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Objective: Passive integrated transponder (PIT) telemetry is commonly used to monitor fish movements and behavior. To reduce inferential bias in PIT telemetry studies, it is important to quantify the effects of tagging procedures on fish survival. To this end, we conducted a controlled experiment to test the hypothesis that intraperitoneal injection of 23‐mm PIT tags would have no effect on the survival of adult Blueback Herring Alosa aestivalis. Methods: We compared mortality rates of tagged and untagged Blueback Herring (n = 174; size range 202–277 cm) that were retained in experimental tanks for 14 days. Result: We observed no difference in the probability of survival between tagged (50% survival) and untagged (42%) groups. Conclusion: These results suggest that intraperitoneal tag injection is a safe and effective method of PIT tagging adult Blueback Herring and supports the use of this technique in field telemetry studies. Impact statementWhile PIT telemetry is frequently used to monitor fish movements and behavior, few studies have evaluated the effect of tagging procedures on fish survival. By comparing the survival of control and treatment groups retained in experimental tanks for 14 days, this study found that intraperitoneal injection of 23‐mm PIT tags had a negligible effect on the survival of Blueback Herring. [ABSTRACT FROM AUTHOR]

Fragmentation of stream networks from anthropogenic structures such as road culverts can affect the health of a catchment by negatively affecting the ecosystem's biota, their movements, abundance, and species richness. We present a framework using publicly available LiDAR and orthophotography to locate and identify road crossings, i.e. the most prolific of barriers in forested landscapes, and evaluate fragmentation and passability at the landscape scale. Coupling the LiDAR stream network and private road network in the 3,223 km2 study area, we identified 1,052 stream crossings of which, 32% were culverts and 12% of the total stream network was potentially inaccessible due to these culverts. We correctly identified the type of stream-road crossings at >90% of any stream order and at 100% at Orders >2. The 10 culverts restricting the most stream kilometers, restricted >34% of the potential stream habitats for four species of fish, a result that provides the resource management with a first assessment for effective improvement of connectivity across this landscape. With this framework, managers equipped with appropriate imagery can create a stream crossing database with minimal funding, create an inventory of instream barriers, and prioritize removals at a landscape-scale, thus providing an effective assessment and decision-making tool for their habitat restoration efforts. [ABSTRACT FROM AUTHOR]

Thermal refuges are becoming increasingly influential for dictating the population status and spatial distribution of cold-water stenotherm salmonids in the mid- to southern extent of their range. The global climate is predicted to continue to warm, and therefore, the overall thermal suitability of freshwater habitats for stream salmonids is predicted to decline in concert. However, stream and river thermal heterogeneity will offer considerable resiliency for these populations. Thermal refuges are formed by many physical processes; common natural refuges include cold tributary plumes, groundwater springs, alcoves, and hyporheic upwellings. However, many anthropogenically formed refuges (such as stratified reservoirs or cold-water tailrace outflows) also exist in hydropower-regulated rivers. The significance of these refuges to stream salmonids depends on their size and temperature differential, but also other habitat characteristics such as their depth, flow velocity, Froude number, and many biotic factors within the refuges. Modern technologies such as drone-mounted thermal infrared cameras and other remote sensing techniques allow for the efficient identification of such refuges, and inexpensive options include the identification of refuges during ice cover using orthophotographs. Behavioural thermoregulation, i.e., salmonids aggregating in cold-water refuges, can be either facultative or obligate and the timing of these events is governed by life stage, species, and population-specific physiologically regulated cumulative thresholds that are inherently related to the recent thermal history, or hysteresis, of each individual. Salmonids appear to have an excellent spatial cognition for locating and relocating cold-water refuges, and their spatial distribution is largely affected by the availability of the cold-water refuges during the warm-water period in many thermally stressed rivers. Gregarious behaviour is the norm for salmonid fishes within the thermal refuges; however, the size/microhabitat hierarchy appears to dictate the within-refuge distribution at the micro-scale. There continues to be a great impetus for protecting—and in carefully determined cases creating—cold-water refuges in the future. A thorough understanding of what a "goldilocks" refuge is for various salmonids and their different life stages will be imperative as cold-water restoration is gaining popularity. Finally, disentangling the roles of the climate-induced and landscape activity-induced warming potential of fluvial freshwater will be important to ensure continued environmentally responsible landscape activities in future waterscapes. [ABSTRACT FROM AUTHOR]

Behavioural thermoregulation is a survival strategy that occurs in response to an exceedance of thermal stress‐inducing thresholds. When salmonids experience exceedance of these thresholds, they seek regions of colder water, known as thermal refuges. During an extreme temperature event of summer 2021 (main stem ~31.5°C) a large aggregation of Atlantic salmon (Salmo salar—all age classes) and brook trout (Salvelinus fontinalis—>20 cm) was observed on the Little Southwest Miramichi River in New Brunswick, Canada. Using a drone‐mounted thermal infrared (TIR) sensor, fine‐scale TIR imagery of the occupied refuge was acquired. Polarized glasses were worn by an onshore observer to make visual observations. Constructing maps from these data we examined the spatial distribution of fish, and the corresponding temperature of the areas they occupied. Salmonids were found to be distributed by age class and species, with the distribution driven by the mosaic of temperatures in the refuge. Young of the year (YOY), 1+, 2+ and adult Atlantic salmon occupied areas with average temperatures ~30.1, 28.8, 25.7 and 21.9°C, respectively; whilst mature brook trout occupied areas ~21.8°C. Noteworthy is the observation of thermally aggregating young of the year Atlantic salmon, and the range in temperatures they occupied (~8°C). One isolated, shallow, cold water patch (~22°C) exclusively held YOY Atlantic salmon. Our findings highlight the importance of several different thermal characteristics of thermal refuges and their link to salmonid occupancy and can aid the design of ecologically meaningful thermal refuge augmentation/restoration projects. [ABSTRACT FROM AUTHOR]

The role of temperature on biological activities and the correspondent exponential relationship with temperature has been known for over a century. However, lacking to date is knowledge relating to (a) the recovery of ectotherms subjected to extreme temperatures in the wild, and (b) the effects repeated extreme temperatures have on the temperatures that induce behavioural thermoregulation (aggregations). We examined these questions by testing the hypothesis that thermal thresholds which initiate aggregations in juvenile Atlantic salmon (AS) (Salmo salar) are not static, but are temporally dynamic across a summer and follow a hysteresis loop. To test our hypothesis, we deployed custom-made underwater camera (UWC) systems in known AS thermal refuges to observe the timing of aggregation events in a natural system and used these data to develop and test models that predict the temperatures that induce thermal aggregations. Consistent with our hypothesis our UWC observations revealed a range of aggregation onset temperatures (AOT) ranging from 24.2°C to 27.1°C, thus confirming our hypothesis that AOTs are dynamic across summer. Our models suggest it take ~ 11 days of non-thermally taxing temperatures for the AOT to rebound in the study river. Conversely, we found that as the frequency of events increased, the AOT declined, from 27.1°C to 24.2°C. Integrating both model components led to more robust model performance. Further, when these models were tested against an independent data set from the same river, the results remained robust. Our findings illustrate the complexity underlying behavioural thermoregulation in AS—a complexity that most likely extends to other salmonids. The frequency of extreme heat events is predicted to increase, and this has the capacity to decrease AOT thresholds in AS, ultimately reducing their resilience to extreme temperature events. [ABSTRACT FROM AUTHOR]

Thermal mapping of surface waters and the land surface via UAVs offers exciting opportunities in many scientific disciplines; however, unresolved issues persist related to accuracy and drift of uncooled microbolometric thermal infrared (TIR) sensors. Curiously, most commercially available UAV-based TIR sensors are black, which will theoretically facilitate heating of the uncooled TIR sensor via absorbed solar radiation. Accordingly, we tested the hypothesis that modifying the surface absorptivity of uncooled TIR sensors can reduce thermal drift by limiting absorptance and associated microbolometer heating. We used two identical uncooled TIR sensors (DJI Zenmuse XT2) but retrofitted one with polished aluminum foil to alter the surface absorptivity and compared the temperature measurements from each sensor to the accurate measurements from instream temperature loggers. In addition, because TIR sensors are passive and measure longwave infrared radiation emitted from the environment, we tested the hypotheses that overcast conditions would reduce solar irradiance, and therefore induce thermal drift, and that increases in air temperature would induce thermal drift. The former is in contrast with the conceptual model of others who have proposed that flying in overcast conditions would increase sensor accuracy. We found the foil-shielded sensor yielded temperatures that were on average 2.2 °C more accurate than those of the matte black sensor (p < 0.0001). Further, we found positive correlations between light intensity (a proxy for incoming irradiance) and increased sensor accuracy for both sensors. Interestingly, light intensity explained 73% of the accuracy variability for the black sensor, but only 40% of the variability in accuracy deviations for the foil-shielded sensor. Unsurprisingly, an increase in air temperature led to a decrease in accuracy for both sensors, where air temperature explained 14% of the variability in accuracy for the black sensor and 31% of the accuracy variability for the foil-shielded sensor. We propose that the discrepancy between the amount of variability explained by light intensity and air temperature is due to changes in the heat energy budget arising from changes in the surface absorptivity. Additionally, we suggest fine-scale changes in river-bed reflectance led to errors in UAV thermal measurements. We conclude with a suite of guidelines for increasing the accuracy of uncooled UAV-based thermal mapping. [ABSTRACT FROM AUTHOR]

In recent decades, there has been an increase in conservation and restoration projects targeting Atlantic salmon (Salmo salar – AS), as populations in eastern Canada decline. Missing however, is an understanding of thermo‐hydraulic habitat use by adult AS during summer, and thus the actual benefits of altering in‐river physical structures. Here, we illustrated how optical and thermal infrared (TIR) imagery acquired from a UAV can be used in concert with in‐situ depth and velocity data to map adult AS and develop models of thermo‐hydraulic habitats in the Miramichi River, New Brunswick. We found during normal temperature conditions (<19°C) boulder proximity, depth, velocity, and Froude number, a non‐dimensional hydraulic metric, were key parameters that characterized adult AS habitat. However, during behavioural thermoregulation events (>19°C), proximity to the cool thermal plume and Froude number were critical controls on habitat use. We also observed AS forming a distinct geometric formation during behavioural thermoregulation events, and term this formation a "thermal‐peloton"; in reference to competitive cycling in which groups of cyclists pack together. The primary function of the peloton is undoubtedly to reduce thermally induced stressed; however, we conceptualize that the geometry of the peloton attenuates hydraulic‐drag, and reduces the energetic expenditure of individuals practicing behavioural thermoregulation. These data provide a blue print for Atlantic salmon restoration work. The use of UAV‐based sensors has the potential to initiate a paradigm shift for river sciences. [ABSTRACT FROM AUTHOR]

The advent of remotely-sensed high-resolution imagery has led to the development of methods to map river bathymetry. In this study, we utilized high-resolution imagery to map river depth and quantify hydraulic habitats at the catchment scale (>1000 km2) during low flows. Using 0.3-m airborne multi-spectral imagery (resampled to 0.5 m), we mapped contiguous river depth (124 km) within a well-established Atlantic Salmon (Salmo salar) and Brook Trout (Salvelinus fontinalis) river – The Little Southwest Miramichi, New Brunswick. We built image-derived depth maps with and without field data calibration. The model without field calibration data (flow resistance equation‐based imaging of river depths) accurately described river depths (R2 = 72.7; RMSE = 0.167 m; n = 762); however, it overestimated shallow depths. The field-calibrated model removed shallow depth errors (R2 = 76.4; RMSE = 0.155 m; n = 762). We mapped velocity using a relationship between river geometry and discharge, and coalesced the field-calibrated depth and velocity maps to create Froude and Reynolds number maps. Finally, we performed an unsupervised classification model to delineate the hydraulically relevant habitat units for salmonids. This approach provides an unprecedented view of catchment-scale hydraulic habitats that will advance both hydrological process research and river resources management. [ABSTRACT FROM AUTHOR]