Search

Cette synthèse présente l’influence des caractéristiques des animaux et de leurs conditions d’élevage sur les qualités des viandes et des chairs des principales espèces animales d’élevage (porc, bovins, ovins, poulets, poissons). Les dimensions intrinsèques (composition des carcasses, qualités sensorielle, nutritionnelle et technologique) et extrinsèques (interactions entre productions animales et environnement, bien-être des animaux, origine des produits, authenticité des pratiques de production…) de la qualité des produits sont considérées. Dans toutes les espèces, le type génétique et la conduite alimentaire sont les principaux déterminants de la composition des carcasses. La nature de l’alimentation des animaux constitue le principal levier pour moduler la qualité nutritionnelle, toutefois le niveau d’enrichissement des viandes et chairs en acides gras, minéraux ou vitamines favorables à la santé humaine varie selon les espèces. Pour une espèce donnée, les caractéristiques des animaux, leurs conditions d’élevage et d’abattage interagissent pour déterminer les propriétés (teneurs en lipides, glycogène, myoglobine…) et le métabolisme péri et post-mortem des muscles, et consécutivement la qualité sensorielle des viandes ou chairs et de leurs produits. A l’inverse, la qualité technologique, composante importante dans les filières porc, poulet et poisson résulte essentiellement du type génétique et des conditions d’abattage des animaux et de transformation des viandes. Dans les différentes filières animales, les qualités extrinsèques des produits font partie intégrante de certaines démarches collectives ou privées et sont garanties aux consommateurs au travers des signes officiels de qualité. Elles visent à améliorer les interactions favorables entre les productions animales et l’environnement et/ou le bien-être des animaux, garantir l’origine des produits et/ou valoriser l’authenticité des méthodes de production et de transformation. Différents exemples sont développés pour illustrer la prise en compte par les acteurs des filières de cette demande croissante des consommateurs et plus largement des citoyens envers leur alimentation., This review describes the influences of the characteristics of animals and their rearing conditions on the quality of meat and flesh in the main livestock species (pig, cattle, sheep, poultry, fish). Both the intrinsic (carcass composition and sensory, nutritional and technological qualities) and extrinsic (interactions between animal production and the environment, animal welfare, origin of products, authenticity of production practices…) dimensions of quality of meat and flesh products are considered. In all animal species, the genotype and feeding practices are the main factors determining carcass composition. Feed composition is the main factor modulating nutritional quality, even though the enrichment level of meat or flesh with fatty acids, minerals or vitamins favorable for human health depends on the species considered. Within species, interactions between the characteristics of animals and their rearing and slaughtering conditions determine the properties (intramuscular fat, glycogen, myoglobin contents…) and peri and postmortem metabolism of muscles and, consequently, the sensory quality of meat or flesh and their products. Conversely, the technological quality of meat, which is important especially for pig, poultry and fish mainly results from the animal genotype and the slaughtering and processing techniques. In all meat animal chains, some productions are differentiated on claims on extrinsic qualities of products and are guaranteed to consumers by official quality schemes. They aim at improving the positive interactions between animal production and environment and/or animal welfare, or guaranteeing products origin or authenticity of production and processing methods. Some examples are described to underline the awareness of meat chain actors about the increasing demand from consumers and more generally citizens towards their diet.

International audience

International audience

Myostatin, a member of the transforming growth factor-β superfamily, is a potent negative regulator of skeletal muscle growth and is conserved in many species, from rodents to humans. Myostatin inactivation can induce skeletal muscle hypertrophy, while its overexpression or systemic administration causes muscle atrophy. As it represents a potential target for stimulating muscle growth and/or preventing muscle wasting, myostatin regulation and functions in the control of muscle mass have been extensively studied. A wealth of data strongly suggests that alterations in skeletal muscle mass are associated with dysregulation in myostatin expression. Moreover, myostatin plays a central role in integrating/mediating anabolic and catabolic responses. Myostatin negatively regulates the activity of the Akt pathway, which promotes protein synthesis, and increases the activity of the ubiquitin-proteasome system to induce atrophy. Several new studies have brought new information on how myostatin may affect both ribosomal biogenesis and translation efficiency of specific mRNA subclasses. In addition, although myostatin has been identified as a modulator of the major catabolic pathways, including the ubiquitin-proteasome and the autophagy-lysosome systems, the underlying mechanisms are only partially understood. The goal of this review is to highlight outstanding questions about myostatin-mediated regulation of the anabolic and catabolic signaling pathways in skeletal muscle. Particular emphasis has been placed on (1) the cross-regulation between myostatin, the growth-promoting pathways and the proteolytic systems; (2) how myostatin inhibition leads to muscle hypertrophy; and (3) the regulation of translation by myostatin.

Dans un contexte de demande croissante en protéines animales, l’élevage de précision et la sélection animale doivent viser à accroître la compétitivité des systèmes de production et à réduire leur impact environnemental. Les animaux doivent être plus efficaces pour transformer leur ration (réduire l’ingéré tout en maintenant une production stable), en acceptant des ressources alimentaires variées (protéines ou fibres) et en minimisant leurs rejets (totaux ou leurs composantes N et P, GES). Toutefois, l’efficacité alimentaire est un phénotype complexe qui doit être phénotypé finement pour comprendre les processus biologiques sous-jacents avant d’identifier les leviers d’action pour l’améliorer (efficacité digestive vs métabolique ; efficacité énergétique vs protéique). Ce phénotypage doit être réalisé en conditions variées tant sur le plan du génotype, du niveau alimentaire que de la composition de la ration (teneur en fibres, en acides aminés). Il s’agit aussi d’envisager une approche prédictive de l’ingéré et de l’efficacité alimentaire basée sur des paramètres peu coûteux et faciles à mesurer (croissance, bio-marqueurs…) dans le cadre d’un élevage de précision ou de programmes de sélection génétique, car le phénotypage à large échelle de l’ingéré reste coûteux et parfois difficile à mettre en oeuvre. Pour évaluer l’efficience globale des systèmes de productions animales, il s’agit de considérer les réponses des animaux pour des génotypes et des régimes alimentaires contrastés en termes d’efficacité alimentaire et de rejets en quantité et en qualité (GES, N, P), mais aussi de robustesse des animaux (comportement alimentaire, activité générale, santé)., In a context of an increasing demand for animal proteins, precision farming and animal breeding must be goal-oriented to improve production competitiveness and to reduce environmental impact. Animals have to be more efficient in transforming their diet (reducing their feed intake while maintaining production performance), accepting various feeds (protein and fibers) and reducing their wastes (total, N, P, GHG…). However, feed efficiency is a complex phenotype that needs to be deeply phenotyped. This will allow unravelling the biological processes to identify ways to improve feed efficiency (digestive versus metabolic efficiency; energetic versus protein efficiency) according to the genotype, the feed level and the diet composition (fibre content, AA content). Predictive biology of feed intake and feed efficiency is also needed using cost-effective and easy to record traits (growth, biomarkers…) for precision farming and for selective breeding, because large-scale phenotyping for feed intake remains costly. To assess the efficiency of livestock production systems, there is a need to reconsider animal responses according to contrasted genotypes and feeds not only for feed efficiency and wastes in quantity and quality (GHG, N, P), but also for robustness of animals (feeding behavior, general activity, health).

International audience

Chantier qualité GA; Supplies of marine fish oils are limited, and continued growth in aquaculture production dictates that lipid substitutes in fish diets must be used without compromising fish health and product quality. In this study, the total substitution of a fish meal and fish oil by a blend of vegetable meals (corn, soybean, wheat and lupin) and linseed oil in the diet of European sea bass (Dicentrachus labrax) was investigated. Two groups of European sea bass were fed with fish diet (FD) or vegetable diet (VD) for 9 months. VD, totally deprived of eicosapentaenoate (EPA; 20:5n-3) and docosahexaenoate (DHA; 22:6n-3), revealed a nutritional deficiency and affected growth performance. Whilst VD induced a significant increase in fatty acid desaturase 2 (FADS2) and sterol binding regulatory element-binding protein 1 (SREBP-1) mRNA levels, the desaturation rate of [1-(14)C]18:3n-3 into [1-(14)C]18:4n-3, analysed in microsomal preparations using HPLC method, did not show an upregulation of FADS2 activities in liver and intestine of fish fed VD. Moreover Western-blot analysis did not revealed any significant difference of FADS2 protein amount between the two dietary groups. These data demonstrate that sea bass exhibits a desaturase (FADS2) activity whatever their diet, but a post-transcriptional regulation of fads2 RNA prevents an increase of enzyme in fish fed a HUFA-free diet. This led to a lower fish growth and poor muscle HUFA content. (C) 2010 Elsevier Inc. All rights reserved.

International audience; Aquaculture is facing a strategic challenge to improve feed suitability and support the global increase in fish production. Improvements in diet formulation for sustainable nutritional strategies have focused to date on the partial substitution of marine resources by plant resources but will now include other alternative feed-stuffs. Growth trials and body composition data provide valuable indicators of fish nutritional status, while omics technologies may contribute to a better understanding of fish nutrition and help to demonstrate how feed and nutrients act in fish metabolism. Metabolomic approaches give an insight into fish metabolism through a non-targeted analysis of metabolites in tissues or biofluids that involve multiple factors affecting fish, such as nutrition. In this review, we highlight the outcomes of publications in metabolomics applied to fish nutrition. We explain the concept of metabolomics and discuss specific technical considerations related to sample type, sampling and sample preparation. We show how metabolomic studies help to elucidate the impact of nutrition on fish fillet composition and fish metabolism. Finally, we describe the potential applications of metabolomic approaches for the non-invasive monitoring of fish nutritional status.

International audience; The role of phenotypic plasticity in the acclimation and adaptive potential of an organism to global change is not currently accounted for in prediction models. The high plasticity of marine fishes is mainly attributed to their early stages, during which morphological, structural and behavioural 'functions are particularly sensitive to environmental constraints. This developmental plasticity can determine later physiological performances and fitness, and may further affect population dynamics and ecosystem functioning. This review asks the essential question of what role early stages play in the ability of fish to later cope with the effects of global change, considering three key environmental factors (temperature, hypoxia and acidification). After having identified the carry-over effects of early exposure reported in the literature, we propose areas that we believe warrant the most urgent attention for further research to better understand the role of developmental plasticity in the responses of marine organisms to global change.

International audience; We studied the effects of supplementing a plant-ingredient based rainbow trout broodstock diet with different forms of selenium (Se) on reproductive performance, parental Se transfer and antioxidant metabolism in their progeny before first-feeding. Three groups of rainbow trout were fed a diet either without selenium supplementation (NC, basal Se level: 0.3 ppm) or supplemented with 0.3 ppm Se either in the form of sodium selenite (SS) or as hydroxy-selenomethionine (SO, dietary Se level: 0.7 ppm) over a 6-month period prior to spawning. In Se-supplemented groups, the total number of females spawning was significantly higher compared to the negative control group and the females fed SO began to spawn earlier compared to females fed SS or NC. Total Se concentrations were significantly higher in female muscle of SO group. Higher Se concentrations in the oocytes of both Se-supplemented groups confirmed a maternal transfer of Se, while total Se concentrations in milt samples were not significantly different between dietary groups. There was no effect on glutathione peroxidase (GPX) or other antioxidant enzyme activity in the liver of female or male broodstock, whereas in the swim-up fry, GPX activity was significantly higher in both Se-supplemented treatments with the highest activity in the SO group. Se-supplementation enhanced the expression of hepatic SelPa in broodstock males and females along with MsrB1, GPx1a, GPx4a2, CAT, Gclc, Keap1 and MsrB2 in male liver. In swim-up fry, only organic Se-supplementation led to a higher gene expression for SelPa, GPX1a, GPX1b2, CAT and MsrB2. An improvement of the oxidative status in whole-body of swim-up fry could not be confirmed in this study as the GSH/GSSG was even lower in swim-up fry of Se-supplemented groups, whereas the 8-isoprostane levels were lower in the SS group and no effect on protein carbonyl levels could be detected. Organic Se-supplementation led to a significant increase in the α-tocopherol and vitamin C levels in the progeny. These results show that dietary Se in broodstock nutrition influences spawning occurrence and along with the parental transfer, several traits in the progeny are affected.

Extracellular vesicles (EVs) are increasingly envisioned as the next generation of biological pro-regenerative nanotherapeutic agents, as has already been demonstrated for heart, kidney, liver, and brain tissues; lung injury repair; and skin regeneration. Herein, we explore another potential EV therapeutic application, fistula healing, together with a local minimally invasive delivery strategy. Allogenic extracellular vesicles (EVs) from adipose tissue-derived stromal cells (ASCs) are administered in a porcine fistula model through a thermoresponsive Pluronic F-127 (PF-127) gel, injected locally at 4 °C and gelling at body temperature to retain EVs in the entire fistula tract. Complete fistula healing is reported to be 100% for the gel plus EVs group, 67% for the gel group, and 0% for the control, supporting the therapeutic use of Pluronic F-127 gel alone or combined with EVs. However, only the combination of gel and EVs results in a statistically significant (i) reduction of fibrosis, (ii) decline of inflammatory response, (iii) decrease in the density of myofibroblasts, and (iv) increase of angiogenesis. Overall, we demonstrate that ASC-EV delivery into a PF-127 gel represents a successful local minimally invasive strategy to induce a therapeutic effect in a swine fistula model. Our study presents prospects for EV administration strategies and for the management of post-operative fistulas.

International audience; Marine plastic pollution is a major environmental issue. Given their ubiquitous nature and small dimensions, ingestion of microplastic (MP) and nanoplastic (NP) particles and their subsequent impact on marine life are a growing concern worldwide. Transfers along the trophic chain, including possible translocation, for which the hazards are less understood, are also a major preoccupation. Effects of MP ingestion have been studied on animals through laboratory exposure, showing impacts on feeding activity, reserve depletion and inflammatory responses, with consequences for fitness, notably reproduction. However, most experimental studies have used doses of manufactured virgin microspheres that may not be environmentally realistic. As for most ecotoxicological issues, the environmental relevance of laboratory exposure experiments has recently been debated. Here we review constraints and priorities for conducting experimental exposures of marine wildlife to microplastics based on the literature, feedback from peer reviewers and knowledge gained from our experience. Priorities are suggested taking into account the complexity of microplastics in terms of (i) aggregation status, surface properties and interactions with organic and inorganic materials, (ii) diversity of encountered particles types and concentrations, (iii) particle bioavailability and distribution in experimental tanks to achieve reproducibility and repeatability in estimating effects, and (iv) strict experimental procedures to verify the existence of genuine translocation. Relevant integrative approaches encompass a wide spectrum of methods from -omics to ecophysiological approaches, includingmodeling, are discussed to provide novel insights on the impacts of MP/NP on marine ecosystems from a long-term perspective. Knowledge obtained in this way would inform stakeholders in such a way as to help them mitigate impacts of the micro- and nano-plastic legacy.

International audience

International audience; The effects of replacing fishmeal and fish oil with a plant-based diet were studied in juvenile (10g) and ongrowing (250-350g) rainbow trout from first-feeding. Feed-related differences in the intestinal and hepatic transcriptome were examined in juveniles after 7 months of feeding at 7ÊC. Based on microarray results obtained for juveniles, the expression of selected genes related to lipid, cholesterol and energy metabolisms, was assessed by RTqPCR in ongrowing trout after 6 additional months of feeding at 17ÊC. Plasma glucose and cholesterol, lipid content and fatty acid profile of whole body were analyzed at both stages. After 7 months at 7ÊC, all juveniles reached the same body weight (10g), while at 13 months ongrowing fish fed the totally plant-based diet exhibited lower body weight (234 vs 330- 337g). Body lipid content was higher in juveniles fed the totally plant-based diet (13.2 vs 9.4±9.9%), and plasma cholesterol was about 2-times lower in trout fed the plant-based diets at both stages. Fatty acid profile mirrored that of the respective diet, with low proportions of long-chain n-3 polyunsaturated fatty acids in fish fed plant-based diets. Genes involved in protein catabolism, carbohydrate metabolism and trafficking were down-regulated in the intestines of juveniles fed the plant-based diets. This was not true for ongrowing fish. Genes involved in lipid and cholesterol metabolisms were up-regulated in the livers of fish fed plant-based diets for both stages. In this study, feeding trout a totally plant-based diet from first-feeding affect a relatively low proportion of metabolism-related genes. In the longer term, when fish were reared at a higher temperature, only some of these changes were maintained (i.e. up-regulation of lipid/cholesterol metabolism). Although the plant-based diets tested in this study had no major deficiencies, small adjustments in the feed-formula are needed to further optimize growth performance while sparing marine resources.

Complément numérique; National audience

International audience; The aim of the present study was to assess the impact of an acute handling stress on hepatic oxidative status of European sea bass (Dicentrarchus labrax) juveniles fed diets differing in lipid so urce and carbohydrate content. For that purpose, four diets were formulated with fish oil (FO) and vegetable oils (VO) as lipid source and with 20 or 0% gelatinized starch as carbohydrate source. Triplicate groups of fish with 74 g were fed each diet during 13 weeks and then subjected to an acute handling stress. Stress exposure decreased hematocrit (Ht) and hemoglobin (Hb) levels. Independent of dietary treatment, stress exposure increased hepatic lipid peroxidation (LPO). Stressed fish exhibited lower glucose 6-phosphate dehydrogenase (G6PD), catalase (CAT), and superoxide dismutase (SOD) activities, independent of previous nutritional history. In the VO groups, stress exposure increased glutathione peroxidase (GPX) activity. Diet composition had no effect on Ht and Hb levels. In contrast, dietary carbohydrate decreased hepatic LPO and CAT activity and increased glutathione reductase (GR) and G6PD activities. Dietary lipids had no effect on LPO. Fish fed the VO diets exhibited higher G6PD activity than fish fed the FO diets. In conclusion, dietary carbohydrates contributed to the reduction of oxidative stress in fish. However, under the imposed handling stress conditions, liver enzymatic antioxidant mechanisms were not enhanced, which may explain the overall increased oxidative stress.

International audience; For most marine aquaculture species, one of the main bottlenecks is the stable production of high quality juveniles. The high and unpredictable mortality in the first weeks after hatching of marine fish larvae remains a challenging problem that needs to be solved. The severity of the problem differs between species, but cannot be considered adequately solved for any species. Both scientific evidence and experience in hatcheries for a variety of fish, shrimp and shellfish species are accumulating as support for the hypothesis that detrimental fish–microbe interactions are the cause of these problems. Host–microbe interactions in reared fish are still poorly understood, except for a few pathogens, and empirical data of the quality required to test this hypothesis, are lacking. This article provides an overview on the current knowledge of the microbial environment of fish larvae, including methodological aspects to characterize the microbial community (both using culture-dependent and culture-independent methods). Further, the current knowledge of the immunology of fish larvae is reviewed, including recent advances in the understanding of toll-like receptors, inflammatory cytokines, mast cells and piscidins, and the ontogeny of the adaptive immune system. Finally, we provide an overview of the state of the art with respect to steering of microbial communities associated with fish larvae – both steering of community composition and of its activity (e.g. by quorum sensing interference)

The present study aimed to evaluate whether the total or high substitution of fsh meal (FM) and fsh oil (FO) by sustainable plant raw materials (plant meal and oils) in long-term feeding for rainbow trout, gilthead sea bream, and common carp can result in spoilage alterations during ice storage. Tese three species were fed throughout their whole rearing cycle with plant-based diets and compared to counterparts that received FM/FO-based diets or commercial-like diets. Sensory QIM schemes adopted for these species and ATP breakdown products (K-value and components) were used to evaluate the freshness. Sensory acceptability of 14, 15, and 12 days was found for rainbow trout, gilthead sea bream, and common carp, respectively. Tis corresponded to K-values of approximately 80%, 35%, and 65% for rainbow trout, gilthead sea bream, and common carp, respectively. No major efect of dietary history on postmortem shelf life was shown for gilthead sea bream and common carp; neither sensory-perceived nor chemical freshness showed diet-related diferences. Rainbow trout fed with the plant-based diet exhibited slightly worse sensory freshness than fsh fed with FM/FO-based diets, at the end of shelf life. Tese fndings imply that FM and FO can be successfully substituted without major impacts on shelf life of fsh, This study was funded by the European Union (ARRAINA, FP7-KBBE-2011-5-288925, Advanced Research Initiatives for Nutrition and Aquaculture).

International audience; For the last ten years, quantitative isotope ratio monitoring C-13 NMR (irm-C-13 NMR) has been successfully tested and proven as an efficient tool for the determination of position-specific C-13/C-12 ratios. Several applications in different domains have shown the interest in this technique. In the context of origin assignment, the possibility to track the distribution network of illicit drugs or cutting agents is of prime importance. However irm-C-13 NMR still suffers from a relative lack of sensitivity limiting its dissemination among control laboratories. Improvements were proposed to reduce experiment time by using the INEPT sequence (''Insensitive Nuclei Enhanced by Polarization Transfer'') based on polarization transfer from highly sensitive H-1 to less sensitive( 13)C. Several applications based on the use of the one bond scalar coupling between H-1 and C-13 ((1)J(CH)) have shown the potential of this methodology in terms of short experimental duration. However, the isotopic information given by quaternary carbons was lost. The aim of this study is to extend this approach by using short- and long-range coupling ((1)J(CH), (2)J(CH), and (3)J(CH)) in order to have access to all C-13/C-12 position-specific ratios, i.e., acquisition of the full spectrum (FS-INEPT). It is shown that this innovative tool provides both sensitivity gain-thanks to the long-range polarization transfer-and appropriate repeatability. The relative isotopic profiles allowed the classification of two cutting agents, caffeine and paracetamol (acetaminophen), according to their origin, as it was previously observed with ``classical'' irm-C-13 NMR but consuming much less sample and/or reducing the experimental time.

International audience; The aim of the study was to analyse the effects of different dietary methionine (Met) concentrations on the mechanisms of fish muscle growth (hyperplasia and hypertrophy) by using cellular and molecular approaches. Three plant-based diets differing by their Met level (MD, Met-deficient; MC, Met-control, corresponding to established Met requirement; MH, Met-high) were fed to rainbow trout juveniles for 12 weeks. Met deficiency led to a reduced somatic growth right from the first 3 weeks of feeding onwards, while feeding the MH-diet led to an increased body growth in the 6 last weeks of feeding. The protein gain of the juveniles increased with dietary Met content. The protein retention efficiency of the MD-fed juveniles was half that of the MC- and MH-fed juveniles which were statistically similar. The changes induced by MD- and MH-feeding at muscle molecular and cellular levels were different. Compared to control, dietary Met deficiency altered the expression of myogenic, muscle growth- and metabolism-related genes by increasing Myf5, MyoD1, Mrf4, Mef2a, βact, CathD, GSTπ and TNFα expressions and decreasing Col1α1 and IGF1 expressions, whereas a high level of dietary Met decreased Pax7a2, Mef2c, βact, CathD, GDH2 and NF-κB expressions. The Met-control fed fish were discrimated according to HGF, Pax7a1 and Pax7a2 expressions. Dietary Met level thus acted on the expression of genes regulating specific transition points of myogenesis, and affected the expression of muscle structural genes and growth factors involved in satellite cell activation and muscle growth. Molecular results suggested that MD-diet favours satellite cell return to quiescence, while MC-diet favours satellite cell activation and MH-diet myogenic differentiation. At cellular level, the muscle total cross-sectional area of the juveniles fed the MD-diet was 28% lower than that of the juveniles fed the MC-diet despite a similar total number of white muscle fibres, and the number of white muscle fibres with a large diameter was lower in MD-fed fish than in MC-fed ones. The muscle total cross-sectional area of the juveniles fed the MH-diet was 32% higher than that of the juveniles fed the MC-diet, their total number of white muscle fibres 25% higher, and their number of white muscle fibres with a large diameter similar. Increasing dietary methionine above established requirement thus promotes white muscle hyperplasia and muscle growth in rainbow trout juveniles, while methionine deficiency dysregulates the expression of myogenic and muscle growth-related genes and impairs white fibre hypertrophy. Statement of relevance: Determining the effects of dietary methionine levels on muscle growth mechanisms will help develop low fish meal feeds.

Seven isoproteic and isolipidic semi-purified diets were formulated to assess specific nutrient deficiencies in sulphur amino acids (SAA), n-3 long-chain PUFA (n-3 LC-PUFA), phospholipids (PL), P, minerals (Min) and vitamins (Vit). The control diet (CTRL) contained these essential nutrients in adequate amounts. Each diet was allocated to triplicate groups of juvenile gilthead sea bream fed to satiety over an 11-week feeding trial period. Weight gain of n-3 LC-PUFA, P-Vit and PL-Min-SAA groups was 50, 60-75 and 80-85 % of the CTRL group, respectively. Fat retention was decreased by all nutrient deficiencies except by the Min diet. Strong effects on N retention were found in n-3 LC-PUFA and P fish. Combined anaemia and increased blood respiratory burst were observed in n-3 LC-PUFA fish. Hypoproteinaemia was found in SAA, n-3 LC-PUFA, PL and Vit fish. Derangements of lipid metabolism were also a common disorder, but the lipodystrophic phenotype of P fish was different from that of other groups. Changes in plasma levels of electrolytes (Ca, phosphate), metabolites (creatinine, choline) and enzyme activities (alkaline phosphatase) were related to specific nutrient deficiencies in PL, P, Min or Vit fish, whereas changes in circulating levels of growth hormone and insulin-like growth factor I primarily reflected the intensity of the nutritional stressor. Histopathological scoring of the liver and intestine segments showed specific nutrient-mediated changes in lipid cell vacuolisation, inflammation of intestinal submucosa, as well as the distribution and number of intestinal goblet and rodlet cells. These results contribute to define the normal range of variation for selected biometric, biochemical, haematological and histochemical markers. © 2015 The Authors., This study was funded by the European Union (ARRAINA, FP7-KBBE-2011-5-288925, Advanced Research Initiatives for Nutrition and Aquaculture) projects. Additional funding was obtained from the Spanish MINECO (MI2-Fish, AGL2013-48560) and from Generalitat Valenciana (PROMETEO FASE II-2014/085). G. F. B.-L. was a recipient of a Spanish PhD fellowship from the Diputación Provincial de Castellón.

Background/Aims: Carnivores exhibit poor utilization of dietary carbohydrates and glucose intolerant phenotypes, yet it remains unclear what are the causal factors and underlying mechanisms. We aimed to evaluate excessive amino acids (AAs)-induced effects on insulin signaling, fatty acid biosynthesis and glucose metabolism in rainbow trout and determine the potential involvement of mTORC1 and p38 MAPK pathway. Methods: We stimulated trout primary hepatocytes with different AA levels and employed acute administration of rapamycin to inhibit mTORC1 activation. Results: Increased AA levels enhanced the phosphorylation of ribosomal protein S6 kinase (S6K1), S6, and insulin receptor substrate 1 (IRS-1) on Ser302 but suppressed Akt and p38 phosphorylation; up-regulated the expression of genes related to gluconeogenesis and fatty acid biosynthesis. mTORC1 inhibition not only inhibited the phosphorylation of mTORC1 downstream targets, but also blunted IRS-1 Ser302 phosphorylation and restored excessive AAs-suppressed Akt phosphorylation. Rapamycin also inhibited fatty acid biosynthetic and gluconeogenic gene expression. Conclusion: High levels of AAs up-regulate hepatic fatty acid biosynthetic gene expression through an mTORC1-dependent manner, while attenuate insulin-mediated repression of gluconeogenesis through elevating IRS-1 Ser302 phosphorylation, which in turn impairs Akt activation and thereby weakening insulin action. We propose that p38 MAPK probably also involves in these AAs-induced metabolic changes.

The extraordinary muscle growth potential of teleost fish, particular those of the Salmoninae clade, elicits questions about how the relatively highly conserved transcription factors of the myogenic program are regulated. In addition, the pseudotetraploid nature of the salmonid genome adds another layer of regulatory complexity, and this must be reconciled with epigenetic data to better understand how these fish achieve lifelong muscle growth. To this end, we identified three paralogous pax7 genes (pax7a1, pax7a2, and pax7b) in the rainbow trout genome. During in vitro myogenesis, pax7a1 transcripts remain stable, while pax7a2 and pax7b mRNAs increase in abundance, similarly to myogenin mRNAs and in contrast to the expression pattern of the mammalian ortholog. In addition, we profiled the distribution of repressive H3K27me3 and H3K9me3 and permissive H3K4me3 marks during in vitro myogenesis across these loci, finding that pax7a2 expression was associated with decreased H3K27 trimethylation, while pax7b expression was correlated with decreased H3K9me3 and −K27me3. Altogether, these data link the highly unique differential expression of pax7 paralogs with epigenetic histone modifications in a vertebrate species displaying growth divergent from that of mammals and highlight an important divergence in the regulatory mechanisms of pax7 expression among vertebrates. The system described here provides a more comprehensive picture of the combinatorial control mechanisms orchestrating skeletal muscle growth in a salmonid, leading to a better understanding of myogenesis in this species and across Vertebrata more generally.

International audience

International audience

We studied the effect of changes in dietary methionine (Met) supply in broodstock and first-feeding rainbow trout fry (offspring). Three plant-based diets differing in Met level (deficient, adequate or in excess of the established requirement) were fed to the broodstock (male and female) for 6 months prior to spawning (diets BD, BA and BE, respectively). The offspring from the parental Met-groups was then challenged in turn with the different Met fry-diets (FD, FA and FE, respectively) for 3 weeks from first-feeding. At spawning, females fed diet BD had significantly higher plasma total and LDL-cholesterol and slightly lower plasma triacylglycerol. Diet BD reduced female (but not male) growth, weight of spawn and egg size, but had no effect on relative fecundity. The free amino acid profile of oocytes was modified, with levels of Met and Cys correlating positively with the Met-levels of broodstock diets. SAM and SAH levels in oocytes followed the same pattern, as opposed to SAM/SAH ratio. At the swim-up stage, no significant effect of parental diet on fry weight was noted, whereas survival was the highest in fry from BE-broodstock. The subsequent 21-day fry feeding with different Met levels highly affected the daily growth index with a significant interaction between the parental-diet and fry-diet effects. The expression of a number of genes regulating sulfur amino acid metabolism was modified either directly by the dietary Met supply in both broodstock liver and in whole fry (e.g. BHMT1, GR, GST pi, MsrA1) or indirectly by the parental Met intakes as seen in the swim-up fry (e.g. BHMT1, MTR, GST pi, MsrA1). Importantly, long-lasting parental effects linked to broodstock Met-intake were seen in the fry, 21-days after first-feeding and irrespective of the fry diet (CTH, MsrA1, MsrB2, SOD2). Similarly, parental effects were noted on the gene expression of both NPY and POMC feeding peptides in fry prior to exogenous feeding which persisted for POMC in the 21-day fry. Parental effects were also demonstrated on the key myogenic gene Myog, on fMHC and GDH in swim-up fry, which persisted for GDH in 21-day fry. In summary, our results demonstrate that dietary Met levels of rainbow trout broodstock affect various traits in the offspring, some of which persisted during the first weeks of exogenous feeding. Further studies need to evaluate the long-term persistence of the parental effects over time and to elucidate the mechanisms, whether epigenetic or not. Statement of relevance: Determining the multiple effects of dietary methionine levels on reproductive, growth performance and metabolism in offspring will help improve formulations of low fish meal feeds for rainbow trout at sensitive life cycle stages. (C) 2016 Elsevier B.V. All rights reserved. EU [288925] F.C.T., Portugal - Fundo Social Europeu (POCH) and National Funds [SFRH/BPD/108389/2015] info:eu-repo/semantics/publishedVersion

Bases de la nutrition et formulation en aquaculture

International audience

Gut microbiota is increasingly regarded as an integral component of the host, due to important roles in the modulation of the immune system, the proliferation of the intestinal epithelium and the regulation of the dietary energy intake. Understanding the factors that influence the composition of these microbial communities is essential to health management, and the application to aquatic animals still requires basic investigation. In this study, we compared the bacterial communities harboured in the intestines and in the rearing water of grass carp (Ctenopharyngodon idellus), crucian carp (Carassius cuvieri), and bighead carp (Hypophthalmichthys nobilis), by using 454-pyrosequencing with barcoded primers targeting the V4 to V5 regions of the bacterial 16S rRNA gene. The specimens of the three species were cohabiting in the same pond. Between 6,218 and 10,220 effective sequences were read from each sample, resulting in a total of 110,398 sequences for 13 samples from gut microbiota and pond water. In general, the microbial communities of the three carps were dominated by Fusobacteria, Firmicutes, Proteobacteria and Bacteroidetes, but the abundance of each phylum was significantly different between species. At the genus level, the overwhelming group was Cetobacterium (97.29 ± 0.46 %) in crucian carp, while its abundance averaged c. 40 and 60 % of the sequences read in the other two species. There was higher microbial diversity in the gut of filter-feeding bighead carp than the gut of the two other species, with grazing feeding habits. The composition of intestine microbiota of grass carp and crucian carp shared higher similarity when compared with bighead carp. The principal coordinates analysis (PCoA) with the weighted UniFrac distance and the heatmap analysis suggested that gut microbiota was not a simple reflection of the microbial community in the local habitat but resulted from species-specific selective pressures, possibly dependent on behavioural, immune and metabolic characteristics.

Post-prandial changes in plasma mineral levels and utilisation of minerals in rainbow trout fed complete plant ingredient based diets with or without supplemental di-calcium phosphate (DCP) were studied over an 8 week period. Three diets were used: diet M was FM and fish oil (FO) based diet (control); diets VP0 and VP + (V diets) were completely based on plant derived protein and lipid sources. One of the V diets (VP +) was supplemented with DCP to supply 5 g kg− 1 dry matter available phosphorus (P); while the other diet (VP0) was not supplemented with DCP. Change in dietary protein source significantly affected the post-prandial pattern in plasma levels of P (p < 0.05), Ca (p < 0.007), Mg (p < 0.001) and Zn (p < 0.03). Area under the curve analysis indicated that compared to VP0, DCP supplementation in VP + improved plasma levels of P (p < 0.01) and K (p < 0.05); Cu (p < 0.002), Se (p < 0.009) and Zn (p < 0.001) levels were reduced while Ca, Mg and Fe levels were unaffected (p > 0.05). Based on measurement of apparent digestibility, growth and whole body composition analyses, mineral balances were established showing that supplementation of DCP led to significant increase in whole body P concentration and P retention in VP +, comparable to fish fed diet M with significantly (p < 0.05) reduced faecal and non-faecal P losses. There was improved post-absorptive retention (as % of available intake) of Ca (p < 0.05), Mg (p < 0.05) and K (p < 0.05) in VP + compared to VP0. Utilisation of Cu (p < 0.05) and Zn (p < 0.01) was negatively affected. DCP supplementation to complete plant ingredient based diet increased the post-prandial plasma levels, whole body concentration and utilisation of macro-minerals (P, Ca, Mg and K) whereas that of micro-minerals especially Zn and Cu were negatively affected

International audience

International audience

International audience; The most widely used method for isotope analysis at natural abundance is isotope ratio monitoring by Mass Spectrometry (irm-MS) which provides bulk isotopic composition in H-2, C-13,N-15, O-18 or S-34. However, in the 1980s, the direct access to Site-specific Natural Isotope Fractionation by Nuclear Magnetic Resonance (SNIF-NMR (TM)) was immediately recognized as a powerful technique to authenticate the origin of natural or synthetic products. The initial - and still most popular - application consisted in detecting the chaptalization of wines by irm-H-2 NMR. The approach has been extended to a wide range ofmethodologies over the last decade, paving the way to a wide range of applications, not only in the field of authentication but also to study metabolism. In particular, the emerging irm-C-13 NMR approach delivers direct access to position-specific C-13 isotope content at natural abundance. After highlighting the application scope of irm-NMR (H-2 and C-13), this article describes the major improvements which made possible to reach the required accuracy of 1 parts per thousand (0.1%) in irm-C-13 NMR. The last part of the manuscript summarizes the different steps to perform isotope analysis as a function of the sample properties (concentration, peak overlap) and the kind of targeted isotopic information (authentication, affiliation). Copyright (C) 2016 John Wiley & Sons, Ltd.

International audience

In zebrafish brains, populations of continuously proliferating cells are present during an entire life span. Under normal conditions, stem cells give rise to rapidly proliferating progenitors that quickly exit the cell cycle and differentiate. Hence fish are favorable models to study what regulates postembryonic neurogenesis. The aim of this study was to determine if optic tectum (OT) cell proliferation is halted during nutritional deprivation (ND) and whether or not it can be restored with refeeding. We examined the effect of ND on the proliferation of Neuroepithelial/Ependymal Progenitor cell (NeEPC) and transitory-amplifying progenitors (TAPs). Following ND, no PCNA immunostaining was found in OT of starved fish, while positive cell populations of PCNA positive progenitors are found at its periphery in control fish. This indicated that active proliferation stopped. To label retaining progenitor cells, BrdU was applied and a chase-period was accompanied by ND. Positive NeEPCs were detected in the external tectum marginal zone of starved fish suggesting that these progenitors are relatively immune to ND. Moreover in the internal tectum marginal zone labeled retaining cells were observed leaving the possibility that some arrested TAPs were present to readily restart proliferation when nutrition was returned. Our results suggest that neurogenesis was maintained during ND and that a normal proliferative situation was recovered after refeeding. We point to the mTOR pathway as a necessary pathway in progenitors to regulate their mitosis activity. Thus, this study highlights mechanisms involved in neural stem and progenitor cell homeostatic maintenance in an adverse situation. © 2016 Wiley Periodicals, Inc. Develop Neurobiol 77: 26-38, 2017.

A sustainable development of aquaculture requires reducing fish meal (FM) and fish oil (FO) use in aquafeeds, by replacing it with eco-friendly ingredients such as vegetable protein and oil sources. Vegetable ingredients are usually rich in carbohydrates (CH) and, contrarily to FO, are abundant in 18-carbon polyunsaturated fatty acids (C18 PUFA) but lack n-3 long-chain polyunsaturated fatty acids (LC-PUFA). These nutritional drawbacks may limit the use of vegetable ingredients in aquafeeds, especially for carnivorous marine fish species, which have specific requirements of n-3 LC-PUFA, as they are not able to efficiently elongate C18 PUFA to n-3 LC-PUFA, and are metabolically adapted to diets almost devoid of CH. For an increased incorporation of vegetable ingredients in aquafeeds at the expense of FM and FO, more knowledge is needed on the effects of dietary vegetable oil (VO) and CH per se, and the possible interactive effects between dietary VO and CH on lipid and CH related metabolic pathways and on fish oxidative status. For this purpose, using as models two important Mediterranean aquaculture species - European seabass (Dicentrarchus labrax) and gilthead sea bream (Sparus aurata) - the experimental work applied in thesis relied on an integrative approach combining classical zootechnical parameters, plasma metabolites, activity of key enzymes and expression of selected genes involved in key metabolic pathways. In Chapters 2 and 4, diets with FO or a blend of VO as main lipid sources, and with 0 or 20% gelatinized starch as CH source were used to evaluate processes involved in nutrient digestion, absorption and transport in European sea bass and gilthead sea bream juveniles. Moreover, in European sea bass the effects of dietary lipid source in intestinal digestive enzyme activities and in liver and intestine histomorphology were also evaluated (Chapter 3). Afterwards, the effects of the same diets on growth performance, tissue fatty acid (FA) composition, glucose and lipid metabolism (Chapters 5 and 6), and on fish oxidative status (Chapters 7 and 8) were also evaluated for both species. Replacement of FO by VO in the diets slightly but significantly reduced apparent lipid digestibility in both species. However, this decreased lipid digestibility did not induce marked changes in lipid serum profile, liver and intestine transcriptional mechanisms involved in lipid transport and absorption. In European sea bass, no alterations in digestive enzyme activities and in liver and intestine histomorphology were also noticed. In gilthead sea beam, dietary CH inclusion did not affect lipid digestibility but modulated the transcriptional mechanisms involved in lipid absorption and transport at intestinal level. As expected, replacement of FO by VO and inclusion of dietary CH led to small effects on growth performance and feed efficiency in both species. In gilthead sea bream, interactions between dietary CH and lipid source were observed in liver lipids and in muscle glycogen deposition. However, lipid and glycogen deposition in muscle and liver was mainly positively related to the dietary CH content in the two target species. Muscle and liver FA profiles markedly reflected the FA composition of dietary lipids, although dietary starch increased tissue saturated FA content. Dietary CH, but not dietary VO, enhanced liver lipogenic activity in both species and promoted a moderated liver transcriptional regulation of the glycolytic (only up-regulation of glucokinase gene expression) and the gluconeogenic (only down-regulation of phosphoenolpyruvate carboxykinase gene expression) pathways. No increase in liver and muscle n-3 LC-PUFA content were observed in both species, but enhanced hepatic transcript levels of FADS2 - the key enzyme involved LC-PUFA biosynthesis – was observed with dietary VO at 6 hours after feeding in European sea bass and at 18 hours after feeding in gilthead sea bream. In gilthead sea bream fed the dietary CH-rich- diets, enhanced hepatic transcript levels of FADS2 was also observed at 18 hours after feeding. In European sea bass, but not in gilthead sea bream, dietary CH inclusion enhanced plasma cholesterolemia and, at molecular level, the liver cholesterol biosynthesis capacity (HMGCR, the rate-limiting enzyme of cholesteroliosynthesis). In European sea bass dietary VO increased transcript levels of key enzymes involved in cholesterol biosynthesis (HMGCR and CYP51A1) liver but did not affect plasma and liver cholesterol levels; whereas in gilthead sea bream no adaptive response in cholesterol biosynthesis pathway was observed at a molecular level, although it was observed a decrease of plasma cholesterol but not of hepatic cholesterol content. In both species CH-rich diets promoted a reduction of lipid oxidative damage in the liver but not in the intestine. The mechanism by which dietary CH exerted their protective role against oxidative stress in the liver seems to be linked to an increased activity of glucose-6-phosphate dehydrogenase to generate reducing equivalents for the regeneration of reduced glutathione. In gilthead sea bream, dietary VO improved liver and intestine oxidative status, while in European sea bass such effect was only observed at intestinal level. The positive antioxidant effect of dietary VO may be related to the lower degree of unsaturation of the dietary FA and to an enhanced activity of glutathione reductase and glutathione peroxidase. Overall, in this study no substantial interactions between dietary CH and lipid source were observed. However, we provided for the first time evidence of a transcriptional induction of FADS2, a key enzyme of LC-PUFA biosynthesis pathway, by dietary CH, in addition to VO, in gilthead sea bream. This may open new perspectives for the use of nutritional strategies to induce LC-PUFA biosynthesis in marine fish species. We also highlighted important aspects on the regulation of cholesterol biosynthesis pathway and fish oxidative status that are important in the context of VO and CH rich aquafeeds. In addition, species-specific differences in the regulation of cholesterol and LC-PUFA biosynthesis pathways in fish fed CH and VO were also highlighted, and require further elucidation in future studies

The whole-body transcriptome of trout alevins was characterised to investigate the effects of long-term feeding of rainbow trout broodstock females a diet free of fishmeal and fish oil on the metabolic capacities of progeny. Effects were studied before first feeding and after 3 weeks of feeding diets containing different proportions of marine and plant ingredients. Feeding alevins plant-based diets resulted in lower fish body weight, irrespective of maternal nutritional history. No differences in whole-body lipids were found between treatments, and the tissue fatty acid profile strongly reflected that of the respective broodstock or first-feeding diets. We showed that the maternal diet history did not significantly affect expressions of any genes before the first feeding. Interestingly, we found an effect of maternal nutritional history on gene expression in alevins after 3 weeks of feeding. The major differences in the transcriptome of alevins from plant-based diet-fed females compared with those from commercial-fed females were as follows: (i) down-regulation of genes involved in muscle growth/contraction and (ii) up-regulation of genes involved in carbohydrate and energy metabolism related to the delay in growth/development observed with plant-based diets. Our findings also showed an effect of the first-feeding diets, irrespective of maternal nutritional history. Specifically, the introduction of plant ingredients resulted in the up-regulation of genes involved in amino acid/protein and cholesterol metabolism and in differences in the expressions of genes related to carbohydrate metabolism. Information gained through this study opens up avenues for further reduction of marine ingredients in trout diets, including the whole rearing cycle.

Crédit Incitatif 2011. Champ thématique : Ressources, Production; Rôle de la méthionine dans la régulation épigénétique de la croissance musculaire chez la truite arc-en-ciel. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016)

Crédit Incitatif 2013. Champs thématiques : Ressources, Production; Impacts de facteurs alimentaires sur le fonctionnement du tractus digestif chez la truite arc-en-ciel : indicateurs moléculaires et biochimiques. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016)

Crédit Incitatif 2012. Champ thématique : Production; Essai de manipulation de la voie NOS par l'alimentation précoce chez la truite : conséquences sur l'expression de gènes myogéniques. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016)

Crédit Incitatif 2014. Champ thématique : Ressources, Adaptation; Première approche épigénétique en nutrition des poissons : étude de la régulation épigénétique de la néogluconéogénèse hépatique chez la truite arc-en-ciel (Oncorhynchus mykiss) - conséquences d'un régime hyperglucidique. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016)

Crédit Incitatif 2013. Champ thématique : RessourcesCrédit Incitatif 2013. Champ thématique : Ressources; Rôle de l'autophagie hépatique dans l'utilisation du glucose chez la truite. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016)

Crédit Incitatif 2014. Champ thématique : Adaptation; Influence de la teneur en lipides alimentaires sur les mécanismes de "lipid sensing" au niveau central (hypothalamus) et périphérique (foie) chez la truite arc-en-ciel en lien avec la régulation de la prise alimentaire. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016)

In the last years, the increase in aquaculture production has forced a change in fish feed composition, with increasing substitution of fish meal and fish oil by more available plant sources. In this context, the present PhD work aimed at analyzing the effects of different levels of concomitant dietary replacement of fish meal and fish oil by plant ingredients during the whole life cycle of rainbow trout (from first feeding to reproduction). This work showed for the first time that rainbow trout was able to survive, grow and produce viable offsprings, when fed a totally plant-based diet throughout the whole life cycle. Such dietary replacement resulted in drastic changes in tissues fatty acid profile of broodstock females. However, we found that trout was capable to synthetize n-3 long chain- polyunsaturated fatty acids (LC-PUFA) from dietary precursors and to transfer large amounts of these fatty acids in ova, so that an efficient reproduction can occur. We also studied the potential carry over generation effects of feeding broodstock a totally plantbased diet on progeny and their response to different diets at early stages, using molecular approaches, including the study of the whole body transcriptome. Considering the effects on progeny, the present study confirmed the capability of trout to survive and grow on a plant-based diet, but with slight differences in terms of weight. While no effects of maternal dietary background were observed before first feeding, except slightly lower body weight (-13%), significant effects on the transcriptome of whole body alevins appeared after 3 weeks of feeding. These effects of maternal nutritional history were mainly related to muscle growth/contraction and carbohydrate and energy metabolism. Irrespective of the maternal origin of progeny, first feeding diets containing plant ingredients resulted in up-regulation of genes involved in AA/protein and cholesterol metabolism, as well as in changes in the expression of genes involved in carbohydrate metabolism. Finally, the effects of long-term feeding trout plant-based diets were also studied in juveniles (10g) and ongrowing fish (250-350g), mainly focusing on intestine and liver gene expression. The long term trial in juveniles highlighted subtle effects on both intestinal and hepatic gene expression (transcriptome), mainly related to LC-PUFA and cholesterol biosynthetic pathways,which were enhanced in fish fed the plant based diets. This transcriptional pattern was maintained in ongrowing fish. Genes involved in protein catabolism, carbohydrate metabolism and trafficking were also affected by plant-based diets in juveniles, but these results were not fully confirmed in ongrowing fish. Overall, the results of the present thesis allowed extending the use of diets with high replacement rates of fish meal and fish oil to the whole life cycle of fish, including broodstock and early stages. Adjustments of the feed-formula are still needed to further optimize reproductive and growth performance.; Au cours des dernières années, l'augmentation de la production aquacole a nécessité un changement dans la composition des aliments pour poissons, pour remplacer la farine et l’huile de poisson par des sources végétales plus disponibles. Dans ce contexte, le travail de ma thèse avait pour but d'analyser les effets d’une substitution totale et concomitante de la farine et l'huile de poisson par des ingrédients végétaux dans les aliments distribués pendant tout le cycle de vie de la truite arc-en-ciel, de la première alimentation jusqu’à la reproduction. Ce travail a montré pour la première fois que la truite arc-en-ciel peut survivre, se développer et avoir une descendance viable, lorsqu’elle est nourrie tout au long de son cycle de vie avec un régime 100% végétal. Un tel remplacement alimentaire a entraîné des changements radicaux dans le profil en acides gras des tissus des femelles. Cependant, nous avons constaté que la truite était capable de synthétiser des acides gras polyinsaturés à longue chaîne n-3 (AGPI-LC n-3) à partir de précurseurs présents dans l'aliment, et de stocker dans les ovules une partie de ces acides gras néosynthétisés dans le foie , permettant ainsi une reproduction efficace. Nous avons également étudié les possibles effets trans-générationnels d’une alimentation 100% végétale des géniteurs, sur la survie et la croissance de la descendance et sur sa réponse à différents régimes aux stades précoces en nous appuyant sur des analyses du transcriptome des alevins entiers. Aucun effet significatif de l’alimentation maternelle avec des régimes à base de végétaux n’a été observé sur les descendants avant leur première alimentation, à l'exception d'un poids corporel légèrement inférieur (-13%) à celui des descendants de femelles nourries avec un aliment contenant des farines et huiles de poisson. En revanche, des effets significatifs de l'alimentation maternelle sur le transcriptome des alevins sont apparus après 3 semaines d'alimentation. L'histoire nutritionnelle de la mère a affecté principalement des gènes impliqués dans la croissance/contraction musculaire et dans les métabolismes énergétique et glucidique. Quelle que soit l'origine maternelle, l’alimentation des alevins avec des aliments contenant des ingrédients végétaux conduit à une régulation positive des gènes impliqués dans le métabolisme des AA/protéines et le métabolisme du cholestérol, ainsi qu’à des changements dans l'expression des gènes impliqués dans le métabolisme des glucides. Enfin, les effets à long-terme de régimes à base de matières premières végétales chez la truite arc-en-ciel ont également été étudiés chez les juvéniles (10g) et les poissons « en croissance » (250-350g), en se focalisant principalement sur l’expression des gènes dans l’intestin et le foie. Cette étude à long-terme a mis en évidence chez les juvéniles des effets subtils sur des gènes intestinaux et hépatiques (transcriptome), avec principalement une augmentation de l’expression des gènes impliqués dans les voies de synthèse des AGPI-LC et du cholestérol chez les poissons nourris avec des régimes à base de plantes. Ces changements d’expression ont été maintenus chez les poissons « en croissance ». L'expression de gènes impliqués dans le catabolisme des protéines, le métabolisme des glucides et dans le transport intracellulaire a également été modifiée par les régimes à base de plantes chez les juvéniles, mais ces résultats ne sont pas entièrement confirmés chez les poissons « en croissance ». L'ensemble des résultats de cette thèse fournissent des informations originales sur l'utilisation de régimes alimentaires avec des taux de remplacement élevés de farine et d'huile de poisson pendant l'ensemble du cycle de vie des poissons, y compris les reproducteurs et les stades précoces, car la majorité des études précédentes avaient concerné la phase de grossissement. Des ajustements de la formule des aliments à base de végétaux sont encore nécessaires pour continuer à optimiser les performances de reproduction et surtout la croissance des poissons d’élevage.

Hyperplasia and hypertrophy are the two mechanisms by which muscle develops and grows. We study these two mechanisms, during the early development of white muscle in Sparus aurata, by means of histology and the expression of structural and regulatory genes. A clear stage of stratified hyperplasia was identified early in the development of gilthead sea bream but ceased by 35 dph when hypertrophy took over. Mosaic recruitment of new white fibers began as soon as 60 dph. The genes mlc2a and mlc2b were expressed at various levels during the main phases of hyperplasia and hypertrophy. The genes myog and mlc2a were significantly up-regulated during the intensive stratified formation of new fibers and their expression was significantly correlated. Expression of mstn1 and igf1 increased at 35 dph, appeared to regulate the hyperplasia-to-hypertrophy transition, and may have stimulated the expression of mlc2a, mlc2b and col1a1 at the onset of mosaic hyperplasia. The up-regulation of mstn1 at transitional phases in muscle development indicates a dual regulatory role of myostatin in fish larval muscle growth.

A recent analysis of the newly sequenced rainbow trout (Oncorhynchus mykiss) genome suggested that duplicated gluconeogenic g6pc paralogues, fixed in this genome after the salmonid-specific 4th whole genome duplication, may have a role in the setting up of the glucose-intolerant phenotype in this carnivorous species. This should be due to the sub- or neo-functionalization of their regulation. In the present short communication we thus addressed the question of the regulation of these genes by insulin, hormone involved in the glucose homeostasis, and its interaction with glucose and amino acids in vitro. The stimulation of trout hepatocytes with insulin revealed an atypical up-regulation of g6pcb2 ohnologues and confirmed the sub- or neo-functionalization of the five g6pc genes at least at the regulatory level. Intriguingly, when hepatocytes were cultured with high levels of glucose and/or AAs in presence of insulin, most of the g6pc paralogues were up-regulated. It strongly suggested a cross-talk between insulin and nutrients for the regulation of these genes. Moreover these results strengthened the idea that g6pc duplicated genes may significantly contribute to the setting up of the glucose-intolerant phenotype in trout via their atypical regulation by insulin alone or in interaction with nutrients. These findings open new perspectives to better understand in vivo glucose-intolerant phenotype in trout fed a high carbohydrate diet.

A digestibility trial was performed with gilthead sea bream juveniles (IBW = 72 g) fed four diets differing in lipid source (fish oil, FO; or a blend of vegetable oil, VO) and starch content (0 %, CH−; or 20 %, CH+) to evaluate the potential interactive effects between carbohydrates and VO on the processes involved in digestion, absorption and transport of lipids and glucose. In fish fed VO diets a decrease in lipid digestibility and in cholesterol (C), High Density Lipoprotein(HDL)-C and Low Density Lipoprotein (LDL)-C (only in CH+ group) were recorded. Contrarily, dietary starch induced postprandial hyperglycemia and time related alterations on serum triacylglycerol (TAG), phospholipid (PL) and C concentrations. Fish fed a CH+ diet presented lower serum TAG than CH− group at 6 h post-feeding, and the reverse was observed at 12 h post-feeding for TAG and PL. Lower serum C and PL at 6 h post-feeding were recorded only in VOCH+ group. No differences between groups were observed in hepatic and intestinal transcript levels of proteins involved in lipid transport and hydrolysis (FABP, DGAT, GPAT, MTP, LPL, LCAT). Lower transcript levels of proteins related to lipid transport (ApoB, ApoA1, FABP2) were observed in the intestine of fish fed the CH+ diet, but remained unchanged in the liver. Overall, transcriptional mechanisms involved in lipid transport and absorption were not linked to changes in lipid serum and digestibility. Dietary starch affected lipid absorption and transport, probably due to a delay in lipid absorption. This study suggests that a combination of dietary VO and starch may negatively affect cholesterol absorption and transport.

Background The achievement of sustainable feeding practices in aquaculture by reducing the reliance on wild-captured fish, via replacement of fish-based feed with plant-based feed, is impeded by the poor growth response seen in fish fed high levels of plant ingredients. Our recent strategy to nutritionally program rainbow trout by early short-term exposure to a plant-based (V) diet versus a control fish-based (M) diet at the first-feeding fry stage when the trout fry start to consume exogenous feed, resulted in remarkable improvements in feed intake, growth and feed utilization when the same fish were challenged with the diet V (V-challenge) at the juvenile stage, several months following initial exposure. We employed microarray expression analysis at the first-feeding and juvenile stages to deduce the mechanisms associated with the nutritional programming of plant-based feed acceptance in trout. Results Transcriptomic analysis was performed on rainbow trout whole fry after 3 weeks exposure to either diet V or diet M at the first feeding stage (3-week), and in the whole brain and liver of juvenile trout after a 25 day V-challenge, using a rainbow trout custom oligonucleotide microarray. Overall, 1787 (3-week + Brain) and 924 (3-week + Liver) mRNA probes were affected by the early-feeding exposure. Gene ontology and pathway analysis of the corresponding genes revealed that nutritional programming affects pathways of sensory perception, synaptic transmission, cognitive processes and neuroendocrine peptides in the brain; whereas in the liver, pathways mediating intermediary metabolism, xenobiotic metabolism, proteolysis, and cytoskeletal regulation of cell cycle are affected. These results suggest that the nutritionally programmed enhanced acceptance of a plant-based feed in rainbow trout is driven by probable acquisition of flavour and feed preferences, and reduced sensitivity to changes in hepatic metabolic and stress pathways. Conclusions This study outlines the molecular mechanisms in trout brain and liver that accompany the nutritional programming of plant-based diet acceptance in trout, reinforces the notion of the first-feeding stage in oviparous fish as a critical window for nutritional programming, and provides support for utilizing this strategy to achieve improvements in sustainability of feeding practices in aquaculture. Electronic supplementary material The online version of this article (doi:10.1186/s12864-016-2804-1) contains supplementary material, which is available to authorized users.

International audience; Meta-analysis of literature data on mineral and trace element requirements of fish was performed with the major objectives of identifying appropriate response criteria and the factors affecting the minimal dietary inclusion levels. The primary data set included 25 studies on available P, 20 on Ca, 24 on Mg, 5 on K, 37 for Zn, 23 for Se, 19 for Mn, 16 for Fe and 13 for Cu. Broken line regression analysis with linear plateau model (P, Ca, Mg and K) or two-linear line model (Zn, Cu, Fe, Mn and Se) was used for determining the minimal dietary inclusion levels. Vertebral mineral concentration (P, Ca, Zn and Mn), whole-body mineral levels (Mg, K and Fe) and hepatic enzyme activity (Se) were found to be the most appropriate criteria for the respective minerals analysed. In general, weight gain as the criterion resulted in a lower estimate (by 18–42%) than those obtained using whole-body or vertebral mineral concentrations as response criteria. The analysis also showed that different fish species do not show large variations in the mineral and trace element concentrations in the whole body and tissues. Factors such as species group and digestive physiology, type of experimental diet used and dietary interactions, type of mineral source and mineral concentration of water were found to affect the minimal dietary inclusion levels of certain minerals. Besides the meta-analysis, research needs in mineral nutrition of fish with reference to growing changes in dietary strategies and rearing systems are discussed

International audience; Flesh lipid content is a determinant of fillet quality that could be controlled by selective breeding. Two lines of rainbow trouts divergently selected for lipid content, a lean muscle line (L) and a fat muscle line (F), were assessed for raw, cooked, and smoked fillet quality parameters. Fish from the L line gave consistently lower values than those from the F line for all adiposity parameters (fat-meter value, muscle lipid and dry matter content). Raw fillet from L fish gave lower values of lightness, redness and yellowness. However, cooked fillets differed only for yellowness whereas smoked fillets differed for both redness and yellowness but not for lightness. Mechanical resistance of fillets was also affected by selection. Fillets from L fish were firmer at slaughter time and two days post-mortem, as were the smoked fillets. However, no difference in textural parameters was measured between cooked fillets from the two lines. Histological measurement of white muscle fiber size revealed that M fish had much smaller fiber than G fish.