additional, Velemínský, Petr, additional, Reich, David E, additional, Bell, Lynne S, additional, and Pinhasi, Ron, additional
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- 2023
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6. Author Correction: The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean
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Fernandes, Daniel M., Mittnik, Alissa, Olalde, Iñigo, Lazaridis, Iosif, Cheronet, Olivia, Rohland, Nadin, Mallick, Swapan, Bernardos, Rebecca, Broomandkhoshbacht, Nasreen, Carlsson, Jens, Culleton, Brendan J., Ferry, Matthew, Gamarra, Beatriz, Lari, Martina, Mah, Matthew, Michel, Megan, Modi, Alessandra, Novak, Mario, Oppenheimer, Jonas, Sirak, Kendra A., Stewardson, Kristin, Mandl, Kirsten, Schattke, Constanze, Özdoğan, Kadir T., Lucci, Michaela, Gasperetti, Gabriella, Candilio, Francesca, Salis, Gianfranca, Vai, Stefania, Camarós, Edgard, Calò, Carla, Catalano, Giulio, Cueto, Marián, Forgia, Vincenza, Lozano, Marina, Marini, Elisabetta, Micheletti, Margherita, Miccichè, Roberto M., Palombo, Maria R., Ramis, Damià, Schimmenti, Vittoria, Sureda, Pau, Teira, Luís, Teschler-Nicola, Maria, Kennett, Douglas J., Lalueza-Fox, Carles, Patterson, Nick, Sineo, Luca, Coppa, Alfredo, Caramelli, David, Pinhasi, Ron, and Reich, David
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- 2020
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7. Northeastern Asian and Jomon-related genetic structure in the Three Kingdoms period of Gimhae, Korea
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Gelabert, Pere, primary, Blazyte, Asta, additional, Chang, Yongjoon, additional, Fernandes, Daniel M., additional, Jeon, Sungwon, additional, Hong, Jin Geun, additional, Yoon, Jiyeon, additional, Ko, Youngmin, additional, Oberreiter, Victoria, additional, Cheronet, Olivia, additional, Özdoğan, Kadir T., additional, Sawyer, Susanna, additional, Yang, Songhyok, additional, Greytak, Ellen McRae, additional, Choi, Hansol, additional, Kim, Jungeun, additional, Kim, Jong-Il, additional, Jeong, Choongwon, additional, Bae, Kidong, additional, Bhak, Jong, additional, and Pinhasi, Ron, additional
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- 2022
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8. Northeastern Asian and Jomon-related genetic structure in the Three Kingdoms period of Gimhae, Korea
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LS Late Oudheid, OGKG - Antieke Cultuur, Gelabert, Pere, Blazyte, Asta, Chang, Yongjoon, Fernandes, Daniel M, Jeon, Sungwon, Hong, Jin Geun, Yoon, Jiyeon, Ko, Youngmin, Oberreiter, Victoria, Cheronet, Olivia, Özdoğan, Kadir T, Sawyer, Susanna, Yang, Songhyok, Greytak, Ellen McRae, Choi, Hansol, Kim, Jungeun, Kim, Jong-Il, Jeong, Choongwon, Bae, Kidong, Bhak, Jong, Pinhasi, Ron, LS Late Oudheid, OGKG - Antieke Cultuur, Gelabert, Pere, Blazyte, Asta, Chang, Yongjoon, Fernandes, Daniel M, Jeon, Sungwon, Hong, Jin Geun, Yoon, Jiyeon, Ko, Youngmin, Oberreiter, Victoria, Cheronet, Olivia, Özdoğan, Kadir T, Sawyer, Susanna, Yang, Songhyok, Greytak, Ellen McRae, Choi, Hansol, Kim, Jungeun, Kim, Jong-Il, Jeong, Choongwon, Bae, Kidong, Bhak, Jong, and Pinhasi, Ron
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- 2022
9. A Genetic History of Continuity and Mobility in the Iron Age Central Mediterranean
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Moots, Hannah M., primary, Antonio, Margaret, additional, Sawyer, Susanna, additional, Spence, Jeffrey P., additional, Oberreiter, Victoria, additional, Weiß, Clemens L., additional, Lucci, Michaela, additional, Cherifi, Yahia Mehdi Seddik, additional, La Pastina, Francesco, additional, Genchi, Francesco, additional, Praxmeier, Elisa, additional, Zagorc, Brina, additional, Cheronot, Olivia, additional, Özdoğan, Kadir T., additional, Demetz, Lea, additional, Amrani, Selma, additional, Candilio, Francesca, additional, De Angelis, Daniela, additional, Gasperetti, Gabriella, additional, Fernandes, Daniel, additional, Gao, Ziyue, additional, Fantar, Mounir, additional, Coppa, Alfredo, additional, Pritchard, Jonathan K., additional, and Pinhasi, Ron, additional
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- 2022
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10. Diverse northern Asian and Jomon-related genetic structure discovered among socially complex Three Kingdoms period Gaya region Koreans
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Gelabert, Pere, primary, Blazyte, Asta, additional, Chang, Yongjoon, additional, Fernandes, Daniel M., additional, Jeon, Sungwon, additional, Hong, Jin Geun, additional, Yoon, Jiyeon, additional, Ko, Youngmin, additional, Oberreiter, Victoria, additional, Cheronet, Olivia, additional, Özdoğan, Kadir T., additional, Sawyer, Susanna, additional, Yang, Songhyok, additional, Greytak, Ellen McRae, additional, Choi, Hansol, additional, Kim, Jungeun, additional, Kim, Jong-Il, additional, Bae, Kidong, additional, Bhak, Jong, additional, and Pinhasi, Ron, additional
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- 2021
- Full Text
- View/download PDF
11. Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment
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Gelabert, Pere, primary, Sawyer, Susanna, additional, Bergström, Anders, additional, Margaryan, Ashot, additional, Collin, Thomas C., additional, Meshveliani, Tengiz, additional, Belfer-Cohen, Anna, additional, Lordkipanidze, David, additional, Jakeli, Nino, additional, Matskevich, Zinovi, additional, Bar-Oz, Guy, additional, Fernandes, Daniel M., additional, Cheronet, Olivia, additional, Özdoğan, Kadir T., additional, Oberreiter, Victoria, additional, Feeney, Robin N.M., additional, Stahlschmidt, Mareike C., additional, Skoglund, Pontus, additional, and Pinhasi, Ron, additional
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- 2021
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12. Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment
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Gelabert, Pere, Sawyer, Susanna, Bergström, Anders, Margaryan, Ashot, Collin, Thomas C, Meshveliani, Tengiz, Belfer-Cohen, Anna, Lordkipanidze, David, Jakeli, Nino, Matskevich, Zinovi, Bar-Oz, Guy, Fernandes, Daniel M, Cheronet, Olivia, Özdoğan, Kadir T, Oberreiter, Victoria, Feeney, Robin N M, Stahlschmidt, Mareike C, Skoglund, Pontus, Pinhasi, Ron, Gelabert, Pere, Sawyer, Susanna, Bergström, Anders, Margaryan, Ashot, Collin, Thomas C, Meshveliani, Tengiz, Belfer-Cohen, Anna, Lordkipanidze, David, Jakeli, Nino, Matskevich, Zinovi, Bar-Oz, Guy, Fernandes, Daniel M, Cheronet, Olivia, Özdoğan, Kadir T, Oberreiter, Victoria, Feeney, Robin N M, Stahlschmidt, Mareike C, Skoglund, Pontus, and Pinhasi, Ron
- Abstract
Cave sediments have been shown to preserve ancient DNA but so far have not yielded the genome-scale information of skeletal remains. We retrieved and analyzed human and mammalian nuclear and mitochondrial environmental "shotgun" genomes from a single 25,000-year-old Upper Paleolithic sediment sample from Satsurblia cave, western Georgia:first, a human environmental genome with substantial basal Eurasian ancestry, which was an ancestral component of the majority of post-Ice Age people in the Near East, North Africa, and parts of Europe; second, a wolf environmental genome that is basal to extant Eurasian wolves and dogs and represents a previously unknown, likely extinct, Caucasian lineage; and third, a European bison environmental genome that is basal to present-day populations, suggesting that population structure has been substantially reshaped since the Last Glacial Maximum. Our results provide new insights into the Late Pleistocene genetic histories of these three species and demonstrate that direct shotgun sequencing of sediment DNA, without target enrichment methods, can yield genome-wide data informative of ancestry and phylogenetic relationships.
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- 2021
13. Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment
- Author
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LS Late Oudheid, OGKG - Antieke Cultuur, Gelabert, Pere, Sawyer, Susanna, Bergström, Anders, Margaryan, Ashot, Collin, Thomas C, Meshveliani, Tengiz, Belfer-Cohen, Anna, Lordkipanidze, David, Jakeli, Nino, Matskevich, Zinovi, Bar-Oz, Guy, Fernandes, Daniel M, Cheronet, Olivia, Özdoğan, Kadir T, Oberreiter, Victoria, Feeney, Robin N M, Stahlschmidt, Mareike C, Skoglund, Pontus, Pinhasi, Ron, LS Late Oudheid, OGKG - Antieke Cultuur, Gelabert, Pere, Sawyer, Susanna, Bergström, Anders, Margaryan, Ashot, Collin, Thomas C, Meshveliani, Tengiz, Belfer-Cohen, Anna, Lordkipanidze, David, Jakeli, Nino, Matskevich, Zinovi, Bar-Oz, Guy, Fernandes, Daniel M, Cheronet, Olivia, Özdoğan, Kadir T, Oberreiter, Victoria, Feeney, Robin N M, Stahlschmidt, Mareike C, Skoglund, Pontus, and Pinhasi, Ron
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- 2021
14. A genetic history of the pre-contact Caribbean
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National Geographic Society, Ministero degli Affari Esteri e della Cooperazione Internazionale, National Science Foundation (US), National Institute of General Medical Sciences (US), Paul G. Allen Family Foundation, John Templeton Foundation, Howard Hughes Medical Institute, Fernandes, Daniel, Sirak, Kendra, Ringbauer, Harald, Sedig, Jakob, Rohland, Nadin, Cheronet, Olivia, Mah, Matthew, Mallick, Swapan, Olalde, Iñigo, Culleton, Brendan J., Adamski, Nicole, Bernardos, Rebecca, Bravo, Guillermo, Broomandkhoshbacht, Nasreen, Callan, Kimberly, Candilio, Francesca, Demetz, Lea, Duffett Carlson, Kellie Sara, Eccles, Laurie, Freilich, Suzanne, George, Richard J., Lawson, Ann Marie, Mandl, Kirsten, Marzaioli, Fabio, McCool, Weston C., Oppenheimer, Jonas, Özdoğan, Kadir T., Schattke, Constanze, Schmidt, Ryan, Stewardson, Kristin, Terrasi, Filippo, Zalzala, Fatma, Arredondo Antúnez, Carlos, Vento Canosa, Ercilio, Colten, Roger, Cucina, Andrea, Genchi, Francesco, Kraan, Claudia, La Pastina, Francesco, Lucci, Michaela, Veloz Maggiolo, Marcio, Marcheco-Teruel, Beatriz, Tavarez Maria, Clenis, Martínez, Christian, París, Ingeborg, Pateman, Michael, Simms, Tanya M., García Sivoli, Carlos, Vilar, Miguel, Kennett, Douglas J., Keegan, William F., Coppa, Alfredo, Lipson, Mark, Pinhasi, Ron, Reich, David, National Geographic Society, Ministero degli Affari Esteri e della Cooperazione Internazionale, National Science Foundation (US), National Institute of General Medical Sciences (US), Paul G. Allen Family Foundation, John Templeton Foundation, Howard Hughes Medical Institute, Fernandes, Daniel, Sirak, Kendra, Ringbauer, Harald, Sedig, Jakob, Rohland, Nadin, Cheronet, Olivia, Mah, Matthew, Mallick, Swapan, Olalde, Iñigo, Culleton, Brendan J., Adamski, Nicole, Bernardos, Rebecca, Bravo, Guillermo, Broomandkhoshbacht, Nasreen, Callan, Kimberly, Candilio, Francesca, Demetz, Lea, Duffett Carlson, Kellie Sara, Eccles, Laurie, Freilich, Suzanne, George, Richard J., Lawson, Ann Marie, Mandl, Kirsten, Marzaioli, Fabio, McCool, Weston C., Oppenheimer, Jonas, Özdoğan, Kadir T., Schattke, Constanze, Schmidt, Ryan, Stewardson, Kristin, Terrasi, Filippo, Zalzala, Fatma, Arredondo Antúnez, Carlos, Vento Canosa, Ercilio, Colten, Roger, Cucina, Andrea, Genchi, Francesco, Kraan, Claudia, La Pastina, Francesco, Lucci, Michaela, Veloz Maggiolo, Marcio, Marcheco-Teruel, Beatriz, Tavarez Maria, Clenis, Martínez, Christian, París, Ingeborg, Pateman, Michael, Simms, Tanya M., García Sivoli, Carlos, Vilar, Miguel, Kennett, Douglas J., Keegan, William F., Coppa, Alfredo, Lipson, Mark, Pinhasi, Ron, and Reich, David
- Abstract
Humans settled the Caribbean about 6,000 years ago, and ceramic use and intensified agriculture mark a shift from the Archaic to the Ceramic Age at around 2,500 years ago1,2,3. Here we report genome-wide data from 174 ancient individuals from The Bahamas, Haiti and the Dominican Republic (collectively, Hispaniola), Puerto Rico, Curaçao and Venezuela, which we co-analysed with 89 previously published ancient individuals. Stone-tool-using Caribbean people, who first entered the Caribbean during the Archaic Age, derive from a deeply divergent population that is closest to Central and northern South American individuals; contrary to previous work4, we find no support for ancestry contributed by a population related to North American individuals. Archaic-related lineages were >98% replaced by a genetically homogeneous ceramic-using population related to speakers of languages in the Arawak family from northeast South America; these people moved through the Lesser Antilles and into the Greater Antilles at least 1,700 years ago, introducing ancestry that is still present. Ancient Caribbean people avoided close kin unions despite limited mate pools that reflect small effective population sizes, which we estimate to be a minimum of 500–1,500 and a maximum of 1,530–8,150 individuals on the combined islands of Puerto Rico and Hispaniola in the dozens of generations before the individuals who we analysed lived. Census sizes are unlikely to be more than tenfold larger than effective population sizes, so previous pan-Caribbean estimates of hundreds of thousands of people are too large5,6. Confirming a small and interconnected Ceramic Age population7, we detect 19 pairs of cross-island cousins, close relatives buried around 75 km apart in Hispaniola and low genetic differentiation across islands. Genetic continuity across transitions in pottery styles reveals that cultural changes during the Ceramic Age were not driven by migration of genetically differentiated groups from the main
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- 2021
15. Author Correction: The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean
- Author
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Irish Research Council, National Science Foundation (US), Fundación la Caixa, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Ministero dell'Istruzione, dell'Università e della Ricerca, Howard Hughes Medical Institute, National Institutes of Health (US), John Templeton Foundation, Fernandes, Daniel, Mittnik, Alissa, Olalde, Iñigo, Lazaridis, Iosif, Cheronet, Olivia, Rohland, Nadin, Mallick, Swapan, Bernardos, Rebecca, Broomandkhoshbacht, Nasreen, Carlsson, Jens, Culleton, Brendan J., Ferry, Matthew, Gamarra, Beatriz, Lari, Martina, Mah, Matthew, Michel, Megan, Modi, Alessandra, Novak, Mario, Oppenheimer, Jonas, Sirak, Kendra, Stewardson, Kristin, Mandl, Kirsten, Schattke, Constanze, Özdoğan, Kadir T., Lucci, Michaela, Gasperetti, Gabriella, Candilio, Francesca, Salis, Gianfranca, Vai, Stefania, Camarós, Edgard, Calò, Carla, Catalano, Giulio, Cueto, Marian, Forgia, Vincenza, Lozano, Marina, Marini, Elisabetta, Micheletti, Margherita, Miccichè, Roberto M., Palombo, María Rita, Ramis, Damià, Schimmenti, Vittoria, Sureda, Pau, Teira, Luis, Teschler-Nicola, Maria, Kennett, Douglas J., Lalueza-Fox, Carles, Patterson, Nick, Sineo, Luca, Coppa, Alfredo, Caramelli, David, Pinhasi, Ron, Reich, David, Irish Research Council, National Science Foundation (US), Fundación la Caixa, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Ministero dell'Istruzione, dell'Università e della Ricerca, Howard Hughes Medical Institute, National Institutes of Health (US), John Templeton Foundation, Fernandes, Daniel, Mittnik, Alissa, Olalde, Iñigo, Lazaridis, Iosif, Cheronet, Olivia, Rohland, Nadin, Mallick, Swapan, Bernardos, Rebecca, Broomandkhoshbacht, Nasreen, Carlsson, Jens, Culleton, Brendan J., Ferry, Matthew, Gamarra, Beatriz, Lari, Martina, Mah, Matthew, Michel, Megan, Modi, Alessandra, Novak, Mario, Oppenheimer, Jonas, Sirak, Kendra, Stewardson, Kristin, Mandl, Kirsten, Schattke, Constanze, Özdoğan, Kadir T., Lucci, Michaela, Gasperetti, Gabriella, Candilio, Francesca, Salis, Gianfranca, Vai, Stefania, Camarós, Edgard, Calò, Carla, Catalano, Giulio, Cueto, Marian, Forgia, Vincenza, Lozano, Marina, Marini, Elisabetta, Micheletti, Margherita, Miccichè, Roberto M., Palombo, María Rita, Ramis, Damià, Schimmenti, Vittoria, Sureda, Pau, Teira, Luis, Teschler-Nicola, Maria, Kennett, Douglas J., Lalueza-Fox, Carles, Patterson, Nick, Sineo, Luca, Coppa, Alfredo, Caramelli, David, Pinhasi, Ron, and Reich, David
- Abstract
Correction to: Nature Ecology & Evolution https://doi.org/10.1038/s41559-020-1102-0, published online 24 February 2020.
- Published
- 2020
16. The spread of steppe and Iranian-related ancestry in the islands of the western Mediterranean
- Author
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Irish Research Council, National Science Foundation (US), Fundación la Caixa, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Ministero dell'Istruzione, dell'Università e della Ricerca, Howard Hughes Medical Institute, National Institutes of Health (US), John Templeton Foundation, Fernandes, Daniel, Mittnik, Alissa, Olalde, Iñigo, Lazaridis, Iosif, Cheronet, Olivia, Rohland, Nadin, Mallick, Swapan, Bernardos, Rebecca, Broomandkhoshbacht, Nasreen, Carlsson, Jens, Culleton, Brendan J., Ferry, Matthew, Gamarra, Beatriz, Lari, Martina, Mah, Matthew, Michel, Megan, Modi, Alessandra, Novak, Mario, Oppenheimer, Jonas, Sirak, Kendra, Stewardson, Kristin, Mandl, Kirsten, Schattke, Constanze, Özdoğan, Kadir T., Lucci, Michaela, Gasperetti, Gabriella, Candilio, Francesca, Salis, Gianfranca, Vai, Stefania, Camarós, Edgard, Calò, Carla, Catalano, Giulio, Cueto, Marian, Forgia, Vincenza, Lozano, Marina, Marini, Elisabetta, Micheletti, Margherita, Miccichè, Roberto M., Palombo, María Rita, Ramis, Damià, Schimmenti, Vittoria, Sureda, Pau, Teira, Luis, Teschler-Nicola, Maria, Kennett, Douglas J., Lalueza-Fox, Carles, Patterson, Nick, Sineo, Luca, Coppa, Alfredo, Caramelli, David, Pinhasi, Ron, Reich, David, Irish Research Council, National Science Foundation (US), Fundación la Caixa, Ministerio de Economía y Competitividad (España), Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Ministero dell'Istruzione, dell'Università e della Ricerca, Howard Hughes Medical Institute, National Institutes of Health (US), John Templeton Foundation, Fernandes, Daniel, Mittnik, Alissa, Olalde, Iñigo, Lazaridis, Iosif, Cheronet, Olivia, Rohland, Nadin, Mallick, Swapan, Bernardos, Rebecca, Broomandkhoshbacht, Nasreen, Carlsson, Jens, Culleton, Brendan J., Ferry, Matthew, Gamarra, Beatriz, Lari, Martina, Mah, Matthew, Michel, Megan, Modi, Alessandra, Novak, Mario, Oppenheimer, Jonas, Sirak, Kendra, Stewardson, Kristin, Mandl, Kirsten, Schattke, Constanze, Özdoğan, Kadir T., Lucci, Michaela, Gasperetti, Gabriella, Candilio, Francesca, Salis, Gianfranca, Vai, Stefania, Camarós, Edgard, Calò, Carla, Catalano, Giulio, Cueto, Marian, Forgia, Vincenza, Lozano, Marina, Marini, Elisabetta, Micheletti, Margherita, Miccichè, Roberto M., Palombo, María Rita, Ramis, Damià, Schimmenti, Vittoria, Sureda, Pau, Teira, Luis, Teschler-Nicola, Maria, Kennett, Douglas J., Lalueza-Fox, Carles, Patterson, Nick, Sineo, Luca, Coppa, Alfredo, Caramelli, David, Pinhasi, Ron, and Reich, David
- Abstract
Steppe-pastoralist-related ancestry reached Central Europe by at least 2500 bc, whereas Iranian farmer-related ancestry was present in Aegean Europe by at least 1900 bc. However, the spread of these ancestries into the western Mediterranean, where they have contributed to many populations that live today, remains poorly understood. Here, we generated genome-wide ancient-DNA data from the Balearic Islands, Sicily and Sardinia, increasing the number of individuals with reported data from 5 to 66. The oldest individual from the Balearic Islands (~2400 bc) carried ancestry from steppe pastoralists that probably derived from west-to-east migration from Iberia, although two later Balearic individuals had less ancestry from steppe pastoralists. In Sicily, steppe pastoralist ancestry arrived by ~2200 bc, in part from Iberia; Iranian-related ancestry arrived by the mid-second millennium bc, contemporary to its previously documented spread to the Aegean; and there was large-scale population replacement after the Bronze Age. In Sardinia, nearly all ancestry derived from the island’s early farmers until the first millennium bc, with the exception of an outlier from the third millennium bc, who had primarily North African ancestry and who—along with an approximately contemporary Iberian—documents widespread Africa-to-Europe gene flow in the Chalcolithic. Major immigration into Sardinia began in the first millennium bc and, at present, no more than 56–62% of Sardinian ancestry is from its first farmers. This value is lower than previous estimates, highlighting that Sardinia, similar to every other region in Europe, has been a stage for major movement and mixtures of people.
- Published
- 2020
17. Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment
- Author
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Gelabert, Pere, Sawyer, Susanna, Bergström, Anders, Margaryan, Ashot, Collin, Thomas C, Meshveliani, Tengiz, Belfer-Cohen, Anna, Lordkipanidze, David, Jakeli, Nino, Matskevich, Zinovi, Bar-Oz, Guy, Fernandes, Daniel M, Cheronet, Olivia, Özdoğan, Kadir T, Oberreiter, Victoria, Feeney, Robin NM, Stahlschmidt, Mareike C, Skoglund, Pontus, and Pinhasi, Ron
- Subjects
Ecology,Evolution & Ethology ,Infectious Disease ,15. Life on land ,Genetics & Genomics - Abstract
Cave sediments have been shown to preserve ancient DNA but so far have not yielded the genome-scale information of skeletal remains. We retrieved and analyzed human and mammalian nuclear and mitochondrial environmental "shotgun" genomes from a single 25,000-year-old Upper Paleolithic sediment sample from Satsurblia cave, western Georgia:first, a human environmental genome with substantial basal Eurasian ancestry, which was an ancestral component of the majority of post-Ice Age people in the Near East, North Africa, and parts of Europe; second, a wolf environmental genome that is basal to extant Eurasian wolves and dogs and represents a previously unknown, likely extinct, Caucasian lineage; and third, a European bison environmental genome that is basal to present-day populations, suggesting that population structure has been substantially reshaped since the Last Glacial Maximum. Our results provide new insights into the Late Pleistocene genetic histories of these three species and demonstrate that direct shotgun sequencing of sediment DNA, without target enrichment methods, can yield genome-wide data informative of ancestry and phylogenetic relationships.
18. Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment
- Author
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Gelabert, Pere, Sawyer, Susanna, Bergström, Anders, Margaryan, Ashot, Collin, Thomas C, Meshveliani, Tengiz, Belfer-Cohen, Anna, Lordkipanidze, David, Jakeli, Nino, Matskevich, Zinovi, Bar-Oz, Guy, Fernandes, Daniel M, Cheronet, Olivia, Özdoğan, Kadir T, Oberreiter, Victoria, Feeney, Robin NM, Stahlschmidt, Mareike C, Skoglund, Pontus, and Pinhasi, Ron
- Subjects
Ecology,Evolution & Ethology ,Infectious Disease ,15. Life on land ,Genetics & Genomics - Abstract
Cave sediments have been shown to preserve ancient DNA but so far have not yielded the genome-scale information of skeletal remains. We retrieved and analyzed human and mammalian nuclear and mitochondrial environmental "shotgun" genomes from a single 25,000-year-old Upper Paleolithic sediment sample from Satsurblia cave, western Georgia:first, a human environmental genome with substantial basal Eurasian ancestry, which was an ancestral component of the majority of post-Ice Age people in the Near East, North Africa, and parts of Europe; second, a wolf environmental genome that is basal to extant Eurasian wolves and dogs and represents a previously unknown, likely extinct, Caucasian lineage; and third, a European bison environmental genome that is basal to present-day populations, suggesting that population structure has been substantially reshaped since the Last Glacial Maximum. Our results provide new insights into the Late Pleistocene genetic histories of these three species and demonstrate that direct shotgun sequencing of sediment DNA, without target enrichment methods, can yield genome-wide data informative of ancestry and phylogenetic relationships.
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